Every paper, by date: page 181

44,644 papers with a page: 24,189 with their authors' code, 4,955 with code on request, 15,495 with data only. The most recent first, 224 a page. Page 181 of 200: 23 November 2022 to 11 November 2022.

Wednesday, 23 November 2022 (33 papers, 8 on this page)

[40321] doi:10.3389/fnins.2022.1038514 [paper, repository]

Mapping white matter structural covariance connectivity for single subject using wavelet transform with T1-weighted anatomical brain MRI.

Journal: Frontiers in neuroscience

Authors' code: xunhengwang/MCWT (no license)

Status: code verified, 6 files readable

[40322] doi:10.3389/fnins.2022.1044631 [paper, data]

Dual attentive fusion for EEG-based brain-computer interfaces.

Journal: Frontiers in neuroscience

Status: data only, 1 dataset cited

[40323] doi:10.3389/fnrgo.2022.1007673 [paper, repository]

Predictions of task using neural modeling.

Journal: Frontiers in neuroergonomics

Authors' code: OSF 8kc7w (no license)

Status: code verified, 3 files readable, 1 match

[40324] doi:10.3389/fphar.2022.1028002 [paper, data]

AA147 ameliorates post-cardiac arrest cerebral ischemia/reperfusion injury through the co-regulation of the ATF6 and Nrf2 signaling pathways.

Journal: Frontiers in pharmacology

Status: data only, 2 datasets cited

[40325] doi:10.3389/fpubh.2022.1038742 [paper, data]

Staging study of single-channel sleep EEG signals based on data augmentation.

Journal: Frontiers in public health

Status: data only, 1 dataset cited

[40326] doi:10.3390/biom12121740 [paper, repository]

Entropy and Variability: A Second Opinion by Deep Learning.

Journal: Biomolecules

Authors' code: cmbi/EntVar (no license)

Status: code verified, 3 files readable, 1 match

[40327] doi:10.3390/e24121708 [paper, repository]

Effective Approaches to Fetal Brain Segmentation in MRI and Gestational Age Estimation by Utilizing a Multiview Deep Inception Residual Network and Radiomics.

Journal: Entropy (Basel, Switzerland)

Authors' code: Moona-Mazher/Fetal-Segmentation-Gestational-Age-Prediction-Deep-Learning (no license)

Status: empty repository, 1 file readable

[40328] doi:10.7554/elife.78815 [paper, repository]

Cortex-wide response mode of VIP-expressing inhibitory neurons by reward and punishment.

Journal: eLife

Authors' code: quentinneuro/bpod-functionqc (no license), QuentinNeuro (no license), OSF 9fbg7 (no license)

Status: code verified, 46 files readable, 1 match

Tuesday, 22 November 2022 (24 papers)

[40329] doi:10.1002/adhm.202201138 [paper, repository]

Large-Scale Production of Wholly Cellular Bioinks via the Optimization of Human Induced Pluripotent Stem Cell Aggregate Culture in Automated Bioreactors.

Journal: Advanced healthcare materials

Authors' code: Zenodo 7150718 (other-open), sohams-MASS/EBAnalysisSky-Scott-2022 (no license)

Status: code verified, 24 files readable, 1 match

[40330] doi:10.1002/hbm.26158 [paper, repository]

Changes in global functional network properties predict individual differences in habit formation.

Journal: Human brain mapping

Authors' code: xiaoyu-TUD/Elastic-Net (no license)

Status: code verified, 33 files readable, 4 matches

[40331] doi:10.1016/j.crmeth.2022.100351 [paper]

Head-mounted optical imaging and optogenetic stimulation system for use in behaving primates.

Journal: Cell reports methods

Status: code on request

[40332] doi:10.1016/j.mcpro.2022.100452 [paper, data]

Mass Spectrometry-Based Proteomics Analysis of Human Substantia Nigra From Parkinson's Disease Patients Identifies Multiple Pathways Potentially Involved in the Disease.

Journal: Molecular & cellular proteomics : MCP

Status: data only, 4 datasets cited

[40333] doi:10.1016/j.medj.2022.11.002 [paper, repository]

Systemic administration of novel engineered AAV capsids facilitates enhanced transgene expression in the macaque CNS.

Journal: Med (New York, N.Y.)

Authors' code: Zenodo 7262232 (other-open)

Status: code verified

[40334] doi:10.1016/j.xops.2022.100258 [paper, repository]

SynthEye: Investigating the Impact of Synthetic Data on Artificial Intelligence-assisted Gene Diagnosis of Inherited Retinal Disease.

Journal: Ophthalmology science

Authors' code: pontikos-lab/syntheye (MIT)

Status: code verified, 32 files readable, 5 matches

[40335] doi:10.1038/s41421-022-00469-0 [paper, data]

Human SERPINA3 induces neocortical folding and improves cognitive ability in mice.

Journal: Cell discovery

Status: data only, 1 dataset cited

[40336] doi:10.1038/s41467-022-33884-8 [paper, data]

Mapping the effects of pregnancy on resting state brain activity, white matter microstructure, neural metabolite concentrations and grey matter architecture.

Journal: Nature communications

Status: data only, 1 dataset cited

[40337] doi:10.1038/s41467-022-34331-4 [paper, data]

Prematurely terminated intron-retaining mRNAs invade axons in SFPQ null-driven neurodegeneration and are a hallmark of ALS.

Journal: Nature communications

Status: data only, 3 datasets cited

[40338] doi:10.1038/s41598-022-24306-2 [paper]

Identification of potentially functional modules and diagnostic genes related to amyotrophic lateral sclerosis based on the WGCNA and LASSO algorithms.

Journal: Scientific reports

Status: data only

[40339] doi:10.1038/s42003-022-03965-x [paper, repository]

Dementia with Lewy bodies post-mortem brains reveal differentially methylated CpG sites with biomarker potential.

Journal: Communications biology

Authors' code: xshaonrc/DLBepigenetics (MIT)

Status: code verified, 6 files readable, 9 matches

[40340] doi:10.1111/gbb.12830 [paper]

Neuropathic pain as a trigger for histone modifications in limbic circuitry.

Journal: Genes, brain, and behavior

Status: code on request

[40341] doi:10.1172/jci.insight.159247 [paper, data]

mTOR-neuropeptide Y signaling sensitizes nociceptors to drive neuropathic pain.

Journal: JCI insight

Status: data only, 2 datasets cited

[40342] doi:10.1177/0271678x221141139 [paper, repository]

Gray matter hypoperfusion is a late pathological event in the course of Alzheimer's disease.

Journal: Journal of cerebral blood flow and metabolism : official journal of the International Society of Cerebral Blood Flow and Metabolism

Authors' code: ExploreASL/ExploreASL (no license)

Status: code verified, 2,000 files readable, 5 matches

[40343] doi:10.1186/s13041-022-00981-0 [paper, data]

Forebrain-specific conditional calcineurin deficiency induces dentate gyrus immaturity and hyper-dopaminergic signaling in mice.

Journal: Molecular brain

Status: data only, 2 datasets cited

[40344] doi:10.1186/s13293-022-00477-5 [paper, repository]

Unveiling sex-based differences in Parkinson's disease: a comprehensive meta-analysis of transcriptomic studies.

Journal: Biology of sex differences

Authors' code: adlpecer/PD_GeneMetaanalysis (no license)

Status: code verified, 7 files readable, 2 matches

[40345] doi:10.1371/journal.pcbi.1010654 [paper, repository]

Look twice: A generalist computational model predicts return fixations across tasks and species.

Journal: PLoS computational biology

Authors' code: kreimanlab/RefixationModel (MIT)

Status: code verified, 167 files readable, 2 matches

[40346] doi:10.1371/journal.pone.0277644 [paper, data]

Study on the central neural pathway and the relationship between the heart and small intestine via a dual neural tracer.

Journal: PloS one

Status: data only, 1 dataset cited

[40347] doi:10.3389/fncom.2022.900571 [paper, repository]

Biases in BCI experiments: Do we really need to balance stimulus properties across categories?

Journal: Frontiers in computational neuroscience

Authors' code: numediart/Covariates_Analysis (MIT), numediart/PreprocEEG (MIT)

Status: code verified, 338 files readable, 14 matches

[40348] doi:10.3389/fpsyg.2022.963666 [paper, repository]

A novel task to evaluate irony comprehension and its essential elements in Spanish speakers.

Journal: Frontiers in psychology

Authors' code: Eli1404/verbal.irony.behavioral (CC0-1.0)

Status: code verified, 11 files readable, 2 matches

[40349] doi:10.3389/fpsyt.2022.1050403 [paper, data]

Altered functional connectivity strength in chronic insomnia associated with gut microbiota composition and sleep efficiency.

Journal: Frontiers in psychiatry

Status: data only, 1 dataset cited

[40350] doi:10.3390/biomedicines10123006 [paper, data]

A Few-Shot Learning-Based EEG and Stage Transition Sequence Generator for Improving Sleep Staging Performance.

Journal: Biomedicines

Status: data only, 1 dataset cited

[40351] doi:10.3390/cells11233726 [paper]

Hydroxysafflor Yellow A Exerts Neuroprotective Effects via HIF-1α/BNIP3 Pathway to Activate Neuronal Autophagy after OGD/R.

Journal: Cells

Status: data only

[40352] doi:10.7554/elife.69686 [paper, data]

Whole brain correlates of individual differences in skin conductance responses during discriminative fear conditioning to social cues.

Journal: eLife

Status: data only, 1 dataset cited

Monday, 21 November 2022 (27 papers)

[40353] doi:10.1002/acm2.13853 [paper, repository]

Optimization of isocenter position for multiple targets with nonuniform-margin expansion.

Journal: Journal of applied clinical medical physics

Authors' code: ingber.com (no license)

Status: code found, still to be checked

[40354] doi:10.1002/hbm.26125 [paper, repository]

Comprehensive shape analysis of the cortex in Huntington's disease.

Journal: Human brain mapping

Authors' code: MedICL-VU/Cortical-Shape-Analysis-in-HD (no license)

Status: code verified, 16 files readable, 1 match

[40355] doi:10.1016/j.crmeth.2022.100338 [paper]

Grabody B, an IGF1 receptor-based shuttle, mediates efficient delivery of biologics across the blood-brain barrier.

Journal: Cell reports methods

Status: code on request

[40356] doi:10.1016/j.nicl.2022.103273 [paper, repository]

Adapting UK Biobank imaging for use in a routine memory clinic setting: The Oxford Brain Health Clinic.

Journal: NeuroImage. Clinical

Authors' code: git.fmrib.ox.ac.uk/falmagro/uk_biobank_pipeline_v_1.5 (no license), git.fmrib.ox.ac.uk/open-science/analysis (no license), Zenodo 11389726 (Apache-2.0), Zenodo 11389725 (Apache-2.0)

Status: code verified, 4 files readable

[40357] doi:10.1038/s41398-022-02246-9 [paper, repository]

Connectomic neuromodulation for Alzheimer's disease: A systematic review and meta-analysis of invasive and non-invasive techniques.

Journal: Translational psychiatry

Authors' code: lead-dbs.org (no license)

Status: code verified

[40358] doi:10.1038/s41597-022-01820-6 [paper, data]

Neuromodulatory effects of theta burst stimulation to the prefrontal cortex.

Journal: Scientific data

Status: data only, 1 dataset cited

[40359] doi:10.1038/s41598-022-23306-6 [paper, data]

Prediction of severe thunderstorm events with ensemble deep learning and radar data.

Journal: Scientific reports

Status: data only, 1 dataset cited

[40360] doi:10.1038/s41598-022-24010-1 [paper, repository]

EEG-based grading of immune effector cell-associated neurotoxicity syndrome.

Journal: Scientific reports

Authors' code: mghcdac/VE-ICANS (CC-BY-NC-4.0)

Status: code verified, 7 files readable, 3 matches

[40361] doi:10.1038/s41598-022-24674-9 [paper, repository]

SNAL: sensitive non-associative learning network configuration for the automatic driving strategy.

Journal: Scientific reports

Authors' code: TimeToLive404/SNAL-and-datasets (no license)

Status: code verified, 51 files readable, 6 matches

[40362] doi:10.1038/s42003-022-04214-x [paper, data]

Brain sex-dependent alterations after prolonged high fat diet exposure in mice.

Journal: Communications biology

Status: data only, 1 dataset cited

[40363] doi:10.1038/s42003-022-04228-5 [paper]

Sequential fear generalization and network connectivity in trauma exposed humans with and without psychopathology.

Journal: Communications biology

Status: code on request

[40364] doi:10.1038/s42255-022-00677-8 [paper, repository]

Pharmacological targeting of glutamatergic neurons within the brainstem for weight reduction.

Journal: Nature metabolism

Authors' code: ChristophKirst/ClearMap2 (GPL-3.0), AlbertPun/TRAILMAP (MIT), RockefellerUniversity/SchneebergerPane_NatureMetabolism2022 (no license), supp:PMC9684079/42255_2022_677_MOESM4_ESM.py (no license)

Status: code verified, 971 files readable, 8 matches

[40365] doi:10.1073/pnas.2201783119 [paper, repository]

Neuronally produced betaine acts via a ligand-gated ion channel to control behavioral states.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: hiris25/TEVC-analysis-scripts (no license), hiris25/Tierpsy-Tracking-Analysis (no license)

Status: code verified, 17 files readable, 2 matches

[40366] doi:10.1073/pnas.2203935119 [paper, data]

Specification of neuronal subtypes in the spiral ganglion begins prior to birth in the mouse.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 1 dataset cited

[40367] doi:10.1073/pnas.2206829119 [paper, repository]

Longitudinal in vivo Ca<sup>2+</sup> imaging reveals dynamic activity changes of diseased retinal ganglion cells at the single-cell level.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: Zenodo 6842355 (other-open), Zenodo 6842364 (other-open), Zenodo 6842368 (other-open), hulab-code/rcc (no license), hulab-code/rrc (no license)

Status: code verified, 45 files readable, 1 match

[40368] doi:10.1073/pnas.2208353119 [paper, repository]

Temporal dynamics of the sensorimotor convergence underlying voluntary limb movement.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: Zenodo 7100949 (CC-BY-4.0)

Status: code verified

[40369] doi:10.1073/pnas.2210532119 [paper, data]

A blood-brain penetrant RNA-targeted small molecule triggers elimination of r(G<sub>4</sub>C<sub>2</sub>)<sup>exp</sup> in c9ALS/FTD via the nuclear RNA exosome.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 1 dataset cited

[40370] doi:10.1093/braincomms/fcac302 [paper, repository]

The spatial relationship between the MRI lesion and intraoperative electrocorticography in focal epilepsy surgery.

Journal: Brain communications

Authors' code: UMCU-EpiLAB/umcuEpi_MRI_and_ioECoG (GPL-3.0)

Status: code verified, 8 files readable

[40371] doi:10.1186/s13041-022-00980-1 [paper, repository]

Moderate effect of early-life experience on dentate gyrus function.

Journal: Molecular brain

Authors' code: antoinemadar/PatSepSpikeTrains (MIT)

Status: code verified, 50 files readable, 3 matches

[40372] doi:10.1186/s40478-022-01472-y [paper, data]

Molecular and spatial heterogeneity of microglia in Rasmussen encephalitis.

Journal: Acta neuropathologica communications

Status: data only, 1 dataset cited

[40373] doi:10.1371/journal.pone.0277974 [paper, repository]

Real-time noise cancellation with deep learning.

Journal: PloS one

Authors' code: researchdata.gla.ac.uk/1258/code (no license), Zenodo 6360675 (GPL-2.0), Zenodo 7100537 (GPL-2.0), Zenodo 17827627 (GPL-3.0), berndporr/dnf_torch (BSD-3-Clause), Zenodo 17827628 (GPL-3.0), berndporr/deepneuronalfilter (GPL-3.0)

Status: code verified, 267 files readable, 5 matches

[40374] doi:10.3389/fcell.2022.1034679 [paper, data]

Reduced <i>LYNX1</i> expression in transcriptome of human iPSC-derived neural progenitors modeling fragile X syndrome.

Journal: Frontiers in cell and developmental biology

Status: data only, 1 dataset cited

[40375] doi:10.3389/fcell.2022.994588 [paper, data]

Tsukushi proteoglycan maintains RNA splicing and developmental signaling network in GFAP-expressing subventricular zone neural stem/progenitor cells.

Journal: Frontiers in cell and developmental biology

Status: data only, 1 dataset cited

[40376] doi:10.3389/fgene.2022.973979 [paper, data]

N⁶-methyladenosine-modified lncRNA and mRNA modification profiles in cerebral ischemia-reperfusion injury.

Journal: Frontiers in genetics

Status: data only, 1 dataset cited

[40377] doi:10.3389/fnimg.2022.1023481 [paper, repository]

Improving across-dataset brain tissue segmentation for MRI imaging using transformer.

Journal: Frontiers in neuroimaging

Authors' code: raovish6/TABS (no license)

Status: code verified, 8 files readable, 4 matches

[40378] doi:10.3389/fnins.2022.1046752 [paper, repository]

SF-MVPA: A from raw data to statistical results and surface space-based MVPA toolbox.

Journal: Frontiers in neuroscience

Authors' code: pan.baidu.com/s/1kamjmucupgpd1ubhygvs5a (no license)

Status: code verified

[40379] doi:10.3389/fphar.2022.1076958 [paper, data]

Mechanism of action of paclitaxel for treating glioblastoma based on single-cell RNA sequencing data and network pharmacology.

Journal: Frontiers in pharmacology

Status: data only, 1 dataset cited

Sunday, 20 November 2022 (1 paper)

[40380] doi:10.3390/diagnostics12112875 [paper, data]

Detection and Morphological Analysis of Micro-Ruptured Cortical Arteries in Subdural Hematoma: Three-Dimensional Visualization Using the Tissue-Clearing Clear, Unobstructed, Brain/Body Imaging Cocktails and Computational Analysis Method.

Journal: Diagnostics (Basel, Switzerland)

Status: data only, 1 dataset cited

Saturday, 19 November 2022 (9 papers)

[40381] doi:10.1002/hbm.26152 [paper, repository]

Unsupervised physiological noise correction of functional magnetic resonance imaging data using phase and magnitude information (PREPAIR).

Journal: Human brain mapping

Authors' code: daveB1978/PREPAIR (MIT)

Status: code verified, 28 files readable

[40382] doi:10.1007/s00441-022-03707-9 [paper, data]

Sex steroid hormone synthesis, metabolism, and the effects on the mammalian olfactory system.

Journal: Cell and tissue research

Status: data only, 1 dataset cited

[40383] doi:10.1016/j.ebiom.2022.104356 [paper, repository]

Mapping brain endophenotypes associated with idiopathic pulmonary fibrosis genetic risk.

Journal: EBioMedicine

Authors' code: Alirezamnk/BWAS_IPF (MIT)

Status: code verified, 8 files readable, 2 matches

[40384] doi:10.1016/j.isci.2022.105625 [paper, data]

Machine learning-based clustering and classification of mouse behaviors via respiratory patterns.

Journal: iScience

Status: data only, 2 datasets cited

[40385] doi:10.1016/j.neuroimage.2022.119757 [paper, repository]

Human visual processing during walking: Dissociable pre- and post-stimulus influences.

Journal: NeuroImage

Authors' code: figshare 19403390 (CC0-1.0)

Status: code verified, 1 file readable

[40386] doi:10.1038/s41598-022-23720-w [paper, data]

Investigating the role of the foveal cortex in peripheral object discrimination.

Journal: Scientific reports

Status: data only, 1 dataset cited

[40387] doi:10.1038/s42003-022-04217-8 [paper, data]

Magnetoencephalography recordings reveal the spatiotemporal dynamics of recognition memory for complex versus simple auditory sequences.

Journal: Communications biology

Status: data only, 1 dataset cited

[40388] doi:10.1111/jcmm.17593 [paper]

Identification of core genes in prefrontal cortex and hippocampus of Alzheimer's disease based on mRNA-miRNA network.

Journal: Journal of cellular and molecular medicine

Status: data only

[40389] doi:10.1186/s12974-022-02634-4 [paper, data]

Neuronal nuclear calcium signaling suppression of microglial reactivity is mediated by osteoprotegerin after traumatic brain injury.

Journal: Journal of neuroinflammation

Status: data only, 3 datasets cited

Friday, 18 November 2022 (22 papers)

[40390] doi:10.1002/hbm.26132 [paper, repository]

White matter brain structure predicts language performance and learning success.

Journal: Human brain mapping

Authors' code: hschmidt82/Yerevan_public (no license)

Status: code verified, 1 file readable

[40391] doi:10.1007/s00422-022-00951-8 [paper, repository]

Variational and phase response analysis for limit cycles with hard boundaries, with applications to neuromechanical control problems.

Journal: Biological cybernetics

Authors' code: yangyang-wang/AplysiaModel (no license)

Status: code verified, 16 files readable, 2 matches

[40392] doi:10.1007/s10548-022-00929-6 [paper, repository]

Trait Aggression is Reflected by a Lower Temporal Stability of EEG Resting Networks.

Journal: Brain topography

Authors' code: OSF cen3s (no license)

Status: code verified, 1 file readable, 2 matches

[40393] doi:10.1016/j.clinph.2022.11.007 [paper, repository]

Quantitative artifact reduction and pharmacologic paralysis improve detection of EEG epileptiform activity in critically ill patients.

Journal: Clinical neurophysiology : official journal of the International Federation of Clinical Neurophysiology

Authors' code: erinconrad/paralysis (no license)

Status: code verified, 29 files readable, 2 matches

[40394] doi:10.1016/j.isci.2022.105418 [paper]

Learning to control a BMI-driven wheelchair for people with severe tetraplegia.

Journal: iScience

Status: code on request

[40395] doi:10.1016/j.nicl.2022.103271 [paper, repository]

Early white matter connectivity and plasticity in post stroke aphasia recovery.

Journal: NeuroImage. Clinical

Authors' code: kschevenels/pwawm (CC-BY-4.0)

Status: code verified, 13 files readable, 4 matches

[40396] doi:10.1016/j.ynirp.2022.100146 [paper, repository]

Fatness, fitness and the aging brain: A cross sectional study of the associations between a physiological estimate of brain age and physical fitness, activity, sleep, and body composition.

Journal: Neuroimage. Reports

Authors' code: james-cole/brainager (LGPL-3.0)

Status: code verified, 9 files readable, 1 match

[40397] doi:10.1038/s41522-022-00355-3 [paper, repository]

Implications of oral streptococcal bacteriophages in autism spectrum disorder.

Journal: NPJ biofilms and microbiomes

Authors' code: drive5.com/pilercr (no license)

Status: code verified

[40398] doi:10.1093/texcom/tgac041 [paper, repository]

Fetal blockade of nicotinic acetylcholine transmission causes autism-like impairment of biological motion preference in the neonatal chick.

Journal: Cerebral cortex communications

Authors' code: eprints.lib.hokudai.ac.jp/dspace/handle (no license)

Status: code verified

[40399] doi:10.1126/sciadv.abo6764 [paper, data]

Unified epigenomic, transcriptomic, proteomic, and metabolomic taxonomy of Alzheimer's disease progression and heterogeneity.

Journal: Science advances

Status: data only, 1 dataset cited

[40400] doi:10.1186/s12880-022-00931-1 [paper, data]

Brain tumour segmentation based on an improved U-Net.

Journal: BMC medical imaging

Status: data only, 1 dataset cited

[40401] doi:10.1186/s13073-022-01134-7 [paper, data]

Towards elucidating disease-relevant states of neurons and glia by CRISPR-based functional genomics.

Journal: Genome medicine

Status: data only, 5 datasets cited

[40402] doi:10.3389/fncom.2022.1012559 [paper, data]

BIAS-3D: Brain inspired attentional search model fashioned after what and where/how pathways for target search in 3D environment.

Journal: Frontiers in computational neuroscience

Status: data only, 1 dataset cited

[40403] doi:10.3389/fncom.2022.1022787 [paper, data]

Neuronal and behavioral affective perceptions of human and naturalness-reduced emotional prosodies.

Journal: Frontiers in computational neuroscience

Status: data only, 1 dataset cited

[40404] doi:10.3389/fncom.2022.948973 [paper, repository]

Production of adaptive movement patterns <i>via</i> an insect inspired spiking neural network central pattern generator.

Journal: Frontiers in computational neuroscience

Authors' code: FabianSteinbeck/SNN-LAL-CPG (no license)

Status: code verified, 19 files readable, 3 matches

[40405] doi:10.3389/fnhum.2022.1021857 [paper, repository]

White matter integrity as a mediator between socioeconomic status and executive function.

Journal: Frontiers in human neuroscience

Authors' code: DiCIPHR-Lab/Fernet (other)

Status: code verified, 10 files readable, 1 match

[40406] doi:10.3389/fninf.2022.1032636 [paper, repository]

Alteration of brain nuclei in obese children with and without Prader-Willi syndrome.

Journal: Frontiers in neuroinformatics

Authors' code: jdiedrichsen/suit (no license)

Status: code verified, 43 files readable, 1 match

[40407] doi:10.3389/fphar.2022.1052110 [paper]

Zhilong Huoxue Tongyu Capsules' Effects on ischemic stroke: An assessment using fecal 16S rRNA gene sequencing and untargeted serum metabolomics.

Journal: Frontiers in pharmacology

Status: data only

[40408] doi:10.3390/ijms232214309 [paper, data]

Molecular Characterization of the Dual Effect of the GPER Agonist G-1 in Glioblastoma.

Journal: International journal of molecular sciences

Status: data only, 1 dataset cited

[40409] doi:10.7554/elife.78733 [paper, repository]

Development of visual cortex in human neonates is selectively modified by postnatal experience.

Journal: eLife

Authors' code: MingyangLeee/Neonatal-Visual-Cortex (no license)

Status: code verified, 68 files readable, 2 matches

[40410] doi:10.7554/elife.79077 [paper, repository]

Munc13 supports fusogenicity of non-docked vesicles at synapses with disrupted active zones.

Journal: eLife

Authors' code: Zenodo 6388196 (CC-BY-4.0), kaeserlab/Hierarchical_Bootstrap_Analysis_RB (CC-BY-4.0)

Status: code verified, 34 files readable, 3 matches

[40411] doi:10.7554/elife.82094 [paper, repository]

A role for the centrosome in regulating the rate of neuronal efferocytosis by microglia in vivo.

Journal: eLife

Authors' code: max-brambach/microglia_centrosome (MIT)

Status: code verified, 7 files readable, 5 matches

Thursday, 17 November 2022 (25 papers)

[40412] doi:10.1016/j.dcn.2022.101178 [paper, repository]

Can this data be saved? Techniques for high motion in resting state scans of first grade children.

Journal: Developmental cognitive neuroscience

Authors' code: Jolinda/lcni_motion_scripts (MIT)

Status: code verified, 5 files readable

[40413] doi:10.1016/j.isci.2022.105623 [paper]

KIBRA regulates activity-induced AMPA receptor expression and synaptic plasticity in an age-dependent manner.

Journal: iScience

Status: code on request

[40414] doi:10.1038/s41467-022-34774-9 [paper]

Compact artificial neuron based on anti-ferroelectric transistor.

Journal: Nature communications

Status: code on request

[40415] doi:10.1038/s41467-022-34811-7 [paper, data]

Norepinephrine transporter defects lead to sympathetic hyperactivity in Familial Dysautonomia models.

Journal: Nature communications

Status: data only, 3 datasets cited

[40416] doi:10.1038/s41598-022-23652-5 [paper, data]

Sirt3 deficiency induced down regulation of insulin degrading enzyme in comorbid Alzheimer's disease with metabolic syndrome.

Journal: Scientific reports

Status: data only, 1 dataset cited

[40417] doi:10.1093/texcom/tgac049 [paper]

A comparison of multisensory features of two auditory cortical areas: primary (A1) and higher-order dorsal zone (DZ).

Journal: Cerebral cortex communications

Status: code on request

[40418] doi:10.1155/2022/4661519 [paper, data]

BHF177 Suppresses Diabetic Neuropathic Pain by Blocking PKC/CaMKII/ERK1/2/CREB Signaling Pathway through Activating GABA_B Receptor.

Journal: Oxidative medicine and cellular longevity

Status: data only, 1 dataset cited

[40419] doi:10.1186/s12864-022-08986-8 [paper, repository]

Systematic investigation of imprinted gene expression and enrichment in the mouse brain explored at single-cell resolution.

Journal: BMC genomics

Authors' code: JEFworks/liger (GPL-3.0), MJHiggs/IG-Single-Cell-Enrichment (no license)

Status: code verified, 37 files readable, 7 matches

[40420] doi:10.1186/s12911-022-02042-x [paper, data]

Detection of K-complexes in EEG waveform images using faster R-CNN and deep transfer learning.

Journal: BMC medical informatics and decision making

Status: data only, 1 dataset cited

[40421] doi:10.1186/s12935-022-02753-1 [paper, data]

Circular RNA circPTPRF promotes the progression of GBM via sponging miR-1208 to up-regulate YY1.

Journal: Cancer cell international

Status: data only, 1 dataset cited

[40422] doi:10.1186/s13063-022-06863-z [paper, data]

Infraslow closed-loop brain training for anxiety and depression (ISAD): a protocol for a randomized, double-blind, sham-controlled pilot trial in adult females with internalizing disorders.

Journal: Trials

Status: data only, 2 datasets cited

[40423] doi:10.1186/s13195-022-01113-5 [paper, data]

Multi-platform proteomic analysis of Alzheimer's disease cerebrospinal fluid and plasma reveals network biomarkers associated with proteostasis and the matrisome.

Journal: Alzheimer's research & therapy

Status: data only, 2 datasets cited

[40424] doi:10.1186/s13550-022-00941-8 [paper, data]

Validation of dynamic [¹⁸F]FE-PE2I PET for estimation of relative regional cerebral blood flow: a comparison with [¹⁵O]H₂O PET.

Journal: EJNMMI research

Status: data only, 1 dataset cited

[40425] doi:10.1371/journal.pone.0276200 [paper, data]

Dissociable effects of emotional stimuli on electrophysiological indices of time and decision-making.

Journal: PloS one

Status: data only, 1 dataset cited

[40426] doi:10.1371/journal.pone.0277220 [paper, repository]

The hidden cost of a smartphone: The effects of smartphone notifications on cognitive control from a behavioral and electrophysiological perspective.

Journal: PloS one

Authors' code: jupshaw/SMARTPHONES-AND-COGNITIVE-CONTROL (CC0-1.0)

Status: code verified, 4 files readable, 2 matches

[40427] doi:10.15252/emmm.202215795 [paper, repository]

Acetate supplementation restores cognitive deficits caused by ARID1A haploinsufficiency in excitatory neurons.

Journal: EMBO molecular medicine

Authors' code: encode-dcc/atac-seq-pipeline (MIT)

Status: code verified, 56 files readable, 2 matches

[40428] doi:10.3389/fgene.2022.1042543 [paper]

Identification of RNA N6-methyladenosine regulation in epilepsy: Significance of the cell death mode, glycometabolism, and drug reactivity.

Journal: Frontiers in genetics

Status: data only

[40429] doi:10.3389/fncom.2022.967735 [paper, repository]

Perineuronal nets restrict transport near the neuron surface: A coarse-grained molecular dynamics study.

Journal: Frontiers in computational neuroscience

Authors' code: Zenodo 7304745 (CC-BY-4.0)

Status: code verified, 72 files readable, 3 matches

[40430] doi:10.3389/fnins.2022.1014539 [paper, repository]

Abnormal resting-state functional connectome in methamphetamine-dependent patients and its application in machine-learning-based classification.

Journal: Frontiers in neuroscience

Authors' code: cwatson/brainGraph (GPL), topepo/caret (no license)

Status: code verified, 530 files readable, 9 matches

[40431] doi:10.3389/fnins.2022.1048565 [paper, data]

Mapping trends and hotspot regarding gastrointestinal microbiome and neuroscience: A bibliometric analysis of global research (2002-2022).

Journal: Frontiers in neuroscience

Status: data only, 1 dataset cited

[40432] doi:10.3389/fonc.2022.1026670 [paper, data]

Schwann cells promote the migration and invasion of colorectal cancer cells <i>via</i> the activated NF-κB/IL-8 axis in the tumor microenvironment.

Journal: Frontiers in oncology

Status: data only, 1 dataset cited

[40433] doi:10.3389/fphar.2022.1072253 [paper, data]

Serine and glycine metabolism-related gene expression signature stratifies immune profiles of brain gliomas, and predicts prognosis and responses to immunotherapy.

Journal: Frontiers in pharmacology

Status: data only, 7 datasets cited

[40434] doi:10.3390/cancers14225642 [paper, data]

SOX4 Mediates ATRA-Induced Differentiation in Neuroblastoma Cells.

Journal: Cancers

Status: data only, 1 dataset cited

[40435] doi:10.3390/e24111678 [paper, repository]

Brain Inspired Cortical Coding Method for Fast Clustering and Codebook Generation.

Journal: Entropy (Basel, Switzerland)

Authors' code: Zenodo 7180368 (other-open), Zenodo 7185297 (CC-BY-4.0), mericy/clusteringcomparison (MIT)

Status: code verified, 35 files readable

[40436] doi:10.7554/elife.80633 [paper, repository]

Phase separation of competing memories along the human hippocampal theta rhythm.

Journal: eLife

Authors' code: OSF evgaw (no license)

Status: empty repository

Wednesday, 16 November 2022 (30 papers)

[40437] doi:10.1016/j.isci.2022.105612 [paper, data]

PDZD8-deficient mice accumulate cholesteryl esters in the brain as a result of impaired lipophagy.

Journal: iScience

Status: code on request, 1 dataset cited

[40438] doi:10.1038/s41380-022-01862-7 [paper, data]

Impact of alcohol exposure on neural development and network formation in human cortical organoids.

Journal: Molecular psychiatry

Status: data only, 1 dataset cited

[40439] doi:10.1038/s41380-022-01866-3 [paper, repository]

Power and optimal study design in iPSC-based brain disease modelling.

Journal: Molecular psychiatry

Authors' code: johanneshjorth.se/files/synd (no license), ftwkoopmans/msdap (GPL-3.0), jessiebrunner.shinyapps.io/app_powercurves (no license)

Status: code verified, 78 files readable, 4 matches

[40440] doi:10.1038/s41398-022-02242-z [paper, data]

Identification of texture MRI brain abnormalities on first-episode psychosis and clinical high-risk subjects using explainable artificial intelligence.

Journal: Translational psychiatry

Status: data only, 1 dataset cited

[40441] doi:10.1038/s41467-022-34334-1 [paper, repository]

Ascertaining cells' synaptic connections and RNA expression simultaneously with barcoded rabies virus libraries.

Journal: Nature communications

Authors' code: broadinstitute/drop-seq (MIT)

Status: code verified, 743 files readable, 6 matches

[40442] doi:10.1038/s41586-022-05440-3 [paper, repository]

Medin co-aggregates with vascular amyloid-β in Alzheimer's disease.

Journal: Nature

Authors' code: Zenodo 14430060 (CC-BY-4.0)

Status: empty repository

[40443] doi:10.1038/s41598-022-21900-2 [paper, data]

Fragment-based virtual screening identifies a first-in-class preclinical drug candidate for Huntington's disease.

Journal: Scientific reports

Status: data only, 5 datasets cited

[40444] doi:10.1038/s42003-022-04225-8 [paper]

Complexity of modular neuromuscular control increases and variability decreases during human locomotor development.

Journal: Communications biology

Status: code on request

[40445] doi:10.1083/jcb.202203019 [paper, data]

Mitochondrial dysfunction compromises ciliary homeostasis in astrocytes.

Journal: The Journal of cell biology

Status: data only, 1 dataset cited

[40446] doi:10.1126/sciadv.abn6530 [paper, repository]

Somatosensory cortical signature of facial nociception and vibrotactile touch-induced analgesia.

Journal: Science advances

Authors' code: JinghaoLu/MIN1PIPE (GPL-3.0)

Status: code verified, 148 files readable, 2 matches

[40447] doi:10.1126/sciadv.abn7450 [paper]

Clustering of vomeronasal receptor genes is required for transcriptional stability but not for choice.

Journal: Science advances

Status: data only

[40448] doi:10.1126/sciadv.abo2098 [paper, data]

Astrocyte dysfunction drives abnormal resting-state functional connectivity in depression.

Journal: Science advances

Status: data only, 1 dataset cited

[40449] doi:10.1126/sciadv.abq2987 [paper, repository]

Hierarchical deployment of Tbx3 dictates the identity of hypothalamic KNDy neurons to control puberty onset.

Journal: Science advances

Authors' code: GradinaruLab/HCRprobe (no license), Oshlack/speckle (GPL-3.0), Zenodo 7131719 (CC-BY-4.0)

Status: code verified, 34 files readable, 7 matches

[40450] doi:10.1155/2022/7945884 [paper, data]

The BRD4 Inhibitor dBET57 Exerts Anticancer Effects by Targeting Superenhancer-Related Genes in Neuroblastoma.

Journal: Journal of immunology research

Status: data only, 1 dataset cited

[40451] doi:10.1158/2767-9764.crc-22-0337 [paper, data]

The RPL/RPS gene signature of melanoma CTCs associates with brain metastasis.

Journal: Cancer research communications

Status: data only, 2 datasets cited

[40452] doi:10.1186/s12984-022-01104-5 [paper]

Gaze-contingent display technology can help to reduce the ipsilesional attention bias in hemispatial neglect following stroke.

Journal: Journal of neuroengineering and rehabilitation

Status: code on request

[40453] doi:10.1371/journal.pone.0277322 [paper, data]

Machine learning based multi-modal prediction of future decline toward Alzheimer's disease: An empirical study.

Journal: PloS one

Status: data only, 1 dataset cited

[40454] doi:10.1523/jneurosci.1053-22.2022 [paper, repository]

Optimal Control Costs of Brain State Transitions in Linear Stochastic Systems.

Journal: The Journal of neuroscience : the official journal of the Society for Neuroscience

Authors' code: oizumi-lab/SB_toolbox (no license)

Status: code verified, 23 files readable, 4 matches

[40455] doi:10.15252/emmm.202216789 [paper, data]

Whole-brain microscopy reveals distinct temporal and spatial efficacy of anti-Aβ therapies.

Journal: EMBO molecular medicine

Status: code on request, 1 dataset cited

[40456] doi:10.3389/fcell.2022.1025332 [paper]

Somatic mosaicism in <i>STAG2</i>-associated cohesinopathies: Expansion of the genotypic and phenotypic spectrum.

Journal: Frontiers in cell and developmental biology

Status: data only

[40457] doi:10.3389/fimmu.2022.1012884 [paper, data]

Morphine suppresses peripheral responses and transforms brain myeloid gene expression to favor neuropathogenesis in SIV infection.

Journal: Frontiers in immunology

Status: data only, 1 dataset cited

[40458] doi:10.3389/fmed.2022.1042706 [paper, repository]

PET image enhancement using artificial intelligence for better characterization of epilepsy lesions.

Journal: Frontiers in medicine

Authors' code: Project-MONAI/MONAI (Apache-2.0)

Status: code verified, 1,398 files readable, 2 matches

[40459] doi:10.3389/fncom.2022.1034446 [paper, repository]

A theoretical model reveals specialized synaptic depressions and temporal frequency tuning in retinal parallel channels.

Journal: Frontiers in computational neuroscience

Authors' code: heliy/Cone-CBC-synapse-parallel-channels (no license)

Status: code verified, 10 files readable, 1 match

[40460] doi:10.3389/fncom.2022.1062678 [paper, repository]

Brain-inspired Predictive Coding Improves the Performance of Machine Challenging Tasks.

Journal: Frontiers in computational neuroscience

Authors' code: jangho2001us/PredictiveCoding_IncrementalLearning (no license), jangho2001us/PredictiveCoding_LongTailedRecognition (no license), jangho2001us/PredictiveCoding_FewShotRecognition (no license)

Status: dead link

[40461] doi:10.3389/fnetp.2022.946380 [paper, data]

The structure of anticorrelated networks in the human brain.

Journal: Frontiers in network physiology

Status: data only, 1 dataset cited

[40462] doi:10.3389/fped.2022.1062766 [paper, repository]

S945L-CFTR molecular dynamics, functional characterization and tezacaftor/ivacaftor efficacy <i>in vivo</i> and <i>in vitro</i> in matched pediatric patient-derived cell models.

Journal: Frontiers in pediatrics

Authors' code: miro-astore/mdanalysis_scripts (MIT), miro-astore/gromacs_scripts (MIT), miro-astore/plumed_scripts (MIT)

Status: code verified, 100 files readable

[40463] doi:10.3390/children9111760 [paper, data]

Visual Feedback and Virtual Reality in Gait Rehabilitation of Hemiparetic Children and Teenagers after Acquired Brain Injury: A Pilot Study.

Journal: Children (Basel, Switzerland)

Status: data only, 1 dataset cited

[40464] doi:10.3390/diagnostics12112815 [paper, data]

BCNet: A Deep Learning Computer-Aided Diagnosis Framework for Human Peripheral Blood Cell Identification.

Journal: Diagnostics (Basel, Switzerland)

Status: data only, 1 dataset cited

[40465] doi:10.3758/s13415-022-01047-3 [paper, data]

Investigating the role of contextual cues and interhemispheric inhibitory mechanisms in response-selective stopping: a TMS study.

Journal: Cognitive, affective & behavioral neuroscience

Status: code on request, 1 dataset cited

[40466] doi:10.7554/elife.76120 [paper, repository]

Binary and analog variation of synapses between cortical pyramidal neurons.

Journal: eLife

Authors' code: seung-lab/kimimaro (GPL-3.0), sdorkenw/MeshParty (Apache-2.0), seung-lab (no license), seung-lab/AnnotationPipelineOverview (no license), nicholasturner1/PyTorchUtils (MIT), nicholasturner1/Synaptor (MIT), Zenodo 3710398 (Apache-2.0), seung-lab/Alembic (MIT), Zenodo 5671443 (other-open), seung-lab/cloud-volume (BSD-3-Clause)

Status: code verified, 534 files readable, 12 matches

Tuesday, 15 November 2022 (26 papers)

[40467] doi:10.1007/s12021-022-09613-3 [paper, repository]

Deconvolution of the Functional Ultrasound Response in the Mouse Visual Pathway Using Block-Term Decomposition.

Journal: Neuroinformatics

Authors' code: ayerol/btd_deconv (no license)

Status: code verified, 16 files readable, 8 matches

[40468] doi:10.1016/j.crmeth.2022.100341 [paper, data]

Derivation of nociceptive sensory neurons from hiPSCs with early patterning and temporally controlled <i>NEUROG2</i> overexpression.

Journal: Cell reports methods

Status: code on request, 1 dataset cited

[40469] doi:10.1016/j.dcn.2022.101175 [paper, repository]

Socioeconomic dissociations in the neural and cognitive bases of reading disorders.

Journal: Developmental cognitive neuroscience

Authors' code: OSF zk8f3 (no license)

Status: code verified, 11 files readable, 5 matches

[40470] doi:10.1016/j.neuroimage.2022.119736 [paper, repository]

Relationship of prefrontal brain lateralization to optimal cognitive function differs with age.

Journal: NeuroImage

Authors' code: OSF vr6qj (no license), identifiers.org/neurovault.collection:13143 (no license)

Status: code verified, 1 file readable, 2 matches

[40471] doi:10.1016/j.neuroimage.2022.119754 [paper, repository]

A large and rich EEG dataset for modeling human visual object recognition.

Journal: NeuroImage

Authors' code: gifale95/eeg_encoding (CC-BY-NC-4.0)

Status: code verified, 51 files readable, 25 matches

[40472] doi:10.1016/j.neuroimage.2022.119755 [paper, repository]

Endoscopic imaging of white matter fiber tracts using polarization-sensitive optical coherence tomography.

Journal: NeuroImage

Authors' code: CBORT-NCBIB/oct-cbort (MIT)

Status: code verified, 60 files readable, 4 matches

[40473] doi:10.1016/j.nicl.2022.103269 [paper, repository]

Longer illness duration is associated with greater individual variability in functional brain activity in Schizophrenia, but not bipolar disorder.

Journal: NeuroImage. Clinical

Authors' code: juliagallucci/illness_duration_individual_variability_SCZ (no license)

Status: empty repository, 1 file readable

[40474] doi:10.1016/j.ynirp.2022.100147 [paper, repository]

Replication of neural responses to monetary incentives and exploration of reward-influenced network connectivity in fibromyalgia.

Journal: Neuroimage. Reports

Authors' code: kellyhennigan/MID_processing_example (no license)

Status: code verified, 17 files readable, 4 matches

[40475] doi:10.1038/s41467-022-34204-w [paper, repository]

Ordovician opabiniid-like animals and the role of the proboscis in euarthropod head evolution.

Journal: Nature communications

Authors' code: OSF 4ftzy (no license)

Status: code verified, 3 files readable

[40476] doi:10.1038/s41467-022-34667-x [paper, repository]

Metagenomics of Parkinson's disease implicates the gut microbiome in multiple disease mechanisms.

Journal: Nature communications

Authors' code: Zenodo 7246185 (CC-BY-4.0), huttenhower.sph.harvard.edu/humann_data (no license)

Status: code verified, 1 file readable, 17 matches

[40477] doi:10.1038/s41598-022-21824-x [paper]

EEG analysis of the visual motion activated vection network in left- and right-handers.

Journal: Scientific reports

Status: code on request

[40478] doi:10.1111/cns.14014 [paper, data]

The sound stimulation method and EEG change analysis for development of digital therapeutics that can stimulate the nervous system: Cortical activation and drug substitution potential.

Journal: CNS neuroscience & therapeutics

Status: data only, 1 dataset cited

[40479] doi:10.1155/2022/8708312 [paper, data]

The tRNA-Cys-GCA Derived tsRNAs Suppress Tumor Progression of Gliomas via Regulating VAV2.

Journal: Disease markers

Status: data only, 1 dataset cited

[40480] doi:10.1172/jci146095 [paper, repository]

Neonatal hyperoxia in mice triggers long-term cognitive deficits via impairments in cerebrovascular function and neurogenesis.

Journal: The Journal of clinical investigation

Authors' code: chcomin/Neonatal-hyperoxia (GPL-3.0)

Status: code verified, 2 files readable

[40481] doi:10.1172/jci154229 [paper, data]

H3.3-G34 mutations impair DNA repair and promote cGAS/STING-mediated immune responses in pediatric high-grade glioma models.

Journal: The Journal of clinical investigation

Status: data only, 1 dataset cited

[40482] doi:10.1186/s12868-022-00745-5 [paper, data]

Chronic constriction injury-induced changes in circular RNA expression profiling of the dorsal root ganglion in a rat model of neuropathic pain.

Journal: BMC neuroscience

Status: data only, 4 datasets cited

[40483] doi:10.1186/s40945-022-00151-4 [paper, repository]

Spreading the word: pediatric pain education from treatment to prevention.

Journal: Archives of physiotherapy

Authors' code: youtube.com/watch (no license)

Status: code verified

[40484] doi:10.1212/ne9.0000000000200022 [paper, repository]

Curriculum Innovations: High-Fidelity Simulation of Acute Neurology Enhances Rising Resident Confidence: Results From a Multicohort Study.

Journal: Neurology. Education

Authors' code: links.lww.com/ne9/a5 (no license), links.lww.com/ne9/a6 (no license)

Status: code verified

[40485] doi:10.1523/eneuro.0124-22.2022 [paper, repository]

Examination of Diurnal Variation and Sex Differences in Hippocampal Neurophysiology and Spatial Memory.

Journal: eNeuro

Authors' code: phillipsml/dlc-novelobject (no license)

Status: code verified, 3 files readable

[40486] doi:10.15252/embj.2021110565 [paper, repository]

High-throughput morphometric and transcriptomic profiling uncovers composition of naïve and sensory-deprived cortical cholinergic VIP/CHAT neurons.

Journal: The EMBO journal

Authors' code: nadavyayon/Intensify3D (no license), nadavyayon/PopRec (no license), ebi.ac.uk/fg/annotare (no license)

Status: code verified, 10 files readable, 1 match

[40487] doi:10.3389/fncel.2022.998408 [paper, repository]

Single nuclei RNA sequencing investigation of the Purkinje cell and glial changes in the cerebellum of transgenic Spinocerebellar ataxia type 1 mice.

Journal: Frontiers in cellular neuroscience

Authors' code: yingzhang121/snSeq_SCA1 (no license)

Status: code verified, 8 files readable, 2 matches

[40488] doi:10.3389/fncom.2022.1004988 [paper, data]

GAPCNN with HyPar: Global Average Pooling convolutional neural network with novel NNLU activation function and HYBRID parallelism.

Journal: Frontiers in computational neuroscience

Status: data only, 4 datasets cited

[40489] doi:10.3390/brainsci12111555 [paper, repository]

Altered Functional Connectivity of Basal Ganglia in Mild Cognitive Impairment and Alzheimer's Disease.

Journal: Brain sciences

Authors' code: fil.ion.ucl.ac.uk/spm (no license), restfmri.net (no license)

Status: code verified

[40490] doi:10.3390/ijms232214085 [paper, data]

Modulation of Glia Activation by TRPA1 Antagonism in Preclinical Models of Migraine.

Journal: International journal of molecular sciences

Status: data only, 2 datasets cited

[40491] doi:10.3390/insects13111056 [paper, data]

Identification and Field Evaluation of Sex Pheromone Components and Its Antagonist Produced by a Major Tea Pest, <i>Archips strojny</i> (Lepidoptera: Tortricidae).

Journal: Insects

Status: data only, 1 dataset cited

[40492] doi:10.7554/elife.81298 [paper, repository]

Endocytic trafficking determines cellular tolerance of presynaptic opioid signaling.

Journal: eLife

Authors' code: Zenodo 6954811 (CC-BY-4.0), Zenodo 7226372 (CC-BY-4.0)

Status: code verified, 30 files readable, 14 matches

Monday, 14 November 2022 (30 papers)

[40493] doi:10.1002/hbm.26138 [paper, repository]

Generalized models for quantifying laterality using functional transcranial Doppler ultrasound.

Journal: Human brain mapping

Authors' code: OSF gw4en (no license)

Status: code verified, 3 files readable, 6 matches

[40494] doi:10.1016/j.crmeth.2022.100336 [paper]

Optogenetic induction of hibernation-like state with modified human Opsin4 in mice.

Journal: Cell reports methods

Status: code on request

[40495] doi:10.1038/s41467-022-34410-6 [paper, repository]

Intrinsic brain dynamics in the Default Mode Network predict involuntary fluctuations of visual awareness.

Journal: Nature communications

Authors' code: Aubrey-Lyu/BR-project (MIT)

Status: empty repository, 2 files readable

[40496] doi:10.1038/s41467-022-34457-5 [paper]

Number selective sensorimotor neurons in the crow translate perceived numerosity into number of actions.

Journal: Nature communications

Status: code on request

[40497] doi:10.1038/s41598-022-23477-2 [paper, repository]

Single-cell transcriptomics defines an improved, validated monoculture protocol for differentiation of human iPSC to microglia.

Journal: Scientific reports

Authors' code: TrynkaLab/washer_et_al_microglia_media (no license)

Status: code verified, 9 files readable, 10 matches

[40498] doi:10.1038/s42003-022-04000-9 [paper, data]

A modeling framework for determining modulation of neural-level tuning from non-invasive human fMRI data.

Journal: Communications biology

Status: data only, 1 dataset cited

[40499] doi:10.1038/s42003-022-04165-3 [paper]

Neurocomputational mechanisms of affected beliefs.

Journal: Communications biology

Status: code on request

[40500] doi:10.1038/s42003-022-04213-y [paper, repository]

Model simulations unveil the structure-function-dynamics relationship of the cerebellar cortical microcircuit.

Journal: Communications biology

Authors' code: dbbs-lab/arborize (GPL-3.0), Helveg/patch (MIT), dbbs-lab/glia (GPL-3.0), dbbs-lab/bsb (GPL-3.0), Zenodo 7243999 (other-open), Helveg/deschepper-etal-2022-source (no license), Zenodo 15366846 (GPL-3.0), Zenodo 15366847 (GPL-3.0)

Status: code verified, 790 files readable, 40 matches

[40501] doi:10.1038/s42003-022-04221-y [paper, repository]

Representations and decodability of diverse cognitive functions are preserved across the human cortex, cerebellum, and subcortex.

Journal: Communications biology

Authors' code: gallantlab/motion_energy_matlab (BSD-2-Clause), OSF ea2jc (no license)

Status: code verified, 71 files readable, 15 matches

[40502] doi:10.1073/pnas.2212004119 [paper, repository]

Lactate supply overtakes glucose when neural computational and cognitive loads scale up.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: gitlab.inria.fr/hberry/anls_stdp (CC0-1.0)

Status: code verified, 9 files readable

[40503] doi:10.1101/2022.11.08.22282033 [paper, data]

The phenotypic spectrum of terminal and subterminal 6p deletions based on a social media-derived cohort and literature review

Journal: medRxiv (preprint)

Status: data only, 2 datasets cited

[40504] doi:10.1159/000528051 [paper, repository]

Large Common Mitochondrial DNA Deletions Are Associated with a Mitochondrial SNP T14798C Near the 3' Breakpoints.

Journal: Complex psychiatry

Authors' code: brookehjelm/Splice-Break2 (no license)

Status: code verified, 1 file readable

[40505] doi:10.1186/s12974-022-02624-6 [paper]

Neuroinflammation regulates the balance between hippocampal neuron death and neurogenesis in an ex vivo model of thiamine deficiency.

Journal: Journal of neuroinflammation

Status: data only

[40506] doi:10.1186/s12987-022-00387-z [paper, data]

Age dependent contribution of entry via the CSF to the overall brain entry of small and large hydrophilic markers.

Journal: Fluids and barriers of the CNS

Status: data only, 4 datasets cited

[40507] doi:10.1371/journal.pcbi.1010653 [paper, repository]

Statistical perspective on functional and causal neural connectomics: The Time-Aware PC algorithm.

Journal: PLoS computational biology

Authors' code: shlizee/TimeAwarePC (MIT)

Status: code verified, 38 files readable, 7 matches

[40508] doi:10.1371/journal.pone.0277414 [paper, data]

Functional dissociation along the rostrocaudal axis of Japanese quail hippocampus.

Journal: PloS one

Status: data only, 1 dataset cited

[40509] doi:10.1371/journal.pone.0277555 [paper, data]

Textural feature based intelligent approach for neurological abnormality detection from brain signal data.

Journal: PloS one

Status: data only, 1 dataset cited

[40510] doi:10.1523/eneuro.0212-22.2022 [paper, repository]

Structural and Functional MRI Data Differentially Predict Chronological Age and Behavioral Memory Performance.

Journal: eNeuro

Authors' code: JoramSoch/ML4ML (MIT)

Status: code verified, 15 files readable, 8 matches

[40511] doi:10.15252/emmm.202216364 [paper, data]

Depressive patient-derived GABA interneurons reveal abnormal neural activity associated with HTR2C.

Journal: EMBO molecular medicine

Status: data only, 1 dataset cited

[40512] doi:10.26508/lsa.202201456 [paper]

Loss of autism-candidate CHD8 perturbs neural crest development and intestinal homeostatic balance.

Journal: Life science alliance

Status: code on request

[40513] doi:10.3389/fncom.2022.1059565 [paper, data]

A multi-frame network model for predicting seizure based on sEEG and iEEG data.

Journal: Frontiers in computational neuroscience

Status: data only, 2 datasets cited

[40514] doi:10.3389/fnins.2022.940972 [paper, repository]

Brain2Pix: Fully convolutional naturalistic video frame reconstruction from brain activity.

Journal: Frontiers in neuroscience

Authors' code: neuralcodinglab/brain2pix (no license)

Status: code verified, 19 files readable, 4 matches

[40515] doi:10.3389/fnins.2022.981801 [paper, data]

Animal models of developmental dyslexia.

Journal: Frontiers in neuroscience

Status: data only, 2 datasets cited

[40516] doi:10.3389/fnmol.2022.1023492 [paper, data]

Cool and warm ionotropic receptors control multiple thermotaxes in <i>Drosophila</i> larvae.

Journal: Frontiers in molecular neuroscience

Status: data only, 1 dataset cited

[40517] doi:10.3389/fvets.2022.1042445 [paper, data]

The combination of SMRT sequencing and Illumina sequencing highlights organ-specific and age-specific expression patterns of miRNAs in Sika Deer.

Journal: Frontiers in veterinary science

Status: data only, 1 dataset cited

[40518] doi:10.3390/life12111884 [paper]

Human iPSC-Derived Cortical Neurons Display Homeostatic Plasticity.

Journal: Life (Basel, Switzerland)

Status: code on request

[40519] doi:10.4049/jimmunol.2200609 [paper, data]

Diversity in Cortical Thymic Epithelial Cells Occurs through Loss of a Foxn1-Dependent Gene Signature Driven by Stage-Specific Thymocyte Cross-Talk.

Journal: Journal of immunology (Baltimore, Md. : 1950)

Status: data only, 1 dataset cited

[40520] doi:10.7554/elife.77216 [paper, repository]

Self-configuring feedback loops for sensorimotor control.

Journal: eLife

Authors' code: sergio.verduzco/public_materials (no license)

Status: code verified, 26 files readable, 6 matches

[40521] doi:10.7554/elife.82531 [paper, repository]

Fast rule switching and slow rule updating in a perceptual categorization task.

Journal: eLife

Authors' code: buschman-lab/FastRuleSwitchingSlowRuleUpdating (MIT)

Status: empty repository, 1 file readable

[40522] doi:10.7717/peerj.14249 [paper, data]

Cerebral neurovascular alterations in stable chronic obstructive pulmonary disease: a preliminary fMRI study.

Journal: PeerJ

Status: data only, 8 datasets cited

Sunday, 13 November 2022 (3 papers)

[40523] doi:10.1016/j.neuroimage.2022.119749 [paper, repository]

Late dominance of the right hemisphere during narrative comprehension.

Journal: NeuroImage

Authors' code: vyoussofzadeh/DICS-beamformer-for-Brainstorm (no license)

Status: code verified, 5 files readable, 2 matches

[40524] doi:10.1016/j.neuroimage.2022.119750 [paper, repository]

Comparing myelin-sensitive magnetic resonance imaging measures and resulting g-ratios in healthy and multiple sclerosis brains.

Journal: NeuroImage

Authors' code: mriresearch.med.ubc.ca/news-projects/myelin-water-fraction (no license), MNagtegaal/SPIJN (GPL-3.0)

Status: code verified, 4 files readable, 1 match

[40525] doi:10.1016/j.nicl.2022.103266 [paper, repository]

Parkinson's disease is characterized by sub-second resting-state spatio-oscillatory patterns: A contribution from deep convolutional neural network.

Journal: NeuroImage. Clinical

Authors' code: Behzad-Iravani/DL-on-PD-oscillaroy-topographic-pattern (CC0-1.0)

Status: code verified, 3 files readable, 4 matches

Saturday, 12 November 2022 (13 papers)

[40526] doi:10.1016/j.nicl.2022.103264 [paper, data]

Neural processing of self-touch and other-touch in anorexia nervosa and autism spectrum condition.

Journal: NeuroImage. Clinical

Status: data only, 1 dataset cited

[40527] doi:10.1038/s41467-022-34452-w [paper, repository]

Real-time brain-machine interface in non-human primates achieves high-velocity prosthetic finger movements using a shallow feedforward neural network decoder.

Journal: Nature communications

Authors' code: chestekresearch.engin.umich.edu/data-and-resources (no license)

Status: code verified

[40528] doi:10.1038/s41467-022-34513-0 [paper, repository]

Long-range GABAergic projections contribute to cortical feedback control of sensory processing.

Journal: Nature communications

Authors' code: camille-lab/GABAergicOlfactoryFeedback (CC0-1.0)

Status: code verified, 9 files readable, 3 matches

[40529] doi:10.1038/s41467-022-34590-1 [paper, repository]

Identification of visual cortex cell types and species differences using single-cell RNA sequencing.

Journal: Nature communications

Authors' code: haozhaozhe/FM_V1 (MIT)

Status: code verified, 8 files readable, 10 matches

[40530] doi:10.1038/s41467-022-34604-y [paper, data]

A multivesicular body-like organelle mediates stimulus-regulated trafficking of olfactory ciliary transduction proteins.

Journal: Nature communications

Status: data only, 2 datasets cited

[40531] doi:10.1038/s41467-022-34720-9 [paper, repository]

REM sleep is associated with distinct global cortical dynamics and controlled by occipital cortex.

Journal: Nature communications

Authors' code: xulabsleep/MesoscaleImagingInSleep (no license)

Status: empty repository, 1 file readable

[40532] doi:10.1038/s41539-022-00146-7 [paper, repository]

Cognitive training enhances growth mindset in children through plasticity of cortico-striatal circuits.

Journal: NPJ science of learning

Authors' code: scsnl/Chen_npjSoL_2022 (no license)

Status: code verified, 20 files readable, 5 matches

[40533] doi:10.1038/s41598-022-21801-4 [paper, repository]

Meta-analysis of the functional neuroimaging literature with probabilistic logic programming.

Journal: Scientific reports

Authors' code: NeuroLang/NeuroLang (BSD-3-Clause)

Status: code verified, 409 files readable, 8 matches

[40534] doi:10.1038/s41598-022-24127-3 [paper, repository]

Adaptive coding occurs in object categorization and may not be associated with schizotypal personality traits.

Journal: Scientific reports

Authors' code: smfleming/NoisyFaces (no license)

Status: code verified, 4 files readable

[40535] doi:10.1038/s41598-022-24156-y [paper]

Effects of optogenetic inhibition of a small fraction of parvalbumin-positive interneurons on the representation of sensory stimuli in mouse barrel cortex.

Journal: Scientific reports

Status: code on request

[40536] doi:10.1093/bioadv/vbac086 [paper, data]

Synaptome.db: a bioconductor package for synaptic proteomics data.

Journal: Bioinformatics advances

Status: data only, 1 dataset cited

[40537] doi:10.1186/s13014-022-02146-8 [paper, data]

Functional brain imaging interventions for radiation therapy planning in patients with glioblastoma: a systematic review.

Journal: Radiation oncology (London, England)

Status: data only, 1 dataset cited

[40538] doi:10.3390/cells11223581 [paper, data]

Cortical Pathology in Vanishing White Matter.

Journal: Cells

Status: data only, 1 dataset cited

Friday, 11 November 2022 (24 papers, 6 on this page)

[40539] doi:10.1007/s12035-022-03043-7 [paper, data]

Dorsoventral Arrangement of Lateral Hypothalamus Populations in the Mouse Hypothalamus: a Prosomeric Genoarchitectonic Analysis.

Journal: Molecular neurobiology

Status: data only, 10 datasets cited

[40540] doi:10.1016/j.bbiosy.2022.100070 [paper, repository]

Neural progenitor cell-derived extracellular matrix as a new platform for neural differentiation of human induced pluripotent stem cells.

Journal: Biomaterials and biosystems

Authors' code: sourceforge.net/fcsalyzer (no license)

Status: code verified

[40541] doi:10.1016/j.jtocrr.2022.100435 [paper, repository]

Genomic Profiling Identifies Putative Pathogenic Alterations in NSCLC Brain Metastases.

Journal: JTO clinical and research reports

Authors' code: ljwharbers/metastatic_lungcancer (no license)

Status: code verified, 4 files readable, 5 matches

[40542] doi:10.1016/j.neuron.2022.10.028 [paper, data]

Driving axon regeneration by orchestrating neuronal and non-neuronal innate immune responses via the IFNγ-cGAS-STING axis.

Journal: Neuron

Status: code on request, 1 dataset cited

[40543] doi:10.1016/j.nicl.2022.103265 [paper, data]

Right hemispheric white matter hyperintensities improve the prediction of spatial neglect severity in acute stroke.

Journal: NeuroImage. Clinical

Status: data only, 1 dataset cited

[40544] doi:10.1016/j.xpro.2022.101837 [paper, repository]

Sparse postnatal labeling and quantification of superficial cortical cell synapses in the mouse neocortex.

Journal: STAR protocols

Authors' code: Zenodo 6980507 (other-open), argunsah/punctaDensity (GPL-3.0)

Status: code verified, 86 files readable, 6 matches

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