Every paper, by date: page 183

44,644 papers with a page: 24,189 with their authors' code, 4,955 with code on request, 15,495 with data only. The most recent first, 224 a page. Page 183 of 200: 3 November 2022 to 26 October 2022.

Thursday, 3 November 2022 (30 papers, 1 on this page)

[40769] doi:10.7554/elife.76506 [paper, repository]

Mesoscale cortex-wide neural dynamics predict self-initiated actions in mice several seconds prior to movement.

Journal: eLife

Authors' code: catubc/widefield (MIT), catubc/sta_maps (no license), catubc/elife_self_init_paper (no license)

Status: code verified, 188 files readable, 11 matches

Wednesday, 2 November 2022 (31 papers)

[40770] doi:10.1007/s12035-022-03095-9 [paper, data]

Cilia in the Striatum Mediate Timing-Dependent Functions.

Journal: Molecular neurobiology

Status: data only, 4 datasets cited

[40771] doi:10.1016/j.isci.2022.105476 [paper]

Parkinson disease-associated Leucine-rich repeat kinase regulates UNC-104-dependent axonal transport of Arl8-positive vesicles in <i>Drosophila</i>.

Journal: iScience

Status: code on request

[40772] doi:10.1016/j.isci.2022.105481 [paper, data]

GPI-anchored ligand-BioID2-tagging system identifies Galectin-1 mediating Zika virus entry.

Journal: iScience

Status: code on request, 1 dataset cited

[40773] doi:10.1016/j.neuroimage.2022.119720 [paper, data]

An orderly sequence of autonomic and neural events at transient arousal changes.

Journal: NeuroImage

Status: code on request, 1 dataset cited

[40774] doi:10.1016/j.pneurobio.2022.102372 [paper, repository]

Oscillations without cortex: Working memory modulates brainwaves in the endbrain of crows.

Journal: Progress in neurobiology

Authors' code: ngl.psy.ruhr-uni-bochum.de/ngl/shareware (no license)

Status: code verified

[40775] doi:10.1038/s41377-022-00975-6 [paper, repository]

Experimentally unsupervised deconvolution for light-sheet microscopy with propagation-invariant beams.

Journal: Light, science & applications

Authors' code: eriklindernoren/PyTorch-GAN (MIT), philipwijesinghe/learned-deconvolution (MIT)

Status: code verified, 101 files readable, 7 matches

[40776] doi:10.1038/s41467-022-34184-x [paper]

Erratic and blood vessel-guided migration of astrocyte progenitors in the cerebral cortex.

Journal: Nature communications

Status: code on request

[40777] doi:10.1038/s41467-022-34412-4 [paper, data]

Reactive astrocytes transduce inflammation in a blood-brain barrier model through a TNF-STAT3 signaling axis and secretion of alpha 1-antichymotrypsin.

Journal: Nature communications

Status: data only, 6 datasets cited

[40778] doi:10.1038/s41586-022-05374-w [paper, data]

Nociceptor neurons affect cancer immunosurveillance.

Journal: Nature

Status: data only, 1 dataset cited

[40779] doi:10.1038/s41586-022-05377-7 [paper, repository]

Broad transcriptomic dysregulation occurs across the cerebral cortex in ASD.

Journal: Nature

Authors' code: dhglab/Broad-transcriptomic-dysregulation-across-the-cerebral-cortex-in-ASD (no license), Zenodo 23432723 (MIT), Zenodo 23432724 (MIT)

Status: code verified, 82 files readable, 13 matches

[40780] doi:10.1038/s41586-022-05378-6 [paper, repository]

Entorhinal cortex directs learning-related changes in CA1 representations.

Journal: Nature

Authors' code: Zenodo 6998795 (other-open), mageelabgit/mageelab-public (MIT)

Status: code verified, 8 files readable

[40781] doi:10.1073/pnas.2119044119 [paper]

Rapid homeostatic modulation of transsynaptic nanocolumn rings.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: code on request

[40782] doi:10.1073/pnas.2202024119 [paper, repository]

Linking global top-down views to first-person views in the brain.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: Zenodo 7121464 (other-open), Zenodo 7114757 (other-open), jkrichma/linking_tdv_fpv (no license), karlxing/link-views-in-brain (no license)

Status: code verified, 10 files readable, 3 matches

[40783] doi:10.1073/pnas.2206704119 [paper, repository]

Adult neurogenesis acts as a neural regularizer.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: linamnt/dnn-neurogenesis (BSD-3-Clause), facebook/Ax (MIT)

Status: code verified, 756 files readable, 3 matches

[40784] doi:10.1073/pnas.2214441119 [paper, repository]

Flexible integration of continuous sensory evidence in perceptual estimation tasks.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: wimmerlab/flexbump (GPL-3.0)

Status: code verified, 30 files readable, 9 matches

[40785] doi:10.1093/braincomms/fcac282 [paper, repository]

Unravelling the relationship between amyloid accumulation and brain network function in normal aging and very mild cognitive decline: a longitudinal analysis.

Journal: Brain communications

Authors' code: ysu001/PUP (BSD-3-Clause), gemmamoffat/OASIS3_LMEanalyses (no license)

Status: code verified, 282 files readable, 4 matches

[40786] doi:10.1098/rsos.221083 [paper, data]

Waking inactivity as a welfare indicator in laboratory mice: investigating postures, facial expressions and depression-like states.

Journal: Royal Society open science

Status: data only, 7 datasets cited

[40787] doi:10.1098/rspb.2022.1590 [paper, repository]

Brain stimulation reveals distinct motives underlying reciprocal punishment and reward.

Journal: Proceedings. Biological sciences

Authors' code: OSF ab89m (no license), doi:10.6084/m9.figshare.c.6214785 (no license)

Status: code verified, 1 file readable, 1 match

[40788] doi:10.1126/sciadv.abo2416 [paper, data]

Homologous gene regulatory networks control development of apical organs and brains in Bilateria.

Journal: Science advances

Status: data only, 1 dataset cited

[40789] doi:10.1126/sciadv.abo5442 [paper, repository]

Single-cell multiomics identifies clinically relevant mesenchymal stem-like cells and key regulators for MPNST malignancy.

Journal: Science advances

Authors' code: jumphone/scref (MIT)

Status: code verified, 65 files readable, 2 matches

[40790] doi:10.1126/sciadv.abq1263 [paper, data]

Tissue-wide genetic and cellular landscape shapes the execution of sequential PRC2 functions in neural stem cell lineage progression.

Journal: Science advances

Status: data only, 1 dataset cited

[40791] doi:10.1152/jn.00066.2022 [paper, repository]

Population burst propagation across interacting areas of the brain.

Journal: Journal of neurophysiology

Authors' code: AlbertYuChen/IPRF (no license)

Status: code verified, 18 files readable, 5 matches

[40792] doi:10.1159/000527878 [paper, data]

New View on the Impact of the Low-Frequency Electromagnetic Field (50 Hz) on Stress Responses: Hormesis Effect.

Journal: Neuroendocrinology

Status: data only, 1 dataset cited

[40793] doi:10.1371/journal.pcbi.1010662 [paper, repository]

Strength-dependent perturbation of whole-brain model working in different regimes reveals the role of fluctuations in brain dynamics.

Journal: PLoS computational biology

Authors' code: yonisanzperl/on_the_edge (no license)

Status: code verified, 11 files readable

[40794] doi:10.1371/journal.pone.0276378 [paper, repository]

Applying a deep convolutional neural network to monitor the lateral spread response during microvascular surgery for hemifacial spasm.

Journal: PloS one

Authors' code: keisen/tf-keras-vis (MIT)

Status: code verified, 45 files readable, 2 matches

[40795] doi:10.3389/fnimg.2022.1031253 [paper, repository]

Automatic measure and normalization of spinal cord cross-sectional area using the pontomedullary junction.

Journal: Frontiers in neuroimaging

Authors' code: neuropoly/spinalcordtoolbox (LGPL-3.0)

Status: code verified, 232 files readable, 5 matches

[40796] doi:10.3389/fpsyt.2022.1037503 [paper, data]

Why not try to predict autism spectrum disorder with crucial biomarkers in cuproptosis signaling pathway?

Journal: Frontiers in psychiatry

Status: data only, 1 dataset cited

[40797] doi:10.3390/ijerph192114335 [paper, data]

Dorsolateral Prefrontal Activation in Emotional Autobiographical Task in Depressed and Anxious College Students: An fNIRS Study.

Journal: International journal of environmental research and public health

Status: data only, 1 dataset cited

[40798] doi:10.7554/elife.79322 [paper, repository]

Functional interactions among neurons within single columns of macaque V1.

Journal: eLife

Authors' code: et22/functional_connections_macaque_v1 (MIT)

Status: code verified, 28 files readable, 4 matches

[40799] doi:10.7554/elife.80361 [paper, repository]

Visual experience has opposing influences on the quality of stimulus representation in adult primary visual cortex.

Journal: eLife

Authors' code: bjjeon5111/BCI_V1 (MIT)

Status: code verified, 5 files readable, 2 matches

[40800] doi:10.7554/elife.82143 [paper, repository]

Altered basal ganglia output during self-restraint.

Journal: eLife

Authors' code: figshare 20409858 (CC-BY-4.0)

Status: code verified, 9 files readable

Tuesday, 1 November 2022 (75 papers)

[40801] doi:10.1002/ctm2.1076 [paper, data]

Mass spectrometry-based proteomics analysis of human globus pallidus from progressive supranuclear palsy patients discovers multiple disease pathways.

Journal: Clinical and translational medicine

Status: data only, 3 datasets cited

[40802] doi:10.1002/ctm2.1101 [paper]

Single-cell RNA sequencing reveals cellular and molecular reprograming landscape of gliomas and lung cancer brain metastases.

Journal: Clinical and translational medicine

Status: data only

[40803] doi:10.1002/hbm.26134 [paper, repository]

Evaluating the reliability, validity, and utility of overlapping networks: Implications for network theories of cognition.

Journal: Human brain mapping

Authors' code: savannahcookson/NetChar (GPL-3.0), premgopalan/svinet (GPL-3.0)

Status: code verified, 42 files readable, 2 matches

[40804] doi:10.1002/jev2.12276 [paper, data]

Extracellular vesicles derived from the choroid plexus trigger the differentiation of neural stem cells.

Journal: Journal of extracellular vesicles

Status: data only, 1 dataset cited

[40805] doi:10.1007/s00426-021-01591-6 [paper, data]

Modelling concrete and abstract concepts using brain-constrained deep neural networks.

Journal: Psychological research

Status: data only, 2 datasets cited

[40806] doi:10.1016/j.celrep.2022.111574 [paper]

Disruption of mTORC1 rescues neuronal overgrowth and synapse function dysregulated by Pten loss.

Journal: Cell reports

Status: code on request

[40807] doi:10.1016/j.celrep.2022.111580 [paper]

Multi-omic profiling reveals the ataxia protein sacsin is required for integrin trafficking and synaptic organization.

Journal: Cell reports

Status: code on request

[40808] doi:10.1016/j.celrep.2022.111585 [paper, data]

Spatiotemporal and genetic regulation of A-to-I editing throughout human brain development.

Journal: Cell reports

Status: data only, 1 dataset cited

[40809] doi:10.1016/j.celrep.2022.111616 [paper, repository]

Stable, interactive modulation of neuronal oscillations produced through brain-machine equilibrium.

Journal: Cell reports

Authors' code: colinmcn.github.io/oscilltrack (no license)

Status: code verified

[40810] doi:10.1016/j.celrep.2022.111627 [paper]

Large-scale all-optical dissection of motor cortex connectivity shows a segregated organization of mouse forelimb representations.

Journal: Cell reports

Status: code on request

[40811] doi:10.1016/j.celrep.2022.111643 [paper]

Hippocampal parvalbumin interneurons play a critical role in memory development.

Journal: Cell reports

Status: code on request

[40812] doi:10.1016/j.celrep.2022.111646 [paper, repository]

Spread of pathological human Tau from neurons to oligodendrocytes and loss of high-firing pyramidal neurons in aging mice.

Journal: Cell reports

Authors' code: denisecailab/ezTrack (GPL-3.0), neuralcircuitsTV/lfp-juxta (no license)

Status: code verified, 13 files readable, 3 matches

[40813] doi:10.1016/j.celrep.2022.111648 [paper, repository]

Trigeminal afferents sense locomotion-related meningeal deformations.

Journal: Cell reports

Authors' code: ablaeser/LocomotionAnalysis (GPL-3.0), ablaeser/MovieProcessing (GPL-3.0), ablaeser/CalciumAnalysis (GPL-3.0)

Status: code verified, 184 files readable, 15 matches

[40814] doi:10.1016/j.celrep.2022.111649 [paper, repository]

Developmental spontaneous activity promotes formation of sensory domains, frequency tuning and proper gain in central auditory circuits.

Journal: Cell reports

Authors' code: ckersbe1/Cochlea-spont-activity-development-MS (no license), Zenodo 7195670 (other-open)

Status: code verified, 602 files readable, 6 matches

[40815] doi:10.1016/j.celrep.2022.111695 [paper, repository]

Exercise increases information content and affects long-term stability of hippocampal place codes.

Journal: Cell reports

Authors' code: Zenodo 7229556 (other-open), zivlab/CellReg (GPL-2.0), zivlab/hpc_physical_exercise (no license)

Status: code verified, 68 files readable, 5 matches

[40816] doi:10.1016/j.celrep.2022.111696 [paper]

Loss of functional System x-c uncouples aberrant postnatal neurogenesis from epileptogenesis in the hippocampus of Kcna1-KO mice.

Journal: Cell reports

Status: code on request

[40817] doi:10.1016/j.celrep.2022.111698 [paper]

Acute changes in systemic glycemia gate access and action of GLP-1R agonist on brain structures controlling energy homeostasis.

Journal: Cell reports

Status: code on request

[40818] doi:10.1016/j.celrep.2022.111700 [paper, repository]

Task-selective place cells show behaviorally driven dynamics during learning and stability during memory recall.

Journal: Cell reports

Authors' code: Zenodo 7226595 (other-open), rzemla/paper_analysis (no license), basulab-nyu/zemla_moore_hopkins_basu_2022 (no license)

Status: code verified, 2,562 files readable, 19 matches

[40819] doi:10.1016/j.celrep.2022.111709 [paper]

Fibroblasts repair blood-brain barrier damage and hemorrhagic brain injury via TIMP2.

Journal: Cell reports

Status: code on request

[40820] doi:10.1016/j.devcel.2022.10.008 [paper, data]

Autophagy promotes cell survival by maintaining NAD levels.

Journal: Developmental cell

Status: data only, 1 dataset cited

[40821] doi:10.1016/j.heliyon.2022.e11348 [paper, data]

Dose-related shifts in proteome and function of extracellular vesicles secreted by fetal neural stem cells following chronic alcohol exposure.

Journal: Heliyon

Status: data only, 1 dataset cited

[40822] doi:10.1016/j.neuron.2022.10.008 [paper]

Inhibitory Kcnip2 neurons of the spinal dorsal horn control behavioral sensitivity to environmental cold.

Journal: Neuron

Status: code on request

[40823] doi:10.1016/j.nsa.2022.101015 [paper]

Common changes in rat cortical gene expression after chronic treatment with chlorpromazine and haloperidol may be related to their antipsychotic efficacy.

Journal: Neuroscience applied

Status: data only

[40824] doi:10.1038/s41598-022-23033-y [paper, data]

Overnight dynamics in scale-free and oscillatory spectral parameters of NREM sleep EEG.

Journal: Scientific reports

Status: data only, 1 dataset cited

[40825] doi:10.1089/neu.2022.0044 [paper, repository]

Understanding Primary Blast Injury: High Frequency Pressure Acutely Disrupts Neuronal Network Dynamics in Cerebral Organoids.

Journal: Journal of neurotrauma

Authors' code: ZaneLybrand/MEA-analysis (no license)

Status: code verified, 4 files readable, 3 matches

[40826] doi:10.1093/brain/awac213 [paper, repository]

Multi-method investigation of factors influencing amyloid onset and impairment in three cohorts.

Journal: Brain : a journal of neurology

Authors' code: Betthauser-Neuro-Lab/SILA-AD-Biomarker (GPL-3.0)

Status: code verified, 11 files readable, 3 matches

[40827] doi:10.1093/brain/awac224 [paper, repository]

Interpretable surface-based detection of focal cortical dysplasias: a Multi-centre Epilepsy Lesion Detection study.

Journal: Brain : a journal of neurology

Authors' code: protocols.io/researchers/meld-project (no license), MELDProject/meld_classifier (MIT)

Status: code verified, 80 files readable, 17 matches

[40828] doi:10.1093/brain/awac226 [paper]

A demonstration of cone function plasticity after gene therapy in achromatopsia.

Journal: Brain : a journal of neurology

Status: code on request

[40829] doi:10.1093/brain/awac227 [paper, repository]

Neurofilament light-associated connectivity in young-adult Huntington's disease is related to neuronal genes.

Journal: Brain : a journal of neurology

Authors' code: kirstiejane/nspn_whitakervertes_pnas2016 (MIT), AngelikaZa/YAS_HD (MIT)

Status: code verified, 46 files readable, 5 matches

[40830] doi:10.1093/brain/awac296 [paper, repository]

Integrative genomics reveals pathogenic mediator of valproate-induced neurodevelopmental disability.

Journal: Brain : a journal of neurology

Authors' code: rahfel/VPA (no license)

Status: code verified, 5 files readable, 2 matches

[40831] doi:10.1093/cercor/bhab531 [paper, data]

Task-specific network interactions across key cognitive domains.

Journal: Cerebral cortex (New York, N.Y. : 1991)

Status: data only, 1 dataset cited

[40832] doi:10.1093/cercor/bhac005 [paper]

Increased brain volume from higher cereal and lower coffee intake: shared genetic determinants and impacts on cognition and metabolism.

Journal: Cerebral cortex (New York, N.Y. : 1991)

Status: code on request

[40833] doi:10.1093/database/baac103 [paper, repository]

LitCovid ensemble learning for COVID-19 multi-label classification.

Journal: Database : the journal of biological databases and curation

Authors' code: JHnlp/LCEL (no license)

Status: code verified, 18 files readable, 6 matches

[40834] doi:10.1093/g3journal/jkac163 [paper, data]

Enteric bacterial infection in Drosophila induces whole-body alterations in metabolic gene expression independently of the immune deficiency signaling pathway.

Journal: G3 (Bethesda, Md.)

Status: data only, 1 dataset cited

[40835] doi:10.1093/g3journal/jkac248 [paper, repository]

Genetic screens identified dual roles of microtubule-associated serine threonine kinase and CREB within a single thermosensory neuron in the regulation of Caenorhabditis elegans thermotaxis behavior.

Journal: G3 (Bethesda, Md.)

Authors' code: ShunjiNakano/AIY_tracking (no license)

Status: code verified, 3 files readable

[40836] doi:10.1093/gigascience/giac108 [paper, repository]

An in vitro whole-cell electrophysiology dataset of human cortical neurons.

Journal: GigaScience

Authors' code: derekhoward/nwb_conversion (MIT)

Status: code verified, 14 files readable, 11 matches

[40837] doi:10.1093/hmg/ddac146 [paper, data]

Protein misfolding and clearance in the pathogenesis of a new infantile onset ataxia caused by mutations in PRDX3.

Journal: Human molecular genetics

Status: data only, 1 dataset cited

[40838] doi:10.1093/nar/gkac659 [paper, repository]

TGS1 impacts snRNA 3'-end processing, ameliorates survival motor neuron-dependent neurological phenotypes in vivo and prevents neurodegeneration.

Journal: Nucleic acids research

Authors' code: cmroake/NAR_TGS1 (no license), roozbehdn/TGS1_SMN (no license)

Status: code verified, 14 files readable, 5 matches

[40839] doi:10.1093/nar/gkac992 [paper, data]

Chromatin accessibility-based characterisation of brain gene regulatory networks in three distinct honey bee polyphenisms.

Journal: Nucleic acids research

Status: data only, 1 dataset cited

[40840] doi:10.1093/ntr/ntac168 [paper]

Overnight Abstinence Is Associated With Smaller Secondary Somatosensory Cortical Volumes and Higher Somatosensory-Motor Cortical Functional Connectivity in Cigarette Smokers.

Journal: Nicotine & tobacco research : official journal of the Society for Research on Nicotine and Tobacco

Status: code on request

[40841] doi:10.1093/scan/nsac025 [paper, data]

Neural connectivity underlying adolescent social learning in sibling dyads.

Journal: Social cognitive and affective neuroscience

Status: data only, 1 dataset cited

[40842] doi:10.1093/scan/nsac028 [paper, repository]

Unsupervised classification reveals consistency and degeneracy in neural network patterns of emotion.

Journal: Social cognitive and affective neuroscience

Authors' code: GatesLab/gimme (no license)

Status: code verified, 52 files readable

[40843] doi:10.1093/scan/nsac032 [paper, data]

EEG frequency tagging evidence of social interaction recognition.

Journal: Social cognitive and affective neuroscience

Status: data only, 1 dataset cited

[40844] doi:10.1093/stcltm/szac073 [paper, repository]

TrkA+ Neurons Induce Pathologic Regeneration After Soft Tissue Trauma.

Journal: Stem cells translational medicine

Authors' code: smarini/Single-Cell-Downstream-analysis-Pagani-et-al.-2020 (no license)

Status: code verified, 2 files readable, 1 match

[40845] doi:10.1097/md.0000000000031418 [paper]

Hub gene target of glioblastoma: LOX, SERPINH1 and TGFBI.

Journal: Medicine

Status: data only

[40846] doi:10.1101/gad.349930.122 [paper, repository]

Oxytocin signaling is necessary for synaptic maturation of adult-born neurons.

Journal: Genes & development

Authors' code: satijalab/seurat (other), satijalab/seurat-wrappers (GPL-3.0), cole-trapnell-lab.github.io/monocle3 (no license), alexdobin/STAR (MIT)

Status: code verified, 508 files readable, 5 matches

[40847] doi:10.1111/cogs.13206 [paper, repository]

Behavioral Signatures of Memory Resources for Language: Looking beyond the Lexicon/Grammar Divide.

Journal: Cognitive science

Authors' code: ooominds/Memory_Resources_for_Language (GPL-3.0)

Status: code verified, 5 files readable, 2 matches

[40848] doi:10.1111/ejn.15839 [paper, repository]

Towards a machine-learning assisted diagnosis of psychiatric disorders and their operationalization in preclinical research: Evidence from studies on addiction-like behaviour in individual rats.

Journal: The European journal of neuroscience

Authors' code: supp:PMC10092243/EJN-56-6069-s013.py (no license), supp:PMC10092243/EJN-56-6069-s010.py (no license), supp:PMC10092243/EJN-56-6069-s004.py (no license), supp:PMC10092243/EJN-56-6069-s007.py (no license), supp:PMC10092243/EJN-56-6069-s009.py (no license), supp:PMC10092243/EJN-56-6069-s008.py (no license), supp:PMC10092243/EJN-56-6069-s011.py (no license), supp:PMC10092243/EJN-56-6069-s003.py (no license)

Status: code verified, 8 files readable, 4 matches

[40849] doi:10.1111/jcmm.17603 [paper, data]

Identification of cuproptosis-related lncRNAs for prognosis and immunotherapy in glioma.

Journal: Journal of cellular and molecular medicine

Status: data only, 6 datasets cited

[40850] doi:10.1167/iovs.63.12.5 [paper, repository]

Zfp503/Nlz2 Is Required for RPE Differentiation and Optic Fissure Closure.

Journal: Investigative ophthalmology & visual science

Authors' code: NIH-NEI/NGS_genotype_calling (no license), NIH-NEI/variant_prioritization (no license)

Status: code verified, 219 files readable

[40851] doi:10.1167/jov.22.12.13 [paper, data]

Grasping follows Weber's law: How to use response variability as a proxy for JND.

Journal: Journal of vision

Status: data only, 1 dataset cited

[40852] doi:10.1167/jov.22.12.9 [paper, repository]

Individual differences in looking at persons in scenes.

Journal: Journal of vision

Authors' code: OSF ynujz (no license)

Status: code verified, 2 files readable, 1 match

[40853] doi:10.1182/blood.2021015350 [paper, data]

Immunothrombosis and vascular heterogeneity in cerebral cavernous malformation.

Journal: Blood

Status: data only, 1 dataset cited

[40854] doi:10.1186/s12987-022-00376-2 [paper, repository]

Human intracranial pulsatility during the cardiac cycle: a computational modelling framework.

Journal: Fluids and barriers of the CNS

Authors' code: Zenodo 6553790 (CC-BY-4.0)

Status: code verified

[40855] doi:10.1186/s13148-022-01357-w [paper, data]

A correlation map of genome-wide DNA methylation patterns between paired human brain and buccal samples.

Journal: Clinical epigenetics

Status: data only, 1 dataset cited

[40856] doi:10.1210/endrev/bnac010 [paper, data]

Clinical Biology of the Pituitary Adenoma.

Journal: Endocrine reviews

Status: data only, 1 dataset cited

[40857] doi:10.1371/journal.pbio.3001838 [paper, repository]

The microbiota promotes social behavior by modulating microglial remodeling of forebrain neurons.

Journal: PLoS biology

Authors' code: stednitzs/daniopen (no license)

Status: code verified, 2 files readable

[40858] doi:10.1523/eneuro.0141-22.2022 [paper, repository]

Interictal Gamma Event Connectivity Differentiates the Seizure Network and Outcome in Patients after Temporal Lobe Epilepsy Surgery.

Journal: eNeuro

Authors' code: MohamadShamas/GEC (no license)

Status: code verified, 356 files readable, 2 matches

[40859] doi:10.1523/eneuro.0174-22.2022 [paper, data]

The Neural Correlates of Spatial Disorientation in Head Direction Cells.

Journal: eNeuro

Status: data only, 1 dataset cited

[40860] doi:10.1523/eneuro.0265-22.2022 [paper, repository]

Cortical Pyramidal and Parvalbumin Cells Exhibit Distinct Spatiotemporal Extracellular Electric Potentials.

Journal: eNeuro

Authors' code: EranStarkLab/SpatiotemporalSpiking (no license)

Status: code verified, 53 files readable, 8 matches

[40861] doi:10.1523/eneuro.0309-22.2022 [paper, repository]

The Generic Inhibitory Function of Corollary Discharge in Motor Intention: Evidence from the Modulation Effects of Speech Preparation on the Late Components of Auditory Neural Responses.

Journal: eNeuro

Authors' code: OSF au43q (no license)

Status: code verified, 5 files readable, 1 match

[40862] doi:10.1523/eneuro.0369-22.2022 [paper]

Differential Modes of Action of α1- and α1γ2-Autoantibodies Derived from Patients with GABA_AR Encephalitis.

Journal: eNeuro

Status: code on request

[40863] doi:10.1523/eneuro.0397-22.2022 [paper, repository]

Data-Driven Models of Efficient Chromatic Coding in the Outer Retina.

Journal: eNeuro

Authors' code: luframirezoc/Chromatic_coding (no license)

Status: code verified, 9 files readable, 1 match

[40864] doi:10.1523/eneuro.0419-22.2022 [paper, repository]

Tree Shrews as an Animal Model for Studying Perceptual Decision-Making Reveal a Critical Role of Stimulus-Independent Processes in Guiding Behavior.

Journal: eNeuro

Authors' code: compmem/smile (GPL-3.0)

Status: code verified, 94 files readable

[40865] doi:10.1590/0100-3984.2021.0148 [paper, data]

Posterior reversible encephalopathy syndrome in the pediatric population: a pictorial essay.

Journal: Radiologia brasileira

Status: data only, 2 datasets cited

[40866] doi:10.1590/0100-3984.2022.0016 [paper, data]

The role of neuroimaging in the determination of brain death.

Journal: Radiologia brasileira

Status: data only, 1 dataset cited

[40867] doi:10.1590/0100-3984.2022.0020 [paper, data]

Ultrasound reference values for peripheral nerve cross-sectional areas and indices in a sample of healthy individuals in Brazil.

Journal: Radiologia brasileira

Status: data only, 2 datasets cited

[40868] doi:10.3389/fncel.2022.1009321 [paper, repository]

Quantitative characterisation of ipRGCs in retinal degeneration using a computation platform for extracting and reconstructing single neurons in 3D from a multi-colour labeled population.

Journal: Frontiers in cellular neuroscience

Authors' code: lucasgroup/BRIAN (Apache-2.0)

Status: code verified, 13 files readable, 2 matches

[40869] doi:10.3389/fnhum.2022.1014703 [paper, data]

Visual P2p component responds to perceived numerosity.

Journal: Frontiers in human neuroscience

Status: data only, 1 dataset cited

[40870] doi:10.3389/fnhum.2022.925283 [paper, repository]

Programming of subthalamic nucleus deep brain stimulation for Parkinson's disease with sweet spot-guided parameter suggestions.

Journal: Frontiers in human neuroscience

Authors' code: gitlab.switch.ch/brain-stimulation-mapping/automatic_dbs_stim_params_selection (AGPL-3.0)

Status: code verified, 30 files readable, 4 matches

[40871] doi:10.3389/fphar.2022.1061597 [paper, data]

Prognosis prediction and tumor immune microenvironment characterization based on tryptophan metabolism-related genes signature in brain glioma.

Journal: Frontiers in pharmacology

Status: data only, 1 dataset cited

[40872] doi:10.34133/2022/9807590 [paper, repository]

Simulated MRI Artifacts: Testing Machine Learning Failure Modes.

Journal: BME frontiers

Authors' code: Systems-Imaging-Bioinformatics-Lab/mri-artifacts (no license)

Status: code verified, 1 file readable

[40873] doi:10.4103/1673-5374.339004 [paper, data]

Genetic dissection of glutathione S-transferase omega-1: identification of novel downstream targets and Alzheimer's disease pathways.

Journal: Neural regeneration research

Status: data only, 1 dataset cited

[40874] doi:10.7554/elife.79027 [paper, repository]

Rapid encoding of task regularities in the human hippocampus guides sensorimotor timing.

Journal: eLife

Authors' code: OSF cs8d6 (no license)

Status: code verified, 1 file readable, 3 matches

[40875] doi:10.7554/elife.81868 [paper, repository]

Molecular and anatomical characterization of parabrachial neurons and their axonal projections.

Journal: eLife

Authors' code: stuberlab/Pauli-Chen-Basiri-et-al-2022 (no license)

Status: code verified, 1 file readable, 7 matches

Monday, 31 October 2022 (24 papers)

[40876] doi:10.1016/j.cub.2022.10.015 [paper]

Cell types and molecular architecture of the Octopus bimaculoides visual system.

Journal: Current biology : CB

Status: code on request

[40877] doi:10.1016/j.dcn.2022.101170 [paper, data]

Affective flexibility as a developmental building block of cognitive reappraisal: An fMRI study.

Journal: Developmental cognitive neuroscience

Status: data only, 1 dataset cited

[40878] doi:10.1016/j.dcn.2022.101171 [paper, repository]

Longitudinal developmental trajectories of inhibition and white-matter maturation of the fronto-basal-ganglia circuits.

Journal: Developmental cognitive neuroscience

Authors' code: MervSingh/Longitudinal_FBA_SST (GPL-3.0), lifecourse.melbournechildrens.com/cohorts/cap-nicap (no license)

Status: code verified, 47 files readable, 9 matches

[40879] doi:10.1016/j.dcn.2022.101172 [paper, repository]

Reward sensitivity and internalizing symptoms during the transition to puberty: An examination of 9-and 10-year-olds in the ABCD Study.

Journal: Developmental cognitive neuroscience

Authors' code: OSF 3yrwh (no license), nsaragosaharris/abcd_transitiontopuberty_study (no license)

Status: code verified, 19 files readable, 10 matches

[40880] doi:10.1016/j.isci.2022.105466 [paper, repository]

Prior associations affect bumblebees' generalization performance in a tool-selection task.

Journal: iScience

Authors' code: doi:10.5061/dryad.tqjq2bw36 (no license), Zenodo 7333351 (MIT), Zenodo 7333352 (MIT)

Status: code verified, 2 files readable

[40881] doi:10.1016/j.patter.2022.100615 [paper, repository]

A method to establish functional vagus nerve topography from electro-neurographic spontaneous activity.

Journal: Patterns (New York, N.Y.)

Authors' code: s-romeni/vagus_nerve_discriminative_beamforming (no license)

Status: code verified, 25 files readable, 6 matches

[40882] doi:10.1038/s41467-022-34075-1 [paper, data]

Multidimensional memory topography in the medial parietal cortex identified from neuroimaging of thousands of daily memory videos.

Journal: Nature communications

Status: data only, 1 dataset cited

[40883] doi:10.1038/s41467-022-34159-y [paper, data]

Formation of supramolecular channels by reversible unwinding-rewinding of bis(indole) double helix via ion coordination.

Journal: Nature communications

Status: data only, 1 dataset cited

[40884] doi:10.1038/s41598-022-21907-9 [paper, repository]

Non-invasive brain stimulation modulates GABAergic activity in neurofibromatosis 1.

Journal: Scientific reports

Authors' code: biu.bangor.ac.uk/projects.php.en (no license)

Status: code verified

[40885] doi:10.1089/neur.2022.0029 [paper, data]

Blood-Based Biomarkers of Repetitive, Subconcussive Blast Overpressure Exposure in the Training Environment: A Pilot Study.

Journal: Neurotrauma reports

Status: data only, 1 dataset cited

[40886] doi:10.1128/mbio.02308-22 [paper, repository]

Neuropilin-1 Mediates SARS-CoV-2 Infection of Astrocytes in Brain Organoids, Inducing Inflammation Leading to Dysfunction and Death of Neurons.

Journal: mBio

Authors' code: Zenodo 5908198 (other-open), royerlab/aydin (BSD-3-Clause)

Status: code verified, 1,155 files readable

[40887] doi:10.1186/s40478-022-01457-x [paper, data]

Artificial intelligence-derived neurofibrillary tangle burden is associated with antemortem cognitive impairment.

Journal: Acta neuropathologica communications

Status: data only, 2 datasets cited

[40888] doi:10.1371/journal.pcbi.1010320 [paper, repository]

Navigation task and action space drive the emergence of egocentric and allocentric spatial representations.

Journal: PLoS computational biology

Authors' code: sencheng/Emergent-Spatial-Representations-in-RL (no license)

Status: code verified, 42 files readable, 3 matches

[40889] doi:10.1371/journal.pcbi.1010658 [paper, repository]

Mutual influence between language and perception in multi-agent communication games.

Journal: PLoS computational biology

Authors' code: OSF qu4xp (no license)

Status: code verified, 2 files readable

[40890] doi:10.15252/embj.2022111192 [paper, data]

Maternal immune activation leads to defective brain-blood vessels and intracerebral hemorrhages in male offspring.

Journal: The EMBO journal

Status: data only, 1 dataset cited

[40891] doi:10.3389/fneur.2022.923988 [paper, repository]

Site effects how-to and when: An overview of retrospective techniques to accommodate site effects in multi-site neuroimaging analyses.

Journal: Frontiers in neurology

Authors' code: Jfortin1/ComBatHarmonization (no license), andy1764/Distributed-ComBat (no license), andy1764/CovBat_Harmonization (no license)

Status: code verified, 39 files readable, 4 matches

[40892] doi:10.3389/fninf.2022.883700 [paper, repository]

Brian2CUDA: Flexible and Efficient Simulation of Spiking Neural Network Models on GPUs.

Journal: Frontiers in neuroinformatics

Authors' code: Zenodo 6406656 (GPL-2.0), Zenodo 1464116 (GPL-2.0), Zenodo 4601961 (cecill-2.1), brian-team/brian2genn (GPL-2.0)

Status: code verified, 399 files readable, 24 matches

[40893] doi:10.3389/fphar.2022.966218 [paper, data]

Anxiolytic effect of YangshenDingzhi granules: Integrated network pharmacology and hippocampal metabolomics.

Journal: Frontiers in pharmacology

Status: data only, 1 dataset cited

[40894] doi:10.3390/brainsci12111480 [paper, data]

Electrophysiological Evidence for A Number-Action Mapping in Infancy.

Journal: Brain sciences

Status: data only, 1 dataset cited

[40895] doi:10.3390/ijms232113232 [paper, data]

A Plasma Circular RNA Profile Differentiates Subjects with Alzheimer's Disease and Mild Cognitive Impairment from Healthy Controls.

Journal: International journal of molecular sciences

Status: data only, 1 dataset cited

[40896] doi:10.3390/ijms232113278 [paper]

Siponimod Modulates the Reaction of Microglial Cells to Pro-Inflammatory Stimulation.

Journal: International journal of molecular sciences

Status: data only

[40897] doi:10.7554/elife.79772 [paper, repository]

Contrast polarity-specific mapping improves efficiency of neuronal computation for collision detection.

Journal: eLife

Authors' code: doi:10.5061/dryad.prr4xgxqp (no license)

Status: dead link

[40898] doi:10.7554/elife.81476 [paper, data]

Precise and stable edge orientation signaling by human first-order tactile neurons.

Journal: eLife

Status: data only, 1 dataset cited

[40899] doi:10.7554/elife.81943 [paper, data]

Constitutively active STING causes neuroinflammation and degeneration of dopaminergic neurons in mice.

Journal: eLife

Status: data only, 2 datasets cited

Sunday, 30 October 2022 (4 papers)

[40900] doi:10.1038/s41467-022-34091-1 [paper, data]

Inducing forgetting of unwanted memories through subliminal reactivation.

Journal: Nature communications

Status: data only, 1 dataset cited

[40901] doi:10.1038/s41467-022-34271-z [paper, repository]

De novo analysis of bulk RNA-seq data at spatially resolved single-cell resolution.

Journal: Nature communications

Authors' code: ZJUFanLab/bulk2space (GPL-3.0), dmcable/spacexr (GPL-3.0), almaan/stereoscope (MIT), MarcElosua/SPOTlight (GPL-3.0), Zenodo 7134575 (other-open)

Status: code verified, 194 files readable, 7 matches

[40902] doi:10.1038/s42003-022-04148-4 [paper, repository]

Cortical gradient of a human functional similarity network captured by the geometry of cytoarchitectonic organization.

Journal: Communications biology

Authors' code: YaoMeng94/FSN-Gradient (no license)

Status: code verified, 4 files readable, 1 match

[40903] doi:10.34172/bi.2022.24113 [paper, data]

Graph theoretical network analysis, <i>in silico</i> exploration, and validation of bioactive compounds from <i>Cynodon dactylon</i> as potential neuroprotective agents against α-synuclein.

Journal: BioImpacts : BI

Status: data only, 1 dataset cited

Saturday, 29 October 2022 (16 papers)

[40904] doi:10.1002/hbm.26128 [paper, repository]

Measuring brain beats: Cardiac-aligned fast functional magnetic resonance imaging signals.

Journal: Human brain mapping

Authors' code: vistalab/BrainBeat (MIT)

Status: code verified, 94 files readable, 8 matches

[40905] doi:10.1007/s00415-022-11433-z [paper, data]

Motor, cognitive and behavioural profiles of C9orf72 expansion-related amyotrophic lateral sclerosis.

Journal: Journal of neurology

Status: data only, 1 dataset cited

[40906] doi:10.1016/j.bbih.2022.100546 [paper, data]

Miltefosine as a PPM1A activator improves AD-like pathology in mice by alleviating tauopathy via microglia/neurons crosstalk.

Journal: Brain, behavior, & immunity - health

Status: data only, 1 dataset cited

[40907] doi:10.1016/j.crneur.2022.100061 [paper, repository]

Methodological considerations when measuring and analyzing auditory steady-state responses with multi-channel EEG.

Journal: Current research in neurobiology

Authors' code: HaoLu-a/MultiPhase_Code (no license)

Status: code verified, 64 files readable, 2 matches

[40908] doi:10.1016/j.ijpddr.2022.10.004 [paper, repository]

Benzimidazoles cause lethality by inhibiting the function of Caenorhabditis elegans neuronal beta-tubulin.

Journal: International journal for parasitology. Drugs and drug resistance

Authors' code: AndersenLab/2022_ben1sensitivity_SBG (no license)

Status: code verified, 3 files readable

[40909] doi:10.1016/j.isci.2022.105457 [paper, repository]

Theta dominates cross-frequency coupling in hippocampal-medial entorhinal circuit during awake-behavior in rats.

Journal: iScience

Authors' code: doi:10.5061/dryad.jdfn2z3dj (no license), Zenodo 7013761 (MIT)

Status: code verified, 6 files readable, 2 matches

[40910] doi:10.1038/s41467-022-34134-7 [paper, repository]

Natural scene sampling reveals reliable coarse-scale orientation tuning in human V1.

Journal: Nature communications

Authors' code: elimerriam/nsdOtopy (MIT)

Status: code verified, 14 files readable, 6 matches

[40911] doi:10.1038/s41467-022-34175-y [paper, repository]

Neuronal CaMKK2 promotes immunosuppression and checkpoint blockade resistance in glioblastoma.

Journal: Nature communications

Authors' code: wht10/CT2A_scRNAseq_CaMKK2KOvWT (MIT)

Status: code verified, 6 files readable, 6 matches

[40912] doi:10.1038/s41531-022-00396-7 [paper, repository]

Multiple input algorithm-guided Deep Brain stimulation-programming for Parkinson's disease patients.

Journal: NPJ Parkinson's disease

Authors' code: bostonscientific.com/en-us/data-sharing-requests.html (no license)

Status: code verified

[40913] doi:10.1038/s41537-022-00299-9 [paper, repository]

Impaired dynamic functional brain properties and their relationship to symptoms in never treated first-episode patients with schizophrenia.

Journal: Schizophrenia (Heidelberg, Germany)

Authors' code: youwanfang/Dynamic-Properties (no license)

Status: code verified, 3 files readable

[40914] doi:10.1186/s13041-022-00971-2 [paper, data]

Olfactory marker protein is unlikely to be cleaved by calpain 5.

Journal: Molecular brain

Status: data only, 1 dataset cited

[40915] doi:10.1186/s40478-022-01455-z [paper, repository]

Synaptic proteomics reveal distinct molecular signatures of cognitive change and C9ORF72 repeat expansion in the human ALS cortex.

Journal: Acta neuropathologica communications

Authors' code: arraytomographyusers/Array_tomography_analysis_tool (no license), lewiswilkins/Array-Tomography-Tool (GPL-3.0)

Status: code verified, 52 files readable, 1 match

[40916] doi:10.3390/brainsci12111468 [paper]

Visualization of the Dynamic Brain Activation Pattern during a Decision-Making Task.

Journal: Brain sciences

Status: code on request

[40917] doi:10.3390/cancers14215335 [paper, repository]

Intraoperative Evaluation of Brain-Tumor Microvascularization through MicroV IOUS: A Protocol for Image Acquisition and Analysis of Radiomic Features.

Journal: Cancers

Authors' code: Zenodo 6849562 (CC-BY-4.0), chalkie666/imagejmacros (no license)

Status: code verified, 14 files readable

[40918] doi:10.3390/e24111556 [paper, data]

Resting-State EEG in Alpha Rhythm May Be Indicative of the Performance of Motor Imagery-Based Brain-Computer Interface.

Journal: Entropy (Basel, Switzerland)

Status: data only, 1 dataset cited

[40919] doi:10.3390/ijms232113190 [paper, repository]

GDNF Increases Inhibitory Synaptic Drive on Principal Neurons in the Hippocampus via Activation of the Ret Pathway.

Journal: International journal of molecular sciences

Authors' code: AMikroulis/xPSC-detection (AGPL-3.0), AMikroulis/staining-analysis (GPL-3.0)

Status: code verified, 6 files readable, 2 matches

Friday, 28 October 2022 (22 papers)

[40920] doi:10.1007/s11063-022-11060-9 [paper, data]

COVID-19 Detection from Chest X-rays Using Trained Output Based Transfer Learning Approach.

Journal: Neural processing letters

Status: data only, 4 datasets cited

[40921] doi:10.1038/s41467-022-34178-9 [paper]

The gate injection-based field-effect synapse transistor with linear conductance update for online training.

Journal: Nature communications

Status: code on request

[40922] doi:10.1038/s41531-022-00412-w [paper, repository]

Genetically-informed prediction of short-term Parkinson's disease progression.

Journal: NPJ Parkinson's disease

Authors' code: drhosseinjavedani/Genetically-Informed-Prediction-of-Short-Term-Parkinson-Progression (no license)

Status: code verified, 21 files readable, 10 matches

[40923] doi:10.1073/pnas.2210783119 [paper, repository]

Activity in a prefrontal-periaqueductal gray circuit overcomes behavioral and endocrine features of the passive coping stress response.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: djamesbarker/pMAT (GPL-3.0), philjrdb/ERTsimulation (no license)

Status: code verified, 47 files readable, 2 matches

[40924] doi:10.1080/20008066.2022.2135195 [paper, data]

Social threat and safety learning in individuals with adverse childhood experiences: electrocortical evidence on face processing, recognition, and working memory.

Journal: European journal of psychotraumatology

Status: data only, 1 dataset cited

[40925] doi:10.1126/sciadv.abk1239 [paper, data]

Intermediate cells of in vitro cellular reprogramming and in vivo tissue regeneration require desmoplakin.

Journal: Science advances

Status: data only, 1 dataset cited

[40926] doi:10.1126/sciadv.abn3852 [paper, data]

An internal expectation guides <i>Drosophila</i> egg-laying decisions.

Journal: Science advances

Status: data only, 1 dataset cited

[40927] doi:10.1155/2022/4419221 [paper]

Evaluation of Intraperitoneal [&lt;sup&gt;18&lt;/sup&gt;F]-FDOPA Administration for Micro-PET Imaging in Mice and Assessment of the Effect of Subchronic Ketamine Dosing on Dopamine Synthesis Capacity.

Journal: Molecular imaging

Status: code on request

[40928] doi:10.1186/s13293-022-00466-8 [paper, data]

Why the estrous cycle matters for neuroscience.

Journal: Biology of sex differences

Status: data only, 1 dataset cited

[40929] doi:10.1186/s40478-022-01456-y [paper, data]

Dual-probe fluorescence spectroscopy for sensitive quantitation of Alzheimer's amyloid pathology.

Journal: Acta neuropathologica communications

Status: data only, 1 dataset cited

[40930] doi:10.1371/journal.pcbi.1010507 [paper, repository]

Reaction-diffusion models in weighted and directed connectomes.

Journal: PLoS computational biology

Authors' code: figshare 21081418 (CC-BY-4.0)

Status: code verified, 8 files readable, 1 match

[40931] doi:10.15252/embj.2022110595 [paper, data]

BCL7A-containing SWI/SNF/BAF complexes modulate mitochondrial bioenergetics during neural progenitor differentiation.

Journal: The EMBO journal

Status: data only, 1 dataset cited

[40932] doi:10.3389/fnins.2022.1017953 [paper, data]

Placental transcriptional signatures associated with cerebral white matter damage in the neonate.

Journal: Frontiers in neuroscience

Status: data only, 1 dataset cited

[40933] doi:10.3389/fnins.2022.1055451 [paper, repository]

Local extreme map guided multi-modal brain image fusion.

Journal: Frontiers in neuroscience

Authors' code: uzeful/LEGFF (no license)

Status: code verified, 3 files readable, 1 match

[40934] doi:10.3389/fphar.2022.991072 [paper, data]

Differentiation and on axon-guidance chip culture of human pluripotent stem cell-derived peripheral cholinergic neurons for airway neurobiology studies.

Journal: Frontiers in pharmacology

Status: data only, 1 dataset cited

[40935] doi:10.3389/frai.2022.949707 [paper, repository]

Error driven synapse augmented neurogenesis.

Journal: Frontiers in artificial intelligence

Authors' code: adamgoodtime/neurogenesis (no license)

Status: code verified, 23 files readable, 1 match

[40936] doi:10.3390/biomedicines10112746 [paper, data]

Modified SqueezeNet Architecture for Parkinson's Disease Detection Based on Keypress Data.

Journal: Biomedicines

Status: data only, 1 dataset cited

[40937] doi:10.3390/brainsci12111460 [paper, data]

Volumetric Variability of the Ventromedial Prefrontal Cortex Reflects the Propensity for Engaging in High-Stakes Gambling Behavior.

Journal: Brain sciences

Status: data only, 1 dataset cited

[40938] doi:10.3390/cells11213415 [paper, repository]

Nogo-A Regulates the Fate of Human Dental Pulp Stem Cells toward Osteogenic, Adipogenic, and Neurogenic Differentiation.

Journal: Cells

Authors' code: TheMoorLab/Tooth (no license)

Status: code verified, 20 files readable

[40939] doi:10.3390/ijms232113080 [paper, data]

Depleted Calcium Stores and Increased Calcium Entry in Rod Photoreceptors of the <i>Cacna2d4</i> Mouse Model of Cone-Rod Dystrophy RCD4.

Journal: International journal of molecular sciences

Status: data only, 1 dataset cited

[40940] doi:10.3758/s13428-022-02004-1 [paper, data]

The Italian Sensorimotor Norms: Perception and action strength measures for 959 words.

Journal: Behavior research methods

Status: data only, 1 dataset cited

[40941] doi:10.7554/elife.70015 [paper, repository]

High-throughput automated methods for classical and operant conditioning of <i>Drosophila</i> larvae.

Journal: eLife

Authors' code: ZlaticLab/multi-larva-tracker-scripts-public (other)

Status: code verified, 13 files readable, 13 matches

Thursday, 27 October 2022 (31 papers)

[40942] doi:10.1002/advs.202202944 [paper, data]

Cerebral Malaria and Neuronal Implications of Plasmodium Falciparum Infection: From Mechanisms to Advanced Models.

Journal: Advanced science (Weinheim, Baden-Wurttemberg, Germany)

Status: data only, 1 dataset cited

[40943] doi:10.1007/s10489-022-04254-0 [paper, repository]

Interpretable tourism demand forecasting with temporal fusion transformers amid COVID-19.

Journal: Applied intelligence (Dordrecht, Netherlands)

Authors' code: wubinrong-hub/CNN-and-ADE-TFT-model (no license)

Status: code verified, 6 files readable, 8 matches

[40944] doi:10.1016/j.heliyon.2022.e11194 [paper, data]

A one month high fat diet disrupts the gut microbiome and integrity of the colon inducing adiposity and behavioral despair in male Sprague Dawley rats.

Journal: Heliyon

Status: data only, 1 dataset cited

[40945] doi:10.1016/j.isci.2022.105413 [paper, data]

Face-to-face spatial orientation fine-tunes the brain for neurocognitive processing in conversation.

Journal: iScience

Status: code on request, 1 dataset cited

[40946] doi:10.1016/j.isci.2022.105440 [paper]

Lateral habenula neurons signal step-by-step changes of reward prediction.

Journal: iScience

Status: code on request

[40947] doi:10.1016/j.patter.2022.100613 [paper, repository]

A transformer-based deep-learning approach for classifying brain metastases into primary organ sites using clinical whole-brain MRI images.

Journal: Patterns (New York, N.Y.)

Authors' code: QingLyu0828/whole-brain-MRI_metastases_cls (no license)

Status: code verified, 15 files readable, 7 matches

[40948] doi:10.1038/s41380-022-01837-8 [paper, data]

Single cell transcriptomics reveals distinct transcriptional responses to oxycodone and buprenorphine by iPSC-derived brain organoids from patients with opioid use disorder.

Journal: Molecular psychiatry

Status: data only, 1 dataset cited

[40949] doi:10.1038/s41467-022-33828-2 [paper, repository]

Aversive memory formation in humans involves an amygdala-hippocampus phase code.

Journal: Nature communications

Authors' code: TheStrangeLab/CostaLozanoetal (no license)

Status: code verified, 399 files readable, 22 matches

[40950] doi:10.1038/s41467-022-33883-9 [paper, repository]

Distinct organization of two cortico-cortical feedback pathways.

Journal: Nature communications

Authors' code: alleninstitute/allensdk (BSD-2-Clause), shenshan/feedback_paper_codeshare (MIT), shenshan/visual_stimuli (MIT), datajoint/datajoint-python (Apache-2.0), datajoint/datajoint-matlab (MIT), Zenodo 7106045 (other-open), Zenodo 7106033 (other-open)

Status: code verified, 1,277 files readable, 6 matches

[40951] doi:10.1038/s41593-022-01186-3 [paper, repository]

Mapping neurotransmitter systems to the structural and functional organization of the human neocortex.

Journal: Nature neuroscience

Authors' code: netneurolab/hansen_receptors (CC-BY-NC-SA-4.0), netneurolab/neuromaps (CC-BY-NC-SA-4.0), LTS5/cmp (BSD-3-Clause), netneurolab/netneurotools (BSD-3-Clause)

Status: code verified, 219 files readable, 19 matches

[40952] doi:10.1038/s41598-022-21346-6 [paper, repository]

Effects of different virtual reality technology driven dual-tasking paradigms on posture and saccadic eye movements in healthy older adults.

Journal: Scientific reports

Authors' code: MotorControlLearning/SaccadeVR-mobile (GPL-3.0)

Status: empty repository, 2 files readable

[40953] doi:10.1038/s41598-022-21768-2 [paper, data]

Ramp-shaped neural tuning supports graded population-level representation of the object-to-scene continuum.

Journal: Scientific reports

Status: data only, 1 dataset cited

[40954] doi:10.1038/s41598-022-22252-7 [paper]

An in silico comparative transcriptome analysis identifying hub lncRNAs and mRNAs in brain metastatic small cell lung cancer (SCLC).

Journal: Scientific reports

Status: code on request

[40955] doi:10.1073/pnas.2211147119 [paper, data]

Dissociable rhythmic mechanisms enhance memory for conscious and nonconscious perceptual contents.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 1 dataset cited

[40956] doi:10.1097/j.pain.0000000000002798 [paper, repository]

Clinical thresholds in pain-related facial activity linked to differences in cortical network activation in neonates.

Journal: Pain

Authors' code: figshare 20331591 (CC-BY-4.0), figshare 20749837 (CC-BY-4.0)

Status: empty repository

[40957] doi:10.1186/s12967-022-03576-4 [paper, data]

Early remission in multiple sclerosis is linked to altered coherence of the Cerebellar Network.

Journal: Journal of translational medicine

Status: data only, 1 dataset cited

[40958] doi:10.1186/s13244-022-01311-7 [paper, repository]

Reproducibility of artificial intelligence models in computed tomography of the head: a quantitative analysis.

Journal: Insights into imaging

Authors' code: FelixGunzer/Review_AI_CT_head (GPL-3.0)

Status: empty repository, 2 files readable

[40959] doi:10.1186/s13634-022-00939-3 [paper, repository]

Feature stability and setup minimization for EEG-EMG-enabled monitoring systems.

Journal: EURASIP journal on advances in signal processing

Authors' code: CisottoGiulia/EEG-EMG-analytics (GPL-3.0), signetlabdei.github.io/fesc (no license)

Status: code verified, 8 files readable

[40960] doi:10.1212/wnl.0000000000201488 [paper, data]

Involvement of Thalamocortical Networks in Patients With Poststroke Thalamic Aphasia.

Journal: Neurology

Status: data only, 1 dataset cited

[40961] doi:10.1371/journal.pdig.0000134 [paper, data]

Repeated automatic sleep scoring based on ear-EEG is a valuable alternative to manually scored polysomnography.

Journal: PLOS digital health

Status: data only, 2 datasets cited

[40962] doi:10.1371/journal.pgen.1010433 [paper, data]

A circular RNA Edis-Relish-castor axis regulates neuronal development in Drosophila.

Journal: PLoS genetics

Status: data only, 1 dataset cited

[40963] doi:10.1523/jneurosci.0619-22.2022 [paper, data]

Environment Symmetry Drives a Multidirectional Code in Rat Retrosplenial Cortex.

Journal: The Journal of neuroscience : the official journal of the Society for Neuroscience

Status: data only, 1 dataset cited

[40964] doi:10.3389/fcimb.2022.1026627 [paper, data]

Comprehensive evaluation of the mechanism of <i>Gastrodia elata</i> Blume in ameliorating cerebral ischemia-reperfusion injury based on integrating fecal metabonomics and 16S rDNA sequencing.

Journal: Frontiers in cellular and infection microbiology

Status: data only, 1 dataset cited

[40965] doi:10.3389/fninf.2022.953930 [paper, data]

Robust quasi-uniform surface meshing of neuronal morphology using line skeleton-based progressive convolution approximation.

Journal: Frontiers in neuroinformatics

Status: data only, 1 dataset cited

[40966] doi:10.3389/fnins.2022.898487 [paper, data]

Weak associations between personality and contraceptive choice.

Journal: Frontiers in neuroscience

Status: data only, 1 dataset cited

[40967] doi:10.3389/fnins.2022.996368 [paper, data]

Inflammation-related genes and immune infiltration landscape identified in kainite-induced temporal lobe epilepsy based on integrated bioinformatics analysis.

Journal: Frontiers in neuroscience

Status: data only, 5 datasets cited

[40968] doi:10.3390/ijms232112990 [paper, data]

Microglia and Alzheimer's Disease.

Journal: International journal of molecular sciences

Status: data only, 1 dataset cited

[40969] doi:10.3390/ijms232113044 [paper, data]

High Glycemia and Soluble Epoxide Hydrolase in Females: Differential Multiomics in Murine Brain Microvasculature.

Journal: International journal of molecular sciences

Status: data only, 1 dataset cited

[40970] doi:10.3390/s22218250 [paper]

Multi-Kernel Temporal and Spatial Convolution for EEG-Based Emotion Classification.

Journal: Sensors (Basel, Switzerland)

Status: code on request

[40971] doi:10.7554/elife.77645 [paper, data]

Excitatory and inhibitory D-serine binding to the NMDA receptor.

Journal: eLife

Status: data only, 1 dataset cited

[40972] doi:10.7554/elife.82587 [paper, repository]

Visual and motor signatures of locomotion dynamically shape a population code for feature detection in &lt;i&gt;Drosophila&lt;/i&gt;.

Journal: eLife

Authors' code: mhturner/glom_pop (MIT), ClandininLab/flystim (MIT), ClandininLab/visprotocol (MIT), ClandininLab/visanalysis (MIT)

Status: code verified, 155 files readable, 22 matches

Wednesday, 26 October 2022 (30 papers, 20 on this page)

[40973] doi:10.1002/hbm.26114 [paper, repository]

Observing cognitive processes in time through functional MRI model comparison.

Journal: Human brain mapping

Authors' code: OSF 6afq5 (no license), OSF rkbtf (no license)

Status: code verified, 480 files readable, 13 matches

[40974] doi:10.1002/mrm.29496 [paper, repository]

Building a tissue-unbiased brain template of fiber orientation distribution and tractography with multimodal registration.

Journal: Magnetic resonance in medicine

Authors' code: Jinglei-Lv/Tissue_Unbiased_FOD_Tractogram_Template (CC0-1.0)

Status: code verified, 8 files readable, 1 match

[40975] doi:10.1016/j.neuroimage.2022.119712 [paper, repository]

Spatially-enhanced clusterwise inference for testing and localizing intermodal correspondence.

Journal: NeuroImage

Authors' code: junjypark/CLEAN (MIT)

Status: code verified, 23 files readable

[40976] doi:10.1016/j.nicl.2022.103239 [paper, data]

Associations between abdominal adipose tissue, reproductive span, and brain characteristics in post-menopausal women.

Journal: NeuroImage. Clinical

Status: data only, 1 dataset cited

[40977] doi:10.1038/s41467-022-33947-w [paper, repository]

ΔFosB accumulation in hippocampal granule cells drives cFos pattern separation during spatial learning.

Journal: Nature communications

Authors' code: toertner/Kernel-density-estimate (no license)

Status: code verified, 3 files readable

[40978] doi:10.1038/s41467-022-34057-3 [paper, repository]

V1-bypassing suppression leads to direction-specific microsaccade modulation in visual coding and perception.

Journal: Nature communications

Authors' code: yujie1447/NC_Microsaccade (no license)

Status: code verified, 5 files readable, 2 matches

[40979] doi:10.1038/s41467-022-34200-0 [paper, data]

Rescue of deficits by Brwd1 copy number restoration in the Ts65Dn mouse model of Down syndrome.

Journal: Nature communications

Status: data only, 1 dataset cited

[40980] doi:10.1038/s41537-022-00293-1 [paper, repository]

In Vivo 7-Tesla MRI Investigation of Brain Iron and Its Metabolic Correlates in Chronic Schizophrenia.

Journal: Schizophrenia (Heidelberg, Germany)

Authors' code: CoBrALab/MAGeTbrain (other)

Status: code verified, 7 files readable, 1 match

[40981] doi:10.1038/s41598-022-22394-8 [paper, data]

Direct current stimulation modulates gene expression in isolated astrocytes with implications for glia-mediated plasticity.

Journal: Scientific reports

Status: data only, 1 dataset cited

[40982] doi:10.1038/s41598-022-22653-8 [paper, data]

Brain-computer interface to predict impulse buying behavior using functional near-infrared spectroscopy.

Journal: Scientific reports

Status: data only, 1 dataset cited

[40983] doi:10.1098/rspb.2022.1189 [paper, data]

Humans trade off whole-body energy cost to avoid overburdening muscles while walking.

Journal: Proceedings. Biological sciences

Status: data only, 1 dataset cited

[40984] doi:10.1126/sciadv.abq2789 [paper, data]

Elephant facial motor control.

Journal: Science advances

Status: data only, 1 dataset cited

[40985] doi:10.1177/09567976221120001 [paper, data]

Temporal Construal Effects Are Independent of Episodic Future Thought.

Journal: Psychological science

Status: data only, 1 dataset cited

[40986] doi:10.1212/nxg.0000000000200026 [paper, data]

Relationships of &lt;i&gt;APOE&lt;/i&gt; Genotypes With Small RNA and Protein Cargo of Brain Tissue Extracellular Vesicles From Patients With Late-Stage AD.

Journal: Neurology. Genetics

Status: data only, 2 datasets cited

[40987] doi:10.1371/journal.pone.0271425 [paper, repository]

A multimodal neuroimaging study of brain abnormalities and clinical correlates in post treatment Lyme disease.

Journal: PloS one

Authors' code: OSF kshq7 (no license)

Status: code found, still to be checked

[40988] doi:10.1371/journal.pone.0275664 [paper, data]

The contribution of white matter pathology, hypoperfusion, lesion load, and stroke recurrence to language deficits following acute subcortical left hemisphere stroke.

Journal: PloS one

Status: data only, 1 dataset cited

[40989] doi:10.1371/journal.pone.0275819 [paper, repository]

Modulations of local synchrony over time lead to resting-state functional connectivity in a parsimonious large-scale brain model.

Journal: PloS one

Authors' code: gin.g-node.org/opm/netofnetlsbm (no license)

Status: dead link

[40990] doi:10.1523/jneurosci.0123-22.2022 [paper, repository]

Weakly Correlated Local Cortical State Switches under Anesthesia Lead to Strongly Correlated Global States.

Journal: The Journal of neuroscience : the official journal of the Society for Neuroscience

Authors' code: ProektLab/spec-state-trans (no license)

Status: code verified, 122 files readable, 13 matches

[40991] doi:10.3389/fmed.2022.1000324 [paper, data]

Single-cell RNA-seq reveals the communications between extracellular matrix-related components and Schwann cells contributing to the earlobe keloid formation.

Journal: Frontiers in medicine

Status: data only, 1 dataset cited

[40992] doi:10.3389/fninf.2022.883742 [paper, repository]

STEPS 4.0: Fast and memory-efficient molecular simulations of neurons at the nanoscale.

Journal: Frontiers in neuroinformatics

Authors' code: microsoft/GSL (MIT), CNS-OIST/STEPS_Validation (no license)

Status: code verified, 107 files readable, 3 matches

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