Every paper, by date: page 182

44,644 papers with a page: 24,189 with their authors' code, 4,955 with code on request, 15,495 with data only. The most recent first, 224 a page. Page 182 of 200: 11 November 2022 to 3 November 2022.

Friday, 11 November 2022 (24 papers, 18 on this page)

[40545] doi:10.1016/j.xpro.2022.101841 [paper]

Algebraic approach for subspace decomposition and clustering of neural activity.

Journal: STAR protocols

Status: code on request

[40546] doi:10.1038/s41467-022-34131-w [paper, repository]

Developmental disruption and restoration of brain synaptome architecture in the murine Pax6 neurodevelopmental disease model.

Journal: Nature communications

Authors' code: rickqiu1981/Mouse-synaptome-Pax6-disease (MIT)

Status: code verified, 3 files readable

[40547] doi:10.1038/s41467-022-34354-x [paper, data]

Dominant ARF3 variants disrupt Golgi integrity and cause a neurodevelopmental disorder recapitulated in zebrafish.

Journal: Nature communications

Status: data only, 2 datasets cited

[40548] doi:10.1038/s41467-022-34367-6 [paper, repository]

Coordinated cortical thickness alterations across six neurodevelopmental and psychiatric disorders.

Journal: Nature communications

Authors' code: MICA-MNI/ENIGMA (BSD-3-Clause), Zenodo 4984124 (BSD-3-Clause), cng-lab/cngopen (MIT), Zenodo 7180120 (CC-BY-4.0), brainspace.readthedocs.io (no license), scottclowe/cbrewer2 (Apache-2.0), rmarkello/abagen (BSD-3-Clause)

Status: code verified, 271 files readable, 18 matches

[40549] doi:10.1038/s41467-022-34418-y [paper, repository]

Collective genomic segments with differential pleiotropic patterns between cognitive dimensions and psychopathology.

Journal: Nature communications

Authors' code: maxzylam/rho-HESS-wrapper (MIT), maxzylam/SumstatsQC (MIT), hakyimlab/MetaXcan (MIT)

Status: code verified, 140 files readable

[40550] doi:10.1038/s41467-022-34509-w [paper, repository]

Neural implementation of computational mechanisms underlying the continuous trade-off between cooperation and competition.

Journal: Nature communications

Authors' code: OSF sydea (no license)

Status: code verified, 10 files readable, 3 matches

[40551] doi:10.1038/s41467-022-34517-w [paper, repository]

An opioid-gated thalamoaccumbal circuit for the suppression of reward seeking in mice.

Journal: Nature communications

Authors' code: jimotis/Vollmer-et-al-2022-Nat-Comms (no license)

Status: empty repository

[40552] doi:10.1038/s41467-022-34589-8 [paper, data]

Molecular identity of proprioceptor subtypes innervating different muscle groups in mice.

Journal: Nature communications

Status: data only, 1 dataset cited

[40553] doi:10.1038/s41467-022-34626-6 [paper, repository]

dcHiC detects differential compartments across multiple Hi-C datasets.

Journal: Nature communications

Authors' code: ay-lab/LJI_RNA_SEQ_PIPELINE_V2 (no license), ay-lab/dcHiC (MIT), Zenodo 7256046 (other-open)

Status: code verified, 21 files readable, 1 match

[40554] doi:10.1038/s41531-022-00427-3 [paper, repository]

Treadmill training in Parkinson's disease is underpinned by the interregional connectivity in cortical-subcortical network.

Journal: NPJ Parkinson's disease

Authors' code: kenhding/fNIRS-fMRI-connectivity (MIT), fil.ion.ucl.ac.uk/spm (no license)

Status: code verified, 2 files readable

[40555] doi:10.1038/s41598-022-21496-7 [paper, repository]

Integrative cross-species analysis of GABAergic neuron cell types and their functions in Alzheimer's disease.

Journal: Scientific reports

Authors' code: shiywa/gabaergic-neuron-conservation-cross-species (no license)

Status: empty repository, 1 file readable

[40556] doi:10.1155/2022/1292648 [paper, data]

Overexpression of Pleckstrin Homology Domain-Containing Family A Member 4 Is Correlated with Poor Prognostic Outcomes and Immune Infiltration in Lower-Grade Glioma.

Journal: Disease markers

Status: data only, 1 dataset cited

[40557] doi:10.1523/eneuro.0325-22.2022 [paper, repository]

Cortico-Subthalamic Field Potentials Support Classification of the Natural Gait Cycle in Parkinson's Disease and Reveal Individualized Spectral Signatures.

Journal: eNeuro

Authors' code: openmind-consortium/Analysis-rcs-data (no license)

Status: code verified, 157 files readable

[40558] doi:10.2147/jir.s380524 [paper, data]

Pro-Inflammatory and Anti-Inflammatory Cytokines Levels are Significantly Altered in Cerebrospinal Fluid of Unruptured Intracranial Aneurysm (UIA) Patients.

Journal: Journal of inflammation research

Status: data only, 6 datasets cited

[40559] doi:10.2147/jir.s388322 [paper]

Sympathectomy Ameliorates CFA-Induced Mechanical Allodynia via Modulating Phenotype of Macrophages in Sensory Ganglion in Mice.

Journal: Journal of inflammation research

Status: data only

[40560] doi:10.3389/fnbot.2022.1067729 [paper, data]

Dance emotion recognition based on linear predictive Meir frequency cepstrum coefficient and bidirectional long short-term memory from robot environment.

Journal: Frontiers in neurorobotics

Status: data only, 1 dataset cited

[40561] doi:10.3389/fneur.2022.1022768 [paper, repository]

Human periventricular nodular heterotopia shows several interictal epileptic patterns and hyperexcitability of neuronal firing.

Journal: Frontiers in neurology

Authors' code: stephenwhitmarsh/epicode (GPL-3.0)

Status: code verified, 647 files readable, 3 matches

[40562] doi:10.3390/e24111641 [paper, data]

Similarity-Based Adaptive Window for Improving Classification of Epileptic Seizures with Imbalance EEG Data Stream.

Journal: Entropy (Basel, Switzerland)

Status: data only, 2 datasets cited

Thursday, 10 November 2022 (28 papers)

[40563] doi:10.1002/glia.24295 [paper, data]

Microglia and astrocyte activation is region-dependent in the α-synuclein mouse model of Parkinson's disease.

Journal: Glia

Status: data only, 4 datasets cited

[40564] doi:10.1002/hbm.26129 [paper, data]

The complexity of spontaneous brain activity changes in schizophrenia, bipolar disorder, and ADHD was examined using different variations of entropy.

Journal: Human brain mapping

Status: code on request, 2 datasets cited

[40565] doi:10.1007/s00221-022-06505-5 [paper, data]

The influence of tDCS on perceived bouncing/streaming.

Journal: Experimental brain research

Status: data only, 1 dataset cited

[40566] doi:10.1007/s00401-022-02511-7 [paper, data]

RNA methyltransferase NSun2 deficiency promotes neurodegeneration through epitranscriptomic regulation of tau phosphorylation.

Journal: Acta neuropathologica

Status: data only, 1 dataset cited

[40567] doi:10.1007/s10071-022-01711-8 [paper, data]

Visual categories and concepts in the avian brain.

Journal: Animal cognition

Status: data only, 3 datasets cited

[40568] doi:10.1016/j.neuron.2022.11.007 [paper]

Anatomical barriers against SARS-CoV-2 neuroinvasion at vulnerable interfaces visualized in deceased COVID-19 patients.

Journal: Neuron

Status: code on request

[40569] doi:10.1016/j.stemcr.2022.10.012 [paper]

Chitinase-like protein 3: A novel niche factor for mouse neural stem cells.

Journal: Stem cell reports

Status: data only

[40570] doi:10.1038/s41467-022-34552-7 [paper, data]

The 3D structure of lipidic fibrils of α-synuclein.

Journal: Nature communications

Status: data only, 1 dataset cited

[40571] doi:10.1038/s41598-022-23116-w [paper, data]

Achieving software-equivalent accuracy for hyperdimensional computing with ferroelectric-based in-memory computing.

Journal: Scientific reports

Status: data only, 1 dataset cited

[40572] doi:10.1038/s41598-022-23347-x [paper]

Deep learning signature of brain [¹⁸F]FDG PET associated with cognitive outcome of rapid eye movement sleep behavior disorder.

Journal: Scientific reports

Status: code on request

[40573] doi:10.1038/s41598-022-23784-8 [paper, repository]

Lactate-mediated neural plasticity genes emerged during the evolution of memory systems.

Journal: Scientific reports

Authors' code: eggnog.embl.de/version_3.0/downloads.html (no license), eggnogdb.embl.de/download/latest (no license)

Status: code found, still to be checked

[40574] doi:10.1038/s42003-022-04136-8 [paper, repository]

R1441C and G2019S LRRK2 knockin mice have distinct striatal molecular, physiological, and behavioral alterations.

Journal: Communications biology

Authors' code: Zenodo 7153493 (CC-BY-4.0)

Status: code verified, 1 file readable

[40575] doi:10.1111/epi.17446 [paper, repository]

Reliability of visual review of intracranial electroencephalogram in identifying the seizure onset zone: A systematic review and implications for the accuracy of automated methods.

Journal: Epilepsia

Authors' code: OSF cw4m2 (no license)

Status: empty repository

[40576] doi:10.1177/20494637221139472 [paper, repository]

The efficacy of sensory neural entrainment on acute and chronic pain: A systematic review and meta-analysis.

Journal: British journal of pain

Authors' code: OSF s64vj (no license)

Status: code verified, 1 file readable

[40577] doi:10.1186/s12915-022-01445-6 [paper, data]

Astrocytes in CA1 modulate schema establishment in the hippocampal-cortical neuron network.

Journal: BMC biology

Status: data only, 1 dataset cited

[40578] doi:10.1371/journal.pone.0274203 [paper, data]

Emotion recognition while applying cosmetic cream using deep learning from EEG data; cross-subject analysis.

Journal: PloS one

Status: data only, 1 dataset cited

[40579] doi:10.3389/fnagi.2022.1047908 [paper, data]

Exploring the pathogenesis linking traumatic brain injury and epilepsy <i>via</i> bioinformatic analyses.

Journal: Frontiers in aging neuroscience

Status: data only, 1 dataset cited

[40580] doi:10.3389/fnagi.2022.988143 [paper, data]

Integrated bioinformatics-based identification of diagnostic markers in Alzheimer disease.

Journal: Frontiers in aging neuroscience

Status: data only, 1 dataset cited

[40581] doi:10.3389/fncel.2022.1021592 [paper, data]

Huntingtin exon 1 deletion does not alter the subcellular distribution of huntingtin and gene transcription in mice.

Journal: Frontiers in cellular neuroscience

Status: data only, 1 dataset cited

[40582] doi:10.3389/fnhum.2022.1001692 [paper, repository]

Clinical and cortical similarities identified between bipolar disorder I and schizophrenia: A multivariate approach.

Journal: Frontiers in human neuroscience

Authors' code: trendscenter/gift (no license)

Status: code verified, 1,047 files readable

[40583] doi:10.3389/fnhum.2022.980280 [paper, repository]

Test-retest reliability of time-varying patterns of brain activity across single band and multiband resting-state functional magnetic resonance imaging in healthy older adults.

Journal: Frontiers in human neuroscience

Authors' code: OSF xy4gm (no license)

Status: empty repository

[40584] doi:10.3389/fnins.2022.1012964 [paper, data]

Voltage slope guided learning in spiking neural networks.

Journal: Frontiers in neuroscience

Status: data only, 1 dataset cited

[40585] doi:10.3389/fnins.2022.984647 [paper, repository]

Neural mechanisms of brand love relationship dynamics: Is the development of brand love relationships the same as that of interpersonal romantic love relationships?

Journal: Frontiers in neuroscience

Authors' code: neuroquery/neuroquery (BSD-3-Clause)

Status: code verified, 30 files readable

[40586] doi:10.3389/fnins.2022.989174 [paper, data]

Drug repurposing using meta-analysis of gene expression in Alzheimer's disease.

Journal: Frontiers in neuroscience

Status: data only, 1 dataset cited

[40587] doi:10.3389/fnut.2022.895317 [paper, data]

Impact of textual warnings on emotional brain responses to ultra-processed food products.

Journal: Frontiers in nutrition

Status: data only, 2 datasets cited

[40588] doi:10.3390/ijerph192214759 [paper, repository]

Aquatic Exercise on Brain Activity in Type 2 Diabetic: Randomized Clinical Trial.

Journal: International journal of environmental research and public health

Authors' code: random.org (no license)

Status: code verified

[40589] doi:10.7554/elife.71876 [paper, data]

Robotic multi-probe single-actuator inchworm neural microdrive.

Journal: eLife

Status: data only, 3 datasets cited

[40590] doi:10.7554/elife.80917 [paper, data]

Mcm2 promotes stem cell differentiation via its ability to bind H3-H4.

Journal: eLife

Status: data only, 1 dataset cited

Wednesday, 9 November 2022 (33 papers)

[40591] doi:10.1002/gepi.22505 [paper, repository]

Sparse prediction informed by genetic annotations using the logit normal prior for Bayesian regression tree ensembles.

Journal: Genetic epidemiology

Authors' code: cspanbauer/sparseBART (GPL-3.0)

Status: code verified, 104 files readable, 2 matches

[40592] doi:10.1002/mrm.29479 [paper, repository]

Simultaneous Optimization of MP2RAGE T&lt;sub&gt;1&lt;/sub&gt; -weighted (UNI) and FLuid And White matter Suppression (FLAWS) brain images at 7T using Extended Phase Graph (EPG) Simulations.

Journal: Magnetic resonance in medicine

Authors' code: mriphysics/EPG-X (MIT), siladokumaci/MP2RAGE_EPG_simulations (MIT), Zenodo 840023 (other-open)

Status: code verified, 73 files readable, 5 matches

[40593] doi:10.1007/s00406-022-01513-6 [paper, data]

Reduced cortical neuron number and neuron density in schizophrenia with focus on area 24: a post-mortem case-control study.

Journal: European archives of psychiatry and clinical neuroscience

Status: data only, 1 dataset cited

[40594] doi:10.1007/s00415-022-11479-z [paper, repository]

Resting-state functional MRI in multicenter studies on multiple sclerosis: a report on raw data quality and functional connectivity features from the Italian Neuroimaging Network Initiative.

Journal: Journal of neurology

Authors' code: Jfortin1/ComBatHarmonization (no license)

Status: code verified, 17 files readable

[40595] doi:10.1016/j.biopsych.2022.11.005 [paper, data]

Excitatory Dysfunction Drives Network and Calcium Handling Deficits in 16p11.2 Duplication Schizophrenia Induced Pluripotent Stem Cell-Derived Neurons.

Journal: Biological psychiatry

Status: data only, 1 dataset cited

[40596] doi:10.1016/j.isci.2022.105488 [paper]

Sensory regulation of absence seizures in a mouse model of &lt;i&gt;Gnb1&lt;/i&gt; encephalopathy.

Journal: iScience

Status: code on request

[40597] doi:10.1016/j.neuroimage.2022.119726 [paper, repository]

An automated pipeline for extracting histological stain area fraction for voxelwise quantitative MRI-histology comparisons.

Journal: NeuroImage

Authors' code: git.fmrib.ox.ac.uk/spet4877/ihcpy (no license)

Status: code found, still to be checked

[40598] doi:10.1038/s41419-022-05399-z [paper, repository]

Mitochondrial glutamine transporter SLC1A5_var, a potential target to suppress astrocyte reactivity in Parkinson's Disease.

Journal: Cell death & disease

Authors' code: OpenGene/fastp (MIT)

Status: code verified, 68 files readable

[40599] doi:10.1038/s41467-022-34068-0 [paper, repository]

Severe Neuro-COVID is associated with peripheral immune signatures, autoimmunity and neurodegeneration: a prospective cross-sectional study.

Journal: Nature communications

Authors' code: neurodebian/spm12 (GPL-2.0), WandrilleD/severe-neuro-COVID-cross-sectional-study-etteretal2022 (no license)

Status: code verified, 2,001 files readable, 7 matches

[40600] doi:10.1038/s41531-022-00416-6 [paper]

Microstructural but not macrostructural cortical degeneration occurs in Parkinson's disease with mild cognitive impairment.

Journal: NPJ Parkinson's disease

Status: code on request

[40601] doi:10.1038/s41586-022-05385-7 [paper, repository]

The neurons that restore walking after paralysis.

Journal: Nature

Authors' code: neurorestore/Magellan (MIT), neurorestore/Augur (MIT)

Status: code verified, 17 files readable, 5 matches

[40602] doi:10.1038/s41598-022-20579-9 [paper, data]

Moving beyond response times with accessible measures of manual dynamics.

Journal: Scientific reports

Status: data only, 1 dataset cited

[40603] doi:10.1038/s41598-022-22224-x [paper]

Temporal visual representation elicits early auditory-like responses in hearing but not in deaf individuals.

Journal: Scientific reports

Status: code on request

[40604] doi:10.1038/s41598-022-23769-7 [paper, repository]

A randomized pharmacological fMRI trial investigating D-cycloserine and brain plasticity mechanisms in learned pain responses.

Journal: Scientific reports

Authors' code: dans.knaw.nl/en/data-stations (no license)

Status: code verified

[40605] doi:10.1073/pnas.2203491119 [paper, repository]

Integrated gene analyses of de novo variants from 46,612 trios with autism and developmental disorders.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: tianyunwang/ndd_meta_2022 (no license)

Status: code verified, 8 files readable, 3 matches

[40606] doi:10.1098/rsif.2022.0576 [paper, repository]

Directional control of neurite outgrowth: emerging technologies for Parkinson's disease using magnetic nanoparticles and magnetic field gradients.

Journal: Journal of the Royal Society, Interface

Authors' code: doi:10.6084/m9.figshare.c.6266161 (no license)

Status: code found, still to be checked

[40607] doi:10.1098/rspb.2022.0999 [paper, repository]

Evolutionary Kuramoto dynamics.

Journal: Proceedings. Biological sciences

Authors' code: doi:10.6084/m9.figshare.c.6260173 (no license)

Status: code found, still to be checked

[40608] doi:10.1126/sciadv.abn2293 [paper, repository]

Uncovering the biological basis of control energy: Structural and metabolic correlates of energy inefficiency in temporal lobe epilepsy.

Journal: Science advances

Authors' code: Zenodo 4104748 (other-open), dalejn/cleanbib (MIT)

Status: code verified, 15 files readable, 2 matches

[40609] doi:10.1128/spectrum.01926-22 [paper, data]

Predominance of Escherichia-Shigella in Gut Microbiome and Its Potential Correlation with Elevated Level of Plasma Tumor Necrosis Factor Alpha in Patients with Tuberculous Meningitis.

Journal: Microbiology spectrum

Status: data only, 8 datasets cited

[40610] doi:10.1186/s12911-022-02038-7 [paper, repository]

Utilizing machine learning algorithms to predict subject genetic mutation class from in silico models of neuronal networks.

Journal: BMC medical informatics and decision making

Authors' code: gavinkress/Utilizing-Machine-Learning-Algorithms-to-Predict-Subject-Genetic-Mutation-Class-from-In-Silico-Model (no license)

Status: code verified, 3 files readable, 6 matches

[40611] doi:10.1186/s12974-022-02632-6 [paper, data]

Motor neuron survival is associated with reduced neuroinflammation and increased autophagy after brachial plexus avulsion injury in aldose reductase-deficient mice.

Journal: Journal of neuroinflammation

Status: data only, 1 dataset cited

[40612] doi:10.1186/s40478-022-01450-4 [paper, repository]

Dysregulation of neuroprotective astrocytes, a spectrum of microglial activation states, and altered hippocampal neurogenesis are revealed by single-cell RNA sequencing in prion disease.

Journal: Acta neuropathologica communications

Authors' code: jslota/scRNAseq-prion-infection (no license)

Status: code verified, 20 files readable, 17 matches

[40613] doi:10.1371/journal.pone.0265798 [paper, repository]

Neural correlates of eye contact and social function in autism spectrum disorder.

Journal: PloS one

Authors' code: fmri.org (no license)

Status: code verified

[40614] doi:10.18632/aging.204375 [paper, data]

Krill oil protects dopaminergic neurons from age-related degeneration through temporal transcriptome rewiring and suppression of several hallmarks of aging.

Journal: Aging

Status: data only, 1 dataset cited

[40615] doi:10.3389/fcimb.2022.1022879 [paper, data]

Probiotic <i>Pediococcus pentosaceus</i> ameliorates MPTP-induced oxidative stress <i>via</i> regulating the gut microbiota-gut-brain axis.

Journal: Frontiers in cellular and infection microbiology

Status: data only, 1 dataset cited

[40616] doi:10.3389/fnins.2022.977328 [paper, data]

Transfer learning in hand movement intention detection based on surface electromyography signals.

Journal: Frontiers in neuroscience

Status: data only, 1 dataset cited

[40617] doi:10.3389/fphar.2022.1025417 [paper, repository]

Mechanistic modeling as an explanatory tool for clinical treatment of chronic catatonia.

Journal: Frontiers in pharmacology

Authors' code: pdroberts/cascadia-behavioral-healthcare (GPL-3.0)

Status: code verified, 15 files readable, 6 matches

[40618] doi:10.3389/fphys.2022.1051544 [paper, repository]

Streamlined single-molecule RNA-FISH of core clock mRNAs in clock neurons in whole mount &lt;i&gt;Drosophila&lt;/i&gt; brains.

Journal: Frontiers in physiology

Authors' code: yeyuan98/rna_fish_analysis (MIT)

Status: code verified, 27 files readable, 2 matches

[40619] doi:10.3389/fpsyt.2022.1054380 [paper, data]

Altered striatal functional connectivity and structural dysconnectivity in individuals with bipolar disorder: A resting state magnetic resonance imaging study.

Journal: Frontiers in psychiatry

Status: data only, 1 dataset cited

[40620] doi:10.3390/ijms232213753 [paper, data]

Pathological 25 kDa C-Terminal Fragments of TDP-43 Are Present in Lymphoblastoid Cell Lines and Extracellular Vesicles from Patients Affected by Frontotemporal Lobar Degeneration and Neuronal Ceroidolipofuscinosis Carrying a <i>GRN</i> Mutation.

Journal: International journal of molecular sciences

Status: data only, 1 dataset cited

[40621] doi:10.3390/ijms232213792 [paper, data]

Transcriptome Alterations Caused by Social Defeat Stress of Various Durations in Mice and Its Relevance to Depression and Posttraumatic Stress Disorder in Humans: A Meta-Analysis.

Journal: International journal of molecular sciences

Status: data only, 1 dataset cited

[40622] doi:10.7554/elife.77432 [paper, repository]

Learning-related contraction of gray matter in rodent sensorimotor cortex is associated with adaptive myelination.

Journal: eLife

Authors' code: Zenodo 6414199 (MIT), Zenodo 6414200 (MIT)

Status: code verified, 8 files readable

[40623] doi:10.7554/elife.78002 [paper, repository]

Attention-deficit hyperactivity disorder symptoms and brain morphology: Examining confounding bias.

Journal: eLife

Authors' code: LorenzaDA/ADHD_brainmorphology_confounding (no license)

Status: code verified, 17 files readable, 5 matches

Tuesday, 8 November 2022 (34 papers)

[40624] doi:10.1002/acm2.13837 [paper, repository]

Clinical application of a template-guided automated planning routine.

Journal: Journal of applied clinical medical physics

Authors' code: WUSTL-ClinicalDev/ClinicalTemplateReader (other)

Status: empty repository, 2 files readable

[40625] doi:10.1002/hbm.26144 [paper, repository]

Benchmarking the generalizability of brain age models: Challenges posed by scanner variance and prediction bias.

Journal: Human brain mapping

Authors' code: ccplabwustl/robertjirsaraie (no license)

Status: code verified, 41 files readable, 3 matches

[40626] doi:10.1007/s10456-022-09859-0 [paper, data]

BMP10 functions independently from BMP9 for the development of a proper arteriovenous network.

Journal: Angiogenesis

Status: data only, 1 dataset cited

[40627] doi:10.1016/j.neuroimage.2022.119728 [paper, repository]

Feature-space selection with banded ridge regression.

Journal: NeuroImage

Authors' code: gallantlab/himalaya (BSD-3-Clause), gallantlab/tikreg (BSD-3-Clause), doi:10.12751/g-node.vy1zjd (no license), Zenodo 6349625 (other-open), gallantlab/pymoten (BSD-2-Clause)

Status: code verified, 166 files readable, 16 matches

[40628] doi:10.1016/j.neuroimage.2022.119740 [paper, repository]

Neurometabolic timecourse of healthy aging.

Journal: NeuroImage

Authors' code: OSF upnkd (no license)

Status: code verified, 3 files readable, 4 matches

[40629] doi:10.1016/j.neuroimage.2022.119742 [paper, repository]

Leveraging edge-centric networks complements existing network-level inference for functional connectomes.

Journal: NeuroImage

Authors' code: nitrc.org/projects/bioimagesuite (no license), SNeuroble/NBS-benchmarking (no license), SNeuroble/NBS_benchmarking (no license)

Status: code verified, 51 files readable

[40630] doi:10.1016/j.ynirp.2022.100145 [paper, repository]

Whole-brain computation of cognitive versus acoustic errors in music: A mismatch negativity study.

Journal: Neuroimage. Reports

Authors' code: leonardob92/LBPD-1.0 (GPL-3.0)

Status: code verified, 168 files readable, 10 matches

[40631] doi:10.1038/s41467-022-33611-3 [paper, repository]

Generalizable spelling using a speech neuroprosthesis in an individual with severe limb and vocal paralysis.

Journal: Nature communications

Authors' code: ChangLabUcsf/silent_spelling (no license)

Status: code verified, 44 files readable, 11 matches

[40632] doi:10.1038/s41467-022-34413-3 [paper, repository]

Spatially resolved gene regulatory and disease-related vulnerability map of the adult Macaque cortex.

Journal: Nature communications

Authors' code: single-cell-BGI/MBA (no license)

Status: code verified, 17 files readable, 18 matches

[40633] doi:10.1038/s41537-022-00311-2 [paper, data]

Disrupted local functional connectivity in schizophrenia: An updated and extended meta-analysis.

Journal: Schizophrenia (Heidelberg, Germany)

Status: data only, 1 dataset cited

[40634] doi:10.1038/s41598-022-22597-z [paper]

Intellectually able adults with autism spectrum disorder show typical resting-state EEG activity.

Journal: Scientific reports

Status: code on request

[40635] doi:10.1038/s41598-022-22649-4 [paper, repository]

Efficient computation of the steady-state and time-domain solutions of the photon diffusion equation in layered turbid media.

Journal: Scientific reports

Authors' code: heltonmc/LightPropagation.jl (MIT), heltonmc/Laplace.jl (MIT), JuliaMath/Bessels.jl (MIT)

Status: code verified, 80 files readable, 13 matches

[40636] doi:10.1038/s41598-022-22899-2 [paper, repository]

Finite element modeling of effects of tissue property variation on human optic nerve tethering during adduction.

Journal: Scientific reports

Authors' code: Zenodo 4287712 (CC-BY-4.0), Zenodo 4976263 (CC-BY-4.0)

Status: empty repository

[40637] doi:10.1038/s41598-022-23646-3 [paper, repository]

Single-nucleus transcriptomics of IDH1- and TP53-mutant glioma stem cells displays diversified commitment on invasive cancer progenitors.

Journal: Scientific reports

Authors' code: alexdobin/STAR (MIT)

Status: code verified, 331 files readable, 2 matches

[40638] doi:10.1038/s41598-022-23656-1 [paper, repository]

Graph-generative neural network for EEG-based epileptic seizure detection via discovery of dynamic brain functional connectivity.

Journal: Scientific reports

Authors' code: ICLab4DL/GGN (MIT), tsy935/eeg-gnn-ssl (MIT), xutianyu540/Transformer-network-with-a-three-tower-structure (no license), Diego999/pyGAT (MIT)

Status: code verified, 61 files readable, 3 matches

[40639] doi:10.1038/s42003-022-04128-8 [paper]

Long-term recovery behavior of brain tissue in hydrocephalus patients after shunting.

Journal: Communications biology

Status: code on request

[40640] doi:10.1073/pnas.2209870119 [paper, repository]

Hedgehog-interacting protein acts in the habenula to regulate nicotine intake.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: SCaligiuri/Photometry-Analysis-by-VM-CF (no license), alexcwsmith/singleCellTools (MIT)

Status: code verified, 17 files readable, 2 matches

[40641] doi:10.1140/epjds/s13688-022-00366-2 [paper, repository]

Enhancing short-term crime prediction with human mobility flows and deep learning architectures.

Journal: EPJ data science

Authors' code: GeoDS/COVID19USFlows (MIT), google-research/bert (Apache-2.0)

Status: code verified, 27 files readable, 2 matches

[40642] doi:10.1172/jci.insight.161214 [paper, data]

DIO3 protects against thyrotoxicosis-derived cranio-encephalic and cardiac congenital abnormalities.

Journal: JCI insight

Status: data only, 1 dataset cited

[40643] doi:10.1172/jci.insight.162753 [paper, data]

Dopamine-inhibited POMCDrd2+ neurons in the ARC acutely regulate feeding and body temperature.

Journal: JCI insight

Status: code on request, 1 dataset cited

[40644] doi:10.1186/s11658-022-00399-5 [paper, data]

X-box binding protein 1 as a key modulator in "healing endothelial cells", a novel EC phenotype promoting angiogenesis after MCAO.

Journal: Cellular & molecular biology letters

Status: data only, 2 datasets cited

[40645] doi:10.1186/s13550-022-00944-5 [paper, data]

Drug characteristics derived from kinetic modeling: combined ¹¹C-UCB-J human PET imaging with levetiracetam and brivaracetam occupancy of SV2A.

Journal: EJNMMI research

Status: data only, 1 dataset cited

[40646] doi:10.1186/s13578-022-00916-1 [paper]

An increase in Semaphorin 3A biases the axonal direction and induces an aberrant dendritic arborization in an in vitro model of human neural progenitor differentiation.

Journal: Cell & bioscience

Status: code on request

[40647] doi:10.15252/embj.2022111132 [paper, repository]

Temporal and sequential transcriptional dynamics define lineage shifts in corticogenesis.

Journal: The EMBO journal

Authors' code: Zenodo 31628 (BSD-3-Clause)

Status: code verified, 21 files readable

[40648] doi:10.2147/nss.s373367 [paper]

Obstructive Sleep Apnea Detection Based on Sleep Sounds via Deep Learning.

Journal: Nature and science of sleep

Status: code on request

[40649] doi:10.3389/fimmu.2022.1011129 [paper, data]

Microglial cells: Sensors for neuronal activity and microbiota-derived molecules.

Journal: Frontiers in immunology

Status: data only, 1 dataset cited

[40650] doi:10.3389/fmed.2022.1050436 [paper, repository]

Combining transfer learning with retinal lesion features for accurate detection of diabetic retinopathy.

Journal: Frontiers in medicine

Authors' code: kaggle.com/c/aptos2019-blindness-detection (no license)

Status: dead link

[40651] doi:10.3389/fnagi.2022.1028148 [paper, data]

Aberrant expression of FBXO22 is associated with propofol-induced synaptic plasticity and cognitive dysfunction in adult mice.

Journal: Frontiers in aging neuroscience

Status: data only, 1 dataset cited

[40652] doi:10.3389/fnint.2022.1041423 [paper, repository]

Reproducing and quantitatively validating a biologically-constrained point-neuron model of CA1 pyramidal cells.

Journal: Frontiers in integrative neuroscience

Authors' code: ncbi.nlm.nih.gov/nucleotide/182515 (no license), appukuttan-shailesh/Ferguson2014_Repro (no license)

Status: code verified, 63 files readable, 4 matches

[40653] doi:10.3390/nu14224718 [paper, data]

The Lignan-Rich Fraction from <i>Sambucus williamsii</i> Hance Exerts Bone Protective Effects via Altering Circulating Serotonin and Gut Microbiota in Rats.

Journal: Nutrients

Status: data only, 1 dataset cited

[40654] doi:10.7554/elife.74058 [paper, repository]

Sampling motion trajectories during hippocampal theta sequences.

Journal: eLife

Authors' code: bbujfalussy/tSeq (no license)

Status: code verified, 33 files readable, 13 matches

[40655] doi:10.7554/elife.76143 [paper, repository]

New insights into anatomical connectivity along the anterior-posterior axis of the human hippocampus using &lt;i&gt;in vivo&lt;/i&gt; quantitative fibre tracking.

Journal: eLife

Authors' code: Marshall-Dalton/Pipeline_for_anatomical_connectivity_along_the_anterior-posterior_axis_of_the_human_hippocampus (CC0-1.0)

Status: empty repository, 2 files readable

[40656] doi:10.7554/elife.81453 [paper, data]

A prebiotic diet modulates microglial states and motor deficits in α-synuclein overexpressing mice.

Journal: eLife

Status: data only, 1 dataset cited

[40657] doi:10.7554/elife.82709 [paper, data]

Two neuronal peptides encoded from a single transcript regulate mitochondrial complex III in <i>Drosophila</i>.

Journal: eLife

Status: data only, 2 datasets cited

Monday, 7 November 2022 (26 papers)

[40658] doi:10.1007/s13311-022-01309-5 [paper, data]

Distinctive Effects of D1 and D2 Receptor Agonists on Cortico-Basal Ganglia Oscillations in a Rodent Model of L-DOPA-Induced Dyskinesia.

Journal: Neurotherapeutics : the journal of the American Society for Experimental NeuroTherapeutics

Status: data only, 1 dataset cited

[40659] doi:10.1016/j.ebiom.2022.104336 [paper]

Hearing impairment is associated with cognitive decline, brain atrophy and tau pathology.

Journal: EBioMedicine

Status: code on request

[40660] doi:10.1016/j.neuroimage.2022.119737 [paper, repository]

Through the looking glass: Deep interpretable dynamic directed connectivity in resting fMRI.

Journal: NeuroImage

Authors' code: alvarouc/polyssifier (GPL-2.0), UsmanMahmood27/DICE (MIT)

Status: code verified, 29 files readable, 3 matches

[40661] doi:10.1016/j.nicl.2022.103253 [paper, repository]

Hospitalisation for COVID-19 predicts long lasting cerebrovascular impairment: A prospective observational cohort study.

Journal: NeuroImage. Clinical

Authors' code: kamentsvetanov/covid19_cerebrovascularburden (GPL-3.0), mrc-cbu/riksneurotools (GPL-3.0), kamentsvetanov/CommonalityAnalysis (GPL-3.0), netneurolab/hansen_receptors (CC-BY-NC-SA-4.0), frantisekvasa/rotate_parcellation (MIT), BMHLab/AHBAprocessing (no license), netneurolab/hansen_genescognition (no license)

Status: code verified, 460 files readable, 13 matches

[40662] doi:10.1038/s41467-022-34114-x [paper, repository]

Neural circuit dynamics of drug-context associative learning in the mouse hippocampus.

Journal: Nature communications

Authors' code: fordanic/image-registration (GPL-3.0), yanjuns/Sun_Giocomo_2022_NComms (no license)

Status: code verified, 159 files readable, 11 matches

[40663] doi:10.1038/s41467-022-34284-8 [paper, data]

Structural basis of organic cation transporter-3 inhibition.

Journal: Nature communications

Status: data only, 1 dataset cited

[40664] doi:10.1038/s41467-022-34459-3 [paper, repository]

Hippocampal convergence during anticipatory midbrain activation promotes subsequent memory formation.

Journal: Nature communications

Authors' code: JiaHou-Poh/TunedToLearn-AnticipatoryState (no license), JiaHou-Poh/ConvergenceState (no license)

Status: code verified, 4 files readable, 3 matches

[40665] doi:10.1038/s41467-022-34520-1 [paper, repository]

Sharp-wave ripple doublets induce complex dendritic spikes in parvalbumin interneurons in vivo.

Journal: Nature communications

Authors' code: SJLinda/Imagejmacro (GPL-2.0)

Status: empty repository, 1 file readable

[40666] doi:10.1038/s41551-022-00955-6 [paper, data]

Designing receptor agonists with enhanced pharmacokinetics by grafting macrocyclic peptides into fragment crystallizable regions.

Journal: Nature biomedical engineering

Status: data only, 1 dataset cited

[40667] doi:10.1038/s41598-022-22661-8 [paper, repository]

Wave-like patterns in parameter space interpreted as evidence for macroscopic effects resulting from quantum or quantum-like processes in the brain.

Journal: Scientific reports

Authors' code: OSF n5feg (no license)

Status: code verified, 2 files readable, 1 match

[40668] doi:10.1073/pnas.2200822119 [paper, repository]

A Bayesian switching linear dynamical system for estimating seizure chronotypes.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: seizurerisk (no license)

Status: code verified

[40669] doi:10.1073/pnas.2206828119 [paper, data]

A tool for monitoring cell type-specific focused ultrasound neuromodulation and control of chronic epilepsy.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 1 dataset cited

[40670] doi:10.1155/2022/1034983 [paper, data]

Forecasting Unplanned Purchase Behavior under Buy-One Get-One-Free Promotions Using Functional Near-Infrared Spectroscopy.

Journal: Computational intelligence and neuroscience

Status: data only, 1 dataset cited

[40671] doi:10.1186/s13195-022-01101-9 [paper, data]

Genetically predicted telomere length and Alzheimer's disease endophenotypes: a Mendelian randomization study.

Journal: Alzheimer's research & therapy

Status: data only, 5 datasets cited

[40672] doi:10.1186/s40708-022-00174-4 [paper, repository]

Assisted neuroscience knowledge extraction via machine learning applied to neural reconstruction metadata on NeuroMorpho.Org.

Journal: Brain informatics

Authors' code: gitlab.orc.gmu.edu/kbijari/neuroner-api (no license)

Status: code verified, 26 files readable, 2 matches

[40673] doi:10.1242/dev.200920 [paper, data]

Specialized germline P-bodies are required to specify germ cell fate in Caenorhabditis elegans embryos.

Journal: Development (Cambridge, England)

Status: data only, 1 dataset cited

[40674] doi:10.12659/msm.937564 [paper, data]

Mechanism of Progesterone in Treatment of Traumatic Brain Injury Based on Network Pharmacology and Molecular Docking Technology.

Journal: Medical science monitor : international medical journal of experimental and clinical research

Status: data only, 1 dataset cited

[40675] doi:10.1371/journal.pone.0276971 [paper, data]

Prevalence of visual snow and relation to attentional absorption.

Journal: PloS one

Status: data only, 1 dataset cited

[40676] doi:10.1371/journal.pone.0277037 [paper, data]

Knowledge of risk and protective factors for dementia in older German adults A population-based survey on risk and protective factors for dementia and internet-based brain health interventions.

Journal: PloS one

Status: data only, 1 dataset cited

[40677] doi:10.15252/embj.2022111648 [paper, repository]

An accessory prefrontal cortex-thalamus circuit sculpts maternal behavior in virgin female mice.

Journal: The EMBO journal

Authors' code: sommerc/coloco3surf (no license)

Status: code verified, 3 files readable

[40678] doi:10.3390/ijms232113644 [paper, repository]

Altered Expression of Genes Associated with Major Neurotransmitter Systems in the Reward-Related Brain Regions of Mice with Positive Fighting Experience.

Journal: International journal of molecular sciences

Authors' code: malacards.org/card/opiate_dependence (no license)

Status: code verified

[40679] doi:10.4269/ajtmh.22-0360 [paper, data]

Neuroangiostrongyliasis: Global Spread of an Emerging Tropical Disease.

Journal: The American journal of tropical medicine and hygiene

Status: data only, 12 datasets cited

[40680] doi:10.7554/elife.78635 [paper, repository]

A connectomics-based taxonomy of mammals.

Journal: eLife

Authors' code: netneurolab/suarez_connectometaxonomy (AGPL-3.0), estefanysuarez/rnns (no license), netneurolab/netneurotools (BSD-3-Clause), Zenodo 4913398 (other-open)

Status: code verified, 166 files readable, 12 matches

[40681] doi:10.7554/elife.79418 [paper, repository]

Whole-brain comparison of rodent and human brains using spatial transcriptomics.

Journal: eLife

Authors' code: abeaucha/MouseHumanTranscriptomicSimilarity (GPL-3.0)

Status: code verified, 65 files readable, 40 matches

[40682] doi:10.7554/elife.79535 [paper, repository]

Ultrafast simulation of large-scale neocortical microcircuitry with biophysically realistic neurons.

Journal: eLife

Authors' code: ViktorJOlah/Neuro_ANN (AGPL-3.0), doi:10.5061/dryad.0cfxpnw60 (no license)

Status: code verified, 128 files readable, 11 matches

[40683] doi:10.7554/elife.83030 [paper, data]

T cell deficiency precipitates antibody evasion and emergence of neurovirulent polyomavirus.

Journal: eLife

Status: data only, 1 dataset cited

Sunday, 6 November 2022 (6 papers)

[40684] doi:10.1002/mrm.29497 [paper, repository]

Rapid 3D absolute B₁ ⁺ mapping using a sandwiched train presaturated TurboFLASH sequence at 7 T for the brain and heart.

Journal: Magnetic resonance in medicine

Authors' code: jameslewiskent/sat2TFL (no license)

Status: code verified, 23 files readable, 8 matches

[40685] doi:10.1007/s00702-022-02556-8 [paper, data]

Targeting the brain 5-HT7 receptor to prevent hypomyelination in a rodent model of perinatal white matter injuries.

Journal: Journal of neural transmission (Vienna, Austria : 1996)

Status: data only, 4 datasets cited

[40686] doi:10.1016/j.neuroimage.2022.119738 [paper, repository]

Notes on fiber length measurements: A case study in the underbelly of open source neuroscience.

Journal: NeuroImage

Authors' code: balsa.wustl.edu/study/gmq9m (no license), balsa.wustl.edu/study/1k3l (no license)

Status: code verified

[40687] doi:10.1016/j.ynstr.2022.100501 [paper, repository]

Prebiotic supplementation modulates selective effects of stress on behavior and brain metabolome in aged mice.

Journal: Neurobiology of stress

Authors' code: sgoldenlab/simba (BSD-3-Clause), thomazbastiaanssen/Tjazi (GPL-3.0)

Status: code verified, 434 files readable, 3 matches

[40688] doi:10.1038/s41598-022-22255-4 [paper, data]

The sleep EEG envelope is a novel, neuronal firing-based human biomarker.

Journal: Scientific reports

Status: code on request, 1 dataset cited

[40689] doi:10.3390/biom12111643 [paper, repository]

A Comprehensive Study of De Novo Mutations on the Protein-Protein Interaction Interfaces Provides New Insights into Developmental Delay.

Journal: Biomolecules

Authors' code: Magiciantype69/PsychiPPI (Apache-2.0)

Status: code verified, 33 files readable, 1 match

Saturday, 5 November 2022 (14 papers)

[40690] doi:10.1002/glia.24291 [paper, data]

Glial progenitor cells of the adult human white and grey matter are contextually distinct.

Journal: Glia

Status: data only, 4 datasets cited

[40691] doi:10.1007/s00429-022-02589-5 [paper, repository]

Longitudinal prediction of motor dysfunction after stroke: a disconnectome study.

Journal: Brain structure & function

Authors' code: lidulyan/Estimate_CompScore_lm (no license), lidulyan/Hierarchical-Linear-Regression-R (no license), lidulyan/Stepwise-Lasso-Ridge (no license)

Status: dead link

[40692] doi:10.1016/j.isci.2022.105515 [paper]

miR-146a and miR-200b alter cognition by targeting NMDA receptor subunits.

Journal: iScience

Status: code on request

[40693] doi:10.1016/j.isci.2022.105516 [paper, repository]

Attentional capture mediates the emergence and suppression of intrusive memories.

Journal: iScience

Authors' code: Zenodo 7180660 (other-open)

Status: code verified

[40694] doi:10.1016/j.neuroimage.2022.119735 [paper, repository]

Functional network properties derived from wide-field calcium imaging differ with wakefulness and across cell type.

Journal: NeuroImage

Authors' code: bioimagesuite (no license)

Status: dead link

[40695] doi:10.1038/s41467-022-34328-z [paper, repository]

Diffusion MRI anisotropy in the cerebral cortex is determined by unmyelinated tissue features.

Journal: Nature communications

Authors' code: figshare 21342341 (CC-BY-4.0)

Status: code verified

[40696] doi:10.1038/s41597-022-01806-4 [paper, repository]

Pre- and post-surgery brain tumor multimodal magnetic resonance imaging data optimized for large scale computational modelling.

Journal: Scientific data

Authors' code: hub.docker.com/r/nipreps (no license), haerts/The-Virtual-Brain-Tumor-Patient (no license), bids-apps/rsHRF (MIT), AmoghJohri/TVB-Tests (no license), BrainModes/TVB-empirical-data-pipeline (no license), search.kg.ebrains.eu/instances/software (no license), OSF 5kfw3 (no license)

Status: code verified, 480 files readable, 17 matches

[40697] doi:10.1038/s41598-022-22041-2 [paper, data]

Brain activity during shadowing of audiovisual cocktail party speech, contributions of auditory-motor integration and selective attention.

Journal: Scientific reports

Status: code on request, 1 dataset cited

[40698] doi:10.1038/s41598-022-22387-7 [paper, repository]

Predicting overall survival in diffuse glioma from the presurgical connectome.

Journal: Scientific reports

Authors' code: srkesler (no license), srkesler/bnets (MIT)

Status: code verified, 1,077 files readable, 1 match

[40699] doi:10.1038/s41598-022-23411-6 [paper, data]

A systematic investigation reveals that Ishihara et al.'s (2008) STEARC effect only emerges when time is directly assessed.

Journal: Scientific reports

Status: data only, 1 dataset cited

[40700] doi:10.1186/s13059-022-02799-4 [paper, repository]

Deciphering the impact of genetic variation on human polyadenylation using APARENT2.

Journal: Genome biology

Authors' code: johli/aparent (MIT), segallab/PolyApredictors (no license), lzx325/DeeReCT-APA-repo (MIT), kundajelab/tfmodisco (MIT), vagarwal87/saluki_paper (Apache-2.0), johli/aparent-resnet (MIT), Zenodo 7140895 (other-open)

Status: code verified, 273 files readable, 17 matches

[40701] doi:10.3390/jimaging8110301 [paper, data]

Z2-<i>γ</i>: An Application of Zienkiewicz-Zhu Error Estimator to Brain Tumor Detection in MR Images.

Journal: Journal of imaging

Status: data only, 1 dataset cited

[40702] doi:10.3390/jpm12111850 [paper, repository]

Neuroimaging-Based Brain Age Estimation: A Promising Personalized Biomarker in Neuropsychiatry.

Journal: Journal of personalized medicine

Authors' code: james-cole/brainageR (LGPL-3.0)

Status: code verified, 9 files readable

[40703] doi:10.3390/s22218526 [paper, data]

Learning Optimal Time-Frequency-Spatial Features by the CiSSA-CSP Method for Motor Imagery EEG Classification.

Journal: Sensors (Basel, Switzerland)

Status: data only, 1 dataset cited

Friday, 4 November 2022 (36 papers)

[40704] doi:10.1002/hbm.26127 [paper, data]

Neural mechanisms of background and velocity effects in smooth pursuit eye movements.

Journal: Human brain mapping

Status: data only, 1 dataset cited

[40705] doi:10.1007/s00234-022-03074-w [paper, repository]

Commercial volumetric MRI reporting tools in multiple sclerosis: a systematic review of the evidence.

Journal: Neuroradiology

Authors' code: hughp1/fda_keywordsearch (no license)

Status: empty repository, 1 file readable

[40706] doi:10.1007/s11682-022-00739-1 [paper]

Altered spatio-temporal state patterns for functional dynamics estimation in first-episode drug-naive major depression.

Journal: Brain imaging and behavior

Status: code on request

[40707] doi:10.1007/s41465-022-00255-6 [paper]

The Effects of Different Theta and Beta Neurofeedback Training Protocols on Cognitive Control in ADHD.

Journal: Journal of cognitive enhancement : towards the integration of theory and practice

Status: code on request

[40708] doi:10.1016/j.isci.2022.105497 [paper, repository]

Neuronal cell types, projections, and spatial organization of the central amygdala.

Journal: iScience

Authors' code: figshare 17031605 (CC-BY-4.0)

Status: code verified, 12 files readable, 4 matches

[40709] doi:10.1016/j.isci.2022.105498 [paper, repository]

Persistence of hippocampal and striatal multivoxel patterns during awake rest after motor sequence learning.

Journal: iScience

Authors' code: BradleyRossKing/MVCS (GPL-3.0)

Status: code verified, 14 files readable, 4 matches

[40710] doi:10.1016/j.neuroimage.2022.119729 [paper, repository]

BLMM: Parallelised computing for big linear mixed models.

Journal: NeuroImage

Authors' code: TomMaullin/BLMM (no license), TomMaullin/BLM (no license)

Status: code verified, 52 files readable, 1 match

[40711] doi:10.1016/j.neuron.2022.10.018 [paper, data]

CROCCP2 acts as a human-specific modifier of cilia dynamics and mTOR signaling to promote expansion of cortical progenitors.

Journal: Neuron

Status: code on request, 1 dataset cited

[40712] doi:10.1016/j.nicl.2022.103252 [paper, repository]

BMAT: An open-source BIDS managing and analysis tool.

Journal: NeuroImage. Clinical

Authors' code: ColinVDB/BMAT (GPL-3.0)

Status: code verified, 6 files readable, 1 match

[40713] doi:10.1016/j.xpro.2022.101707 [paper, repository]

An fMRI protocol for administering liquid incentives to human participants.

Journal: STAR protocols

Authors' code: OSF upka4 (no license)

Status: code verified, 26 files readable, 5 matches

[40714] doi:10.1017/s0033291722003439 [paper]

Large-scale brain functional network abnormalities in social anxiety disorder.

Journal: Psychological medicine

Status: code on request

[40715] doi:10.1038/s41467-022-34129-4 [paper, repository]

Amyloid-associated increases in soluble tau relate to tau aggregation rates and cognitive decline in early Alzheimer's disease.

Journal: Nature communications

Authors' code: alexapichet/NatureComms2022_tau (no license)

Status: code verified, 2 files readable, 2 matches

[40716] doi:10.1038/s41467-022-34353-y [paper, repository]

Electronic photoreceptors enable prosthetic visual acuity matching the natural resolution in rats.

Journal: Nature communications

Authors' code: Zenodo 5081286 (other-open), cccharleschan/rp_multidim_circuit_solver (no license)

Status: code verified, 12 files readable, 2 matches

[40717] doi:10.1038/s41467-022-34465-5 [paper, repository]

Reward expectation extinction restructures and degrades CA1 spatial maps through loss of a dopaminergic reward proximity signal.

Journal: Nature communications

Authors' code: seethakris/HPCrewardpaper (no license)

Status: code verified, 21 files readable, 6 matches

[40718] doi:10.1038/s41523-022-00485-z [paper]

Sensory nerves enhance triple-negative breast cancer invasion and metastasis via the axon guidance molecule PlexinB3.

Journal: NPJ breast cancer

Status: code on request

[40719] doi:10.1038/s41598-022-21951-5 [paper]

Implication of EEG theta/alpha and theta/beta ratio in Alzheimer's and Lewy body disease.

Journal: Scientific reports

Status: code on request

[40720] doi:10.1038/s41598-022-22079-2 [paper]

The thresholding problem and variability in the EEG graph network parameters.

Journal: Scientific reports

Status: code on request

[40721] doi:10.1038/s41598-022-22984-6 [paper]

DeepPDT-Net: predicting the outcome of photodynamic therapy for chronic central serous chorioretinopathy using two-stage multimodal transfer learning.

Journal: Scientific reports

Status: code on request

[40722] doi:10.1038/s42003-022-04126-w [paper, repository]

Relay and higher-order thalamic nuclei show an intertwined functional association with cortical-networks.

Journal: Communications biology

Authors' code: figshare 21231875 (CC-BY-4.0)

Status: code verified, 3 files readable, 1 match

[40723] doi:10.1073/pnas.2123528119 [paper, repository]

A noradrenergic-hypothalamic neural substrate for stress-induced sleep disturbances.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: tortugar/Lab (no license)

Status: code verified, 33 files readable, 5 matches

[40724] doi:10.1093/braincomms/fcac284 [paper, repository]

Alterations of the axon initial segment in multiple sclerosis grey matter.

Journal: Brain communications

Authors' code: modeldb:114394 (no license), modeldb:229585 (no license)

Status: code found, still to be checked

[40725] doi:10.1109/jtehm.2022.3219625 [paper, data]

A Self-Attention-Guided 3D Deep Residual Network With Big Transfer to Predict Local Failure in Brain Metastasis After Radiotherapy Using Multi-Channel MRI.

Journal: IEEE journal of translational engineering in health and medicine

Status: data only, 1 dataset cited

[40726] doi:10.1126/sciadv.abo2336 [paper, repository]

Microtubule retrograde flow retains neuronal polarization in a fluctuating state.

Journal: Science advances

Authors' code: maxschelski/livecellreg (GPL-3.0), maxschelski/pyneurite (GPL-3.0), docs.anaconda.com (no license), pypi.org/project/numpy (no license), pypi.org/project/scikit-posthocs (no license), pypi.org/project/matplotlib (no license), pandas.pydata.org (no license), maxschelski/figureflow (GPL-3.0), doi:10.5061/dryad.2fqz612s8 (no license), Zenodo 7120626 (GPL-3.0)

Status: code verified, 228 files readable, 40 matches

[40727] doi:10.1126/sciadv.abo2343 [paper, data]

Local changes in microtubule network mobility instruct neuronal polarization and axon specification.

Journal: Science advances

Status: data only, 1 dataset cited

[40728] doi:10.1126/sciadv.abo7247 [paper, data]

The HUSH complex controls brain architecture and protocadherin fidelity.

Journal: Science advances

Status: data only, 4 datasets cited

[40729] doi:10.1126/sciadv.abq1081 [paper, data]

Astrocytic dysfunction induced by ABCA1 deficiency causes optic neuropathy.

Journal: Science advances

Status: data only, 1 dataset cited

[40730] doi:10.1186/s12974-022-02627-3 [paper, data]

Single cell profiling of CD45⁺ spinal cord cells reveals microglial and B cell heterogeneity and crosstalk following spinal cord injury.

Journal: Journal of neuroinflammation

Status: data only, 6 datasets cited

[40731] doi:10.1186/s13041-022-00973-0 [paper, data]

Olfactory marker protein contains a leucine-rich domain in the Ω-loop important for nuclear export.

Journal: Molecular brain

Status: data only, 3 datasets cited

[40732] doi:10.1186/s40359-022-00953-y [paper, data]

Aging and distractor resistance in working memory: Does emotional valence matter?

Journal: BMC psychology

Status: data only, 1 dataset cited

[40733] doi:10.1186/s40478-022-01465-x [paper, repository]

Single-cell spatial proteomic imaging for human neuropathology.

Journal: Acta neuropathologica communications

Authors' code: angelolab/MAUI (BSD-3-Clause), ionpath/mibilib (GPL-3.0), bryjcannon/MIBI_Brain_Analysis (MIT), angelolab/ark-analysis (MIT)

Status: code verified, 573 files readable, 14 matches

[40734] doi:10.3389/fmicb.2022.1009502 [paper, data]

Effect of stigma maydis polysaccharide on the gut microbiota and transcriptome of VPA induced autism model rats.

Journal: Frontiers in microbiology

Status: data only, 1 dataset cited

[40735] doi:10.3390/ijms232113543 [paper, repository]

Transcriptomic Studies of Antidepressant Action in Rodent Models of Depression: A First Meta-Analysis.

Journal: International journal of molecular sciences

Authors' code: guillaumecharbonnier/mw-ibrahim2022 (no license), guillaumecharbonnier.github.io/mw-ibrahim2022 (no license)

Status: code verified, 116 files readable, 4 matches

[40736] doi:10.3390/ijms232113552 [paper]

New Positive TRPC6 Modulator Penetrates Blood-Brain Barrier, Eliminates Synaptic Deficiency and Restores Memory Deficit in 5xFAD Mice.

Journal: International journal of molecular sciences

Status: code on request

[40737] doi:10.3390/jcm11216557 [paper, data]

On the Role of Stimulus-Response Context in Inhibitory Control in Alcohol Use Disorder.

Journal: Journal of clinical medicine

Status: data only, 1 dataset cited

[40738] doi:10.3390/jpm12111841 [paper, repository]

Altered Cerebral Processing of Videos in Children with Motor Dysfunction Suggests Broad Embodiment of Perceptual Cognitive Functions.

Journal: Journal of personalized medicine

Authors' code: parralab.org/isc (no license), CMU-Perceptual-Computing-Lab/openpose (BSD-2-Clause)

Status: code verified, 199 files readable

[40739] doi:10.7554/elife.75474 [paper, repository]

The interpretation of computational model parameters depends on the context.

Journal: eLife

Authors' code: mariaeckstein/slcn (no license)

Status: code verified, 97 files readable, 11 matches

Thursday, 3 November 2022 (30 papers, 29 on this page)

[40740] doi:10.1016/j.conctc.2022.101022 [paper, repository]

Associations between primary motor cortex organization, motor control and sensory tests during the clinical course of low back pain. A protocol for a cross-sectional and longitudinal case-control study.

Journal: Contemporary clinical trials communications

Authors' code: marlow17/surfaceanalysis (GPL-3.0)

Status: code verified, 20 files readable

[40741] doi:10.1016/j.lana.2022.100387 [paper]

Classification of Alzheimer's disease and frontotemporal dementia using routine clinical and cognitive measures across multicentric underrepresented samples: A cross sectional observational study.

Journal: Lancet regional health. Americas

Status: code on request

[40742] doi:10.1016/j.neo.2022.100846 [paper, repository]

The children's brain tumor network (CBTN) - Accelerating research in pediatric central nervous system tumors through collaboration and open science.

Journal: Neoplasia (New York, N.Y.)

Authors' code: Zenodo 6473913 (other-open), pediatricopentargets/openpedcan-analysis (CC0-1.0)

Status: code verified, 384 files readable, 2 matches

[40743] doi:10.1016/j.xops.2022.100244 [paper, repository]

RimNet: A Deep Neural Network Pipeline for Automated Identification of the Optic Disc Rim.

Journal: Ophthalmology science

Authors' code: TylerADavis/GlaucomaML (MIT)

Status: code verified, 13 files readable, 3 matches

[40744] doi:10.1038/s41467-022-34261-1 [paper, repository]

Tuning instability of non-columnar neurons in the salt-and-pepper whisker map in somatosensory cortex.

Journal: Nature communications

Authors' code: dfeldman189/Wang2022Data (MIT)

Status: code verified, 15 files readable, 3 matches

[40745] doi:10.1038/s41467-022-34283-9 [paper, repository]

Computational and neural mechanisms of statistical pain learning.

Journal: Nature communications

Authors' code: Zenodo 6997897 (other-open), nox-lab/paintsl_natcomms_2022 (MIT)

Status: code verified, 74 files readable, 4 matches

[40746] doi:10.1038/s41467-022-34326-1 [paper, repository]

Neural dynamics of phoneme sequences reveal position-invariant code for content and order.

Journal: Nature communications

Authors' code: kingjr/meg-masc (BSD-3-Clause)

Status: code verified, 4 files readable

[40747] doi:10.1038/s41467-022-34371-w [paper, repository]

Multimodal analysis demonstrating the shaping of functional gradients in the marmoset brain.

Journal: Nature communications

Authors' code: TrangeTung/marmoset_gradient (no license), Zenodo 7215504 (other-open)

Status: code verified, 304 files readable, 8 matches

[40748] doi:10.1038/s41598-022-23167-z [paper, data]

Glycosylated clusterin species facilitate Aβ toxicity in human neurons.

Journal: Scientific reports

Status: data only, 1 dataset cited

[40749] doi:10.1038/s42003-022-04109-x [paper, data]

The complexity of the stream of consciousness.

Journal: Communications biology

Status: data only, 1 dataset cited

[40750] doi:10.1038/s42003-022-04134-w [paper, data]

Prostaglandin-based rAAV-mediated glaucoma gene therapy in Brown Norway rats.

Journal: Communications biology

Status: data only, 1 dataset cited

[40751] doi:10.1073/pnas.2209382119 [paper, repository]

Incubation of palatable food craving is associated with brain-wide neuronal activation in mice.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: sgoldenlab/SMART2 (no license), hub.docker.com/repository/docker (no license), figshare 1 (no license)

Status: code verified, 46 files readable

[40752] doi:10.1126/science.abq6656 [paper, repository]

On-demand cell-autonomous gene therapy for brain circuit disorders.

Journal: Science (New York, N.Y.)

Authors' code: KullmannLab/Qiu_et_al_2022 (MIT)

Status: code verified, 5 files readable

[40753] doi:10.1186/s12916-022-02627-3 [paper, data]

Lower gestational age is associated with lower cortical volume and cognitive and educational performance in adolescence.

Journal: BMC medicine

Status: data only, 1 dataset cited

[40754] doi:10.1371/journal.pcbi.1010568 [paper, repository]

Synaptic reshaping of plastic neuronal networks by periodic multichannel stimulation with single-pulse and burst stimuli.

Journal: PLoS computational biology

Authors' code: jkrom/synResPla (no license)

Status: code verified, 28 files readable, 11 matches

[40755] doi:10.3389/fnagi.2022.964429 [paper]

Multi-omics analysis reveals neuroinflammation, activated glial signaling, and dysregulated synaptic signaling and metabolism in the hippocampus of aged mice.

Journal: Frontiers in aging neuroscience

Status: data only

[40756] doi:10.3389/fncom.2022.1030707 [paper, repository]

Invariance of object detection in untrained deep neural networks.

Journal: Frontiers in computational neuroscience

Authors' code: vsnnlab/Invariance (MIT)

Status: code verified, 27 files readable, 7 matches

[40757] doi:10.3389/fneur.2022.1024869 [paper, data]

Structuring and validating a prognostic model for low-grade gliomas based on the genes for plasma membrane tension.

Journal: Frontiers in neurology

Status: data only, 1 dataset cited

[40758] doi:10.3389/fnhum.2022.930849 [paper]

Neural classification maps for distinct word combinations in Broca's area.

Journal: Frontiers in human neuroscience

Status: code on request

[40759] doi:10.3389/fnhum.2022.976014 [paper, data]

Paired pulse transcranial magnetic stimulation in the assessment of biceps voluntary activation in individuals with tetraplegia.

Journal: Frontiers in human neuroscience

Status: data only, 1 dataset cited

[40760] doi:10.3389/fnhum.2022.997230 [paper, data]

No evidence for an effect of selective spatial attention on the development of secondary hyperalgesia: A replication study.

Journal: Frontiers in human neuroscience

Status: data only, 1 dataset cited

[40761] doi:10.3389/fnins.2022.989589 [paper, repository]

Decoding continuous variables from event-related potential (ERP) data with linear support vector regression using the Decision Decoding Toolbox (DDTBOX).

Journal: Frontiers in neuroscience

Authors' code: ddtbox/ddtbox (GPL-2.0)

Status: code verified, 63 files readable, 1 match

[40762] doi:10.3389/fpsyt.2022.1010977 [paper, data]

Identification of key long non-coding RNA-associated competing endogenous RNA axes in Brodmann Area 10 brain region of schizophrenia patients.

Journal: Frontiers in psychiatry

Status: data only, 1 dataset cited

[40763] doi:10.3389/fpsyt.2022.892302 [paper, data]

Blood-derived deoxyribonucleic acid methylation clusters associate with adverse social exposures and endophenotypes of stress-related psychiatric illness in a trauma-exposed cohort of women.

Journal: Frontiers in psychiatry

Status: data only, 1 dataset cited

[40764] doi:10.3390/nu14214643 [paper]

Prenatal Caffeine Exposure Is Linked to Elevated Sugar Intake and BMI, Altered Reward Sensitivity, and Aberrant Insular Thickness in Adolescents: An ABCD Investigation.

Journal: Nutrients

Status: code on request

[40765] doi:10.3390/s22218444 [paper, data]

Seizure Detection: A Low Computational Effective Approach without Classification Methods.

Journal: Sensors (Basel, Switzerland)

Status: data only, 2 datasets cited

[40766] doi:10.3390/s22218467 [paper, repository]

M1M2: Deep-Learning-Based Real-Time Emotion Recognition from Neural Activity.

Journal: Sensors (Basel, Switzerland)

Authors' code: PiasTanmoy/M1M2-Deep-Learning-Based-Real-Time-Emotion-Recognition-from-Neural-Activity (no license)

Status: code verified, 6 files readable, 4 matches

[40767] doi:10.3892/etm.2022.11678 [paper, data]

Network pharmacology and molecular docking analysis on molecular targets and mechanisms of <i>Gastrodia elata</i> Blume in the treatment of ischemic stroke.

Journal: Experimental and therapeutic medicine

Status: data only, 1 dataset cited

[40768] doi:10.7554/elife.75197 [paper, data]

Intracranial human recordings reveal association between neural activity and perceived intensity for the pain of others in the insula.

Journal: eLife

Status: data only, 1 dataset cited

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