Every paper, by date: page 184

44,644 papers with a page: 24,189 with their authors' code, 4,955 with code on request, 15,495 with data only. The most recent first, 224 a page. Page 184 of 200: 26 October 2022 to 13 October 2022.

Wednesday, 26 October 2022 (30 papers, 10 on this page)

[40993] doi:10.3389/fnins.2022.1015752 [paper, repository]

Reconstruction of perceived face images from brain activities based on multi-attribute constraints.

Journal: Frontiers in neuroscience

Authors' code: round99/Perceived-face-reconstruction (no license)

Status: code verified, 23 files readable, 2 matches

[40994] doi:10.3389/fonc.2022.1029684 [paper, data]

Predictive value of baseline metabolic tumor burden on ¹⁸F-FDG PET/CT for brain metastases in patients with locally advanced non-small-cell lung cancer.

Journal: Frontiers in oncology

Status: data only, 5 datasets cited

[40995] doi:10.3389/fpain.2022.1017344 [paper, repository]

Dorsal root ganglion stimulation produces differential effects on action potential propagation across a population of biophysically distinct C-neurons.

Journal: Frontiers in pain research (Lausanne, Switzerland)

Authors' code: emcee.readthedocs.io (no license)

Status: code verified

[40996] doi:10.3389/fpsyt.2022.1006109 [paper, data]

Differential H3K9me2 heterochromatin levels and concordant mRNA expression in postmortem brain tissue of individuals with schizophrenia, bipolar, and controls.

Journal: Frontiers in psychiatry

Status: data only, 1 dataset cited

[40997] doi:10.3390/e24111540 [paper, data]

Epileptic Seizure Detection Using Geometric Features Extracted from SODP Shape of EEG Signals and AsyLnCPSO-GA.

Journal: Entropy (Basel, Switzerland)

Status: data only, 2 datasets cited

[40998] doi:10.7554/elife.78345 [paper, repository]

Little skate genome provides insights into genetic programs essential for limb-based locomotion.

Journal: eLife

Authors' code: chulbioinfo/chrorthlink (GPL-3.0)

Status: code verified, 11 files readable, 1 match

[40999] doi:10.7554/elife.80627 [paper, repository]

Evolutionary shaping of human brain dynamics.

Journal: eLife

Authors' code: jchrispang/evolution-brain-tuning (Apache-2.0)

Status: code verified, 32 files readable, 21 matches

[41000] doi:10.7554/elife.81248 [paper, repository]

Rapid reconstruction of neural circuits using tissue expansion and light sheet microscopy.

Journal: eLife

Authors' code: JaneliaSciComp/exllsm-circuit-reconstruction (BSD-3-Clause), saalfeldlab/stitching-spark (GPL-2.0), JaneliaSciComp/exllsm-neuron-segmentation (BSD-3-Clause), JaneliaSciComp/exllsm-synapse-detector (BSD-3-Clause), Zenodo 3543000 (CC-BY-4.0), Zenodo 6584316 (BSD-3-Clause), Zenodo 5676566 (other-open), Zenodo 5676564 (other-open), janeliascicomp/exllsm-fiji-plugins (no license)

Status: code verified, 365 files readable, 4 matches

[41001] doi:10.7554/elife.81527 [paper, repository]

Descending neuron population dynamics during odor-evoked and spontaneous limb-dependent behaviors.

Journal: eLife

Authors' code: Zenodo 5501119 (CC-BY-4.0), Zenodo 6475468 (other-open), Zenodo 6475525 (other-open), NeLy-EPFL/utils_ballrot (no license), nely-epfl/df3dpostprocessing (MIT), NeLy-EPFL/DN_population_analysis (MIT), nely-epfl/noisy2way (MIT), nely-epfl/ofco (MIT)

Status: code verified, 171 files readable, 12 matches

[41002] doi:10.7717/peerj-cs.1090 [paper, repository]

Towards survival prediction of cancer patients using medical images.

Journal: PeerJ. Computer science

Authors' code: supp:PMC9680890/peerj-cs-08-1090-s001.zip (no license)

Status: code verified, 46 files readable, 3 matches

Tuesday, 25 October 2022 (24 papers)

[41003] doi:10.1002/cam4.5381 [paper, data]

Cyclin-dependent kinase subunit2 (CKS2) promotes malignant phenotypes and epithelial-mesenchymal transition-like process in glioma by activating TGFβ/SMAD signaling.

Journal: Cancer medicine

Status: data only, 1 dataset cited

[41004] doi:10.1016/j.nicl.2022.103248 [paper, repository]

T1w/FLAIR ratio standardization as a myelin marker in MS patients.

Journal: NeuroImage. Clinical

Authors' code: treanus/KUL_NIS (MPL-2.0)

Status: code verified, 59 files readable, 10 matches

[41005] doi:10.1038/s41467-022-33514-3 [paper]

Salience memories formed by value, novelty and aversiveness jointly shape object responses in the prefrontal cortex and basal ganglia.

Journal: Nature communications

Status: code on request

[41006] doi:10.1038/s41467-022-34020-2 [paper, repository]

Cone opponent functional domains in primary visual cortex combine signals for color appearance mechanisms.

Journal: Nature communications

Authors' code: Peichao/COFD_Nature-Commun (no license), Experica (no license)

Status: code verified, 17 files readable, 5 matches

[41007] doi:10.1038/s41536-022-00261-4 [paper, data]

Loss of Mst1/2 activity promotes non-mitotic hair cell generation in the neonatal organ of Corti.

Journal: NPJ Regenerative medicine

Status: data only, 1 dataset cited

[41008] doi:10.1038/s41539-022-00139-6 [paper, repository]

Understanding the role of eye movement consistency in face recognition and autism through integrating deep neural networks and hidden Markov models.

Journal: NPJ science of learning

Authors' code: visal.cs.cityu.edu.hk/research/dnnhmm (no license)

Status: code verified

[41009] doi:10.1038/s41598-022-21375-1 [paper, repository]

Task-dependent fractal patterns of information processing in working memory.

Journal: Scientific reports

Authors' code: supp:PMC9596406/41598_2022_21375_MOESM6_ESM.r (no license)

Status: code verified, 1 file readable

[41010] doi:10.1038/s41598-022-22670-7 [paper, repository]

Cognitive penetrability of scene representations based on horizontal image disparities.

Journal: Scientific reports

Authors' code: klabhub/bayesFactor (MIT)

Status: code verified, 46 files readable

[41011] doi:10.1093/braincomms/fcac271 [paper, repository]

Thirty novel sequence variants impacting human intracranial volume.

Journal: Brain communications

Authors' code: bulik/ldsc (GPL-3.0), stephenturner/qqman (GPL-3.0), cran/MendelianRandomization (no license)

Status: code verified, 80 files readable, 6 matches

[41012] doi:10.1155/2022/3991295 [paper, data]

Secure Medical Data Model Using Integrated Transformed Paillier and KLEIN Algorithm Encryption Technique with Elephant Herd Optimization for Healthcare Applications.

Journal: Journal of healthcare engineering

Status: data only, 1 dataset cited

[41013] doi:10.1186/s40035-022-00319-9 [paper, data]

APOE ε4-dependent effects on the early amyloid pathology in induced neurons of patients with Alzheimer's disease.

Journal: Translational neurodegeneration

Status: data only, 1 dataset cited

[41014] doi:10.1267/ahc.22-00043 [paper, data]

Optimized Mouse-on-mouse Immunohistochemical Detection of Mouse ESR2 Proteins with PPZ0506 Monoclonal Antibody.

Journal: Acta histochemica et cytochemica

Status: data only, 1 dataset cited

[41015] doi:10.1371/journal.pone.0275063 [paper, repository]

Data-driven approach for the delineation of the irritative zone in epilepsy in MEG.

Journal: PloS one

Authors' code: MEG-SPIKES/megspikes (MIT), meg-spikes/aspire-alphacsc-epilepsy-meg (MIT)

Status: code verified, 65 files readable, 10 matches

[41016] doi:10.1371/journal.pone.0275997 [paper, data]

The influence of distal and proximal muscle activation on neural crosstalk.

Journal: PloS one

Status: data only, 1 dataset cited

[41017] doi:10.3389/fimmu.2022.1027794 [paper, data]

A novel model based on necroptosis-related genes for predicting immune status and prognosis in glioma.

Journal: Frontiers in immunology

Status: data only, 1 dataset cited

[41018] doi:10.3389/fnagi.2022.1011812 [paper, data]

Lesions causing post-stroke spasticity localize to a common brain network.

Journal: Frontiers in aging neuroscience

Status: data only, 1 dataset cited

[41019] doi:10.3389/fnins.2022.830143 [paper, data]

Development of a Super-Resolution Scheme for Pediatric Magnetic Resonance Brain Imaging Through Convolutional Neural Networks.

Journal: Frontiers in neuroscience

Status: data only, 1 dataset cited

[41020] doi:10.3389/fpsyt.2022.969206 [paper, repository]

The origins of evil: From lesions to the functional architecture of the antisocial brain.

Journal: Frontiers in psychiatry

Authors' code: juryxy/JuSpace (no license)

Status: code verified, 21 files readable

[41021] doi:10.3390/bioengineering9110612 [paper, data]

Traumatic Brain Injury Biomarkers, Simulations and Kinetics.

Journal: Bioengineering (Basel, Switzerland)

Status: data only, 9 datasets cited

[41022] doi:10.3390/ijms232112847 [paper, data]

The <i>PINK1</i> p.Asn521Thr Variant Is Associated with Earlier Disease Onset in <i>GRN/C9orf72</i> Frontotemporal Lobar Degeneration.

Journal: International journal of molecular sciences

Status: data only, 2 datasets cited

[41023] doi:10.3390/ijms232112891 [paper, data]

Melatonin Attenuates H₂O₂-Induced Oxidative Injury by Upregulating LncRNA NEAT1 in HT22 Hippocampal Cells.

Journal: International journal of molecular sciences

Status: data only, 1 dataset cited

[41024] doi:10.7554/elife.78162 [paper, repository]

Neural defensive circuits underlie helping under threat in humans.

Journal: eLife

Authors' code: OSF 9cuva (no license), OSF nb6cf (no license)

Status: code verified, 30 files readable, 7 matches

[41025] doi:10.7554/elife.79824 [paper, repository]

Normative decision rules in changing environments.

Journal: eLife

Authors' code: nwbarendregt/AdaptNormThresh (no license)

Status: code verified, 81 files readable, 15 matches

[41026] doi:10.7554/elife.80280 [paper, repository]

Coding of latent variables in sensory, parietal, and frontal cortices during closed-loop virtual navigation.

Journal: eLife

Authors' code: BalzaniEdoardo/PGAM (MIT), OSF d7wtz (no license)

Status: code verified, 64 files readable, 7 matches

Monday, 24 October 2022 (28 papers)

[41027] doi:10.1016/j.ajhg.2022.09.012 [paper]

Bi-allelic CAMSAP1 variants cause a clinically recognizable neuronal migration disorder.

Journal: American journal of human genetics

Status: code on request

[41028] doi:10.1016/j.neuron.2022.10.001 [paper, repository]

Learning shapes cortical dynamics to enhance integration of relevant sensory input.

Journal: Neuron

Authors' code: Zenodo 7109995 (CC-BY-4.0)

Status: code verified, 5 files readable

[41029] doi:10.1038/s41467-022-33932-3 [paper, data]

Microglial debris is cleared by astrocytes via C4b-facilitated phagocytosis and degraded via RUBICON-dependent noncanonical autophagy in mice.

Journal: Nature communications

Status: data only, 4 datasets cited

[41030] doi:10.1038/s41592-022-01621-0 [paper, repository]

Automated synapse-level reconstruction of neural circuits in the larval zebrafish brain.

Journal: Nature methods

Authors' code: gitlab.mpcdf.mpg.de/pschuber/syconn (GPL-2.0), knossos-project/knossos (GPL-2.0), ariadne-ai/agglomeration_proofreading (AGPL-3.0)

Status: code verified, 346 files readable, 3 matches

[41031] doi:10.1038/s41592-022-01624-x [paper, repository]

SyConn2: dense synaptic connectivity inference for volume electron microscopy.

Journal: Nature methods

Authors' code: ELEKTRONN/elektronn3 (MIT), seung-lab/zmesh (GPL-3.0), StructuralNeurobiologyLab/SyConn (GPL-2.0), StructuralNeurobiologyLab/MorphX (GPL-2.0)

Status: code verified, 285 files readable, 31 matches

[41032] doi:10.1038/s41593-022-01179-2 [paper, repository]

Reciprocal cortico-amygdala connections regulate prosocial and selfish choices in mice.

Journal: Nature neuroscience

Authors' code: doi:10.5061/dryad.bnzs7h4dv (no license), Zenodo 7258344 (MIT), Zenodo 7258345 (MIT)

Status: code verified, 2 files readable, 1 match

[41033] doi:10.1073/pnas.2123424119 [paper, repository]

Sleep deprivation and hippocampal ripple disruption after one-session learning eliminate memory expression the next day.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: genzellab/Fast_and_slow_hfos (CC0-1.0)

Status: code verified, 94 files readable, 9 matches

[41034] doi:10.1073/pnas.2123426119 [paper, repository]

Multiple traces and altered signal-to-noise in systems consolidation: Evidence from the 7T fMRI Natural Scenes Dataset.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: Zenodo 11813 (MIT)

Status: code verified

[41035] doi:10.1073/pnas.2123427119 [paper, data]

Recurrent Hippocampo-neocortical sleep-state divergence in humans.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 1 dataset cited

[41036] doi:10.1073/pnas.2123428119 [paper, repository]

Shaping overnight consolidation via slow-oscillation closed-loop targeted memory reactivation.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: OSF 2hbxz (no license)

Status: code verified, 11 files readable

[41037] doi:10.1073/pnas.2123432119 [paper, repository]

A model of autonomous interactions between hippocampus and neocortex driving sleep-dependent memory consolidation.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: schapirolab/SinghNormanSchapiro_PNAS22 (no license)

Status: code verified, 13 files readable

[41038] doi:10.1073/pnas.2203748119 [paper, repository]

Mammalian octopus cells are direction selective to frequency sweeps by excitatory synaptic sequence detection.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: hsinweilu/Lu2022 (no license)

Status: code verified, 9 files readable, 2 matches

[41039] doi:10.1073/pnas.2207632119 [paper, repository]

Energy-efficient network activity from disparate circuit parameters.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: mackelab/stg_energy (no license), mackelab/sbi (Apache-2.0), mackelab/pyloric (MIT)

Status: code verified, 565 files readable, 4 matches

[41040] doi:10.1073/pnas.2212152119 [paper, repository]

Neuronal signature of spatial decision-making during navigation by freely moving rats by using calcium imaging.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: rufusmitchellheggs/Neural-Predictive-Spatial-Coding (no license)

Status: code verified, 5 files readable, 7 matches

[41041] doi:10.1073/pnas.2214072119 [paper, data]

A neural signature of the vividness of prospective thought is modulated by temporal proximity during intertemporal decision making.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 3 datasets cited

[41042] doi:10.1172/jci.insight.157714 [paper, data]

Early-life low-calorie sweetener consumption disrupts glucose regulation, sugar-motivated behavior, and memory function in rats.

Journal: JCI insight

Status: data only, 1 dataset cited

[41043] doi:10.1172/jci.insight.161769 [paper, data]

Benefits of global mutant huntingtin lowering diminish over time in a Huntington's disease mouse model.

Journal: JCI insight

Status: data only, 1 dataset cited

[41044] doi:10.1371/journal.pone.0276680 [paper, repository]

Unique estimation in EEG analysis by the ordering ICA.

Journal: PloS one

Authors' code: yoshitatsumatsuda/orderingica (no license)

Status: code verified, 5 files readable

[41045] doi:10.1523/jneurosci.0112-21.2022 [paper, repository]

A Role for Thalamic Projection GABAergic Neurons in Circadian Responses to Light.

Journal: The Journal of neuroscience : the official journal of the Society for Neuroscience

Authors' code: dd119-ic/BrockManuscript (no license), padraic-padraic/rgc (no license)

Status: code verified, 21 files readable, 4 matches

[41046] doi:10.1523/jneurosci.0375-22.2022 [paper, repository]

A Common Neural Account for Social and Nonsocial Decisions.

Journal: The Journal of neuroscience : the official journal of the Society for Neuroscience

Authors' code: OSF hrgp5 (no license)

Status: code verified, 1,685 files readable, 2 matches

[41047] doi:10.3389/fcell.2022.884748 [paper, repository]

Single-cell and single-nuclei RNA sequencing as powerful tools to decipher cellular heterogeneity and dysregulation in neurodegenerative diseases.

Journal: Frontiers in cell and developmental biology

Authors' code: broadinstitute/Drop-seq (MIT), murali-group/BEELINE (GPL-3.0)

Status: code verified, 832 files readable, 3 matches

[41048] doi:10.3389/fimmu.2022.960906 [paper, data]

The significance of glycolysis index and its correlations with immune infiltrates in Alzheimer's disease.

Journal: Frontiers in immunology

Status: data only, 1 dataset cited

[41049] doi:10.3389/fneur.2022.977180 [paper, data]

MELK is a prognostic biomarker and correlated with immune infiltration in glioma.

Journal: Frontiers in neurology

Status: data only, 1 dataset cited

[41050] doi:10.3389/fnmol.2022.1013933 [paper, data]

New insight into neurological degeneration: Inflammatory cytokines and blood-brain barrier.

Journal: Frontiers in molecular neuroscience

Status: data only, 1 dataset cited

[41051] doi:10.3390/e24111514 [paper, repository]

QAScore-An Unsupervised Unreferenced Metric for the Question Generation Evaluation.

Journal: Entropy (Basel, Switzerland)

Authors' code: google-research/bleurt (Apache-2.0)

Status: code verified, 26 files readable, 1 match

[41052] doi:10.3390/s22218128 [paper, data]

An Intelligent Motor Imagery Detection System Using Electroencephalography with Adaptive Wavelets.

Journal: Sensors (Basel, Switzerland)

Status: data only, 1 dataset cited

[41053] doi:10.7554/elife.76145 [paper, data]

Neural dynamics of causal inference in the macaque frontoparietal circuit.

Journal: eLife

Status: data only, 1 dataset cited

[41054] doi:10.7554/elife.79917 [paper, repository]

Na&lt;sub&gt;V&lt;/sub&gt;1.1 is essential for proprioceptive signaling and motor behaviors.

Journal: eLife

Authors' code: doctheagrif/Current-Clamp-Matlab-Code_O-Neil-DA (no license), darikoneil/PropAnalysisScripts (GPL-3.0)

Status: code verified, 31 files readable

Sunday, 23 October 2022 (3 papers)

[41055] doi:10.1113/jp283238 [paper, repository]

Physiological insight into the conserved properties of Caenorhabditis elegans acid-sensing degenerin/epithelial sodium channels.

Journal: The Journal of physiology

Authors' code: biobakery/cgfp (no license)

Status: dead link

[41056] doi:10.1186/s12864-022-08953-3 [paper, data]

Quantitative analysis of transcriptome dynamics provides novel insights into developmental state transitions.

Journal: BMC genomics

Status: data only, 4 datasets cited

[41057] doi:10.1186/s40478-022-01453-1 [paper, data]

High-resolution transcriptomics informs glial pathology in human temporal lobe epilepsy.

Journal: Acta neuropathologica communications

Status: data only, 8 datasets cited

Saturday, 22 October 2022 (9 papers)

[41058] doi:10.1016/j.isci.2022.105428 [paper, repository]

Decomposition into dynamic features reveals a conserved temporal structure in hand kinematics.

Journal: iScience

Authors' code: Oxford-Neural-Interfacing/handkinematics (no license), Zenodo 7213049 (other-open)

Status: code verified, 40 files readable, 5 matches

[41059] doi:10.1016/j.isci.2022.105429 [paper]

Influence of data sampling methods on the representation of neural spiking activity <i>in vivo</i>.

Journal: iScience

Status: code on request

[41060] doi:10.1038/s41467-022-33580-7 [paper, repository]

Layer-specific, retinotopically-diffuse modulation in human visual cortex in response to viewing emotionally expressive faces.

Journal: Nature communications

Authors' code: layerfMRI/LAYNII (BSD-3-Clause), justingardner/mrTools (other), noahbenson/neuropythy (AGPL-3.0), Zenodo 7017856 (CC-BY-4.0), OSF f9vqc (no license), Zenodo 1299483 (other-open), tinaliutong/layerfmri_amg_v1 (no license)

Status: code verified, 1,466 files readable, 5 matches

[41061] doi:10.1038/s41467-022-34032-y [paper, repository]

Protein language models trained on multiple sequence alignments learn phylogenetic relationships.

Journal: Nature communications

Authors' code: matteofigliuzzi/bmDCA (GPL-3.0), Bitbol-Lab/Phylogeny-Partners (no license), Zenodo 7096792 (other-open), bitbol-lab/phylogeny-msa-transformer (MIT)

Status: code verified, 176 files readable, 1 match

[41062] doi:10.1038/s41598-022-22117-z [paper, data]

Evidence of visual crossmodal reorganization positively relates to speech outcomes in cochlear implant users.

Journal: Scientific reports

Status: data only, 1 dataset cited

[41063] doi:10.1038/s41598-022-22430-7 [paper, repository]

Neuromodulator-dependent synaptic tagging and capture retroactively controls neural coding in spiking neural networks.

Journal: Scientific reports

Authors' code: Zenodo 4429195 (other-open), jlubo/memory-consolidation-stc (Apache-2.0)

Status: code verified, 79 files readable

[41064] doi:10.1038/s41598-022-22566-6 [paper, data]

Feasibility of the optimal cerebral perfusion pressure value identification without a delay that is too long.

Journal: Scientific reports

Status: data only, 1 dataset cited

[41065] doi:10.1177/13623613221127512 [paper, repository]

Anxiety in children and youth with autism spectrum disorder and the association with amygdala subnuclei structure.

Journal: Autism : the international journal of research and practice

Authors' code: DevelopingBrainLab/amygdala_segmentation_Freesurfer (no license)

Status: code verified, 4 files readable

[41066] doi:10.1186/s13046-022-02506-y [paper, data]

Dissecting super-enhancer driven transcriptional dependencies reveals novel therapeutic strategies and targets for group 3 subtype medulloblastoma.

Journal: Journal of experimental & clinical cancer research : CR

Status: data only, 7 datasets cited

Friday, 21 October 2022 (20 papers)

[41067] doi:10.1002/btm2.10424 [paper, data]

Intraosseous administration into the skull: Potential blood-brain barrier bypassing route for brain drug delivery.

Journal: Bioengineering & translational medicine

Status: data only, 1 dataset cited

[41068] doi:10.1038/s41419-022-05340-4 [paper, repository]

Diverse maturity-dependent and complementary anti-apoptotic brakes safeguard human iPSC-derived neurons from cell death.

Journal: Cell death & disease

Authors' code: ahoffrichter/Wilkens_et_al_2022_sequencing (no license)

Status: code verified, 7 files readable, 4 matches

[41069] doi:10.1038/s41467-022-33332-7 [paper, data]

CRISPR/Cas9-mediated excision of ALS/FTD-causing hexanucleotide repeat expansion in C9ORF72 rescues major disease mechanisms in vivo and in vitro.

Journal: Nature communications

Status: data only, 2 datasets cited

[41070] doi:10.1038/s41467-022-34005-1 [paper, repository]

Single cell transcriptomic profiling of a neuron-astrocyte assembloid tauopathy model.

Journal: Nature communications

Authors' code: satijalab/Seurat (other), Zenodo 7102480 (other-open), christinelab/asteroid1_final (MIT)

Status: code verified, 142 files readable, 19 matches

[41071] doi:10.1038/s41531-022-00405-9 [paper]

Neuromelanin and T₂*-MRI for the assessment of genetically at-risk, prodromal, and symptomatic Parkinson's disease.

Journal: NPJ Parkinson's disease

Status: code on request

[41072] doi:10.1038/s41598-022-21491-y [paper, repository]

On the limits of graph neural networks for the early diagnosis of Alzheimer's disease.

Journal: Scientific reports

Authors' code: laurahdezlorenzo/graph_genetics (MIT)

Status: code verified, 26 files readable, 15 matches

[41073] doi:10.1101/2022.10.17.512024 [paper, data]

Bayesian multilevel hidden Markov models identify stable state dynamics in longitudinal recordings from macaque primary motor cortex

Journal: bioRxiv (preprint)

Status: data only, 2 datasets cited

[41074] doi:10.1111/desc.13328 [paper, repository]

Longitudinal investigation of executive function development employing task-based, teacher reports, and fNIRS multimethodology in 4- to 5-year-old children.

Journal: Developmental science

Authors' code: OSF nxc2b (no license)

Status: code verified, 6 files readable

[41075] doi:10.1140/epjs/s11734-022-00696-2 [paper]

Complexity analysis of heartbeat-related signals in brain MRI time series as a potential biomarker for ageing and cognitive performance.

Journal: The European physical journal. Special topics

Status: code on request

[41076] doi:10.1155/2022/5019752 [paper, data]

Kynurenine Pathway Metabolites in the Blood and Cerebrospinal Fluid Are Associated with Human Aging.

Journal: Oxidative medicine and cellular longevity

Status: data only, 1 dataset cited

[41077] doi:10.1186/s13195-022-01096-3 [paper, data]

Gossypetin ameliorates 5xFAD spatial learning and memory through enhanced phagocytosis against Aβ.

Journal: Alzheimer's research & therapy

Status: data only, 4 datasets cited

[41078] doi:10.1371/journal.pbio.3001837 [paper, repository]

The rearing environment persistently modulates mouse phenotypes from the molecular to the behavioural level.

Journal: PLoS biology

Authors' code: MWSchmid/Jaric-et-al.-2022 (no license), figshare 21088642 (CC-BY-4.0)

Status: code verified, 35 files readable, 6 matches

[41079] doi:10.3389/fimmu.2022.1018942 [paper, data]

Establishment and validation of a novel prognostic model for lower-grade glioma based on senescence-related genes.

Journal: Frontiers in immunology

Status: data only, 1 dataset cited

[41080] doi:10.3389/fncir.2022.753496 [paper, repository]

Reconstructing neural circuits using multiresolution correlated light and electron microscopy.

Journal: Frontiers in neural circuits

Authors' code: MorganLabShare/mrCLEM2021 (no license), MorganLabShare/WaferMapper (no license)

Status: code verified, 439 files readable, 1 match

[41081] doi:10.3389/fnmol.2022.949231 [paper, data]

Choroid plexus epithelium and its role in neurological diseases.

Journal: Frontiers in molecular neuroscience

Status: data only, 3 datasets cited

[41082] doi:10.3389/fphar.2022.1011608 [paper, repository]

Action mechanism of hypoglycemic principle 9-(R)-HODE isolated from cortex lycii based on a metabolomics approach.

Journal: Frontiers in pharmacology

Authors' code: torognes/vsearch (GPL-3.0)

Status: code verified, 162 files readable

[41083] doi:10.3390/bioengineering9100591 [paper, repository]

Modified MRI Anonymization (De-Facing) for Improved MEG Coregistration.

Journal: Bioengineering (Basel, Switzerland)

Authors' code: rbruna/de-facing (no license), rbruna/MRI-anonymization-for-MEG-coregistration (GPL-3.0)

Status: code verified, 20 files readable, 4 matches

[41084] doi:10.3390/cells11203315 [paper, repository]

Gene Enrichment Analysis of Astrocyte Subtypes in Psychiatric Disorders and Psychotropic Medication Datasets.

Journal: Cells

Authors' code: CogDisResLab/drugfindR (GPL-3.0)

Status: code verified, 35 files readable, 2 matches

[41085] doi:10.3390/s22208077 [paper, data]

Brain Age Prediction: A Comparison between Machine Learning Models Using Brain Morphometric Data.

Journal: Sensors (Basel, Switzerland)

Status: data only, 1 dataset cited

[41086] doi:10.36660/abc.20220143 [paper, data]

Septal Ablation with Radiofrequency and the Use of New Technologies in Patients with Hypertrophic Cardiomyopathy in an Electrophysiology LaboratoryReply.

Journal: Arquivos brasileiros de cardiologia

Status: data only, 1 dataset cited

Thursday, 20 October 2022 (20 papers)

[41087] doi:10.1002/hbm.26121 [paper]

Both noise-floor and tissue compartment difference in diffusivity contribute to FA dependence on b-value in diffusion MRI.

Journal: Human brain mapping

Status: code on request

[41088] doi:10.1007/s10571-022-01296-3 [paper, data]

Neuroprotective Effect of miR-483-5p Against Cardiac Arrest-Induced Mitochondrial Dysfunction Mediated Through the TNFSF8/AMPK/JNK Signaling Pathway.

Journal: Cellular and molecular neurobiology

Status: data only, 1 dataset cited

[41089] doi:10.1016/j.isci.2022.105407 [paper]

Citrate shuttling in astrocytes is required for processing cocaine-induced neuron-derived excess peroxidated fatty acids.

Journal: iScience

Status: code on request

[41090] doi:10.1016/j.isci.2022.105422 [paper]

Association of low meal frequency with decreased <i>in vivo</i> Alzheimer's pathology.

Journal: iScience

Status: code on request

[41091] doi:10.1016/j.jbc.2022.102621 [paper, repository]

A lysine residue from an extracellular turret switches the ion preference in a Cav3 T-Type channel from calcium to sodium ions.

Journal: The Journal of biological chemistry

Authors' code: deepmind/alphafold (Apache-2.0)

Status: code verified, 101 files readable

[41092] doi:10.1016/j.neuroimage.2022.119699 [paper, repository]

Accommodating site variation in neuroimaging data using normative and hierarchical Bayesian models.

Journal: NeuroImage

Authors' code: likeajumprope/Bayesian_normative_models (CC0-1.0)

Status: code verified, 5 files readable

[41093] doi:10.1016/j.nicl.2022.103243 [paper, repository]

The role of the hippocampus in statistical learning and language recovery in persons with post stroke aphasia.

Journal: NeuroImage. Clinical

Authors' code: kschevenels/pwasl (CC-BY-4.0)

Status: code verified, 18 files readable, 8 matches

[41094] doi:10.1016/j.ynirp.2022.100142 [paper, repository]

Empathy and resting-state functional connectivity in children.

Journal: Neuroimage. Reports

Authors' code: HALFpipe/HALFpipe (GPL-3.0)

Status: code verified, 462 files readable, 5 matches

[41095] doi:10.1038/s41467-022-34039-5 [paper, repository]

Hemisphere-specific spatial representation by hippocampal granule cells.

Journal: Nature communications

Authors' code: Zenodo 5410473 (CC-BY-4.0)

Status: code verified, 20 files readable, 8 matches

[41096] doi:10.1038/s41551-022-00945-8 [paper]

Closed-loop optogenetic control of the dynamics of neural activity in non-human primates.

Journal: Nature biomedical engineering

Status: code on request

[41097] doi:10.1038/s41593-022-01161-y [paper, repository]

Modeling gene × environment interactions in PTSD using human neurons reveals diagnosis-specific glucocorticoid-induced gene expression.

Journal: Nature neuroscience

Authors' code: BreenMS (no license)

Status: code found, still to be checked

[41098] doi:10.1038/s41598-022-21607-4 [paper, repository]

Determinable and interpretable network representation for link prediction.

Journal: Scientific reports

Authors' code: pitteryue/AIProbS (MIT)

Status: code verified, 7 files readable, 2 matches

[41099] doi:10.1038/s41598-022-21742-y [paper, repository]

Comparison of fractal and grid electrodes for studying the effects of spatial confinement on dissociated retinal neuronal and glial behavior.

Journal: Scientific reports

Authors' code: figshare 20044022 (CC-BY-4.0)

Status: code verified, 28 files readable, 1 match

[41100] doi:10.1038/s42003-022-04016-1 [paper]

Bipolar cell targeted optogenetic gene therapy restores parallel retinal signaling and high-level vision in the degenerated retina.

Journal: Communications biology

Status: code on request

[41101] doi:10.1038/s42255-022-00657-y [paper, repository]

HypoMap-a unified single-cell gene expression atlas of the murine hypothalamus.

Journal: Nature metabolism

Authors' code: KChen-lab/stratified-tests-for-seurat (GPL-3.0), lsteuernagel/mapscvi (other), kassambara/ggpubr (no license), lsteuernagel/hypoMap_paper (no license), lsteuernagel/scIntegration (no license), lsteuernagel/scHarmonization (no license), lsteuernagel/scUtils (other), lsteuernagel/scCoco (other)

Status: code verified, 356 files readable, 34 matches

[41102] doi:10.1049/htl2.12037 [paper, repository]

Alzheimer's disease classification using cluster-based labelling for graph neural network on heterogeneous data.

Journal: Healthcare technology letters

Authors' code: mac-n/Clustering-GNN (MIT)

Status: code verified, 8 files readable, 5 matches

[41103] doi:10.3389/fimmu.2022.1025286 [paper]

Comprehensive characterization of TNFSF14/LIGHT with implications in prognosis and immunotherapy of human gliomas.

Journal: Frontiers in immunology

Status: data only

[41104] doi:10.3390/biomedicines10102647 [paper, data]

The Transcriptional Regulator &lt;i&gt;Prdm1&lt;/i&gt; Is Essential for the Early Development of the Sensory Whisker Follicle and Is Linked to the Beta-Catenin First Dermal Signal.

Journal: Biomedicines

Status: data only, 1 dataset cited

[41105] doi:10.3390/brainsci12101413 [paper, repository]

Resting-State Functional MRI Adaptation with Attention Graph Convolution Network for Brain Disorder Identification.

Journal: Brain sciences

Authors' code: jindongwang/transferlearning (MIT)

Status: code verified, 337 files readable

[41106] doi:10.7554/elife.76063 [paper, data]

scRNA-sequencing reveals subtype-specific transcriptomic perturbations in DRG neurons of &lt;i&gt;Pirt&lt;sup&gt;EGFPf&lt;/sup&gt;&lt;/i&gt; mice in neuropathic pain condition.

Journal: eLife

Status: data only, 1 dataset cited

Wednesday, 19 October 2022 (17 papers)

[41107] doi:10.1002/hbm.26118 [paper, repository]

Mapping Interictal activity in epilepsy using a hidden Markov model: A magnetoencephalography study.

Journal: Human brain mapping

Authors' code: ZSeedat/HMM_epilepsy (GPL-3.0)

Status: code verified, 5 files readable, 4 matches

[41108] doi:10.1002/jnr.25138 [paper, data]

Arithmetic in the signing brain: Differences and similarities in arithmetic processing between deaf signers and hearing non-signers.

Journal: Journal of neuroscience research

Status: data only, 1 dataset cited

[41109] doi:10.1016/j.neulet.2022.136922 [paper, data]

Effects of long-term COVID-19 confinement and music stimulation on mental state and brain activity of young people.

Journal: Neuroscience letters

Status: data only, 1 dataset cited

[41110] doi:10.1038/s41467-022-33967-6 [paper, repository]

Immature olfactory sensory neurons provide behaviourally relevant sensory input to the olfactory bulb.

Journal: Nature communications

Authors' code: Zenodo 7013674 (other-open), Zenodo 6993495 (other-open), janeswh/nwb_current_analysis (no license), ccheethamlab/cheethamlab (MIT)

Status: code verified, 36 files readable, 2 matches

[41111] doi:10.1038/s41467-022-34054-6 [paper, data]

Reduced alcohol preference and intake after fecal transplant in patients with alcohol use disorder is transmissible to germ-free mice.

Journal: Nature communications

Status: data only, 2 datasets cited

[41112] doi:10.1038/s41598-022-17601-5 [paper]

Reconstruction of time-shifted hemodynamic response.

Journal: Scientific reports

Status: code on request

[41113] doi:10.1038/s41598-022-17780-1 [paper, data]

Intrinsic connectivity within the affective salience network moderates adolescent susceptibility to negative and positive peer norms.

Journal: Scientific reports

Status: data only, 1 dataset cited

[41114] doi:10.1098/rsos.220797 [paper, repository]

Age, but not hand preference, is related to personality traits in common marmosets (<i>Callithrix jacchus</i>).

Journal: Royal Society open science

Authors' code: doi:10.6084/m9.figshare.c.6249011 (no license)

Status: code found, still to be checked

[41115] doi:10.1098/rsos.220972 [paper, repository]

Social encounters produce different autonomic response between dominants and subordinates in crows.

Journal: Royal Society open science

Authors' code: doi:10.6084/m9.figshare.c.6250791 (no license)

Status: code found, still to be checked

[41116] doi:10.1126/sciadv.abq2022 [paper, repository]

Concurrent mapping of brain ontogeny and phylogeny within a common space: Standardized tractography and applications.

Journal: Science advances

Authors' code: ecr05/dHCP_template_alignment (MIT), Zenodo 7014568 (other-open), spmic-uon/ontogeny_phylogeny_mapping (no license)

Status: code verified, 10 files readable, 6 matches

[41117] doi:10.3389/fcell.2022.1007641 [paper, data]

Pathological implications of metabolic reprogramming and its therapeutic potential in medulloblastoma.

Journal: Frontiers in cell and developmental biology

Status: data only, 8 datasets cited

[41118] doi:10.3389/fcell.2022.1010232 [paper, repository]

Mitochondrial dynamics involves molecular and mechanical events in motility, fusion and fission.

Journal: Frontiers in cell and developmental biology

Authors' code: StuartLab/MiNA (GPL-3.0), vianamp/MitoGraph (GPL-2.0), kandelj/MitoSPT (no license)

Status: code verified, 30 files readable

[41119] doi:10.3389/fimmu.2022.997786 [paper, data]

Microglia morphophysiological diversity and its implications for the CNS.

Journal: Frontiers in immunology

Status: data only, 1 dataset cited

[41120] doi:10.3389/fphar.2022.1024955 [paper, data]

The therapeutic potential of triptolide and celastrol in neurological diseases.

Journal: Frontiers in pharmacology

Status: data only, 5 datasets cited

[41121] doi:10.3389/fphar.2022.862324 [paper, data]

Platelet derived growth factor promotes the recovery of traumatic brain injury by inhibiting endoplasmic reticulum stress and autophagy-mediated pyroptosis.

Journal: Frontiers in pharmacology

Status: data only, 1 dataset cited

[41122] doi:10.3389/fphys.2022.855222 [paper, data]

Instrumented strength assessment in typically developing children and children with a neural or neuromuscular disorder: A reliability, validity and responsiveness study.

Journal: Frontiers in physiology

Status: data only, 1 dataset cited

[41123] doi:10.3758/s13414-022-02592-2 [paper, repository]

Testing beat perception without sensory cues to the beat: the Beat-Drop Alignment Test (BDAT).

Journal: Attention, perception & psychophysics

Authors' code: klausfrieler/BDT (other)

Status: code verified, 23 files readable, 1 match

Tuesday, 18 October 2022 (12 papers)

[41124] doi:10.1002/ana.26514 [paper, data]

Regional Precuneus Cortical Hyperexcitability in Alzheimer's Disease Patients.

Journal: Annals of neurology

Status: data only, 1 dataset cited

[41125] doi:10.1016/j.neuron.2022.09.035 [paper]

Different priming states of synaptic vesicles underlie distinct release probabilities at hippocampal excitatory synapses.

Journal: Neuron

Status: code on request

[41126] doi:10.1038/s41467-022-33161-8 [paper, repository]

Perception and memory have distinct spatial tuning properties in human visual cortex.

Journal: Nature communications

Authors' code: sfavila/Favila_NatComm_2022 (BSD-3-Clause)

Status: code verified, 20 files readable, 8 matches

[41127] doi:10.1038/s41531-022-00400-0 [paper, repository]

Druggable transcriptomic pathways revealed in Parkinson's patient-derived midbrain neurons.

Journal: NPJ Parkinson's disease

Authors' code: bardylab/RNAseq_iPSC_PD (no license)

Status: code verified, 14 files readable, 5 matches

[41128] doi:10.1073/pnas.2207912119 [paper, repository]

Multiple forms of working memory emerge from synapse-astrocyte interactions in a neuron-glia network model.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: depitta-lab/eig-classes-pnas-2022 (GPL-3.0)

Status: code verified, 3 files readable

[41129] doi:10.1073/pnas.2210122119 [paper, data]

Loss of <i>Rai1</i> enhances hippocampal excitability and epileptogenesis in mouse models of Smith-Magenis syndrome.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 1 dataset cited

[41130] doi:10.1073/pnas.2214638119 [paper, repository]

Temporal scaling of human scalp-recorded potentials.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: chassall/temporalscaling (MIT), CCNHuntLab/temporalscaling (MIT)

Status: code verified, 148 files readable, 7 matches

[41131] doi:10.1085/jgp.202213098 [paper]

Lack of evidence for participation of TMEM150C in sensory mechanotransduction.

Journal: The Journal of general physiology

Status: code on request

[41132] doi:10.1111/ejn.15843 [paper, data]

The recruitment of indirect waves within primary motor cortex during motor imagery: A directional transcranial magnetic stimulation study.

Journal: The European journal of neuroscience

Status: data only, 1 dataset cited

[41133] doi:10.1371/journal.pone.0276107 [paper, data]

Selection of single domain anti-transferrin receptor antibodies for blood-brain barrier transcytosis using a neurotensin based assay and histological assessment of target engagement in a mouse model of Alzheimer's related amyloid-beta pathology.

Journal: PloS one

Status: data only, 1 dataset cited

[41134] doi:10.3389/fpsyt.2022.938694 [paper, repository]

Toward biophysical markers of depression vulnerability.

Journal: Frontiers in psychiatry

Authors' code: pinotsislab/erp-feature-extraction-and-classification (no license)

Status: code verified, 13 files readable, 7 matches

[41135] doi:10.3390/ijerph192013471 [paper, repository]

Pharmacophore Modeling Using Machine Learning for Screening the Blood-Brain Barrier Permeation of Xenobiotics.

Journal: International journal of environmental research and public health

Authors' code: Crispae/Pharmacophore-modeling-using-machine-learning-for-screening-Blood-Brain-Barrier-permeation-of-xenobi (no license)

Status: code verified, 30 files readable, 7 matches

Monday, 17 October 2022 (29 papers)

[41136] doi:10.1016/j.dcn.2022.101163 [paper, data]

The automated preprocessing pipe-line for the estimation of scale-wise entropy from EEG data (APPLESEED): Development and validation for use in pediatric populations.

Journal: Developmental cognitive neuroscience

Status: data only, 2 datasets cited

[41137] doi:10.1016/j.dcn.2022.101164 [paper, repository]

Socioeconomic resources are associated with distributed alterations of the brain's intrinsic functional architecture in youth.

Journal: Developmental cognitive neuroscience

Authors' code: SripadaLab/ABCD_Resting_Socioeconomic_Resources (GPL-3.0)

Status: code verified, 17 files readable, 7 matches

[41138] doi:10.1016/j.isci.2022.105383 [paper]

Targeting <i>PTEN</i> but not <i>SOCS3</i> resists an age-dependent decline in promoting axon sprouting.

Journal: iScience

Status: code on request

[41139] doi:10.1016/j.nicl.2022.103235 [paper, repository]

Medial temporal lobe and obstructive sleep apnea: Effect of sex, age, cognitive status and free-water.

Journal: NeuroImage. Clinical

Authors' code: scilus/freewater_flow (MIT)

Status: empty repository, 2 files readable

[41140] doi:10.1038/s41380-022-01822-1 [paper, data]

Cntnap2-dependent molecular networks in autism spectrum disorder revealed through an integrative multi-omics analysis.

Journal: Molecular psychiatry

Status: data only, 1 dataset cited

[41141] doi:10.1038/s41467-022-33565-6 [paper, repository]

Vesicular release probability sets the strength of individual Schaffer collateral synapses.

Journal: Nature communications

Authors' code: toertner/optical-quantal-analysis (no license), toertner/iGluSnFR-simulation (GPL-3.0)

Status: code verified, 9 files readable, 2 matches

[41142] doi:10.1038/s41467-022-33699-7 [paper]

Two-dimensional materials-based probabilistic synapses and reconfigurable neurons for measuring inference uncertainty using Bayesian neural networks.

Journal: Nature communications

Status: code on request

[41143] doi:10.1038/s41592-022-01634-9 [paper, repository]

Estimation of skeletal kinematics in freely moving rodents.

Journal: Nature methods

Authors' code: bbo-lab/ACM-dlcdetect (LGPL-2.1), bbo-lab/ACM (LGPL-2.1), Zenodo 6773477 (lgpl-3.0-or-later)

Status: code verified, 112 files readable, 15 matches

[41144] doi:10.1038/s41597-022-01694-8 [paper, data]

Movement-related artefacts (MR-ART) dataset of matched motion-corrupted and clean structural MRI brain scans.

Journal: Scientific data

Status: data only, 1 dataset cited

[41145] doi:10.1038/s41598-022-20324-2 [paper]

CSF GAP-43 as a biomarker of synaptic dysfunction is associated with tau pathology in Alzheimer's disease.

Journal: Scientific reports

Status: code on request

[41146] doi:10.1038/s41598-022-20674-x [paper, repository]

Generalizable deep learning model for early Alzheimer's disease detection from structural MRIs.

Journal: Scientific reports

Authors' code: NYUMedML/CNN_design_for_AD (AGPL-3.0)

Status: code verified, 21 files readable, 3 matches

[41147] doi:10.1038/s41598-022-22323-9 [paper, repository]

Stacking ensemble learning model to predict 6-month mortality in ischemic stroke patients.

Journal: Scientific reports

Authors' code: lhwangbo/m-ist (Apache-2.0)

Status: code verified, 6 files readable, 4 matches

[41148] doi:10.1038/s42003-022-04052-x [paper, repository]

Reconstruction of ovine axonal cytoarchitecture enables more accurate models of brain biomechanics.

Journal: Communications biology

Authors' code: Zenodo 4772440 (CC-BY-NC-4.0)

Status: code verified

[41149] doi:10.1073/pnas.2123476119 [paper, data]

Deterministic programming of human pluripotent stem cells into microglia facilitates studying their role in health and disease.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 2 datasets cited

[41150] doi:10.1073/pnas.2200257119 [paper, data]

Neural event segmentation of continuous experience in human infants.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 1 dataset cited

[41151] doi:10.1073/pnas.2200621119 [paper, repository]

Paradoxical self-sustained dynamics emerge from orchestrated excitatory and inhibitory homeostatic plasticity rules.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: saraysoldado/Paradoxical2022 (MIT), SMDynamicsLab/Paradoxical2022 (GPL-3.0)

Status: code verified, 45 files readable

[41152] doi:10.1073/pnas.2200800119 [paper, repository]

Neural representational geometry underlies few-shot concept learning.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: bsorsch/geometry-fewshot-learning (no license)

Status: code verified, 14 files readable, 1 match

[41153] doi:10.1073/pnas.2202394119 [paper, data]

Sleep facilitates spatial memory but not navigation using the Minecraft Memory and Navigation task.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 1 dataset cited

[41154] doi:10.1073/pnas.2203584119 [paper, repository]

An insect brain organizes numbers on a left-to-right mental number line.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: figshare 19249133 (CC-BY-4.0)

Status: code verified, 6 files readable

[41155] doi:10.1073/pnas.2208081119 [paper, repository]

Differential interactions of resting, activated, and desensitized states of the α7 nicotinic acetylcholine receptor with lipidic modulators.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: Zenodo 6998046 (CC-BY-4.0)

Status: code verified, 1 file readable

[41156] doi:10.1186/s12874-022-01712-8 [paper]

Group-level comparison of brain connectivity networks.

Journal: BMC medical research methodology

Status: code on request

[41157] doi:10.1186/s13024-022-00572-6 [paper, data]

Tau interactome and RNA binding proteins in neurodegenerative diseases.

Journal: Molecular neurodegeneration

Status: data only, 1 dataset cited

[41158] doi:10.1186/s40001-022-00838-1 [paper, data]

Autism-like behaviors regulated by the serotonin receptor 5-HT2B in the dorsal fan-shaped body neurons of Drosophila melanogaster.

Journal: European journal of medical research

Status: data only, 1 dataset cited

[41159] doi:10.1186/s40035-022-00318-w [paper, data]

Intestine-derived α-synuclein initiates and aggravates pathogenesis of Parkinson's disease in Drosophila.

Journal: Translational neurodegeneration

Status: data only, 2 datasets cited

[41160] doi:10.1371/journal.pcbi.1010566 [paper, repository]

Hippocampal and medial prefrontal cortices encode structural task representations following progressive and interleaved training schedules.

Journal: PLoS computational biology

Authors' code: OSF tvk43 (no license)

Status: code verified, 22 files readable, 4 matches

[41161] doi:10.3389/fneur.2022.990802 [paper, data]

Slower progression of amyotrophic lateral sclerosis with external application of a Chinese herbal plaster-The randomized, placebo-controlled triple-blinded ALS-CHEPLA trial.

Journal: Frontiers in neurology

Status: data only, 2 datasets cited

[41162] doi:10.3390/biom12101504 [paper, data]

High-Resolution Ribosome Profiling Reveals Gene-Specific Details of UGA Re-Coding in Selenoprotein Biosynthesis.

Journal: Biomolecules

Status: data only, 1 dataset cited

[41163] doi:10.3390/s22207906 [paper, data]

Preliminary Evidence of EEG Connectivity Changes during Self-Objectification of Workers.

Journal: Sensors (Basel, Switzerland)

Status: data only, 1 dataset cited

[41164] doi:10.7554/elife.80445 [paper, repository]

Postsynaptic plasticity of cholinergic synapses underlies the induction and expression of appetitive and familiarity memories in <i>Drosophila</i>.

Journal: eLife

Authors' code: owaldlab/2022_postsynapticplasticity (GPL-3.0)

Status: code verified, 4 files readable

Sunday, 16 October 2022 (2 papers)

[41165] doi:10.3390/diagnostics12102510 [paper, data]

L-Tetrolet Pattern-Based Sleep Stage Classification Model Using Balanced EEG Datasets.

Journal: Diagnostics (Basel, Switzerland)

Status: data only, 1 dataset cited

[41166] doi:10.3390/ijms232012375 [paper, data]

Base and Prime Editing in the Retina-From Preclinical Research toward Human Clinical Trials.

Journal: International journal of molecular sciences

Status: data only, 1 dataset cited

Saturday, 15 October 2022 (9 papers)

[41167] doi:10.1038/s41419-022-05314-6 [paper, repository]

Loss of CASZ1 tumor suppressor linked to oncogenic subversion of neuroblastoma core regulatory circuitry.

Journal: Cell death & disease

Authors' code: homer.salk.edu/homer/ngs (no license), BradnerLab/pipeline (MIT)

Status: code verified, 61 files readable

[41168] doi:10.1038/s41467-022-33685-z [paper, repository]

Detecting the ultra low dimensionality of real networks.

Journal: Nature communications

Authors' code: Zenodo 7079461 (other-open), networkgeometry/detecting-dimensionality (GPL-3.0)

Status: code verified, 24 files readable

[41169] doi:10.1038/s41467-022-33781-0 [paper, data]

Maintenance of neurotransmitter identity by Hox proteins through a homeostatic mechanism.

Journal: Nature communications

Status: data only, 1 dataset cited

[41170] doi:10.1038/s41598-022-21026-5 [paper, repository]

Subcellular partitioning of protein kinase activity revealed by functional kinome profiling.

Journal: Scientific reports

Authors' code: CogDisResLab/KRSA (other)

Status: code verified, 62 files readable, 3 matches

[41171] doi:10.1093/nc/niac014 [paper, data]

Confidence at the limits of human nested cognition.

Journal: Neuroscience of consciousness

Status: data only, 1 dataset cited

[41172] doi:10.1186/s12868-022-00744-6 [paper, data]

Transcriptomes of Clusterin- and S100B-transfected neuronal cells elucidate protective mechanisms against hypoxia and oxidative stress in the hooded seal (Cystophora cristata) brain.

Journal: BMC neuroscience

Status: data only, 2 datasets cited

[41173] doi:10.1186/s13064-022-00166-4 [paper, data]

mRNAs encoding neurodevelopmental regulators have equal N6-methyladenosine stoichiometry in Drosophila neuroblasts and neurons.

Journal: Neural development

Status: data only, 2 datasets cited

[41174] doi:10.3390/brainsci12101394 [paper, data]

Decoding Visual fMRI Stimuli from Human Brain Based on Graph Convolutional Neural Network.

Journal: Brain sciences

Status: data only, 1 dataset cited

[41175] doi:10.3390/ijms232012347 [paper, repository]

Analyses of circRNA Expression throughout the Light-Dark Cycle Reveal a Strong Regulation of <i>Cdr1as</i>, Associated with Light Entrainment in the SCN.

Journal: International journal of molecular sciences

Authors' code: bihealth/circ_circ (no license)

Status: code verified, 3 files readable

Friday, 14 October 2022 (25 papers)

[41176] doi:10.1016/j.dcn.2022.101162 [paper, repository]

Pubertal development underlies optimization of inhibitory control through specialization of ventrolateral prefrontal cortex.

Journal: Developmental cognitive neuroscience

Authors' code: LabNeuroCogDevel/autoeyescore (no license), LabNeuroCogDevel/fmri_processing_scripts (no license)

Status: code verified, 295 files readable, 5 matches

[41177] doi:10.1016/j.esmoop.2022.100595 [paper, data]

Symptom burden, psychological distress, and symptom management status in hospitalized patients with advanced cancer: a multicenter study in China.

Journal: ESMO open

Status: data only, 1 dataset cited

[41178] doi:10.1016/j.isci.2022.105345 [paper, repository]

DeepASmRNA: Reference-free prediction of alternative splicing events with a scalable and interpretable deep learning model.

Journal: iScience

Authors' code: comprna/SUPPA (MIT), PASApipeline/PASApipeline (BSD-3-Clause), Hengfu-Yin/IsoSplitter (LGPL-3.0), CMB-BNU/DeepASmRNA (no license), cmb.bnu.edu.cn/deepasmrna/index.php (no license)

Status: code verified, 345 files readable, 1 match

[41179] doi:10.1016/j.ynstr.2022.100496 [paper, repository]

DiffBrainNet: Differential analyses add new insights into the response to glucocorticoids at the level of genes, networks and brain regions.

Journal: Neurobiology of stress

Authors' code: github.molgen.mpg.de/mpip/diffbrainnet_shinyapp (no license), github.molgen.mpg.de/mpip/diffbrainnet (no license)

Status: code verified

[41180] doi:10.1038/s41398-022-02193-5 [paper, data]

Mapping the genetic architecture of cortical morphology through neuroimaging: progress and perspectives.

Journal: Translational psychiatry

Status: data only, 1 dataset cited

[41181] doi:10.1038/s41467-022-33829-1 [paper, repository]

Genetic map of regional sulcal morphology in the human brain from UK biobank data.

Journal: Nature communications

Authors' code: hub.docker.com/repository/docker (no license)

Status: code verified

[41182] doi:10.1038/s41531-022-00399-4 [paper]

Amplitude and frequency modulation of subthalamic beta oscillations jointly encode the dopaminergic state in Parkinson's disease.

Journal: NPJ Parkinson's disease

Status: code on request

[41183] doi:10.1038/s41598-022-19449-1 [paper]

Brain oscillatory activity in adolescent idiopathic scoliosis.

Journal: Scientific reports

Status: code on request

[41184] doi:10.1038/s41598-022-21388-w [paper, data]

A pro-oxidant combination of resveratrol and copper down-regulates multiple biological hallmarks of ageing and neurodegeneration in mice.

Journal: Scientific reports

Status: data only, 1 dataset cited

[41185] doi:10.1038/s43587-022-00293-x [paper, repository]

Immune system-wide Mendelian randomization and triangulation analyses support autoimmunity as a modifiable component in dementia-causing diseases.

Journal: Nature aging

Authors' code: JVLind/Dementias_and_autoimmunity (no license)

Status: empty repository, 1 file readable

[41186] doi:10.1093/pnasnexus/pgac236 [paper]

Dialogue intervention for youth amidst intractable conflict attenuates neural prejudice response and promotes adults' peacemaking.

Journal: PNAS nexus

Status: code on request

[41187] doi:10.1126/sciadv.adc9340 [paper, repository]

Lateral fenestrations in the extracellular domain of the glycine receptor contribute to the main chloride permeation pathway.

Journal: Science advances

Authors' code: Zenodo 6935496 (other-open), Zenodo 6935478 (other-open), adriencerdan/vestibule-glyr (GPL-3.0), adriencerdan/lateral-tunnels-glyr (GPL-3.0)

Status: code verified, 8 files readable

[41188] doi:10.1161/strokeaha.122.040687 [paper, data]

Network Meta-Analysis of Non-Conventional Therapies for Improving Upper Limb Motor Impairment Poststroke.

Journal: Stroke

Status: data only, 1 dataset cited

[41189] doi:10.1186/s12974-022-02619-3 [paper, repository]

TPM1 mediates inflammation downstream of TREM2 via the PKA/CREB signaling pathway.

Journal: Journal of neuroinflammation

Authors' code: BGI-flexlab/SOAPnuke (GPL-3.0)

Status: code verified, 34 files readable

[41190] doi:10.1371/journal.pone.0276060 [paper, data]

Effects of short-term arm immobilization on motor skill acquisition.

Journal: PloS one

Status: data only, 1 dataset cited

[41191] doi:10.3389/fcell.2022.1023279 [paper]

Silk scaffolding drives self-assembly of functional and mature human brain organoids.

Journal: Frontiers in cell and developmental biology

Status: data only

[41192] doi:10.3389/fneur.2022.981888 [paper, data]

Electrophysiological evidence of subclinical trigeminal dysfunction in patients with COVID-19 and smell impairment: A pilot study.

Journal: Frontiers in neurology

Status: data only, 2 datasets cited

[41193] doi:10.3389/fnint.2022.974177 [paper, repository]

Learning and replaying spatiotemporal sequences: A replication study.

Journal: Frontiers in integrative neuroscience

Authors' code: Zenodo 7046137 (no license), modeldb:257609 (no license)

Status: code verified, 25 files readable, 6 matches

[41194] doi:10.3389/frobt.2022.1007547 [paper, repository]

Towards the Neuroevolution of Low-level artificial general intelligence.

Journal: Frontiers in robotics and AI

Authors' code: SocratesNFR/neat-nagi-python (MIT)

Status: code verified, 36 files readable, 11 matches

[41195] doi:10.3390/ijms232012269 [paper, repository]

Transcription Factors as Important Regulators of Changes in Behavior through Domestication of Gray Rats: Quantitative Data from RNA Sequencing.

Journal: International journal of molecular sciences

Authors' code: ubercomrade/esdeg (MIT)

Status: code verified, 13 files readable, 1 match

[41196] doi:10.3390/ijms232012328 [paper, data]

Glucocorticoid-Regulated Kinase CAMKIγ in the Central Amygdala Controls Anxiety-like Behavior in Mice.

Journal: International journal of molecular sciences

Status: data only, 1 dataset cited

[41197] doi:10.3390/nu14204298 [paper, data]

Targeting Alzheimer's Disease: The Critical Crosstalk between the Liver and Brain.

Journal: Nutrients

Status: data only, 9 datasets cited

[41198] doi:10.3758/s13415-022-01037-5 [paper, data]

Fear memory in humans is consolidated over time independently of sleep.

Journal: Cognitive, affective & behavioral neuroscience

Status: data only, 1 dataset cited

[41199] doi:10.7554/elife.78847 [paper, repository]

Dynamic proteomic and phosphoproteomic atlas of corticostriatal axons in neurodevelopment.

Journal: eLife

Authors' code: KozorovitskiyLaboratory/STRaxon (no license), saezlab/PHONEMeS-ILP (GPL-3.0)

Status: code verified, 114 files readable, 22 matches

[41200] doi:10.7554/elife.79471 [paper, repository]

<i>Disrupted-in-schizophrenia-1</i> is required for normal pyramidal cell-interneuron communication and assembly dynamics in the prefrontal cortex.

Journal: eLife

Authors' code: Zenodo 7115771 (CC-BY-4.0)

Status: code verified

Thursday, 13 October 2022 (28 papers, 16 on this page)

[41201] doi:10.1007/s10803-022-05772-z [paper, repository]

Higher Sensory Sensitivity is Linked to Greater Expansion Amongst Functional Connectivity Gradients.

Journal: Journal of autism and developmental disorders

Authors' code: magdadelrio/SensoryGradients (no license)

Status: code verified, 7 files readable, 8 matches

[41202] doi:10.1016/j.isci.2022.105332 [paper]

Developmental regulation of thalamus-driven pauses in striatal cholinergic interneurons.

Journal: iScience

Status: code on request

[41203] doi:10.1016/j.isci.2022.105355 [paper, repository]

Zn²⁺ inhibits spatial memory and hippocampal place cell representation through high-affinity binding to the NMDA receptor GluN2A subunit.

Journal: iScience

Authors' code: jrclimer/Pass_Index (BSD-2-Clause)

Status: code verified, 15 files readable, 4 matches

[41204] doi:10.1016/j.jmb.2022.167853 [paper, repository]

The Core Complex of the Ca²⁺-Triggered Presynaptic Fusion Machinery.

Journal: Journal of molecular biology

Authors' code: Zenodo 7159049 (other-open), axelbrunger/single_molecule_matlab_scripts (GPL-3.0)

Status: code verified, 38 files readable

[41205] doi:10.1016/j.neuroimage.2022.119670 [paper, repository]

L-DOPA enhances neural direction signals in younger and older adults.

Journal: NeuroImage

Authors' code: koch-means-cook/damson (CC-BY-4.0)

Status: code verified, 97 files readable, 11 matches

[41206] doi:10.1038/s41467-022-33799-4 [paper, data]

Guidance landscapes unveiled by quantitative proteomics to control reinnervation in adult visual system.

Journal: Nature communications

Status: data only, 3 datasets cited

[41207] doi:10.1038/s41597-022-01724-5 [paper, repository]

Brain de novo transcriptome assembly of a toad species showing polymorphic anti-predatory behavior.

Journal: Scientific data

Authors' code: figshare 20319633 (CC-BY-4.0), doi:10.6084/m9.figshare.c.5696179 (no license), figshare 16945270 (CC-BY-4.0), figshare 16945264 (CC-BY-4.0)

Status: code found, still to be checked

[41208] doi:10.1038/s41597-022-01728-1 [paper, repository]

A detailed behavioral, videographic, and neural dataset on object recognition in mice.

Journal: Scientific data

Authors' code: cxrodgers/nwbdandidata2022 (no license), rly/ndx-pose (BSD-3-Clause), cxrodgers/PoseTF (LGPL-3.0), eldar/pose-tensorflow (LGPL-3.0), cxrodgers/whisk (BSD-3-Clause), nclack/whisk (BSD-3-Clause), kkroening/ffmpeg-python (Apache-2.0), glm-tools/pyglmnet (MIT)

Status: code verified, 788 files readable, 4 matches

[41209] doi:10.1038/s41598-022-22179-z [paper, data]

Alzheimer's disease large-scale gene expression portrait identifies exercise as the top theoretical treatment.

Journal: Scientific reports

Status: code on request, 3 datasets cited

[41210] doi:10.1093/braincomms/fcac248 [paper, repository]

Mutant huntingtin messenger RNA forms neuronal nuclear clusters in rodent and human brains.

Journal: Brain communications

Authors' code: socheataly/imagej (no license)

Status: empty repository, 1 file readable

[41211] doi:10.1152/japplphysiol.00758.2021 [paper]

Modulations in motor unit discharge are related to changes in fascicle length during isometric contractions.

Journal: Journal of applied physiology (Bethesda, Md. : 1985)

Status: code on request

[41212] doi:10.1155/2022/6000989 [paper, data]

Entropy-Based Emotion Recognition from Multichannel EEG Signals Using Artificial Neural Network.

Journal: Computational intelligence and neuroscience

Status: data only, 1 dataset cited

[41213] doi:10.1186/s13148-022-01346-z [paper, data]

DNA methylation signatures on vascular differentiation genes are aberrant in vessels of human cerebral arteriovenous malformation nidus.

Journal: Clinical epigenetics

Status: data only, 1 dataset cited

[41214] doi:10.1186/s13195-022-01094-5 [paper, data]

Classification accuracy of blood-based and neurophysiological markers in the differential diagnosis of Alzheimer's disease and frontotemporal lobar degeneration.

Journal: Alzheimer's research & therapy

Status: data only, 2 datasets cited

[41215] doi:10.1212/nxi.0000000000200026 [paper, repository]

Imaging Characteristics of Choroid Plexuses in Presymptomatic Multiple Sclerosis: A Retrospective Study.

Journal: Neurology(R) neuroimmunology & neuroinflammation

Authors' code: UCL/PETPVC (Apache-2.0)

Status: code verified, 20 files readable, 1 match

[41216] doi:10.1371/journal.pone.0275262 [paper, data]

Hand choice is unaffected by high frequency continuous theta burst transcranial magnetic stimulation to the posterior parietal cortex.

Journal: PloS one

Status: data only, 1 dataset cited

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