Every paper, by date: page 185

44,644 papers with a page: 24,189 with their authors' code, 4,955 with code on request, 15,495 with data only. The most recent first, 224 a page. Page 185 of 200: 13 October 2022 to 3 October 2022.

Thursday, 13 October 2022 (28 papers, 12 on this page)

[41217] doi:10.3389/fendo.2022.972033 [paper, data]

Lack of placental neurosteroid alters cortical development and female somatosensory function.

Journal: Frontiers in endocrinology

Status: data only, 3 datasets cited

[41218] doi:10.3389/fmicb.2022.970470 [paper, data]

The effects of gut microbiota colonizing on the porcine hypothalamus revealed by whole transcriptome analysis.

Journal: Frontiers in microbiology

Status: data only, 1 dataset cited

[41219] doi:10.3389/fninf.2022.970372 [paper, data]

Effects of individualized brain anatomies and EEG electrode positions on inferred activity of the primary auditory cortex.

Journal: Frontiers in neuroinformatics

Status: data only, 1 dataset cited

[41220] doi:10.3389/fninf.2022.990859 [paper, repository]

Software tool for visualization of a probabilistic map of the epileptogenic zone from seizure semiologies.

Journal: Frontiers in neuroinformatics

Authors' code: Zenodo 3550830 (other-open), fepegar/highresnet (MIT)

Status: code verified, 38 files readable

[41221] doi:10.3389/fnins.2022.1001544 [paper, repository]

Systems biology analyses reveal enhanced chronic morphine distortion of gut-brain interrelationships in simian human immunodeficiency virus infected rhesus macaques.

Journal: Frontiers in neuroscience

Authors' code: aomalla123/cerbroviz-code (no license)

Status: code verified, 2 files readable

[41222] doi:10.3389/fnins.2022.999720 [paper, repository]

Statistical image properties predict aesthetic ratings in abstract paintings created by neural style transfer.

Journal: Frontiers in neuroscience

Authors' code: nkolkin13/STROTSS (no license)

Status: code verified, 8 files readable

[41223] doi:10.3389/fnmol.2022.977305 [paper, data]

Brain region and gene dosage-differential transcriptomic changes in <i>Shank2</i>-mutant mice.

Journal: Frontiers in molecular neuroscience

Status: data only, 1 dataset cited

[41224] doi:10.3389/fonc.2022.1024567 [paper, data]

<i>In silico</i> characterization of competing endogenous RNA network in glioblastoma multiforme with a systems biology approach.

Journal: Frontiers in oncology

Status: data only, 1 dataset cited

[41225] doi:10.3390/diagnostics12102484 [paper, data]

Parallelistic Convolution Neural Network Approach for Brain Tumor Diagnosis.

Journal: Diagnostics (Basel, Switzerland)

Status: data only, 1 dataset cited

[41226] doi:10.3390/ijms232012242 [paper]

Dietary Selenomethionine Reduce Mercury Tissue Levels and Modulate Methylmercury Induced Proteomic and Transcriptomic Alterations in Hippocampi of Adolescent BALB/c Mice.

Journal: International journal of molecular sciences

Status: data only

[41227] doi:10.7554/elife.78941 [paper, data]

Neuronal temperature perception induces specific defenses that enable <i>C. elegans</i> to cope with the enhanced reactivity of hydrogen peroxide at high temperature.

Journal: eLife

Status: data only, 1 dataset cited

[41228] doi:10.7554/elife.81071 [paper, data]

Postsynaptic burst reactivation of hippocampal neurons enables associative plasticity of temporally discontiguous inputs.

Journal: eLife

Status: data only, 1 dataset cited

Wednesday, 12 October 2022 (23 papers)

[41229] doi:10.1002/alz.12812 [paper, repository]

The role of mitochondrial genome abundance in Alzheimer's disease.

Journal: Alzheimer's & dementia : the journal of the Alzheimer's Association

Authors' code: marcoralab/gatk-mitochondria-pipeline (MIT)

Status: code verified, 8 files readable, 3 matches

[41230] doi:10.1007/s00280-022-04483-7 [paper, data]

An inhibitor of BRD4, GNE987, inhibits the growth of glioblastoma cells by targeting C-Myc and S100A16.

Journal: Cancer chemotherapy and pharmacology

Status: data only, 1 dataset cited

[41231] doi:10.1016/j.bjorl.2022.09.005 [paper, data]

Changes in late-latency auditory evoked potentials after tinnitus suppression using auditory stimulation.

Journal: Brazilian journal of otorhinolaryngology

Status: data only, 1 dataset cited

[41232] doi:10.1016/j.celrep.2022.111573 [paper, data]

SARS-CoV-2 infects neurons and induces neuroinflammation in a non-human primate model of COVID-19.

Journal: Cell reports

Status: code on request, 1 dataset cited

[41233] doi:10.1016/j.devcel.2022.09.011 [paper, data]

Loss of non-motor kinesin KIF26A causes congenital brain malformations via dysregulated neuronal migration and axonal growth as well as apoptosis.

Journal: Developmental cell

Status: data only, 1 dataset cited

[41234] doi:10.1038/s41388-022-02496-3 [paper, data]

Intralesional TLR4 agonist treatment strengthens the organ defense against colonizing cancer cells in the brain.

Journal: Oncogene

Status: code on request, 2 datasets cited

[41235] doi:10.1038/s41467-022-33237-5 [paper, repository]

Persistent activity in human parietal cortex mediates perceptual choice repetition bias.

Journal: Nature communications

Authors' code: Zenodo 6949711 (other-open), anne-urai/2022_urai_choicehistory_meg (MIT)

Status: code verified, 216 files readable, 30 matches

[41236] doi:10.1038/s41467-022-33536-x [paper, repository]

A consensus statement on detection of hippocampal sharp wave ripples and differentiation from other fast oscillations.

Journal: Nature communications

Authors' code: buzsakilab/buzcode (GPL-3.0)

Status: code verified, 2,000 files readable, 3 matches

[41237] doi:10.1038/s41586-022-05277-w [paper, repository]

Maturation and circuit integration of transplanted human cortical organoids.

Journal: Nature

Authors' code: kkelley85/Transplant_organoid_snRNAseq (no license)

Status: code verified, 12 files readable, 9 matches

[41238] doi:10.1038/s41597-022-01695-7 [paper, repository]

An analysis-ready and quality controlled resource for pediatric brain white-matter research.

Journal: Scientific data

Authors' code: richford/hbn-pod2-qc (BSD-3-Clause), richford/fibr (Apache-2.0), Zenodo 7047788 (other-open), Zenodo 7047785 (other-open), Zenodo 7048954 (other-open), Zenodo 5949269 (BSD-3-Clause), Zenodo 6462128 (BSD-3-Clause), OSF 8cy32 (no license)

Status: code verified, 127 files readable, 40 matches

[41239] doi:10.1038/s42003-022-04048-7 [paper, repository]

A ventral stream-prefrontal cortex processing cascade enables working memory gating dynamics.

Journal: Communications biology

Authors' code: OSF jw6v2 (no license)

Status: code verified, 9 files readable

[41240] doi:10.1073/pnas.2213080119 [paper, repository]

Adaptive processing and perceptual learning in visual cortical areas V1 and V4.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: Zenodo 11529911 (MIT), Zenodo 11529912 (MIT)

Status: code verified

[41241] doi:10.1098/rspb.2022.1220 [paper, repository]

Distance estimation in the goldfish (<i>Carassius auratus</i>).

Journal: Proceedings. Biological sciences

Authors' code: doi:10.5061/dryad.0k6djhb2s (no license), Zenodo 6705614 (MIT), Zenodo 6705615 (MIT)

Status: code verified, 2 files readable

[41242] doi:10.1126/sciadv.abn8367 [paper, repository]

Upper cortical layer-driven network impairment in schizophrenia.

Journal: Science advances

Authors' code: khodosevichlab/Schizophrenia20 (no license), Zenodo 6583332 (other-open)

Status: code verified, 12 files readable, 9 matches

[41243] doi:10.1186/s13041-022-00963-2 [paper, data]

Transcriptomic profiling of sporadic Alzheimer's disease patients.

Journal: Molecular brain

Status: data only, 1 dataset cited

[41244] doi:10.1371/journal.pone.0274872 [paper, data]

Investigation of the association between the antibody responses to neurotropic viruses and dementia outcomes in the UK Biobank.

Journal: PloS one

Status: data only, 3 datasets cited

[41245] doi:10.3389/fimmu.2022.968520 [paper]

Microglial exosomal miR-466i-5p induces brain injury <i>via</i> promoting hippocampal neuron apoptosis in heatstroke.

Journal: Frontiers in immunology

Status: data only

[41246] doi:10.3389/fnhum.2022.973298 [paper, repository]

Efficacy of twice-daily high-frequency repetitive transcranial magnetic stimulation on associative memory.

Journal: Frontiers in human neuroscience

Authors' code: jigongjun/Neuroimaging-and-Neuromodulation (no license)

Status: code verified, 157 files readable, 1 match

[41247] doi:10.3389/fnhum.2022.974094 [paper, repository]

Aberrant brain functional networks in type 2 diabetes mellitus: A graph theoretical and support-vector machine approach.

Journal: Frontiers in human neuroscience

Authors' code: thomasyeolab/cbig (MIT)

Status: code verified, 2,000 files readable, 1 match

[41248] doi:10.3389/fphys.2022.912947 [paper, repository]

Rule-based definition of muscle bundles in patient-specific models of the left atrium.

Journal: Frontiers in physiology

Authors' code: rossisimone/beatit (GPL-3.0), KIT-IBT/RESILIENT (GPL-3.0)

Status: code verified, 206 files readable, 8 matches

[41249] doi:10.3390/life12101586 [paper, repository]

A Causal Analysis of the Effect of Age and Sex Differences on Brain Atrophy in the Elderly Brain.

Journal: Life (Basel, Switzerland)

Authors' code: grjd/causalityagingbrain (no license)

Status: code verified, 2 files readable

[41250] doi:10.3390/nu14204254 [paper, data]

Adherence to the EAT-Lancet Diet: Unintended Consequences for the Brain?

Journal: Nutrients

Status: data only, 1 dataset cited

[41251] doi:10.7554/elife.76479 [paper, repository]

Transversal functional connectivity and scene-specific processing in the human entorhinal-hippocampal circuitry.

Journal: eLife

Authors' code: OSF 9v3qp (no license)

Status: code verified

Tuesday, 11 October 2022 (19 papers)

[41252] doi:10.1002/hbm.26102 [paper, data]

Combining sodium MRI, proton MR spectroscopic imaging, and intracerebral EEG in epilepsy.

Journal: Human brain mapping

Status: data only, 2 datasets cited

[41253] doi:10.1002/hbm.26104 [paper, repository]

Identification of central amygdala and trigeminal motor nucleus connectivity in humans: An ultra-high field diffusion MRI study.

Journal: Human brain mapping

Authors' code: ksubramz/gradunwarp (MIT)

Status: code verified, 15 files readable

[41254] doi:10.1002/mrm.29478 [paper, repository]

Tensor denoising of multidimensional MRI data.

Journal: Magnetic resonance in medicine

Authors' code: sunenj/MP-PCA-Denoising (GPL-2.0), sunenj (no license)

Status: code verified, 5 files readable, 1 match

[41255] doi:10.1038/s41398-022-02211-6 [paper, repository]

Working memory updating in individuals with bipolar and unipolar depression: fMRI study.

Journal: Translational psychiatry

Authors' code: Zenodo 2653784 (other-open), nipy/heudiconv (Apache-2.0)

Status: code verified, 104 files readable

[41256] doi:10.1038/s41419-022-05290-x [paper, data]

Caspase-1 inhibition improves cognition without significantly altering amyloid and inflammation in aged Alzheimer disease mice.

Journal: Cell death & disease

Status: data only, 1 dataset cited

[41257] doi:10.1038/s41598-022-21067-w [paper, repository]

The influence of self-reported history of mild traumatic brain injury on cognitive performance.

Journal: Scientific reports

Authors' code: OSF 4v59y (no license)

Status: code verified, 18 files readable, 9 matches

[41258] doi:10.1038/s42003-022-04033-0 [paper, repository]

Neurocognitive analyses reveal that video game players exhibit enhanced implicit temporal processing.

Journal: Communications biology

Authors' code: OSF 54pj7 (no license)

Status: code verified, 1 file readable

[41259] doi:10.1038/s42003-022-04039-8 [paper, repository]

Functional orderly topography of brain networks associated with gene expression heterogeneity.

Journal: Communications biology

Authors' code: angelnudt/gene-expression-heterogeneity-analysis (no license)

Status: code verified, 11 files readable

[41260] doi:10.1073/pnas.2204135119 [paper, data]

Prenatal exposure to maternal social disadvantage and psychosocial stress and neonatal white matter connectivity at birth.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 1 dataset cited

[41261] doi:10.1080/19585969.2022.2128697 [paper, data]

Cardiac vagal activity is associated with gut-microbiome patterns in women-An exploratory pilot study.

Journal: Dialogues in clinical neuroscience

Status: data only, 1 dataset cited

[41262] doi:10.1111/ejn.15829 [paper, repository]

Robust estimation of 1/f activity improves oscillatory burst detection.

Journal: The European journal of neuroscience

Authors' code: neurofractal/fBOSC (GPL-3.0), neurofractal/fBOSC_validation (GPL-3.0)

Status: code verified, 101 files readable, 9 matches

[41263] doi:10.1186/s12888-022-04285-4 [paper, data]

Gray matter reduction in bilateral insula mediating adverse psychiatric effects of body mass index in schizophrenia.

Journal: BMC psychiatry

Status: data only, 1 dataset cited

[41264] doi:10.1186/s12935-022-02731-7 [paper, data]

Etomoxir, a carnitine palmitoyltransferase 1 inhibitor, combined with temozolomide reduces stemness and invasiveness in patient-derived glioblastoma tumorspheres.

Journal: Cancer cell international

Status: data only, 2 datasets cited

[41265] doi:10.1186/s40478-022-01444-2 [paper, data]

Tau seeding in cases of multiple sclerosis.

Journal: Acta neuropathologica communications

Status: data only, 1 dataset cited

[41266] doi:10.1371/journal.pcbi.1010589 [paper, repository]

Correcting the hebbian mistake: Toward a fully error-driven hippocampus.

Journal: PLoS computational biology

Authors' code: ccnlab/hip-edl (BSD-3-Clause), emer/leabra (BSD-3-Clause)

Status: code verified, 76 files readable, 5 matches

[41267] doi:10.3389/fgene.2022.867872 [paper, data]

Delta-catenin attenuates medulloblastoma cell invasion by targeting EMT pathway.

Journal: Frontiers in genetics

Status: data only, 1 dataset cited

[41268] doi:10.3389/fnhum.2022.983137 [paper, repository]

Does mental rotation emulate motor processes? An electrophysiological study of objects and body parts.

Journal: Frontiers in human neuroscience

Authors' code: Zenodo 1164038 (GPL-2.0)

Status: code verified

[41269] doi:10.3389/fninf.2022.1043732 [paper, repository]

Editorial: Neuroinformatics of large-scale brain modelling.

Journal: Frontiers in neuroinformatics

Authors' code: INM-6/nnmt (GPL-3.0)

Status: code verified, 96 files readable

[41270] doi:10.3390/s22207715 [paper, data]

An Adaptive Task-Related Component Analysis Method for SSVEP Recognition.

Journal: Sensors (Basel, Switzerland)

Status: data only, 1 dataset cited

Monday, 10 October 2022 (16 papers)

[41271] doi:10.1002/hbm.26096 [paper, repository]

Individual functional parcellation revealed compensation of dynamic limbic network organization in healthy ageing.

Journal: Human brain mapping

Authors' code: Tiantian-LIU-BIT/Individual_Net_clustering (no license)

Status: code verified, 2 files readable

[41272] doi:10.1016/j.bbih.2022.100534 [paper, repository]

Differential expression of MDGA1 in major depressive disorder.

Journal: Brain, behavior, & immunity - health

Authors' code: insilico/DepressionGeneModules (no license)

Status: code verified, 16 files readable, 1 match

[41273] doi:10.1016/j.omtn.2022.10.002 [paper]

miR-196a enhances polymerization of neuronal microfilaments through suppressing IMP3 and upregulating IGF2 in Huntington's disease.

Journal: Molecular therapy. Nucleic acids

Status: data only

[41274] doi:10.1038/s41467-022-33577-2 [paper, repository]

A neural theory for counting memories.

Journal: Nature communications

Authors' code: metalloids/fly_counting (GPL-3.0)

Status: code verified, 5 files readable, 3 matches

[41275] doi:10.1038/s41467-022-33716-9 [paper, repository]

Dual sensing signal decoupling based on tellurium anisotropy for VR interaction and neuro-reflex system application.

Journal: Nature communications

Authors' code: Zenodo 7010536 (CC-BY-4.0)

Status: code verified, 2 files readable

[41276] doi:10.1038/s42003-022-04049-6 [paper, repository]

A quantitative model reveals a frequency ordering of prediction and prediction-error signals in the human brain.

Journal: Communications biology

Authors' code: Zenodo 7084568 (CC-BY-4.0)

Status: code verified, 1 file readable

[41277] doi:10.1073/pnas.2205162119 [paper, repository]

Morphological similarity of amygdala-ventral prefrontal pathways represents trait anxiety in younger and older adults.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: Zenodo 6381396 (other-open)

Status: code verified, 2 files readable, 2 matches

[41278] doi:10.1073/pnas.2205460119 [paper, data]

Attenuation of relapsing fever neuroborreliosis in mice by IL-17A blockade.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 1 dataset cited

[41279] doi:10.1073/pnas.2207293119 [paper, data]

Language and developmental plasticity after perinatal stroke.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 1 dataset cited

[41280] doi:10.1111/evo.14644 [paper, data]

The effect of experimental hybridization on cognition and brain anatomy: Limited phenotypic variation and transgression in Poeciliidae.

Journal: Evolution; international journal of organic evolution

Status: data only, 1 dataset cited

[41281] doi:10.1186/s13195-022-01089-2 [paper, repository]

Altered basal forebrain function during whole-brain network activity at pre- and early-plaque stages of Alzheimer's disease in TgF344-AD rats.

Journal: Alzheimer's research & therapy

Authors' code: DeVosLab/SynapseDetection (CC-BY-NC-SA-4.0)

Status: empty repository, 2 files readable

[41282] doi:10.1371/journal.pcbi.1010547 [paper, repository]

Multiple bumps can enhance robustness to noise in continuous attractor networks.

Journal: PLoS computational biology

Authors' code: louiskang-group/wang-2022 (no license)

Status: code verified, 4 files readable, 6 matches

[41283] doi:10.1371/journal.pcbi.1010594 [paper, repository]

Rapid detection and recognition of whole brain activity in a freely behaving Caenorhabditis elegans.

Journal: PLoS computational biology

Authors' code: Wenlab/CeNDeR (MIT)

Status: code verified, 77 files readable, 10 matches

[41284] doi:10.3389/fnins.2022.1012287 [paper, repository]

The impact of harmonization on radiomic features in Parkinson's disease and healthy controls: A multicenter study.

Journal: Frontiers in neuroscience

Authors' code: rpomponio/neuroHarmonize (MIT)

Status: code verified, 12 files readable, 1 match

[41285] doi:10.7554/elife.77608 [paper, data]

Unrestrained growth of correctly oriented microtubules instructs axonal microtubule orientation.

Journal: eLife

Status: data only, 1 dataset cited

[41286] doi:10.7554/elife.80273 [paper, repository]

Transient regulation of focal adhesion via Tensin3 is required for nascent oligodendrocyte differentiation.

Journal: eLife

Authors' code: ParrasLab/Tns3_paper_eLife_2022 (CC0-1.0)

Status: empty repository, 2 files readable

Sunday, 9 October 2022 (3 papers)

[41287] doi:10.1002/alz.12797 [paper, data]

Increasing participant diversity in AD research: Plans for digital screening, blood testing, and a community-engaged approach in the Alzheimer's Disease Neuroimaging Initiative 4.

Journal: Alzheimer's & dementia : the journal of the Alzheimer's Association

Status: data only, 1 dataset cited

[41288] doi:10.1002/ece3.9319 [paper, repository]

The interplay between prior selection, mild intermittent exposure, and acute severe exposure in phenotypic and transcriptional response to hypoxia.

Journal: Ecology and evolution

Authors' code: Zenodo 6791439 (attribution)

Status: code verified

[41289] doi:10.1186/s13578-022-00907-2 [paper, data]

SK3 in POMC neurons plays a sexually dimorphic role in energy and glucose homeostasis.

Journal: Cell & bioscience

Status: data only, 1 dataset cited

Saturday, 8 October 2022 (10 papers)

[41290] doi:10.1007/s00359-022-01577-8 [paper, repository]

An auditory-responsive interneuron descending from the cricket brain: a new element in the auditory pathway.

Journal: Journal of comparative physiology. A, Neuroethology, sensory, neural, and behavioral physiology

Authors' code: doi:10.6084/m9.figshare.c.3768695 (no license)

Status: code found, still to be checked

[41291] doi:10.1016/j.dib.2022.108663 [paper, repository]

Electroencephalography (EEG) dataset during naturalistic music listening comprising different genres with familiarity and enjoyment ratings.

Journal: Data in brief

Authors' code: brainlab-iitgn/music-project (CC-BY-4.0)

Status: empty repository, 1 file readable

[41292] doi:10.1016/j.isci.2022.105251 [paper]

Remus: System for remote deep brain interventions.

Journal: iScience

Status: code on request

[41293] doi:10.1016/j.isci.2022.105286 [paper, data]

Multimodal assessment of spasticity using a point-of-care instrumented glove to separate neural and biomechanical contributions.

Journal: iScience

Status: data only, 2 datasets cited

[41294] doi:10.1016/j.psyneuen.2022.105951 [paper, data]

The energetic cost of allostasis and allostatic load.

Journal: Psychoneuroendocrinology

Status: data only, 3 datasets cited

[41295] doi:10.1177/17562864221129380 [paper, data]

Machine learning prediction of symptomatic intracerebral hemorrhage after stroke thrombolysis: a cross-cultural validation in Caucasian and Han Chinese cohort.

Journal: Therapeutic advances in neurological disorders

Status: data only, 2 datasets cited

[41296] doi:10.1186/s12887-022-03637-z [paper, data]

Pediatric reference values of anterior visual pathway structures measured with axis-correction on high-resolution 3D T2 fast spin echo sequences.

Journal: BMC pediatrics

Status: data only, 1 dataset cited

[41297] doi:10.1186/s12915-022-01424-x [paper, data]

Dissection of a sensorimotor circuit underlying pathogen aversion in C. elegans.

Journal: BMC biology

Status: data only, 1 dataset cited

[41298] doi:10.3390/molecules27196686 [paper, data]

Andrographolide Induces G2/M Cell Cycle Arrest and Apoptosis in Human Glioblastoma DBTRG-05MG Cell Line via ERK1/2 /c-Myc/p53 Signaling Pathway.

Journal: Molecules (Basel, Switzerland)

Status: data only, 2 datasets cited

[41299] doi:10.3390/molecules27196696 [paper, data]

Revealing Angiopep-2/LRP1 Molecular Interaction for Optimal Delivery to Glioblastoma (GBM).

Journal: Molecules (Basel, Switzerland)

Status: data only, 2 datasets cited

Friday, 7 October 2022 (26 papers)

[41300] doi:10.1002/hbm.26098 [paper, repository]

Morphological fingerprinting: Identifying patients with first-episode schizophrenia using auto-encoded morphological patterns.

Journal: Human brain mapping

Authors' code: MAI-Lab-West-China-Hospital/Convolutional-autoencoder-for-labeled-volume (MIT)

Status: code verified, 4 files readable, 1 match

[41301] doi:10.1002/hbm.26099 [paper, data]

Functional connectivity gradients of the insula to different cerebral systems.

Journal: Human brain mapping

Status: data only, 1 dataset cited

[41302] doi:10.1002/hbm.26105 [paper, repository]

Use of multi-perturbation Shapley analysis in lesion studies of functional networks: The case of upper limb paresis.

Journal: Human brain mapping

Authors' code: ShayOfir/MSA (BSD-3-Clause)

Status: code verified, 4 files readable, 3 matches

[41303] doi:10.1016/j.cnp.2022.09.004 [paper, repository]

Changes of interictal epileptiform discharges during medication withdrawal and seizures: A scalp EEG marker of epileptogenicity.

Journal: Clinical neurophysiology practice

Authors' code: EricMenetre/NPL (no license)

Status: code verified, 28 files readable

[41304] doi:10.1016/j.isci.2022.105278 [paper]

Dopaminergic neurons are not a major Sonic hedgehog ligand source for striatal cholinergic or PV interneurons.

Journal: iScience

Status: code on request

[41305] doi:10.1016/j.isci.2022.105288 [paper]

Increased &lt;i&gt;KIF11&lt;/i&gt;/&lt;i&gt;kinesin-5&lt;/i&gt; expression offsets Alzheimer Aβ-mediated toxicity and cognitive dysfunction.

Journal: iScience

Status: code on request

[41306] doi:10.1016/j.isci.2022.105308 [paper]

Transplanted human induced pluripotent stem cells- derived retinal ganglion cells embed within mouse retinas and are electrophysiologically functional.

Journal: iScience

Status: code on request

[41307] doi:10.1016/j.xpro.2022.101753 [paper, data]

Optimized protocol for obtaining and characterizing primary neuron-enriched cultures from embryonic chicken brains.

Journal: STAR protocols

Status: data only, 1 dataset cited

[41308] doi:10.1016/j.ynirp.2022.100137 [paper, repository]

Cortical thickness in brain imaging studies using FreeSurfer and CAT12: A matter of reproducibility.

Journal: Neuroimage. Reports

Authors' code: cibit-uc.github.io/fs-cat12-cortical-thickness-reproducibility (no license)

Status: code verified

[41309] doi:10.1038/s41380-022-01818-x [paper, repository]

Alcohol reverses the effects of KCNJ6 (GIRK2) noncoding variants on excitability of human glutamatergic neurons.

Journal: Molecular psychiatry

Authors' code: rhart604/imagej (GPL-3.0)

Status: empty repository, 2 files readable

[41310] doi:10.1038/s41418-022-01072-2 [paper, data]

Integrin-KCNB1 potassium channel complexes regulate neocortical neuronal development and are implicated in epilepsy.

Journal: Cell death and differentiation

Status: data only, 1 dataset cited

[41311] doi:10.1038/s41422-022-00719-6 [paper, repository]

Single-cell epigenome analysis reveals age-associated decay of heterochromatin domains in excitatory neurons in the mouse brain.

Journal: Cell research

Authors' code: ren-lab/hic-pipeline (GPL-3.0), cxzhu/Paired-Tag (MIT), shawnzhangyx/mouse_aging (no license)

Status: code verified, 413 files readable, 9 matches

[41312] doi:10.1038/s41467-022-33464-w [paper, data]

Pericyte remodeling is deficient in the aged brain and contributes to impaired capillary flow and structure.

Journal: Nature communications

Status: data only, 2 datasets cited

[41313] doi:10.1038/s41467-022-33507-2 [paper, repository]

Behaviourally modulated hippocampal theta oscillations in the ferret persist during both locomotion and immobility.

Journal: Nature communications

Authors' code: slsdunn/theta-paper-code (GPL-3.0)

Status: code verified, 116 files readable, 21 matches

[41314] doi:10.1038/s41467-022-33585-2 [paper, data]

Uncertainty modulates visual maps during noninstrumental information demand.

Journal: Nature communications

Status: data only, 1 dataset cited

[41315] doi:10.1038/s41467-022-33642-w [paper, repository]

Prevalence and mechanisms of somatic deletions in single human neurons during normal aging and in DNA repair disorders.

Journal: Nature communications

Authors' code: sourceforge.net/phasedel (no license)

Status: code verified

[41316] doi:10.1038/s41597-022-01713-8 [paper, repository]

Multimodal Data for the Detection of Freezing of Gait in Parkinson's Disease.

Journal: Scientific data

Authors' code: Zenodo 23955452 (MIT), Zenodo 23970615 (MIT), Zenodo 23955453 (MIT)

Status: code verified, 101 files readable

[41317] doi:10.1088/1741-2552/ac9339 [paper, repository]

Thermal effects on neurons during stimulation of the brain.

Journal: Journal of neural engineering

Authors' code: Schiff-Lab (no license)

Status: code verified

[41318] doi:10.1126/sciadv.abn5535 [paper, data]

Single-cell RNA sequencing uncovers a neuron-like macrophage subset associated with cancer pain.

Journal: Science advances

Status: data only, 1 dataset cited

[41319] doi:10.1136/svn-2022-001631 [paper, data]

<i>NOTCH2NLC</i> expanded GGC repeats in patients with cerebral small vessel disease.

Journal: Stroke and vascular neurology

Status: data only, 1 dataset cited

[41320] doi:10.1161/strokeaha.122.037761 [paper, data]

Vascular Collagen Type-IV in Hypertension and Cerebral Small Vessel Disease.

Journal: Stroke

Status: data only, 4 datasets cited

[41321] doi:10.1186/s12859-022-04972-9 [paper, data]

Comparative transcriptomics analysis pipeline for the meta-analysis of phylogenetically divergent datasets (CoRMAP).

Journal: BMC bioinformatics

Status: data only, 3 datasets cited

[41322] doi:10.1371/journal.pone.0269351 [paper, data]

Relationship between finger movement characteristics and brain voxel-based morphometry.

Journal: PloS one

Status: data only, 1 dataset cited

[41323] doi:10.3390/cancers14194915 [paper, repository]

Transcriptome Analysis Identifies Accumulation of Natural Killer Cells with Enhanced Lymphotoxin-β Expression during Glioblastoma Progression.

Journal: Cancers

Authors' code: ventolab/CellphoneDB (MIT), cgga.org.cn/analyse/rna-data-survival-result.jsp (no license), cgga.org.cn/tools/plot_survival.jsp (no license)

Status: code verified, 66 files readable

[41324] doi:10.3390/ijms231911902 [paper, data]

Assessment of DDAH1 and DDAH2 Contributions to Psychiatric Disorders via In Silico Methods.

Journal: International journal of molecular sciences

Status: data only, 1 dataset cited

[41325] doi:10.3390/nu14194163 [paper, data]

Neuroprotective Effects of Sodium Butyrate and Monomethyl Fumarate Treatment through GPR109A Modulation and Intestinal Barrier Restoration on PD Mice.

Journal: Nutrients

Status: data only, 4 datasets cited

Thursday, 6 October 2022 (28 papers)

[41326] doi:10.1007/s00018-022-04555-0 [paper, data]

Phagocytosing differentiated cell-fragments is a novel mechanism for controlling somatic stem cell differentiation within a short time frame.

Journal: Cellular and molecular life sciences : CMLS

Status: data only, 1 dataset cited

[41327] doi:10.1007/s00415-022-11412-4 [paper, data]

Dystonia management across Europe within ERN-RND: current state and future challenges.

Journal: Journal of neurology

Status: data only, 1 dataset cited

[41328] doi:10.1016/j.isci.2022.105287 [paper]

Positive interaction between ASH and ASK sensory neurons accelerates nociception and inhibits behavioral adaptation.

Journal: iScience

Status: code on request

[41329] doi:10.1016/j.isci.2022.105300 [paper]

Testosterone protects mice against zika virus infection and suppresses the inflammatory response in the brain.

Journal: iScience

Status: code on request

[41330] doi:10.1038/s41398-022-02117-3 [paper, repository]

Association between attention-deficit/hyperactivity disorder symptom severity and white matter integrity moderated by in-scanner head motion.

Journal: Translational psychiatry

Authors' code: sdziem/DTIPreprocessingPipeline (no license)

Status: code verified, 15 files readable, 3 matches

[41331] doi:10.1038/s41398-022-02202-7 [paper]

Altered language network lateralization in euthymic bipolar patients: a pilot study.

Journal: Translational psychiatry

Status: code on request

[41332] doi:10.1038/s41467-022-33364-z [paper, repository]

Modeling human telencephalic development and autism-associated SHANK3 deficiency using organoids generated from single neural rosettes.

Journal: Nature communications

Authors' code: yueqiw/shiny_cell_browser (no license), yueqiw/ephys_analysis (BSD-2-Clause)

Status: code verified, 24 files readable, 12 matches

[41333] doi:10.1038/s41592-022-01625-w [paper, repository]

neuromaps: structural and functional interpretation of brain maps.

Journal: Nature methods

Authors' code: netneurolab/neuromaps (CC-BY-NC-SA-4.0), figshare 3502238 (CC-BY-4.0), danjgale/surfplot (BSD-3-Clause)

Status: code verified, 82 files readable, 4 matches

[41334] doi:10.1038/s41598-022-19994-9 [paper]

Structure-function clustering in weighted brain networks.

Journal: Scientific reports

Status: code on request

[41335] doi:10.1038/s41598-022-20588-8 [paper, repository]

Test-retest reliability of upper limb robotic exoskeleton assessments in children and youths with brain lesions.

Journal: Scientific reports

Authors' code: figshare 9741221 (MIT)

Status: code verified, 27 files readable, 4 matches

[41336] doi:10.1038/s41598-022-20703-9 [paper, repository]

Robustness of radiomics to variations in segmentation methods in multimodal brain MRI.

Journal: Scientific reports

Authors' code: DEPREDICT/SLEEEP (no license)

Status: code verified, 44 files readable, 7 matches

[41337] doi:10.1038/s41598-022-21022-9 [paper, repository]

A miniature fluorescence microscope for multi-plane imaging.

Journal: Scientific reports

Authors' code: giovannibarbera/miniscope_v2.0 (GPL-3.0)

Status: empty repository, 1 file readable

[41338] doi:10.1073/pnas.2113896119 [paper, repository]

Comparing the development of cortex-wide gene expression patterns between two species in a common reference frame.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: ABRG-Models/Stalefish (GPL-3.0)

Status: code verified, 49 files readable, 5 matches

[41339] doi:10.1093/braincomms/fcac252 [paper, repository]

Brain age predicts long-term recovery in post-stroke aphasia.

Journal: Brain communications

Authors' code: james-cole/brainageR (LGPL-3.0)

Status: code verified, 9 files readable

[41340] doi:10.1111/psyp.14192 [paper, data]

The impact of anxiety on postural control: CO₂ challenge model.

Journal: Psychophysiology

Status: data only, 1 dataset cited

[41341] doi:10.1186/s12974-022-02610-y [paper, data]

Neuroinflammatory transcriptional programs induced in rhesus pre-frontal cortex white matter during acute SHIV infection.

Journal: Journal of neuroinflammation

Status: data only, 1 dataset cited

[41342] doi:10.1523/jneurosci.1063-22.2022 [paper, repository]

The Theta Paradox: 4-8 Hz EEG Oscillations Reflect Both Sleep Pressure and Cognitive Control.

Journal: The Journal of neuroscience : the official journal of the Society for Neuroscience

Authors' code: snipeso/Theta-SD-vs-WM (MIT), snipeso/match2sample (no license), snipeso/LAT (no license), snipeso/pvt (no license), snipeso/SFT (no license)

Status: code verified, 316 files readable, 12 matches

[41343] doi:10.2903/j.efsa.2022.7550 [paper, repository]

Retrospective cumulative dietary risk assessment of craniofacial alterations by residues of pesticides.

Journal: EFSA journal. European Food Safety Authority

Authors' code: Zenodo 3548760 (CC-BY-4.0)

Status: empty repository

[41344] doi:10.3389/fncel.2022.877131 [paper, data]

Isolation of ferret astrocytes reveals their morphological, transcriptional, and functional differences from mouse astrocytes.

Journal: Frontiers in cellular neuroscience

Status: data only, 1 dataset cited

[41345] doi:10.3389/fncel.2022.984282 [paper, repository]

Night skies through animals' eyes-Quantifying night-time visual scenes and light pollution as viewed by animals.

Journal: Frontiers in cellular neuroscience

Authors' code: sciencedjinn/elf (no license)

Status: code verified, 92 files readable, 2 matches

[41346] doi:10.3389/fnhum.2022.886938 [paper]

Modulation of Spectral Representation and Connectivity Patterns in Response to Visual Narrative in the Human Brain.

Journal: Frontiers in human neuroscience

Status: code on request

[41347] doi:10.3389/fnhum.2022.992649 [paper, repository]

Paradoxical markers of conscious levels: Effects of propofol on patients in disorders of consciousness.

Journal: Frontiers in human neuroscience

Authors' code: BIAPT/Python_Connectivity (no license)

Status: code verified, 4 files readable

[41348] doi:10.3389/fphys.2022.1009647 [paper, repository]

Validation of <i>in silico</i> biomarkers for drug screening through ordinal logistic regression.

Journal: Frontiers in physiology

Authors' code: FDA/CiPA (GPL-3.0)

Status: code verified, 34 files readable, 3 matches

[41349] doi:10.3389/fpsyt.2022.955871 [paper]

Adverse childhood experiences and fronto-subcortical structures in the developing brain.

Journal: Frontiers in psychiatry

Status: code on request

[41350] doi:10.3389/fspor.2022.945341 [paper, repository]

Mobile electroencephalography captures differences of walking over even and uneven terrain but not of single and dual-task gait.

Journal: Frontiers in sports and active living

Authors' code: BeMoBIL/bemobil-pipeline (GPL-3.0), nadinejac/gaiteeg_task_terrain (MIT)

Status: code verified, 140 files readable, 21 matches

[41351] doi:10.3390/cells11193140 [paper, data]

Willin/FRMD6 Mediates Mitochondrial Dysfunction Relevant to Neuronal Aβ Toxicity.

Journal: Cells

Status: data only, 1 dataset cited

[41352] doi:10.3390/cells11193146 [paper, data]

Global Transcriptional and Epigenetic Reconfiguration during Chemical Reprogramming of Human Retinal Pigment Epithelial Cells into Photoreceptor-like Cells.

Journal: Cells

Status: data only, 1 dataset cited

[41353] doi:10.3390/ijerph191912784 [paper, repository]

An Adaptive Motivation Approach to Understanding the 'How' and 'Why' of Wellbeing.

Journal: International journal of environmental research and public health

Authors' code: pythoro/pywellbeing (MIT)

Status: code verified, 7 files readable, 1 match

Wednesday, 5 October 2022 (28 papers)

[41354] doi:10.1002/brb3.2763 [paper]

A medium-weight deep convolutional neural network-based approach for onset epileptic seizures classification in EEG signals.

Journal: Brain and behavior

Status: code on request

[41355] doi:10.1002/epi4.12655 [paper, repository]

Interpretable deep learning-based hippocampal sclerosis classification.

Journal: Epilepsia open

Authors' code: donny8/Interpretable-Hippocampal-Sclerosis-Classification (no license)

Status: code verified, 107 files readable, 5 matches

[41356] doi:10.1002/jnr.25131 [paper, repository]

Machine learning classification reveals robust morphometric biomarker of glial and neuronal arbors.

Journal: Journal of neuroscience research

Authors' code: masood-akram/classification_neurons-glia (MIT)

Status: code verified, 14 files readable, 8 matches

[41357] doi:10.1007/s00018-022-04506-9 [paper, repository]

Hetero-pentamerization determines mobility and conductance of Glycine receptor α3 splice variants.

Journal: Cellular and molecular life sciences : CMLS

Authors' code: cup.uni-muenchen.de/pc/lamb (no license), PAM-PIE/PAM (GPL-3.0), PAM-PIE/PAMcompiled (GPL-3.0)

Status: code verified, 1,231 files readable, 2 matches

[41358] doi:10.1007/s12021-022-09608-0 [paper]

Bayesian Coherence Analysis for Microcircuit Structure Learning.

Journal: Neuroinformatics

Status: code on request

[41359] doi:10.1016/j.jgr.2022.09.008 [paper, repository]

Proteomic analysis for the effects of non-saponin fraction with rich polysaccharide from Korean Red Ginseng on Alzheimer's disease in a mouse model.

Journal: Journal of ginseng research

Authors' code: SysBioChalmers/Human-GEM (CC-BY-4.0)

Status: code verified, 71 files readable

[41360] doi:10.1021/acschemneuro.2c00448 [paper, repository]

Tryptophan Hydroxylase 2 Knockout Male Rats Exhibit a Strengthened Oxytocin System, Are Aggressive, and Are Less Anxious.

Journal: ACS chemical neuroscience

Authors' code: gitlab.socsci.ru.nl/preclinical-neuroimaging/tph2 (no license)

Status: code verified, 3 files readable, 2 matches

[41361] doi:10.1038/s41380-022-01786-2 [paper, repository]

SARS-CoV-2 promotes microglial synapse elimination in human brain organoids.

Journal: Molecular psychiatry

Authors' code: SellgrenLab/organoid-Covid19 (no license)

Status: code verified, 7 files readable, 4 matches

[41362] doi:10.1038/s41467-022-33467-7 [paper, repository]

Thermosensation in Caenorhabditis elegans is linked to ubiquitin-dependent protein turnover via insulin and calcineurin signalling.

Journal: Nature communications

Authors' code: nevelsk90/Celegans_sensingDyf1 (no license), Zenodo 7007326 (other-open)

Status: code verified, 4 files readable, 1 match

[41363] doi:10.1038/s41586-022-05172-4 [paper, repository]

Discovering faster matrix multiplication algorithms with reinforcement learning.

Journal: Nature

Authors' code: deepmind/alphatensor (Apache-2.0)

Status: code verified, 12 files readable, 3 matches

[41364] doi:10.1038/s41586-022-05279-8 [paper, repository]

Inferring and perturbing cell fate regulomes in human brain organoids.

Journal: Nature

Authors' code: ratschlab/scim (LGPL-3.0), quadbiolab/Pando (MIT), quadbiolab/organoid_regulomes (no license)

Status: code verified, 69 files readable, 32 matches

[41365] doi:10.1038/s41598-022-20562-4 [paper]

Effects of exploring a novel environment on memory across the lifespan.

Journal: Scientific reports

Status: code on request

[41366] doi:10.1098/rsif.2022.0649 [paper, repository]

Modelling collateral flow and thrombus permeability during acute ischaemic stroke.

Journal: Journal of the Royal Society, Interface

Authors' code: Rpadmos/Collaterals_Porous-clots (BSD-3-Clause)

Status: code verified, 36 files readable, 10 matches

[41367] doi:10.1101/gr.276477.121 [paper, repository]

A model-based constrained deep learning clustering approach for spatially resolved single-cell data.

Journal: Genome research

Authors' code: edward130603/BayesSpace (other), BiomedicalMachineLearning/stLearn (BSD-3-Clause), xianglin226/DSSC (Apache-2.0), genome.cshlp.org/lookup/suppl (no license)

Status: code verified, 186 files readable, 10 matches

[41368] doi:10.1126/sciadv.abj4853 [paper, repository]

CMU Array: A 3D nanoprinted, fully customizable high-density microelectrode array platform.

Journal: Science advances

Authors' code: billkarsh/SpikeGLX (BSD-3-Clause)

Status: code verified, 361 files readable

[41369] doi:10.1155/2022/4665530 [paper, data]

The Potential Role of Voltage-Dependent Anion Channel in the Treatment of Parkinson's Disease.

Journal: Oxidative medicine and cellular longevity

Status: data only, 1 dataset cited

[41370] doi:10.1186/s12915-022-01428-7 [paper, data]

Attention to visual motion suppresses neuronal and behavioral sensitivity in nearby feature space.

Journal: BMC biology

Status: data only, 1 dataset cited

[41371] doi:10.1186/s12974-022-02608-6 [paper, data]

Microglial-oligodendrocyte interactions in myelination and neurological function recovery after traumatic brain injury.

Journal: Journal of neuroinflammation

Status: data only, 1 dataset cited

[41372] doi:10.1186/s13195-022-01088-3 [paper, data]

Associations of resting heart rate with incident dementia, cognition, and brain structure: a prospective cohort study of UK biobank.

Journal: Alzheimer's research & therapy

Status: data only, 2 datasets cited

[41373] doi:10.12688/wellcomeopenres.18028.2 [paper, repository]

Clinical efficacy and neurobiological correlates of electroconvulsive therapy in patients with clozapine-resistant/intolerant schizophrenia: study protocol of multi-site parallel arm double-blind randomized sham-controlled study.

Journal: Wellcome open research

Authors' code: OSF j7qym (no license)

Status: empty repository

[41374] doi:10.1371/journal.pone.0274833 [paper, data]

Effects of contact with a dog on prefrontal brain activity: A controlled trial.

Journal: PloS one

Status: data only, 1 dataset cited

[41375] doi:10.3389/fncom.2022.918031 [paper, repository]

A neural network model for timing control with reinforcement.

Journal: Frontiers in computational neuroscience

Authors' code: wangjing0/vARNN (no license)

Status: code verified, 13 files readable, 5 matches

[41376] doi:10.3389/fneur.2022.926187 [paper, data]

A lesion extending three or more slices as a predictor of progressive infarction in anterior circulation small subcortical infarction.

Journal: Frontiers in neurology

Status: data only, 1 dataset cited

[41377] doi:10.3389/fphar.2022.990586 [paper]

Protective effect of zinc oxide nanoparticles on spinal cord injury.

Journal: Frontiers in pharmacology

Status: data only

[41378] doi:10.3389/fpsyg.2022.1004504 [paper, data]

Moderate physical activity alters the estimation of time, but not space.

Journal: Frontiers in psychology

Status: data only, 1 dataset cited

[41379] doi:10.7554/elife.57520 [paper, data]

Single-cell transcriptomics reveals functionally specialized vascular endothelium in brain.

Journal: eLife

Status: data only, 7 datasets cited

[41380] doi:10.7554/elife.75056 [paper, repository]

The individuality of shape asymmetries of the human cerebral cortex.

Journal: eLife

Authors' code: reuter.mit.edu/software/shapedna (no license), cyctbdbw/Shape-Asymmetry-Signature (CC-BY-NC-SA-4.0)

Status: code verified, 16 files readable, 7 matches

[41381] doi:10.7554/elife.76691 [paper, data]

Chronic Ca²⁺ imaging of cortical neurons with long-term expression of GCaMP-X.

Journal: eLife

Status: data only, 1 dataset cited

Tuesday, 4 October 2022 (23 papers)

[41382] doi:10.1016/j.dcn.2022.101159 [paper, data]

Neurodevelopmental differences in task-evoked number network connectivity: Comparing symbolic and nonsymbolic number discrimination in children and adults.

Journal: Developmental cognitive neuroscience

Status: data only, 1 dataset cited

[41383] doi:10.1016/j.isci.2022.105262 [paper, data]

Kinesin-2 motors differentially impact biogenesis of extracellular vesicle subpopulations shed from sensory cilia.

Journal: iScience

Status: code on request, 1 dataset cited

[41384] doi:10.1016/j.isci.2022.105263 [paper]

D2R signaling in striatal spiny neurons modulates L-DOPA induced dyskinesia.

Journal: iScience

Status: code on request

[41385] doi:10.1016/j.isci.2022.105267 [paper, repository]

Assessing the ecological validity of numerosity-selective neuronal populations with real-world natural scenes.

Journal: iScience

Authors' code: kaggle.com/c/imagenet-object-localization-challenge (no license)

Status: dead link

[41386] doi:10.1016/j.isci.2022.105274 [paper]

Night vision restored in days after decades of congenital blindness.

Journal: iScience

Status: code on request

[41387] doi:10.1016/j.isci.2022.105276 [paper, repository]

Integrative genomic analysis facilitates precision strategies for glioblastoma treatment.

Journal: iScience

Authors' code: YuLab-SMU/clusterProfiler (no license), satijalab/seurat (other), sunduanchen/Scissor (GPL-3.0), jlaffy/scrabble (other), rcastelo/GSVA (no license), Liuzhicheng048/GBM (no license)

Status: code verified, 374 files readable, 10 matches

[41388] doi:10.1016/j.isci.2022.105279 [paper, repository]

A multi-omics approach to visualize early neuronal differentiation from hESCs in 4D.

Journal: iScience

Authors' code: SGDDNB/ShinyCell (GPL-3.0), EskelandLab/ShinyArchRUiO (GPL-3.0), ConesaLab/MORE (no license), immunogenomics/harmony (no license), asntech/intervene-shiny (BSD-3-Clause), macs3-project/MACS (BSD-3-Clause), ncborcherding/escape (other), PF2-pasteur-fr/SARTools (no license), EskelandLab/scNeuronaldiff (GPL-3.0)

Status: code verified, 388 files readable, 22 matches

[41389] doi:10.1038/s41467-022-33581-6 [paper, repository]

Recurrent neural networks with explicit representation of dynamic latent variables can mimic behavioral patterns in a physical inference task.

Journal: Nature communications

Authors' code: RishiRajalingham/MPongBehavior_public (no license)

Status: code verified, 42 files readable, 8 matches

[41390] doi:10.1038/s41598-022-20745-z [paper, repository]

Calibrating cardiac electrophysiology models using latent Gaussian processes on atrial manifolds.

Journal: Scientific reports

Authors' code: Zenodo 7081857 (other-open), Zenodo 3758042 (other-open), samcoveney/qulati (GPL-3.0), samcoveney/mmserp (no license)

Status: code verified, 48 files readable, 7 matches

[41391] doi:10.1038/s42003-022-04028-x [paper, repository]

Meta-connectomic analysis maps consistent, reproducible, and transcriptionally relevant functional connectome hubs in the human brain.

Journal: Communications biology

Authors' code: MICA-MNI/ENIGMA (BSD-3-Clause), Zenodo 7106831 (other-open), zhileixu/functionalconnectomehubs (no license)

Status: code verified, 179 files readable, 14 matches

[41392] doi:10.1073/pnas.2200511119 [paper, repository]

Mind blanking is a distinct mental state linked to a recurrent brain profile of globally positive connectivity during ongoing mentation.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: gitlab.uliege.be/s.mortaheb/mind_blanking (no license)

Status: code verified, 44 files readable, 7 matches

[41393] doi:10.1186/s12974-022-02602-y [paper, data]

Emerging role of STING signalling in CNS injury: inflammation, autophagy, necroptosis, ferroptosis and pyroptosis.

Journal: Journal of neuroinflammation

Status: data only, 2 datasets cited

[41394] doi:10.1242/dev.200413 [paper, data]

Young transposable elements rewired gene regulatory networks in human and chimpanzee hippocampal intermediate progenitors.

Journal: Development (Cambridge, England)

Status: data only, 1 dataset cited

[41395] doi:10.1371/journal.pcbi.1010564 [paper, repository]

Dual STDP processes at Purkinje cells contribute to distinct improvements in accuracy and speed of saccadic eye movements.

Journal: PLoS computational biology

Authors' code: Zenodo 7113780 (CC-BY-4.0)

Status: code verified, 6 files readable

[41396] doi:10.17912/micropub.biology.000643 [paper, repository]

Validation of Deep Learning-based Sleep State Classification.

Journal: microPublication biology

Authors' code: zekebarger/AccuSleep (GPL-3.0)

Status: code verified, 21 files readable, 2 matches

[41397] doi:10.3389/fnagi.2022.921518 [paper, data]

Verbal intelligence and leisure activities are associated with cognitive performance and resting-state electroencephalogram.

Journal: Frontiers in aging neuroscience

Status: data only, 1 dataset cited

[41398] doi:10.3389/fnins.2022.949934 [paper, repository]

Brain serotonergic fibers suggest anomalous diffusion-based dropout in artificial neural networks.

Journal: Frontiers in neuroscience

Authors' code: deep-deep-learning/fbm-dropout (no license)

Status: code verified, 10 files readable

[41399] doi:10.3389/fnins.2022.964310 [paper, data]

Corresponding anatomical of the macaque superior parietal lobule areas 5 (PE) subdivision reveal similar connectivity patterns with humans.

Journal: Frontiers in neuroscience

Status: data only, 1 dataset cited

[41400] doi:10.3389/fnmol.2022.999605 [paper, data]

Automatic autism spectrum disorder detection using artificial intelligence methods with MRI neuroimaging: A review.

Journal: Frontiers in molecular neuroscience

Status: data only, 1 dataset cited

[41401] doi:10.3389/fphar.2022.966279 [paper, data]

NLRP3 neuroinflammatory factors may be involved in atopic dermatitis mental disorders: an animal study.

Journal: Frontiers in pharmacology

Status: data only, 1 dataset cited

[41402] doi:10.3389/ftox.2022.948455 [paper, data]

Differences in neurotoxic outcomes of organophosphorus pesticides revealed <i>via</i> multi-dimensional screening in adult and regenerating planarians.

Journal: Frontiers in toxicology

Status: data only, 1 dataset cited

[41403] doi:10.3390/jcm11195863 [paper, data]

Glioma Shapes Blood-Brain Barrier Integrity and Remodels the Tumor Microenvironment: Links with Clinical Features and Prognosis.

Journal: Journal of clinical medicine

Status: data only, 2 datasets cited

[41404] doi:10.7554/elife.78362 [paper, data]

The Neurodata Without Borders ecosystem for neurophysiological data science.

Journal: eLife

Status: data only, 71 datasets cited

Monday, 3 October 2022 (40 papers, 36 on this page)

[41405] doi:10.1002/hbm.26086 [paper, repository]

Differential contributions of inferior frontal gyrus subregions to sentence processing guided by intonation.

Journal: Human brain mapping

Authors' code: OSF 5k8ze (no license)

Status: code verified, 1 file readable, 2 matches

[41406] doi:10.1002/hbm.26094 [paper, repository]

Modelling the depth-dependent VASO and BOLD responses in human primary visual cortex.

Journal: Human brain mapping

Authors' code: AtenaAkbari/cortical-vascular-model (no license)

Status: code verified, 36 files readable, 10 matches

[41407] doi:10.1007/s00429-022-02575-x [paper, repository]

Stroke disconnectome decodes reading networks.

Journal: Brain structure & function

Authors' code: bcblab.com/bcb/coding (no license)

Status: dead link

[41408] doi:10.1007/s10618-022-00865-w [paper, repository]

POI recommendation with queuing time and user interest awareness.

Journal: Data mining and knowledge discovery

Authors' code: rahmanidashti/STACP (no license)

Status: code verified, 7 files readable

[41409] doi:10.1007/s10803-022-05767-w [paper]

A Fusion-Based Machine Learning Approach for Autism Detection in Young Children Using Magnetoencephalography Signals.

Journal: Journal of autism and developmental disorders

Status: code on request

[41410] doi:10.1016/j.ibneur.2022.09.009 [paper, repository]

The transcriptome of rat hippocampal subfields.

Journal: IBRO neuroscience reports

Authors' code: alexdobin/STAR (MIT)

Status: code verified, 331 files readable

[41411] doi:10.1038/s41380-022-01796-0 [paper, data]

Single-nucleus RNA sequencing of midbrain blood-brain barrier cells in schizophrenia reveals subtle transcriptional changes with overall preservation of cellular proportions and phenotypes.

Journal: Molecular psychiatry

Status: data only, 1 dataset cited

[41412] doi:10.1038/s41398-022-02205-4 [paper, data]

Peripheral level of CD33 and Alzheimer's disease: a bidirectional two-sample Mendelian randomization study.

Journal: Translational psychiatry

Status: code on request, 2 datasets cited

[41413] doi:10.1038/s41467-022-33578-1 [paper, repository]

Receptor-informed network control theory links LSD and psilocybin to a flattening of the brain's control energy landscape.

Journal: Nature communications

Authors' code: Zenodo 6968138 (other-open), singlesp/energy_landscape (no license)

Status: code verified, 213 files readable, 5 matches

[41414] doi:10.1038/s42003-022-03655-8 [paper]

White matter connectivity in brain networks supporting social and affective processing predicts real-world social network characteristics.

Journal: Communications biology

Status: code on request

[41415] doi:10.1038/s43856-022-00180-x [paper, repository]

Interpretable machine learning prediction of all-cause mortality.

Journal: Communications medicine

Authors' code: suinleelab/IMPACT (MIT), Zenodo 6899541 (CC-BY-4.0)

Status: code verified, 6 files readable, 2 matches

[41416] doi:10.1073/pnas.2201655119 [paper, data]

How musical rhythm training improves short-term memory for faces.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 2 datasets cited

[41417] doi:10.1073/pnas.2203039119 [paper, data]

Hippocampus and temporal pole functional connectivity is associated with age and individual differences in autobiographical memory.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 2 datasets cited

[41418] doi:10.1073/pnas.2204900119 [paper, repository]

Human cerebellum and corticocerebellar connections involved in emotional memory enhancement.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: OSF ghtvy (no license)

Status: code verified

[41419] doi:10.1073/pnas.2207032119 [paper, repository]

In vivo extracellular recordings of thalamic and cortical visual responses reveal V1 connectivity rules.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: doi.gin.g-node.org/10.12751/g-node.qwc7y5 (no license)

Status: code verified

[41420] doi:10.1073/pnas.2207089119 [paper, data]

Coherent enhancement of optical remission in diffusive media.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 1 dataset cited

[41421] doi:10.1093/braincomms/fcac251 [paper, data]

Axon hyperexcitability in the contralateral projection following unilateral optic nerve crush in mice.

Journal: Brain communications

Status: data only, 1 dataset cited

[41422] doi:10.1101/2022.10.01.510246 [paper, data]

Organization of reward and movement signals in the basal ganglia and cerebellum

Journal: bioRxiv (preprint)

Status: data only, 1 dataset cited

[41423] doi:10.1111/cns.13982 [paper, data]

Brain Energy Metabolism: Astrocytes in Neurodegenerative Diseases.

Journal: CNS neuroscience & therapeutics

Status: data only, 4 datasets cited

[41424] doi:10.1177/13524585221125381 [paper, data]

Inhibitory synaptic loss drives network changes in multiple sclerosis: An ex vivo to in silico translational study.

Journal: Multiple sclerosis (Houndmills, Basingstoke, England)

Status: data only, 1 dataset cited

[41425] doi:10.1186/s13195-022-01073-w [paper, data]

Immuno-digital invasive cleavage assay for analyzing Alzheimer's amyloid ß-bound extracellular vesicles.

Journal: Alzheimer's research & therapy

Status: data only, 1 dataset cited

[41426] doi:10.1371/journal.pcbi.1010569 [paper, repository]

Cross-scale excitability in networks of quadratic integrate-and-fire neurons.

Journal: PLoS computational biology

Authors' code: danieleavitabile/cross-scale-excitability-qif (MIT)

Status: code verified, 16 files readable

[41427] doi:10.26508/lsa.202201530 [paper, repository]

Translatome profiling in fatal familial insomnia implicates TOR signaling in somatostatin neurons.

Journal: Life science alliance

Authors' code: susannebauer/familialPrD (no license)

Status: code verified, 8 files readable, 18 matches

[41428] doi:10.3389/fcell.2022.1011109 [paper, data]

BAF (mSWI/SNF) complex regulates mediolateral cortical patterning in the developing forebrain.

Journal: Frontiers in cell and developmental biology

Status: data only, 1 dataset cited

[41429] doi:10.3389/fgene.2022.1009145 [paper, data]

Expression pattern and clinical value of Key RNA methylation modification regulators in ischemic stroke.

Journal: Frontiers in genetics

Status: data only, 1 dataset cited

[41430] doi:10.3389/fgene.2022.1015505 [paper, data]

Studies on the molecular level changes and potential resistance mechanism of <i>Coreius guichenoti</i> under temperature stimulation.

Journal: Frontiers in genetics

Status: data only, 1 dataset cited

[41431] doi:10.3389/fgene.2022.997460 [paper, repository]

Prediction of transcript isoforms in 19 chicken tissues by Oxford Nanopore long-read sequencing.

Journal: Frontiers in genetics

Authors' code: nanoporetech/pipeline-nanopore-ref-isoforms (no license), guandailu/nanopore_annotation (no license)

Status: code verified, 2 files readable

[41432] doi:10.3389/fnagi.2022.967146 [paper]

Identification of potential drug targets for vascular dementia and carotid plaques by analyzing underlying molecular signatures shared by them.

Journal: Frontiers in aging neuroscience

Status: data only

[41433] doi:10.3389/fncir.2022.994548 [paper, data]

Auditory processing neurons influence song evaluation and strength of mate preference in female songbirds.

Journal: Frontiers in neural circuits

Status: data only, 1 dataset cited

[41434] doi:10.3389/fnins.2022.878750 [paper, repository]

Motion artifacts removal and evaluation techniques for functional near-infrared spectroscopy signals: A review.

Journal: Frontiers in neuroscience

Authors' code: YuanyuanGao216/fNIRS_denoise_by_DL (no license)

Status: code verified, 37 files readable

[41435] doi:10.3389/fnint.2022.923468 [paper, repository]

Characteristic columnar connectivity caters to cortical computation: Replication, simulation, and evaluation of a microcircuit model.

Journal: Frontiers in integrative neuroscience

Authors' code: Zenodo 4740083 (GPL-2.0), Zenodo 5752597 (other-at), Zenodo 7037649 (CC-BY-4.0)

Status: code verified, 201 files readable, 18 matches

[41436] doi:10.3389/fnint.2022.972055 [paper, repository]

Simulations of working memory spiking networks driven by short-term plasticity.

Journal: Frontiers in integrative neuroscience

Authors' code: gmtiddia/working_memory_spiking_network (GPL-3.0), gmtiddia/nest-simulator-3.1 (GPL-2.0)

Status: code verified, 925 files readable, 8 matches

[41437] doi:10.3389/fnmol.2022.1000482 [paper, data]

Obese mice induced by high-fat diet have differential expression of circular RNAs involved in endoplasmic reticulum stress and neuronal synaptic plasticity of hippocampus leading to obesity-associated cognitive impairment.

Journal: Frontiers in molecular neuroscience

Status: data only, 1 dataset cited

[41438] doi:10.3389/fphys.2022.1023528 [paper, data]

Discontinuities in understanding follicular development, the ovulatory cycle and the oviposition cycles in the hen: Advances, opportunities, slow downs and complete stops.

Journal: Frontiers in physiology

Status: data only, 9 datasets cited

[41439] doi:10.3389/fpsyg.2022.871676 [paper, data]

Perceived facial happiness during conversation correlates with insular and hypothalamus activity for humans, not robots.

Journal: Frontiers in psychology

Status: data only, 1 dataset cited

[41440] doi:10.3390/cancers14194827 [paper, repository]

Validation of MRI-Based Models to Predict MGMT Promoter Methylation in Gliomas: BraTS 2021 Radiogenomics Challenge.

Journal: Cancers

Authors' code: egyptdj/validating-cnn-mgmt (GPL-3.0)

Status: code verified, 4 files readable, 3 matches

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