Every paper, by date: page 186

44,644 papers with a page: 24,189 with their authors' code, 4,955 with code on request, 15,495 with data only. The most recent first, 224 a page. Page 186 of 200: 3 October 2022 to 26 September 2022.

Monday, 3 October 2022 (40 papers, 4 on this page)

[41441] doi:10.7150/ijbs.72982 [paper, data]

Neurotrophin3 promotes hepatocellular carcinoma apoptosis through the JNK and P38 MAPK pathways.

Journal: International journal of biological sciences

Status: data only, 1 dataset cited

[41442] doi:10.7554/elife.63600 [paper, data]

RNA-binding protein Elavl1/HuR is required for maintenance of cranial neural crest specification.

Journal: eLife

Status: data only, 1 dataset cited

[41443] doi:10.7554/elife.77029 [paper, repository]

Real time, in vivo measurement of neuronal and peripheral clocks in <i>Drosophila melanogaster</i>.

Journal: eLife

Authors' code: deniztop/LABL (no license)

Status: code verified, 3 files readable, 1 match

[41444] doi:10.7554/elife.80990 [paper, repository]

A visual sense of number emerges from divisive normalization in a simple center-surround convolutional network.

Journal: eLife

Authors' code: OSF s7xer (no license), OSF 4rwjs (no license)

Status: code verified, 26 files readable, 6 matches

Sunday, 2 October 2022 (7 papers)

[41445] doi:10.1007/s00415-022-11404-4 [paper, data]

Correlation between clinical phenotype and electromyographic parameters in amyotrophic lateral sclerosis.

Journal: Journal of neurology

Status: data only, 1 dataset cited

[41446] doi:10.1016/j.isci.2022.105255 [paper]

Neuroanatomical basis of sexual dimorphism in the mosquito brain.

Journal: iScience

Status: code on request

[41447] doi:10.1016/j.mcpro.2022.100422 [paper, data]

Deciphering Spatial Protein-Protein Interactions in Brain Using Proximity Labeling.

Journal: Molecular & cellular proteomics : MCP

Status: data only, 1 dataset cited

[41448] doi:10.1038/s41467-022-33476-6 [paper]

Self-organization of an inhomogeneous memristive hardware for sequence learning.

Journal: Nature communications

Status: code on request

[41449] doi:10.1038/s41467-022-33517-0 [paper, repository]

Schemas provide a scaffold for neocortical integration of new memories over time.

Journal: Nature communications

Authors' code: Zenodo 6980915 (other-open), saudrain/paper-scp2021 (MIT)

Status: code verified, 46 files readable, 6 matches

[41450] doi:10.1111/cns.13979 [paper]

Altered functional connectivity of nucleus accumbens subregions associates with non-motor symptoms in Parkinson's disease.

Journal: CNS neuroscience & therapeutics

Status: code on request

[41451] doi:10.3390/biology11101451 [paper, data]

CircRNA Identification and CircRNA-miRNA-mRNA Network in <i>Cynoglossus semilaevis</i> Sexual Size Dimorphism.

Journal: Biology

Status: data only, 1 dataset cited

Saturday, 1 October 2022 (67 papers)

[41452] doi:10.1016/j.cell.2022.09.025 [paper, repository]

GPC3-Unc5 receptor complex structure and role in cell migration.

Journal: Cell

Authors' code: MChavent/Hbond-analysis (no license)

Status: code verified, 1 file readable, 1 match

[41453] doi:10.1016/j.celrep.2022.111444 [paper, repository]

A non-canonical retina-ipRGCs-SCN-PVT visual pathway for mediating contagious itch behavior.

Journal: Cell reports

Authors' code: kepecslab.cshl.edu/salt.m (no license)

Status: code found, still to be checked

[41454] doi:10.1016/j.celrep.2022.111453 [paper, repository]

E-Cannula reveals anatomical diversity in sharp-wave ripples as a driver for the recruitment of distinct hippocampal assemblies.

Journal: Cell reports

Authors' code: Zenodo 7055600 (other-open), losonczylab/sima (GPL-2.0), mehrdadramezani/E-Cannula (MIT)

Status: code verified, 74 files readable, 5 matches

[41455] doi:10.1016/j.celrep.2022.111470 [paper, repository]

Midbrain dopamine neurons signal phasic and ramping reward prediction error during goal-directed navigation.

Journal: Cell reports

Authors' code: amansaleem/SaleemLab-VR (no license), Zenodo 7074768 (other-open)

Status: code verified, 483 files readable, 2 matches

[41456] doi:10.1016/j.celrep.2022.111474 [paper, repository]

Activity-dependent translation dynamically alters the proteome of the perisynaptic astrocyte process.

Journal: Cell reports

Authors' code: Zenodo 7054545 (CC-BY-4.0), Zenodo 7054911 (GPL-3.0), jdlabteam/ptz_sal (no license)

Status: code verified, 76 files readable, 5 matches

[41457] doi:10.1016/j.celrep.2022.111480 [paper]

Oligodendroglial macroautophagy is essential for myelin sheath turnover to prevent neurodegeneration and death.

Journal: Cell reports

Status: code on request

[41458] doi:10.1016/j.celrep.2022.111484 [paper]

Calcium-permeable AMPA receptors on AII amacrine cells mediate sustained signaling in the On-pathway of the primate retina.

Journal: Cell reports

Status: code on request

[41459] doi:10.1016/j.celrep.2022.111487 [paper, repository]

Visuomotor learning promotes visually evoked activity in the medial prefrontal cortex.

Journal: Cell reports

Authors' code: petersaj/Peters_et_al_CellReports_2022 (no license), Zenodo 7043441 (other-open), cortex-lab/Rigbox (GPL-3.0), cortex-lab/phy (BSD-3-Clause), petersaj/AP_histology (GPL-3.0), Julie-Fabre/bombcell (GPL-3.0)

Status: code verified, 861 files readable, 16 matches

[41460] doi:10.1016/j.celrep.2022.111488 [paper]

A systemic cell stress signal confers neuronal resilience toward oxidative stress in a Hedgehog-dependent manner.

Journal: Cell reports

Status: code on request

[41461] doi:10.1016/j.celrep.2022.111508 [paper, repository]

Genome-wide CRISPR screen reveals v-ATPase as a drug target to lower levels of ALS protein ataxin-2.

Journal: Cell reports

Authors' code: dmorgens/castle (no license)

Status: empty repository, 1 file readable

[41462] doi:10.1016/j.celrep.2022.111511 [paper]

A molecular interactome of the glioblastoma perivascular niche reveals integrin binding sialoprotein as a mediator of tumor cell migration.

Journal: Cell reports

Status: code on request

[41463] doi:10.1016/j.celrep.2022.111534 [paper]

The locus coeruleus mediates behavioral flexibility.

Journal: Cell reports

Status: code on request

[41464] doi:10.1016/j.celrep.2022.111542 [paper, repository]

A critical developmental window for ELAV/Hu-dependent mRNA signatures at the onset of neuronal differentiation.

Journal: Cell reports

Authors' code: lawremi/rtracklayer (other), Bioconductor/GenomicFeatures (no license), deeptools/deepTools (MIT), arq5x/bedtools2 (MIT), maxplanck-ie/snakepipes (no license), simon-anders/htseq (GPL-3.0), hilgers-lab/apa_target_caller (GPL-3.0)

Status: code verified, 883 files readable, 1 match

[41465] doi:10.1016/j.dib.2022.108647 [paper, data]

BIDS-structured resting-state electroencephalography (EEG) data extracted from an experimental paradigm.

Journal: Data in brief

Status: data only, 3 datasets cited

[41466] doi:10.1038/s41420-022-01179-y [paper, data]

Sevoflurane induces microRNA-18a to delay rat neurodevelopment via suppression of the RUNX1/Wnt/β-catenin axis.

Journal: Cell death discovery

Status: data only, 1 dataset cited

[41467] doi:10.1038/s41467-022-33356-z [paper, data]

Exportin 4 depletion leads to nuclear accumulation of a subset of circular RNAs.

Journal: Nature communications

Status: data only, 1 dataset cited

[41468] doi:10.1038/s41536-022-00233-8 [paper]

Clinically relevant small-molecule promotes nerve repair and visual function recovery.

Journal: NPJ Regenerative medicine

Status: code on request

[41469] doi:10.1038/s41598-022-20889-y [paper, data]

Increased Type I interferon signaling and brain endothelial barrier dysfunction in an experimental model of Alzheimer's disease.

Journal: Scientific reports

Status: data only, 1 dataset cited

[41470] doi:10.1093/brain/awac180 [paper, repository]

Regional healthy brain activity, glioma occurrence and symptomatology.

Journal: Brain : a journal of neurology

Authors' code: spin-test (no license), multinetlab-amsterdam/projects (MIT)

Status: code verified, 83 files readable, 6 matches

[41471] doi:10.1093/brain/awac193 [paper, repository]

A Mendelian randomization study investigating the causal role of inflammation on Parkinson's disease.

Journal: Brain : a journal of neurology

Authors' code: EuracBiomedicalResearch/mr.inflpd (GPL-3.0)

Status: code verified, 66 files readable

[41472] doi:10.1093/brain/awac205 [paper, data]

Sensory experience modulates the reorganization of auditory regions for executive processing.

Journal: Brain : a journal of neurology

Status: data only, 2 datasets cited

[41473] doi:10.1093/brain/awac215 [paper, data]

Recurrent de novo mutations in CLDN5 induce an anion-selective blood-brain barrier and alternating hemiplegia.

Journal: Brain : a journal of neurology

Status: data only, 3 datasets cited

[41474] doi:10.1093/cercor/bhab494 [paper, repository]

Catching wandering minds with tapping fingers: neural and behavioral insights into task-unrelated cognition.

Journal: Cerebral cortex (New York, N.Y. : 1991)

Authors' code: OSF 56fcx (no license), figshare 17022104 (CC-BY-4.0)

Status: code verified, 8 files readable, 5 matches

[41475] doi:10.1093/cercor/bhab497 [paper]

Laminar-specific functional connectivity mapping with multi-slice line-scanning fMRI.

Journal: Cerebral cortex (New York, N.Y. : 1991)

Status: code on request

[41476] doi:10.1093/cercor/bhab501 [paper, repository]

Distinct roles for the anterior temporal lobe and angular gyrus in the spatiotemporal cortical semantic network.

Journal: Cerebral cortex (New York, N.Y. : 1991)

Authors' code: rezvanfarahi/SemNet (no license)

Status: dead link

[41477] doi:10.1093/cercor/bhab507 [paper, repository]

Multiscale functional connectome abnormality predicts cognitive outcomes in subcortical ischemic vascular disease.

Journal: Cerebral cortex (New York, N.Y. : 1991)

Authors' code: thomasyeolab/cbig (MIT)

Status: code verified, 2,000 files readable, 1 match

[41478] doi:10.1093/cercor/bhab518 [paper, repository]

Cortical tracking of formant modulations derived from silently presented lip movements and its decline with age.

Journal: Cerebral cortex (New York, N.Y. : 1991)

Authors' code: OSF ndvf6 (no license)

Status: code verified, 12 files readable, 5 matches

[41479] doi:10.1093/hmg/ddac036 [paper, repository]

Longitudinal multimodal MRI characterization of a knock-in mouse model of Huntington's disease reveals early gray and white matter alterations.

Journal: Human molecular genetics

Authors' code: sammba-mri.github.io/index.html (no license)

Status: code verified

[41480] doi:10.1093/hmg/ddac104 [paper, repository]

Alpha-synuclein overexpression induces epigenomic dysregulation of glutamate signaling and locomotor pathways.

Journal: Human molecular genetics

Authors' code: samschaf/LUHMES (no license)

Status: code verified, 37 files readable, 14 matches

[41481] doi:10.1093/ibd/izab300 [paper, data]

Association Between Inflammatory Bowel Disease and Dementia: A Longitudinal Cohort Study.

Journal: Inflammatory bowel diseases

Status: data only, 1 dataset cited

[41482] doi:10.1093/ijnp/pyac037 [paper, repository]

Oxytocinergic Modulation of Stress-Associated Amygdala-Hippocampus Pathways in Humans Is Mediated by Serotonergic Mechanisms.

Journal: The international journal of neuropsychopharmacology

Authors' code: canlab/neuroimaging_pattern_masks (GPL-3.0)

Status: code verified, 344 files readable

[41483] doi:10.1093/molbev/msac175 [paper, data]

A Novel Gene Controls a New Structure: PiggyBac Transposable Element-Derived 1, Unique to Mammals, Controls Mammal-Specific Neuronal Paraspeckles.

Journal: Molecular biology and evolution

Status: data only, 1 dataset cited

[41484] doi:10.1093/nar/gkac763 [paper, repository]

High-throughput identification of RNA localization elements in neuronal cells.

Journal: Nucleic acids research

Authors' code: taliaferrolab/oligopools (no license)

Status: code verified, 17 files readable, 5 matches

[41485] doi:10.1093/nar/gkac806 [paper, repository]

A massively parallel reporter assay reveals focused and broadly encoded RNA localization signals in neurons.

Journal: Nucleic acids research

Authors' code: martinmikl/RNAloc_MPRA (no license)

Status: code verified, 3 files readable, 4 matches

[41486] doi:10.1093/nar/gkac912 [paper, data]

The regulatory landscape of multiple brain regions in outbred heterogeneous stock rats.

Journal: Nucleic acids research

Status: data only, 1 dataset cited

[41487] doi:10.1093/scan/nsac018 [paper, repository]

Prefrontal cortical thickness, emotion regulation strategy use and COVID-19 mental health.

Journal: Social cognitive and affective neuroscience

Authors' code: OSF jgtq5 (no license)

Status: code verified, 1 file readable, 1 match

[41488] doi:10.1097/md.0000000000031281 [paper, data]

Huangqi Guizhi Wuwu decoction in peripheral neurotoxicity treatment using network pharmacology and molecular docking.

Journal: Medicine

Status: data only, 1 dataset cited

[41489] doi:10.1117/1.nph.9.4.045004 [paper]

Parallel factor analysis for multidimensional decomposition of functional near-infrared spectroscopy data.

Journal: Neurophotonics

Status: code on request

[41490] doi:10.1117/1.nph.9.4.045008 [paper]

Optimal combinations of fluorescent vessel labeling and tissue clearing methods for three-dimensional visualization of vasculature.

Journal: Neurophotonics

Status: code on request

[41491] doi:10.1117/1.nph.9.4.045009 [paper, repository]

GRINtrode: a neural implant for simultaneous two-photon imaging and extracellular electrophysiology in freely moving animals.

Journal: Neurophotonics

Authors' code: restrepd (no license), ConMark/GRINtrode (no license)

Status: code verified, 10 files readable, 4 matches

[41492] doi:10.1162/netn_a_00259 [paper, repository]

Conservative significance testing of tripartite statistical relations in multivariate neural data.

Journal: Network neuroscience (Cambridge, Mass.)

Authors' code: aleksejs-fomins/conservative-tripartite-testing (no license), HelmchenLabSoftware/mesostat-dev (MIT)

Status: code verified, 170 files readable

[41493] doi:10.1162/netn_a_00260 [paper, repository]

A perturbative approach to study information communication in brain networks.

Journal: Network neuroscience (Cambridge, Mass.)

Authors' code: cbdl/netinfluence-flow (no license)

Status: code verified, 8 files readable, 6 matches

[41494] doi:10.1162/netn_a_00262 [paper, repository]

From calcium imaging to graph topology.

Journal: Network neuroscience (Cambridge, Mass.)

Authors' code: Zenodo 3672110 (other-open), dalejn/cleanbib (MIT)

Status: code verified, 14 files readable, 1 match

[41495] doi:10.1162/netn_a_00265 [paper, repository]

FiNN: A toolbox for neurophysiological network analysis.

Journal: Network neuroscience (Cambridge, Mass.)

Authors' code: neurophysiological-analysis/FiNN (GPL-3.0), neurophysiological-analysis.github.io/finn (no license)

Status: code verified, 144 files readable, 10 matches

[41496] doi:10.1162/netn_a_00266 [paper, repository]

Hypothalamic effective connectivity at rest is associated with body weight and energy homeostasis.

Journal: Network neuroscience (Cambridge, Mass.)

Authors' code: KatharinaVoigt1/spDCM_Hypo (no license)

Status: empty repository, 1 file readable

[41497] doi:10.1162/netn_a_00267 [paper, repository]

Structural connectome constrained graphical lasso for MEG partial coherence.

Journal: Network neuroscience (Cambridge, Mass.)

Authors' code: wodeyara/AdaptiveGraphicalLassoforParCoh (no license)

Status: code verified, 40 files readable, 8 matches

[41498] doi:10.1162/netn_a_00268 [paper, repository]

Pattern of frustration formation in the functional brain network.

Journal: Network neuroscience (Cambridge, Mass.)

Authors' code: majidsaberi/BrainNetFrustration (no license)

Status: code verified, 6 files readable

[41499] doi:10.1167/iovs.63.11.11 [paper, data]

Implications of Neural Plasticity in Retinal Prosthesis.

Journal: Investigative ophthalmology & visual science

Status: data only, 7 datasets cited

[41500] doi:10.1167/jov.22.11.2 [paper, data]

Motion adaptation improves acuity (but perceived size doesn't matter).

Journal: Journal of vision

Status: data only, 1 dataset cited

[41501] doi:10.1167/jov.22.11.4 [paper, repository]

Visual stream connectivity predicts assessments of image quality.

Journal: Journal of vision

Authors' code: DartmouthGrangerLab/IQA (no license)

Status: code verified, 4 files readable

[41502] doi:10.1172/jci157074 [paper, repository]

Predicting cognitive decline in Parkinson's disease using FDG-PET-based supervised learning.

Journal: The Journal of clinical investigation

Authors' code: kolabneuro.com (no license)

Status: code verified

[41503] doi:10.1186/s12864-022-08912-y [paper, data]

Transcriptomic analysis of paternal behaviors in prairie voles.

Journal: BMC genomics

Status: data only, 1 dataset cited

[41504] doi:10.1186/s12967-022-03647-6 [paper, data]

miR-1297 sensitizes glioma cells to temozolomide (TMZ) treatment through targeting adrenomedullin (ADM).

Journal: Journal of translational medicine

Status: data only, 2 datasets cited

[41505] doi:10.1210/endocr/bqac163 [paper, repository]

Dehydroepiandrosterone Supplementation Results in Varying Tissue-specific Levels of Dihydrotestosterone in Male Mice.

Journal: Endocrinology

Authors' code: Zenodo 7082262 (CC-BY-4.0)

Status: empty repository

[41506] doi:10.14336/ad.2022.0219 [paper, data]

Locomotor Hyperactivity in the Early-Stage Alzheimer's Disease-like Pathology of APP/PS1 Mice: Associated with Impaired Polarization of Astrocyte Aquaporin 4.

Journal: Aging and disease

Status: data only, 1 dataset cited

[41507] doi:10.1590/2175-8239-jbn-2020-0243 [paper, data]

Hypoparathyroidism and Fahr's syndrome: case series.

Journal: Jornal brasileiro de nefrologia

Status: data only, 2 datasets cited

[41508] doi:10.18502/ijph.v51i10.10991 [paper, data]

G Protein Coupled Receptors Potentially Involved in Oligodendrogenesis: A Gene Expression Analysis.

Journal: Iranian journal of public health

Status: data only, 1 dataset cited

[41509] doi:10.3389/fninf.2022.957255 [paper, repository]

Tracking axon initial segment plasticity using high-density microelectrode arrays: A computational study.

Journal: Frontiers in neuroinformatics

Authors' code: git.bsse.ethz.ch/srkumar/tracking-ais-plasticity.git (no license)

Status: code verified

[41510] doi:10.3390/biom12101402 [paper, repository]

Synaptic Plasticity Is Predicted by Spatiotemporal Firing Rate Patterns and Robust to In Vivo-like Variability.

Journal: Biomolecules

Authors' code: neurord/moose_nerp (no license), modeldb:267552 (no license), neurord/ajustador (no license)

Status: code verified, 590 files readable, 16 matches

[41511] doi:10.3390/bios12100814 [paper]

Investigation of Spatiotemporal Profiles of Single-Pulse TMS-Evoked Potentials with Active Stimulation Compared with a Novel Sham Condition.

Journal: Biosensors

Status: code on request

[41512] doi:10.3390/cancers14194817 [paper, data]

Nerve Density and Neuronal Biomarkers in Cancer.

Journal: Cancers

Status: data only, 3 datasets cited

[41513] doi:10.3390/diagnostics12102392 [paper, data]

An Explainable Machine Learning Pipeline for Stroke Prediction on Imbalanced Data.

Journal: Diagnostics (Basel, Switzerland)

Status: data only, 2 datasets cited

[41514] doi:10.3390/ijms231911629 [paper, data]

Metabolic Heterogeneity of Brain Tumor Cells of Proneural and Mesenchymal Origin.

Journal: International journal of molecular sciences

Status: data only, 1 dataset cited

[41515] doi:10.3390/jimaging8100269 [paper, repository]

Colorizing the Past: Deep Learning for the Automatic Colorization of Historical Aerial Images.

Journal: Journal of imaging

Authors' code: 3DOM-FBK/Hyper_U_Net (no license)

Status: code verified, 7 files readable

[41516] doi:10.4103/aam.aam_84_21 [paper]

The efficacy of new neuronal growth factor in the healing of the sciatic nerves in rabbits.

Journal: Annals of African medicine

Status: data only

[41517] doi:10.5056/jnm22093 [paper, data]

The Role of Short Chain Fatty Acids in Irritable Bowel Syndrome.

Journal: Journal of neurogastroenterology and motility

Status: data only, 2 datasets cited

[41518] doi:10.5935/0103-507x.20220261-pt [paper, data]

Effects of balanced solution on short-term outcomes in traumatic brain injury patients: a secondary analysis of the BaSICS randomized trial.

Journal: Revista Brasileira de terapia intensiva

Status: data only, 1 dataset cited

Friday, 30 September 2022 (41 papers)

[41519] doi:10.1002/hbm.26089 [paper, repository]

The human posterior cingulate, retrosplenial, and medial parietal cortex effective connectome, and implications for memory and navigation.

Journal: Human brain mapping

Authors' code: decolab/Effective-Connectivity--Hopf (no license)

Status: code verified, 21 files readable, 3 matches

[41520] doi:10.1007/s12021-022-09607-1 [paper, repository]

Automatic Cerebral Hemisphere Segmentation in Rat MRI with Ischemic Lesions via Attention-based Convolutional Neural Networks.

Journal: Neuroinformatics

Authors' code: jmlipman/MedicDeepLabv3Plus (no license)

Status: code verified, 13 files readable, 5 matches

[41521] doi:10.1016/j.isci.2022.105207 [paper, repository]

Weighted cue integration for straight-line orientation.

Journal: iScience

Authors' code: Zenodo 5724225 (other-open), refmitchell/dcidb-supplemental-repository (MIT)

Status: code verified, 58 files readable, 10 matches

[41522] doi:10.1016/j.neuroimage.2022.119656 [paper, repository]

Heritability of hippocampal functional and microstructural organisation.

Journal: NeuroImage

Authors' code: cng-lab/cngopen (MIT)

Status: code verified, 33 files readable, 3 matches

[41523] doi:10.1016/j.neuroimage.2022.119658 [paper, data]

Locus coeruleus catecholamines link neuroticism and vulnerability to tau pathology in aging.

Journal: NeuroImage

Status: data only, 1 dataset cited

[41524] doi:10.1016/j.ynstr.2022.100495 [paper, data]

Microglia-specific transcriptional repression of interferon-regulated genes after prolonged stress in mice.

Journal: Neurobiology of stress

Status: data only, 6 datasets cited

[41525] doi:10.1038/s41467-022-33484-6 [paper, repository]

Lipid biosynthesis enzyme Agpat5 in AgRP-neurons is required for insulin-induced hypoglycemia sensing and glucagon secretion.

Journal: Nature communications

Authors' code: pcanilho/fiber-photometry-analysis (no license)

Status: code verified, 10 files readable

[41526] doi:10.1038/s41467-022-33542-z [paper, repository]

Single cell and spatial transcriptomic analyses reveal microglia-plasma cell crosstalk in the brain during Trypanosoma brucei infection.

Journal: Nature communications

Authors' code: Zenodo 6387555 (CC-BY-4.0)

Status: code verified, 2 files readable, 16 matches

[41527] doi:10.1038/s41593-022-01167-6 [paper, repository]

A tool for mapping microglial morphology, morphOMICs, reveals brain-region and sex-dependent phenotypes.

Journal: Nature neuroscience

Authors' code: BlueBrain/NeuroM (BSD-3-Clause), BlueBrain/TMD (LGPL-3.0), DmitryUlyanov/Multicore-TSNE (BSD-3-Clause), dpeerlab/Palantir (MIT), cole-trapnell-lab/monocle3 (other), git.ist.ac.at/rcubero/morphomics (no license)

Status: code verified, 302 files readable, 8 matches

[41528] doi:10.1038/s41597-022-01708-5 [paper, repository]

A synchronized multimodal neuroimaging dataset for studying brain language processing.

Journal: Scientific data

Authors' code: kaldi-asr/kaldi (Apache-2.0)

Status: code verified, 2,000 files readable

[41529] doi:10.1038/s41598-022-20281-w [paper, data]

Exosomal miRNA-21 from Toxoplasma gondii-infected microglial cells induces the growth of U87 glioma cells by inhibiting tumor suppressor genes.

Journal: Scientific reports

Status: data only, 1 dataset cited

[41530] doi:10.1038/s41598-022-20487-y [paper, data]

Patient-derived tumor organoids as a platform of precision treatment for malignant brain tumors.

Journal: Scientific reports

Status: data only, 1 dataset cited

[41531] doi:10.1038/s42003-022-04018-z [paper, repository]

Extreme conditions affect neuronal oscillations of cerebral cortices in humans in the China Space Station and on Earth.

Journal: Communications biology

Authors' code: olafdimigen/opticat (no license)

Status: code verified, 17 files readable

[41532] doi:10.1038/s43856-022-00187-4 [paper]

Increased very low frequency pulsations and decreased cardiorespiratory pulsations suggest altered brain clearance in narcolepsy.

Journal: Communications medicine

Status: code on request

[41533] doi:10.1101/2022.09.29.22280521 [paper, repository]

Detecting mild traumatic brain injury with MEG, normative modelling and machine learning

Journal: medRxiv (preprint)

Authors' code: Zenodo 8360526 (CC-BY-4.0), Zenodo 8360527 (CC-BY-4.0)

Status: code verified, 106 files readable

[41534] doi:10.1101/gr.276898.122 [paper]

Physiological intron retaining transcripts in the cytoplasm abound during human motor neurogenesis.

Journal: Genome research

Status: data only

[41535] doi:10.1126/sciadv.abn7430 [paper, repository]

Modular derivation of diverse, regionally discrete human posterior CNS neurons enables discovery of transcriptomic patterns.

Journal: Science advances

Authors' code: Zenodo 6505441 (other-open), Zenodo 6506221 (other-open), Zenodo 6506151 (other-open), Zenodo 6506161 (other-open), roy-lab/sc_consensusclustering (MIT), roy-lab/clade-specific_gene_sets (no license), roy-lab/arboretum2.0 (no license)

Status: code verified, 753 files readable, 6 matches

[41536] doi:10.1126/sciadv.abp8701 [paper, repository]

Ca²⁺ channels couple spiking to mitochondrial metabolism in substantia nigra dopaminergic neurons.

Journal: Science advances

Authors' code: surmeierlab/EZT2022SA (GPL-3.0), Zenodo 6975292 (other-open)

Status: code verified, 14 files readable

[41537] doi:10.1126/sciadv.abq2423 [paper, data]

Astrocytic NDRG2-PPM1A interaction exacerbates blood-brain barrier disruption after subarachnoid hemorrhage.

Journal: Science advances

Status: data only, 2 datasets cited

[41538] doi:10.1155/2022/4667117 [paper, repository]

Multimodal MRI-Based Radiomic Nomogram for the Early Differentiation of Recurrence and Pseudoprogression of High-Grade Glioma.

Journal: BioMed research international

Authors' code: salan668/FAE (Apache-2.0)

Status: code verified, 95 files readable, 2 matches

[41539] doi:10.1155/2022/4984490 [paper, data]

Uncertainty Estimation Using Variational Mixture of Gaussians Capsule Network for Health Image Classification.

Journal: Computational intelligence and neuroscience

Status: data only, 2 datasets cited

[41540] doi:10.1155/2022/6364102 [paper, repository]

Diagnosis of Oral Squamous Cell Carcinoma Using Deep Neural Networks and Binary Particle Swarm Optimization on Histopathological Images: An AIoMT Approach.

Journal: Computational intelligence and neuroscience

Authors' code: BioScince/Oral-squamous-cell-carcinoma- (no license)

Status: dead link

[41541] doi:10.1186/s12915-022-01411-2 [paper, data]

Mutagenesis of the odorant receptor co-receptor (Orco) reveals severe olfactory defects in the crop pest moth Helicoverpa armigera.

Journal: BMC biology

Status: data only, 2 datasets cited

[41542] doi:10.1186/s12915-022-01416-x [paper, data]

Rapid and sensitive single-cell RNA sequencing with SHERRY2.

Journal: BMC biology

Status: data only, 6 datasets cited

[41543] doi:10.1186/s12967-022-03657-4 [paper, data]

Identification of SSBP1 as a ferroptosis-related biomarker of glioblastoma based on a novel mitochondria-related gene risk model and in vitro experiments.

Journal: Journal of translational medicine

Status: data only, 3 datasets cited

[41544] doi:10.1186/s13063-022-06738-3 [paper]

A randomized, double-blind, placebo-controlled, hybrid parallel-arm study of low-dose naltrexone as an adjunctive anti-inflammatory treatment for major depressive disorder.

Journal: Trials

Status: code on request

[41545] doi:10.1212/wnl.0000000000201200 [paper, repository]

Flexibility of Fast Brain Dynamics and Disease Severity in Amyotrophic Lateral Sclerosis.

Journal: Neurology

Authors' code: pierpaolosorrentino/flexibility_als (no license)

Status: code verified, 10 files readable, 2 matches

[41546] doi:10.3389/fcell.2022.985298 [paper, data]

Oxytocin promotes epicardial cell activation and heart regeneration after cardiac injury.

Journal: Frontiers in cell and developmental biology

Status: data only, 1 dataset cited

[41547] doi:10.3389/fnana.2022.894606 [paper, repository]

Anatomically curated segmentation of human subcortical structures in high resolution magnetic resonance imaging: An open science approach.

Journal: Frontiers in neuroanatomy

Authors' code: HOA-2/SubcorticalParcellations (other), PerkLab/NeuroSegmentation (BSD-3-Clause)

Status: code verified, 18 files readable

[41548] doi:10.3389/fncom.2022.1017284 [paper, repository]

Training spiking neuronal networks to perform motor control using reinforcement and evolutionary learning.

Journal: Frontiers in computational neuroscience

Authors' code: NathanKlineInstitute/netpyne-STDP (no license)

Status: code verified, 57 files readable, 14 matches

[41549] doi:10.3389/fneur.2022.1005670 [paper, data]

Clinical and genetic characterization of a Taiwanese cohort with spastic paraparesis combined with cerebellar involvement.

Journal: Frontiers in neurology

Status: data only, 1 dataset cited

[41550] doi:10.3389/fnhum.2022.943976 [paper, data]

Electrophysiological indices of pain expectation abnormalities in fibromyalgia patients.

Journal: Frontiers in human neuroscience

Status: data only, 1 dataset cited

[41551] doi:10.3389/fnhum.2022.944543 [paper, repository]

A hybrid learning framework for fine-grained interpretation of brain spatiotemporal patterns during naturalistic functional magnetic resonance imaging.

Journal: Frontiers in human neuroscience

Authors' code: canlab/CanlabCore (GPL-2.0)

Status: code verified, 2,000 files readable, 2 matches

[41552] doi:10.3389/fphar.2022.966760 [paper, data]

Characterization of exogenous αSN response genes and their relation to Parkinson's disease using network analyses.

Journal: Frontiers in pharmacology

Status: data only, 2 datasets cited

[41553] doi:10.3390/biomedicines10102449 [paper, data]

Activity of a Novel Anti-Inflammatory Agent F-3,6'-dithiopomalidomide as a Treatment for Traumatic Brain Injury.

Journal: Biomedicines

Status: data only, 1 dataset cited

[41554] doi:10.3390/cancers14194810 [paper, data]

Preclinical Efficacy and Toxicology Evaluation of RAC1 Inhibitor 1A-116 in Human Glioblastoma Models.

Journal: Cancers

Status: data only, 10 datasets cited

[41555] doi:10.3390/cimb44100314 [paper, data]

Implications of Microorganisms in Alzheimer's Disease.

Journal: Current issues in molecular biology

Status: data only, 1 dataset cited

[41556] doi:10.3390/ijms231911581 [paper, repository]

An Integrative Analysis of Identified Schizophrenia-Associated Brain Cell Types and Gene Expression Changes.

Journal: International journal of molecular sciences

Authors' code: CWENXIANG/SCZ-scRNA-seq-analysis (no license)

Status: empty repository, 1 file readable

[41557] doi:10.3390/molecules27196453 [paper, repository]

Adera2.0: A Drug Repurposing Workflow for Neuroimmunological Investigations Using Neural Networks.

Journal: Molecules (Basel, Switzerland)

Authors' code: michel-phylo/ADERA2.0 (MIT)

Status: code verified, 10 files readable

[41558] doi:10.5334/joc.239 [paper, repository]

Computational Investigations of Learning and Synchronization in Cognitive Control.

Journal: Journal of cognition

Authors' code: phuycke/theta_learning_syncing (no license), Zenodo 5884290 (no license)

Status: empty repository, 1 file readable

[41559] doi:10.7554/elife.78772 [paper, repository]

Protein evidence of unannotated ORFs in <i>Drosophila</i> reveals diversity in the evolution and properties of young proteins.

Journal: eLife

Authors' code: LiZhaoLab/utORF_mass_spec (no license)

Status: code verified, 6 files readable, 6 matches

Thursday, 29 September 2022 (32 papers)

[41560] doi:10.1002/hbm.26079 [paper, repository]

White matter microstructure shows sex differences in late childhood: Evidence from 6797 children.

Journal: Human brain mapping

Authors' code: nitrc.org/projects/abcd_study (no license)

Status: code verified

[41561] doi:10.1016/j.isci.2022.105246 [paper]

Magnetoencephalographic spectral fingerprints differentiate evidence accumulation from saccadic motor preparation in perceptual decision-making.

Journal: iScience

Status: code on request

[41562] doi:10.1016/j.isci.2022.105250 [paper, repository]

SPECT/CT imaging reveals CNS-wide modulation of glymphatic cerebrospinal fluid flow by systemic hypertonic saline.

Journal: iScience

Authors' code: figshare 21150415 (CC-BY-4.0)

Status: code verified, 3 files readable, 2 matches

[41563] doi:10.1016/j.resplu.2022.100311 [paper, data]

Suction cup on a piston-based chest compression device improves coronary perfusion pressure and cerebral oxygenation during experimental cardiopulmonary resuscitation.

Journal: Resuscitation plus

Status: data only, 2 datasets cited

[41564] doi:10.1016/j.stemcr.2022.08.013 [paper]

TGFβ superfamily signaling regulates the state of human stem cell pluripotency and capacity to create well-structured telencephalic organoids.

Journal: Stem cell reports

Status: data only

[41565] doi:10.1016/j.stemcr.2022.09.001 [paper, repository]

High-content phenotyping of Parkinson's disease patient stem cell-derived midbrain dopaminergic neurons using machine learning classification.

Journal: Stem cell reports

Authors' code: johanneswilbertz/mDA-neuron-classification (no license)

Status: code verified, 11 files readable

[41566] doi:10.1038/s41531-022-00391-y [paper]

High PSQI score is associated with the development of dyskinesia in Parkinson's disease.

Journal: NPJ Parkinson's disease

Status: code on request

[41567] doi:10.1038/s41598-022-19219-z [paper, data]

Colitis-associated intestinal microbiota regulates brain glycine and host behavior in mice.

Journal: Scientific reports

Status: data only, 1 dataset cited

[41568] doi:10.1038/s41598-022-20068-z [paper]

Spontaneous activity in whisker-innervating region of neonatal mouse trigeminal ganglion.

Journal: Scientific reports

Status: code on request

[41569] doi:10.1038/s41598-022-20460-9 [paper, data]

Deep language algorithms predict semantic comprehension from brain activity.

Journal: Scientific reports

Status: data only, 1 dataset cited

[41570] doi:10.1038/s41598-022-20682-x [paper, data]

DNA methylation landscapes from pig's limbic structures underline regulatory mechanisms relevant for brain plasticity.

Journal: Scientific reports

Status: data only, 2 datasets cited

[41571] doi:10.1038/s42003-022-04002-7 [paper, data]

Human thymoma-associated mutation of the GTF2I transcription factor impairs thymic epithelial progenitor differentiation in mice.

Journal: Communications biology

Status: data only, 1 dataset cited

[41572] doi:10.1093/pnasnexus/pgac206 [paper, repository]

Adaptive cognition implemented with a context-aware and flexible neuron for next-generation artificial intelligence.

Journal: PNAS nexus

Authors' code: Zenodo 7097387 (other-open), liukts/skyrmioncomputingnn (no license)

Status: code verified, 26 files readable

[41573] doi:10.1128/spectrum.02508-22 [paper, data]

Distinct HIV-1 Population Structure across Meningeal and Peripheral T Cells and Macrophage Lineage Cells.

Journal: Microbiology spectrum

Status: data only, 1 dataset cited

[41574] doi:10.1186/s10194-022-01495-9 [paper]

Synaptic alterations in visual cortex reshape contrast-dependent gamma oscillations and inhibition-excitation ratio in a genetic mouse model of migraine.

Journal: The journal of headache and pain

Status: code on request

[41575] doi:10.1186/s12859-022-04946-x [paper, data]

Deep multiview learning to identify imaging-driven subtypes in mild cognitive impairment.

Journal: BMC bioinformatics

Status: data only, 1 dataset cited

[41576] doi:10.1186/s12864-022-08879-w [paper, data]

A conserved transcriptional fingerprint of multi-neurotransmitter neurons necessary for social behavior.

Journal: BMC genomics

Status: data only, 1 dataset cited

[41577] doi:10.1371/journal.pcbi.1010556 [paper, repository]

Estimation of the firing behaviour of a complete motoneuron pool by combining electromyography signal decomposition and realistic motoneuron modelling.

Journal: PLoS computational biology

Authors' code: ArnaultCAILLET/Caillet-et-al-2022-PLOS_Comput_Biol (no license)

Status: code verified, 32 files readable, 10 matches

[41578] doi:10.1371/journal.pone.0273704 [paper, repository]

Reliability of multi-site UK Biobank MRI brain phenotypes for the assessment of neuropsychiatric complications of SARS-CoV-2 infection: The COVID-CNS travelling heads study.

Journal: PloS one

Authors' code: fmrib.ox.ac.uk/ukbiobank/fbp (no license), fmrib.ox.ac.uk/ukbiobank/covid (no license)

Status: code verified

[41579] doi:10.1371/journal.pone.0274226 [paper, repository]

Distinct mechanisms underlie H2O2 sensing in C. elegans head and tail.

Journal: PloS one

Authors' code: gcharvin/viewworm (GPL-3.0)

Status: code verified, 9 files readable, 1 match

[41580] doi:10.1523/eneuro.0160-22.2022 [paper, repository]

Improved Manual Annotation of EEG Signals through Convolutional Neural Network Guidance.

Journal: eNeuro

Authors' code: dmari104/CNN-EEG (MIT)

Status: code verified, 1,519 files readable, 14 matches

[41581] doi:10.3389/fendo.2022.972115 [paper, data]

The role of GABA in islet function.

Journal: Frontiers in endocrinology

Status: data only, 7 datasets cited

[41582] doi:10.3389/fgene.2022.997970 [paper, data]

REV1: A novel biomarker and potential therapeutic target for various cancers.

Journal: Frontiers in genetics

Status: data only, 1 dataset cited

[41583] doi:10.3389/fimmu.2022.1012594 [paper, data]

cGAS/STING and innate brain inflammation following acute high-fat feeding.

Journal: Frontiers in immunology

Status: data only, 2 datasets cited

[41584] doi:10.3389/fnins.2022.1007736 [paper, repository]

Adaptive control of a wheelchair mounted robotic arm with neuromorphically integrated velocity readings and online-learning.

Journal: Frontiers in neuroscience

Authors' code: NBELab/Adaptive_arm_control (no license)

Status: code verified, 7 files readable, 5 matches

[41585] doi:10.3389/fnins.2022.944262 [paper, repository]

EvtSNN: Event-driven SNN simulator optimized by population and pre-filtering.

Journal: Frontiers in neuroscience

Authors' code: BindsNET/bindsnet (AGPL-3.0)

Status: code verified, 118 files readable, 1 match

[41586] doi:10.3389/fnins.2022.945594 [paper, repository]

Focal electrical stimulation on an alcohol disorder model using magnetic resonance imaging-compatible chronic neural monopolar carbon fiber electrodes.

Journal: Frontiers in neuroscience

Authors' code: CoBrALab/RABIES (other)

Status: code verified, 54 files readable, 2 matches

[41587] doi:10.3390/brainsci12101325 [paper, repository]

Transcranial Direct-Current Stimulation Does Not Affect Implicit Sensorimotor Adaptation: A Randomized Sham-Controlled Trial.

Journal: Brain sciences

Authors' code: HJWangOrder66/Motor-learning-with-tDCS (no license)

Status: code verified, 16 files readable

[41588] doi:10.3390/s22197426 [paper]

Characterization of Infants' General Movements Using a Commercial RGB-Depth Sensor and a Deep Neural Network Tracking Processing Tool: An Exploratory Study.

Journal: Sensors (Basel, Switzerland)

Status: code on request

[41589] doi:10.7554/elife.74463 [paper, repository]

Functional brain reconfiguration during sustained pain.

Journal: eLife

Authors' code: cocoanlab/surface_preprocessing (no license), cocoanlab/brain_reconfig_pain (MIT), canlab/CanlabCore (GPL-2.0), cocoanlab/cocoanCORE (GPL-3.0)

Status: code verified, 2,162 files readable, 17 matches

[41590] doi:10.7554/elife.76635 [paper, repository]

Putting perception into action with inverse optimal control for continuous psychophysics.

Journal: eLife

Authors' code: RothkopfLab/lqg (AGPL-3.0)

Status: code verified, 36 files readable, 2 matches

[41591] doi:10.7554/elife.77748 [paper, repository]

Olfactory responses of <i>Drosophila</i> are encoded in the organization of projection neurons.

Journal: eLife

Authors' code: supp:PMC9616568/elife-77748-data1.zip (no license)

Status: code verified, 7 files readable, 8 matches

Wednesday, 28 September 2022 (44 papers)

[41592] doi:10.1002/hbm.26090 [paper, data]

Multisensory representations of space and time in sensory cortices.

Journal: Human brain mapping

Status: data only, 1 dataset cited

[41593] doi:10.1007/s40120-022-00407-y [paper, data]

Integrative Analyses Identify KCNJ15 as a Candidate Gene in Patients with Epilepsy.

Journal: Neurology and therapy

Status: data only, 1 dataset cited

[41594] doi:10.1016/j.isci.2022.105229 [paper]

Cortical contributions to locomotor primitives in toddlers and adults.

Journal: iScience

Status: code on request

[41595] doi:10.1016/j.isci.2022.105232 [paper]

Altered low-frequency brain rhythms precede changes in gamma power during tauopathy.

Journal: iScience

Status: code on request

[41596] doi:10.1016/j.isci.2022.105233 [paper]

The proprotein convertase furin regulates the development of thymic epithelial cells to ensure central immune tolerance.

Journal: iScience

Status: code on request

[41597] doi:10.1016/j.trip.2022.100693 [paper, repository]

Real-time social distance measurement and face mask detection in public transportation systems during the COVID-19 pandemic and post-pandemic Era: Theoretical approach and case study in Italy.

Journal: Transportation research interdisciplinary perspectives

Authors' code: AIZOOTech/FaceMaskDetection (MIT), kaggle.com/andrewmvd/face-mask-detection (no license)

Status: code verified, 29 files readable

[41598] doi:10.1038/s41467-022-32617-1 [paper, repository]

Regional gene expression signatures are associated with sex-specific functional connectivity changes in depression.

Journal: Nature communications

Authors' code: jmmonteiro/spls (GPL-2.0), frantisekvasa/rotate_parcellation (MIT), AlexTalishinsky/Sex_Dimorphic_Depression_rsFC_Gene_Correlates (no license), Zenodo 6825246 (other-open)

Status: code verified, 17 files readable, 6 matches

[41599] doi:10.1038/s41467-022-33382-x [paper, data]

Lesion environments direct transplanted neural progenitors towards a wound repair astroglial phenotype in mice.

Journal: Nature communications

Status: data only, 1 dataset cited

[41600] doi:10.1038/s41593-022-01149-8 [paper, repository]

Complementary task representations in hippocampus and prefrontal cortex for generalizing the structure of problems.

Journal: Nature neuroscience

Authors' code: veronikasamborska1994/notebooks_paper (no license)

Status: code verified, 23 files readable, 20 matches

[41601] doi:10.1038/s41593-022-01168-5 [paper, repository]

Awake perception is associated with dedicated neuronal assemblies in the cerebral cortex.

Journal: Nature neuroscience

Authors' code: Zenodo 6802671 (CC-BY-4.0), Einwohner/Neuronal-assemblies-analysis (no license)

Status: code verified, 14 files readable, 6 matches

[41602] doi:10.1038/s41593-022-01170-x [paper, data]

Oligodendrocyte precursor cells engulf synapses during circuit remodeling in mice.

Journal: Nature neuroscience

Status: data only, 16 datasets cited

[41603] doi:10.1038/s41593-022-01171-w [paper, repository]

Thalamus-driven functional populations in frontal cortex support decision-making.

Journal: Nature neuroscience

Authors' code: NuoLiLabBCM/YangEtAl2022_code_activity_modes (MIT)

Status: code verified, 19 files readable, 5 matches

[41604] doi:10.1038/s41598-022-20106-w [paper, data]

Pseudotime analysis reveals novel regulatory factors for multigenic onset and monogenic transition of odorant receptor expression.

Journal: Scientific reports

Status: data only, 1 dataset cited

[41605] doi:10.1038/s41598-022-20322-4 [paper, repository]

An evaluation of how connectopic mapping reveals visual field maps in V1.

Journal: Scientific reports

Authors' code: OSF 5vupk (no license)

Status: code verified, 41 files readable, 36 matches

[41606] doi:10.1038/s41598-022-20704-8 [paper, repository]

Task-related, intrinsic oscillatory and aperiodic neural activity predict performance in naturalistic team-based training scenarios.

Journal: Scientific reports

Authors' code: OSF zmqt2 (no license)

Status: code verified

[41607] doi:10.1093/pnasnexus/pgac216 [paper, repository]

Associations between abstract working memory abilities and brain activity underlying long-term recognition of auditory sequences.

Journal: PNAS nexus

Authors' code: gemmaferu/MEG-auditory-memory (no license), leonardob92/LBPD-1.0 (GPL-3.0)

Status: code verified, 168 files readable, 9 matches

[41608] doi:10.1098/rsob.220187 [paper, repository]

Familial ALS-associated <i>SFPQ</i> variants promote the formation of SFPQ cytoplasmic aggregates in primary neurons.

Journal: Open biology

Authors' code: doi:10.6084/m9.figshare.c.6198497 (no license)

Status: code found, still to be checked

[41609] doi:10.1098/rspb.2022.1398 [paper, data]

Fossil basicranium clarifies the origin of the avian central nervous system and inner ear.

Journal: Proceedings. Biological sciences

Status: data only, 3 datasets cited

[41610] doi:10.1101/2022.09.27.509783 [paper, repository]

Inter-gastruloid heterogeneity revealed by single cell transcriptomics time course: implications for organoid based perturbation studies

Journal: bioRxiv (preprint)

Authors' code: marionilab.github.io/extendedmouseatlas (no license)

Status: code verified

[41611] doi:10.1126/sciadv.abo3991 [paper, repository]

Sex-specific epigenetic development in the mouse hypothalamic arcuate nucleus pinpoints human genomic regions associated with body mass index.

Journal: Science advances

Authors' code: bulik/ldsc (GPL-3.0), Zenodo 6517177 (CC-BY-4.0)

Status: code verified, 134 files readable, 10 matches

[41612] doi:10.1126/sciadv.abo4662 [paper, data]

Neurons burdened by DNA double-strand breaks incite microglia activation through antiviral-like signaling in neurodegeneration.

Journal: Science advances

Status: data only, 1 dataset cited

[41613] doi:10.1126/sciadv.abo5578 [paper, repository]

The long noncoding RNA <i>mimi</i> scaffolds neuronal granules to maintain nervous system maturity.

Journal: Science advances

Authors' code: Zenodo 6660565 (other-open)

Status: code verified, 3 files readable, 1 match

[41614] doi:10.1186/s12859-022-04942-1 [paper, repository]

Neural representations of cryo-EM maps and a graph-based interpretation.

Journal: BMC bioinformatics

Authors' code: DrDongSi/Neural-EM-Map (other)

Status: code verified, 10 files readable, 14 matches

[41615] doi:10.1186/s12859-022-04947-w [paper, repository]

Identifying genes associated with brain volumetric differences through tissue specific transcriptomic inference from GWAS summary data.

Journal: BMC bioinformatics

Authors' code: hakyimlab/MetaXcan (MIT)

Status: code verified, 124 files readable, 1 match

[41616] doi:10.1186/s12868-022-00740-w [paper, data]

Enhanced autophagy interacting proteins negatively correlated with the activation of apoptosis-related caspase family proteins after focal ischemic stroke of young rats.

Journal: BMC neuroscience

Status: data only, 1 dataset cited

[41617] doi:10.1186/s12868-022-00743-7 [paper, data]

Identification of a hippocampal lncRNA-regulating network in a natural aging rat model.

Journal: BMC neuroscience

Status: data only, 2 datasets cited

[41618] doi:10.1371/journal.pcbi.1010421 [paper, repository]

Correcting motion induced fluorescence artifacts in two-channel neural imaging.

Journal: PLoS computational biology

Authors' code: Nondairy-Creamer/tmac (MIT)

Status: code verified, 11 files readable, 4 matches

[41619] doi:10.1371/journal.pone.0271915 [paper, data]

Obesity and acute stress modulate appetite and neural responses in food word reactivity task.

Journal: PloS one

Status: data only, 1 dataset cited

[41620] doi:10.1371/journal.pone.0274220 [paper, data]

CVR-MRICloud: An online processing tool for CO2-inhalation and resting-state cerebrovascular reactivity (CVR) MRI data.

Journal: PloS one

Status: data only, 1 dataset cited

[41621] doi:10.14348/molcells.2022.2042 [paper, data]

The Kleisin Subunits of Cohesin are Involved in the Fate Determination of Embryonic Stem Cells.

Journal: Molecules and cells

Status: data only, 1 dataset cited

[41622] doi:10.1523/eneuro.0117-22.2022 [paper, repository]

The Genomic Architecture of Pregnancy-Associated Plasticity in the Maternal Mouse Hippocampus.

Journal: eNeuro

Authors' code: indrops/indrops (no license)

Status: code verified, 7 files readable

[41623] doi:10.1523/eneuro.0224-22.2022 [paper, repository]

Pi USB Cam: A Simple and Affordable DIY Solution That Enables High-Quality, High-Throughput Video Capture for Behavioral Neuroscience Research.

Journal: eNeuro

Authors' code: raspberrypi/documentation (CC-BY-4.0), obsproject/obs-studio (GPL-2.0)

Status: code verified, 1,450 files readable

[41624] doi:10.23736/s1973-9087.22.07522-0 [paper, data]

The Early Functional Abilities-revised may bridge the gap between the disorder of consciousness and the functional independence scales: evidence from Rasch analysis.

Journal: European journal of physical and rehabilitation medicine

Status: data only, 1 dataset cited

[41625] doi:10.3389/fdata.2022.793606 [paper]

Application of multiple testing procedures for identifying relevant comorbidities, from a large set, in traumatic brain injury for research applications utilizing big health-administrative data.

Journal: Frontiers in big data

Status: code on request

[41626] doi:10.3389/fmed.2022.933037 [paper, data]

Explainable time-series deep learning models for the prediction of mortality, prolonged length of stay and 30-day readmission in intensive care patients.

Journal: Frontiers in medicine

Status: data only, 2 datasets cited

[41627] doi:10.3389/fncel.2022.972144 [paper, data]

Transcriptional abnormalities in induced pluripotent stem cell-derived oligodendrocytes of individuals with primary progressive multiple sclerosis.

Journal: Frontiers in cellular neuroscience

Status: data only, 1 dataset cited

[41628] doi:10.3389/fninf.2022.1006532 [paper, repository]

Accurate segmentation of neonatal brain MRI with deep learning.

Journal: Frontiers in neuroinformatics

Authors' code: richterleo/Neonatal_Brain_Segmentation (no license)

Status: code verified, 15 files readable, 9 matches

[41629] doi:10.3389/fnins.2022.957282 [paper, repository]

Incorporation of spatial- and connectivity-based cortical brain region information in regularized regression: Application to Human Connectome Project data.

Journal: Frontiers in neuroscience

Authors' code: pypi.org/project/surfdist (no license), pypi.org/project/nibabel (no license)

Status: code verified

[41630] doi:10.3389/fphar.2022.941656 [paper]

Landscape of immune infiltration in entorhinal cortex of patients with Alzheimer's disease.

Journal: Frontiers in pharmacology

Status: data only

[41631] doi:10.7554/elife.65495 [paper, data]

Time encoding migrates from prefrontal cortex to dorsal striatum during learning of a self-timed response duration task.

Journal: eLife

Status: data only, 1 dataset cited

[41632] doi:10.7554/elife.76926 [paper, repository]

Functional gradients in the human lateral prefrontal cortex revealed by a comprehensive coordinate-based meta-analysis.

Journal: eLife

Authors' code: NeuroLang/NeuroLang (BSD-3-Clause), majdabd/lpfc_gradients-meta-analysis (no license)

Status: code verified, 413 files readable, 12 matches

[41633] doi:10.7554/elife.77628 [paper, data]

Ear pinnae in a neotropical katydid (Orthoptera: Tettigoniidae) function as ultrasound guides for bat detection.

Journal: eLife

Status: data only, 1 dataset cited

[41634] doi:10.7554/elife.78300 [paper, repository]

A dynamic and expandable digital 3D-atlas maker for monitoring the temporal changes in tissue growth during hindbrain morphogenesis.

Journal: eLife

Authors' code: cristinapujades/Blanc-et-al.-2022 (no license)

Status: code verified, 3 files readable

[41635] doi:10.7554/elife.80368 [paper, data]

Flexing the principal gradient of the cerebral cortex to suit changing semantic task demands.

Journal: eLife

Status: data only, 2 datasets cited

Tuesday, 27 September 2022 (17 papers)

[41636] doi:10.1016/j.isci.2022.105228 [paper]

Dorsal raphe nucleus to pre-Bötzinger complex serotonergic neural circuit is involved in seizure-induced respiratory arrest.

Journal: iScience

Status: code on request

[41637] doi:10.1038/s41467-022-33226-8 [paper, data]

Rejuvenation of the aged brain immune cell landscape in mice through p16-positive senescent cell clearance.

Journal: Nature communications

Status: code on request, 2 datasets cited

[41638] doi:10.1038/s41598-022-18529-6 [paper, repository]

Dorsolateral prefrontal cortex plays causal role in probability weighting during risky choice.

Journal: Scientific reports

Authors' code: neuroexperiments/risky_choice_DLPFC_TMS (no license)

Status: code verified, 6 files readable, 1 match

[41639] doi:10.1038/s42003-022-03963-z [paper, repository]

Multiscale neural gradients reflect transdiagnostic effects of major psychiatric conditions on cortical morphology.

Journal: Communications biology

Authors' code: MICA-MNI/BrainSpace (BSD-3-Clause), caseypaquola/BigBrainWarp (other), MICA-MNI/ENIGMA (BSD-3-Clause)

Status: code verified, 294 files readable, 3 matches

[41640] doi:10.1101/gr.276591.122 [paper]

Identification of a transcriptional signature found in multiple models of ASD and related disorders.

Journal: Genome research

Status: data only

[41641] doi:10.1109/tuffc.2022.3198522 [paper, repository]

Classical and Learned MR to Pseudo-CT Mappings for Accurate Transcranial Ultrasound Simulation.

Journal: IEEE transactions on ultrasonics, ferroelectrics, and frequency control

Authors' code: ucl-bug/transcranial-ultrasound-benchmarks (LGPL-3.0)

Status: code verified, 29 files readable, 2 matches

[41642] doi:10.1111/ejn.15823 [paper, repository]

Domain-specific and domain-general neural network engagement during human-robot interactions.

Journal: The European journal of neuroscience

Authors' code: human-plus/fchri (no license)

Status: code verified, 17 files readable, 8 matches

[41643] doi:10.1113/jp283381 [paper, data]

Effects of short-term unloading and active recovery on human motor unit properties, neuromuscular junction transmission and transcriptomic profile.

Journal: The Journal of physiology

Status: data only, 1 dataset cited

[41644] doi:10.3389/fcell.2022.952832 [paper]

Hyperactivation of mTORC1 in a double hit mutant zebrafish model of tuberous sclerosis complex causes increased seizure susceptibility and neurodevelopmental abnormalities.

Journal: Frontiers in cell and developmental biology

Status: data only

[41645] doi:10.3389/fonc.2022.963096 [paper, data]

Hepcidin is upregulated and is a potential therapeutic target associated with immunity in glioma.

Journal: Frontiers in oncology

Status: data only, 1 dataset cited

[41646] doi:10.3390/brainsci12101300 [paper, data]

Music and Visual Art Training Increase Auditory-Evoked Theta Oscillations in Older Adults.

Journal: Brain sciences

Status: data only, 1 dataset cited

[41647] doi:10.3390/cells11193027 [paper, data]

Mechanistic Understanding of the Olfactory Neuroepithelium Involvement Leading to Short-Term Anosmia in COVID-19 Using the Adverse Outcome Pathway Framework.

Journal: Cells

Status: data only, 1 dataset cited

[41648] doi:10.3390/jimaging8100262 [paper, repository]

GUBS: Graph-Based Unsupervised Brain Segmentation in MRI Images.

Journal: Journal of imaging

Authors' code: simeonmayala/GUBS-Brain-segmentation (no license)

Status: code verified, 12 files readable, 2 matches

[41649] doi:10.3390/s22197314 [paper, data]

Adaptable and Robust EEG Bad Channel Detection Using Local Outlier Factor (LOF).

Journal: Sensors (Basel, Switzerland)

Status: data only, 2 datasets cited

[41650] doi:10.7554/elife.74242 [paper, data]

Quantitative MRI reveals differences in striatal myelin in children with DLD.

Journal: eLife

Status: data only, 2 datasets cited

[41651] doi:10.7554/elife.76835 [paper, data]

Insulin sensitivity in mesolimbic pathways predicts and improves with weight loss in older dieters.

Journal: eLife

Status: data only, 1 dataset cited

[41652] doi:10.7554/elife.79303 [paper, data]

Conduction velocity along a key white matter tract is associated with autobiographical memory recall ability.

Journal: eLife

Status: data only, 1 dataset cited

Monday, 26 September 2022 (26 papers, 12 on this page)

[41653] doi:10.1002/hbm.26087 [paper, repository]

Segregation, integration and balance in resting-state brain functional networks associated with bipolar disorder symptoms.

Journal: Human brain mapping

Authors' code: TobousRong/bipolar-disorder (no license)

Status: code verified, 8 files readable, 3 matches

[41654] doi:10.1016/j.isci.2022.105033 [paper]

A long-snouted and long-necked polycotylid plesiosaur from the Late Cretaceous of North America.

Journal: iScience

Status: code on request

[41655] doi:10.1016/j.isci.2022.105216 [paper, repository]

Zebrafish neuromesodermal progenitors undergo a critical state transition <i>in vivo</i>.

Journal: iScience

Authors' code: Zenodo 7053174 (other-open), dillansaunders/zebreg (no license)

Status: code verified, 46 files readable, 7 matches

[41656] doi:10.1038/s41467-022-32761-8 [paper, repository]

Classical center-surround receptive fields facilitate novel object detection in retinal bipolar cells.

Journal: Nature communications

Authors' code: PolegPolskyLab/BipolarClustering (MIT), Zenodo 6814522 (other-open)

Status: code verified, 8 files readable

[41657] doi:10.1038/s41467-022-33119-w [paper]

A neuro-computational account of procrastination behavior.

Journal: Nature communications

Status: code on request

[41658] doi:10.1038/s41467-022-33184-1 [paper, repository]

Single cell atlas of spinal cord injury in mice reveals a pro-regenerative signature in spinocerebellar neurons.

Journal: Nature communications

Authors' code: ArielLevineLabNINDS/CellCounter (no license), ijhua/pixel_counts (no license), neurorestore/Augur (MIT), Zenodo 6967482 (other-open)

Status: code verified, 18 files readable, 2 matches

[41659] doi:10.1038/s41587-022-01450-8 [paper, repository]

Real-time denoising enables high-sensitivity fluorescence time-lapse imaging beyond the shot-noise limit.

Journal: Nature biotechnology

Authors' code: cabooster.github.io/deepcad-rt (no license), cabooster/DeepCAD-RT (GPL-3.0)

Status: code verified, 15 files readable, 5 matches

[41660] doi:10.1038/s42003-022-03979-5 [paper]

Striatal D1 and D2 receptor availability are selectively associated with eye-blink rates after methylphenidate treatment.

Journal: Communications biology

Status: code on request

[41661] doi:10.1073/pnas.2120581119 [paper, repository]

Divisive normalization is an efficient code for multivariate Pareto-distributed environments.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: LabForComputationalVision/matlabPyrTools (MIT), stefan-f-bucher/divisive-normalization-efficiency (no license)

Status: code verified, 115 files readable, 6 matches

[41662] doi:10.1073/pnas.2122552119 [paper, repository]

Combining CRISPR-Cas9 and brain imaging to study the link from genes to molecules to networks.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: doi:10.5061/dryad.zw3r228bb (no license)

Status: code verified

[41663] doi:10.1073/pnas.2200400119 [paper, repository]

Neural signature of flexible coding in prefrontal cortex.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: OSF fmxs4 (no license)

Status: code verified, 10 files readable, 4 matches

[41664] doi:10.1073/pnas.2200638119 [paper, repository]

Using neuroimaging genomics to investigate the evolution of human brain structure.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: galagoz/cortical-evo (MIT)

Status: code verified, 84 files readable, 8 matches

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