Every paper, by date: page 187

44,644 papers with a page: 24,189 with their authors' code, 4,955 with code on request, 15,495 with data only. The most recent first, 224 a page. Page 187 of 200: 26 September 2022 to 15 September 2022.

Monday, 26 September 2022 (26 papers, 14 on this page)

[41665] doi:10.1073/pnas.2201657119 [paper, repository]

Hippocampal ripples signal contextually mediated episodic recall.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: memory.psych.upenn.edu/files/pubs (no license)

Status: code found, still to be checked

[41666] doi:10.1073/pnas.2202564119 [paper, repository]

Dynamic and stable population coding of attentional instructions coexist in the prefrontal cortex.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: gregorioulab/PNAS2022 (GPL-3.0)

Status: code verified, 19 files readable

[41667] doi:10.1073/pnas.2204509119 [paper, data]

Siponimod ameliorates metabolic oligodendrocyte injury via the sphingosine-1 phosphate receptor 5.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 1 dataset cited

[41668] doi:10.1073/pnas.2206450119 [paper, repository]

Highly sensitive single-cell chromatin accessibility assay and transcriptome coassay with METATAC.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: sunneyxielab/METATAC_pipeline (no license)

Status: code verified, 8 files readable, 1 match

[41669] doi:10.1093/braincomms/fcac245 [paper, data]

Blood-brain barrier leakage and perivascular inflammation in cerebral amyloid angiopathy.

Journal: Brain communications

Status: data only, 1 dataset cited

[41670] doi:10.1186/s12871-022-01810-6 [paper, data]

Dexmedetomidine pretreatment alleviates ropivacaine-induced neurotoxicity via the miR-10b-5p/BDNF axis.

Journal: BMC anesthesiology

Status: data only, 1 dataset cited

[41671] doi:10.1186/s13059-022-02772-1 [paper, repository]

Whole-genome sequencing reveals the genetic mechanisms of domestication in classical inbred mice.

Journal: Genome biology

Authors' code: deepmind/alphafold (Apache-2.0)

Status: code verified, 101 files readable, 1 match

[41672] doi:10.3389/fneur.2022.886887 [paper, data]

<i>ANXA11</i> mutations are associated with amyotrophic lateral sclerosis-frontotemporal dementia.

Journal: Frontiers in neurology

Status: data only, 1 dataset cited

[41673] doi:10.3389/fneur.2022.939640 [paper, data]

Toward individualized medicine in stroke-The TiMeS project: Protocol of longitudinal, multi-modal, multi-domain study in stroke.

Journal: Frontiers in neurology

Status: data only, 1 dataset cited

[41674] doi:10.3389/fnins.2022.982541 [paper, repository]

Epileptic seizure prediction using successive variational mode decomposition and transformers deep learning network.

Journal: Frontiers in neuroscience

Authors' code: kaggle.com/competitions/seizure-prediction (no license), matlab-deep-learning/transformer-models (BSD-2-Clause)

Status: code verified, 94 files readable, 3 matches

[41675] doi:10.3390/brainsci12101294 [paper, data]

Human-in-the-Loop Optimization of Transcranial Electrical Stimulation at the Point of Care: A Computational Perspective.

Journal: Brain sciences

Status: data only, 1 dataset cited

[41676] doi:10.3390/cells11193000 [paper, data]

Identification of an Immune-Related Prognostic Signature for Glioblastoma by Comprehensive Bioinformatics and Experimental Analyses.

Journal: Cells

Status: data only, 1 dataset cited

[41677] doi:10.3390/ijms231911358 [paper, data]

Transcriptional Response of Circadian Clock Genes to an 'Artificial Light at Night' Pulse in the Cricket <i>Gryllus bimaculatus</i>.

Journal: International journal of molecular sciences

Status: data only, 1 dataset cited

[41678] doi:10.7554/elife.74263 [paper, data]

Early anteroposterior regionalisation of human neural crest is shaped by a pro-mesodermal factor.

Journal: eLife

Status: data only, 1 dataset cited

Sunday, 25 September 2022 (3 papers)

[41679] doi:10.1016/j.crphys.2022.09.001 [paper, data]

Effect of an autism-associated <i>KCNMB2</i> variant, G124R, on BK channel properties.

Journal: Current research in physiology

Status: data only, 1 dataset cited

[41680] doi:10.1111/jnc.15694 [paper, repository]

Chemical traits of cerebral amyloid angiopathy in familial British-, Danish-, and non-Alzheimer's dementias.

Journal: Journal of neurochemistry

Authors' code: ome/bioformats (GPL-2.0)

Status: code verified, 702 files readable, 3 matches

[41681] doi:10.3390/jpm12101579 [paper, data]

Dopaminergic Gene Dosage Reveals Distinct Biological Partitions between Autism and Developmental Delay as Revealed by Complex Network Analysis and Machine Learning Approaches.

Journal: Journal of personalized medicine

Status: data only, 1 dataset cited

Saturday, 24 September 2022 (20 papers)

[41682] doi:10.1007/s12035-022-03031-x [paper]

Spatial Analysis of Neural Cell Proteomic Profiles Following Ischemic Stroke in Mice Using High-Plex Digital Spatial Profiling.

Journal: Molecular neurobiology

Status: data only

[41683] doi:10.1016/j.nicl.2022.103205 [paper, repository]

Cortical lesions, central vein sign, and paramagnetic rim lesions in multiple sclerosis: Emerging machine learning techniques and future avenues.

Journal: NeuroImage. Clinical

Authors' code: carolynlou/prlr (other)

Status: code verified, 8 files readable

[41684] doi:10.1016/j.omtm.2022.09.007 [paper]

SARS-CoV-2 infection increases the gene expression profile for Alzheimer's disease risk.

Journal: Molecular therapy. Methods & clinical development

Status: data only

[41685] doi:10.1016/j.xops.2022.100225 [paper, repository]

Investigating Determinants and Evaluating Deep Learning Training Approaches for Visual Acuity in Foveal Hypoplasia.

Journal: Ophthalmology science

Authors' code: datduong/stylegan2-ada-FovealHypoplasia (other)

Status: code verified, 65 files readable, 1 match

[41686] doi:10.1016/j.xpro.2022.101722 [paper, repository]

Simultaneous analysis of social behaviors and neural responses in mice using round social arena system.

Journal: STAR protocols

Authors' code: Zenodo 6687251 (other-open)

Status: code verified, 1 file readable

[41687] doi:10.1038/s41467-022-33394-7 [paper, repository]

DNA methylation signatures of Alzheimer's disease neuropathology in the cortex are primarily driven by variation in non-neuronal cell-types.

Journal: Nature communications

Authors' code: gemmashireby/BDR_neuropathology_EWAS (no license), Zenodo 7017388 (other-open)

Status: code verified, 10 files readable, 2 matches

[41688] doi:10.1038/s41598-022-20218-3 [paper, data]

Selective modulation of cortical population dynamics during neuroprosthetic skill learning.

Journal: Scientific reports

Status: data only, 1 dataset cited

[41689] doi:10.1038/s41598-022-20309-1 [paper, repository]

Resting-state fMRI functional connectivity of the left temporal parietal junction is associated with visual temporal order threshold.

Journal: Scientific reports

Authors' code: krzysztoftolpa/temporal-resolution (GPL-3.0)

Status: code verified, 10 files readable, 1 match

[41690] doi:10.1038/s41598-022-20413-2 [paper, data]

Spectral properties of physiological mirror activity: an investigation of frequency features and common input between homologous muscles.

Journal: Scientific reports

Status: data only, 1 dataset cited

[41691] doi:10.1186/s12967-022-03638-7 [paper, data]

Long-term neuromuscular consequences of SARS-Cov-2 and their similarities with myalgic encephalomyelitis/chronic fatigue syndrome: results of the retrospective CoLGEM study.

Journal: Journal of translational medicine

Status: data only, 1 dataset cited

[41692] doi:10.1186/s12974-022-02581-0 [paper, data]

Comparative analysis of transcriptome remodeling in plaque-associated and plaque-distant microglia during amyloid-β pathology progression in mice.

Journal: Journal of neuroinflammation

Status: data only, 5 datasets cited

[41693] doi:10.1186/s13024-022-00566-4 [paper, data]

APOE in the bullseye of neurodegenerative diseases: impact of the APOE genotype in Alzheimer's disease pathology and brain diseases.

Journal: Molecular neurodegeneration

Status: data only, 1 dataset cited

[41694] doi:10.1186/s13073-022-01111-0 [paper, data]

Single-cell RNA transcriptome analysis of CNS immune cells reveals CXCL16/CXCR6 as maintenance factors for tissue-resident T cells that drive synapse elimination.

Journal: Genome medicine

Status: data only, 2 datasets cited

[41695] doi:10.1186/s13229-022-00517-2 [paper, repository]

Atypical gaze patterns in autistic adults are heterogeneous across but reliable within individuals.

Journal: Molecular autism

Authors' code: adolphslab/adolphslab_eyetracking (no license)

Status: code verified, 30 files readable, 3 matches

[41696] doi:10.1186/s42490-022-00065-z [paper, repository]

An open-access plug-in program for 3D modelling distinct material properties of cortical and trabecular bone.

Journal: BMC biomedical engineering

Authors' code: sourceforge.net/yale-scanip-plug-in (no license)

Status: code verified

[41697] doi:10.2478/jtim-2022-0024 [paper, data]

Aberrant Energy Metabolism in Alzheimer's Disease.

Journal: Journal of translational internal medicine

Status: data only, 1 dataset cited

[41698] doi:10.3390/cells11192978 [paper, data]

cATR Tracing Approach to Identify Individual Intermediary Neurons Based on Their Input and Output: A Proof-of-Concept Study Connecting Cerebellum and Central Hubs Implicated in Developmental Disorders.

Journal: Cells

Status: data only, 2 datasets cited

[41699] doi:10.3390/diagnostics12102305 [paper, data]

In Vivo Parieto-Occipital White Matter Metabolism Is Correlated with Visuospatial Deficits in Adult DM1 Patients.

Journal: Diagnostics (Basel, Switzerland)

Status: data only, 1 dataset cited

[41700] doi:10.3390/ijms231911245 [paper, data]

The Microbiota-Gut-Brain Axis in Psychiatric Disorders.

Journal: International journal of molecular sciences

Status: data only, 4 datasets cited

[41701] doi:10.3390/nu14193967 [paper, data]

Does the Gut Microbial Metabolome Really Matter? The Connection between GUT Metabolome and Neurological Disorders.

Journal: Nutrients

Status: data only, 1 dataset cited

Friday, 23 September 2022 (36 papers)

[41702] doi:10.1016/j.isci.2022.105187 [paper, repository]

<i>CASK</i> loss of function differentially regulates neuronal maturation and synaptic function in human induced cortical excitatory neurons.

Journal: iScience

Authors' code: UMMS-Biocore/dolphinnext (no license)

Status: code verified, 1,374 files readable, 5 matches

[41703] doi:10.1016/j.isci.2022.105191 [paper]

Whole-brain optical access in a small adult vertebrate with two- and three-photon microscopy.

Journal: iScience

Status: code on request

[41704] doi:10.1016/j.isci.2022.105197 [paper]

Human fetal membrane-mesenchymal stromal cells generate functional spinal motor neurons <i>in vitro</i>.

Journal: iScience

Status: code on request

[41705] doi:10.1038/s41398-022-02157-9 [paper, data]

Pathological fear, anxiety and negative affect exhibit distinct neurostructural signatures: evidence from psychiatric neuroimaging meta-analysis.

Journal: Translational psychiatry

Status: data only, 1 dataset cited

[41706] doi:10.1038/s41467-022-33240-w [paper, repository]

Local features drive identity responses in macaque anterior face patches.

Journal: Nature communications

Authors' code: figshare 19947182 (CC-BY-4.0)

Status: code verified, 25 files readable, 2 matches

[41707] doi:10.1038/s41467-022-33259-z [paper, repository]

Noise-resilient and high-speed deep learning with coherent silicon photonics.

Journal: Nature communications

Authors' code: georgemourgias/noise_aware_cpnn (no license)

Status: code verified, 5 files readable

[41708] doi:10.1038/s41467-022-33393-8 [paper]

Synaptic plasticity in self-powered artificial striate cortex for binocular orientation selectivity.

Journal: Nature communications

Status: code on request

[41709] doi:10.1038/s41531-022-00355-2 [paper, repository]

Parkinson's disease-associated, sex-specific changes in DNA methylation at PARK7 (DJ-1), SLC17A6 (VGLUT2), PTPRN2 (IA-2β), and NR4A2 (NURR1) in cortical neurons.

Journal: NPJ Parkinson's disease

Authors' code: OSF z4vbw (no license), supp:PMC9508164/41531_2022_355_MOESM8_ESM.rmd (no license), supp:PMC9508164/41531_2022_355_MOESM10_ESM.rmd (no license)

Status: code verified, 2 files readable, 3 matches

[41710] doi:10.1038/s41537-022-00288-y [paper]

Network hub centrality and working memory performance in schizophrenia.

Journal: Schizophrenia (Heidelberg, Germany)

Status: code on request

[41711] doi:10.1038/s41598-022-17951-0 [paper, repository]

Strategic complexity and cognitive skills affect brain response in interactive decision-making.

Journal: Scientific reports

Authors' code: OSF h4n5c (no license)

Status: code verified, 2 files readable, 2 matches

[41712] doi:10.1038/s41598-022-19018-6 [paper, data]

Passage number affects differentiation of sensory neurons from human induced pluripotent stem cells.

Journal: Scientific reports

Status: data only, 1 dataset cited

[41713] doi:10.1038/s42003-022-03974-w [paper, repository]

The interindividual variability of multimodal brain connectivity maintains spatial heterogeneity and relates to tissue microstructure.

Journal: Communications biology

Authors' code: OSF rqj8a (no license)

Status: code verified, 23 files readable, 2 matches

[41714] doi:10.1093/braincomms/fcac241 [paper, data]

Motor inhibition and its contribution to recovery of dexterous hand use after stroke.

Journal: Brain communications

Status: data only, 1 dataset cited

[41715] doi:10.1093/braincomms/fcac242 [paper, data]

NOS1AP is a novel molecular target and critical factor in TDP-43 pathology.

Journal: Brain communications

Status: data only, 1 dataset cited

[41716] doi:10.1126/sciadv.abq2773 [paper, data]

Best frequencies and temporal delays are similar across the low-frequency regions of the guinea pig cochlea.

Journal: Science advances

Status: data only, 1 dataset cited

[41717] doi:10.1136/jnnp-2022-329772 [paper, data]

Clinical features of <i>NOTCH2NLC</i>-related neuronal intranuclear inclusion disease.

Journal: Journal of neurology, neurosurgery, and psychiatry

Status: data only, 1 dataset cited

[41718] doi:10.1371/journal.pcbi.1010534 [paper, repository]

Computational models reveal how chloride dynamics determine the optimal distribution of inhibitory synapses to minimise dendritic excitability.

Journal: PLoS computational biology

Authors' code: ChrisCurrin/chloride-dynamics-and-dendrites (GPL-3.0)

Status: code verified, 49 files readable, 3 matches

[41719] doi:10.1523/eneuro.0491-21.2022 [paper, repository]

A Standardized Nonvisual Behavioral Event Is Broadcasted Homogeneously across Cortical Visual Areas without Modulating Visual Responses.

Journal: eNeuro

Authors' code: mahdiramadan/Fidget_Paper (no license)

Status: code verified, 3 files readable, 2 matches

[41720] doi:10.15252/embj.2021110192 [paper, data]

Stimulus-specific remodeling of the neuronal transcriptome through nuclear intron-retaining transcripts.

Journal: The EMBO journal

Status: data only, 1 dataset cited

[41721] doi:10.26508/lsa.202201520 [paper, repository]

miR-329- and miR-495-mediated Prr7 down-regulation is required for homeostatic synaptic depression in rat hippocampal neurons.

Journal: Life science alliance

Authors' code: dcolam/Cluster-Analysis-Plugin (MIT)

Status: code verified, 20 files readable, 2 matches

[41722] doi:10.3389/fimmu.2022.967356 [paper]

Single-nucleus RNA sequencing reveals the shared mechanisms inducing cognitive impairment between COVID-19 and Alzheimer's disease.

Journal: Frontiers in immunology

Status: code on request

[41723] doi:10.3389/fnbeh.2022.992727 [paper, repository]

Brain gene expression differences related to ethanol preference in the collaborative cross founder strains.

Journal: Frontiers in behavioral neuroscience

Authors' code: parcbioinfo/HSCC_Founders_DE (no license)

Status: code verified, 2 files readable, 5 matches

[41724] doi:10.3389/fncel.2022.956029 [paper]

Conditional deletion of MAD2B in forebrain neurons enhances hippocampus-dependent learning and memory in mice.

Journal: Frontiers in cellular neuroscience

Status: data only

[41725] doi:10.3389/fncir.2022.982721 [paper, data]

Cell-type specific transcriptomic signatures of neocortical circuit organization and their relevance to autism.

Journal: Frontiers in neural circuits

Status: data only, 2 datasets cited

[41726] doi:10.3389/fneur.2022.934650 [paper, data]

Automatic segmentation of the core of the acoustic radiation in humans.

Journal: Frontiers in neurology

Status: data only, 3 datasets cited

[41727] doi:10.3389/fnhum.2022.958706 [paper, repository]

Complexity changes in functional state dynamics suggest focal connectivity reductions.

Journal: Frontiers in human neuroscience

Authors' code: decolab/LEICA (no license), decolab/Functions (no license), decolab/Effective-Connectivity--Hopf (no license)

Status: code verified, 143 files readable, 9 matches

[41728] doi:10.3389/fninf.2022.919779 [paper, repository]

A domain adaptation benchmark for T1-weighted brain magnetic resonance image segmentation.

Journal: Frontiers in neuroinformatics

Authors' code: ParisaSaat/Brain-MR-Segmentation-Playground (no license)

Status: code verified, 33 files readable, 3 matches

[41729] doi:10.3389/fnins.2022.902866 [paper]

Sight restoration reverses blindness-induced cross-modal functional connectivity changes between the visual and somatosensory cortex at rest.

Journal: Frontiers in neuroscience

Status: code on request

[41730] doi:10.3389/fnins.2022.968839 [paper, repository]

Dose-response relationship between the variables of unilateral optogenetic stimulation and transcallosal evoked responses in rat motor cortex.

Journal: Frontiers in neuroscience

Authors' code: git.drcmr.dk/cskoven/pulsepal (no license)

Status: dead link

[41731] doi:10.3389/fpsyt.2022.1017399 [paper, data]

Higher brain structural heterogeneity in schizophrenia.

Journal: Frontiers in psychiatry

Status: data only, 1 dataset cited

[41732] doi:10.3389/frai.2022.774752 [paper, repository]

Affordance embeddings for situated language understanding.

Journal: Frontiers in artificial intelligence

Authors' code: VoxML/VoxSim (LGPL-3.0)

Status: code verified, 127 files readable

[41733] doi:10.3390/biomedicines10102377 [paper, data]

Postnatal Conditional Deletion of <i>Bcl11b</i> in Striatal Projection Neurons Mimics the Transcriptional Signature of Huntington's Disease.

Journal: Biomedicines

Status: data only, 1 dataset cited

[41734] doi:10.3390/cells11192970 [paper, repository]

Treatment of Marmoset Intracerebral Hemorrhage with Humanized Anti-HMGB1 mAb.

Journal: Cells

Authors' code: wong-ziyi/FlowCytometricAnalysisFrame (GPL-3.0)

Status: code verified, 3 files readable

[41735] doi:10.3390/molecules27196256 [paper, repository]

Objective Supervised Machine Learning-Based Classification and Inference of Biological Neuronal Networks.

Journal: Molecules (Basel, Switzerland)

Authors' code: Zenodo 4009922 (other-open), Zenodo 4009917 (other-open), platinum95/neurpy (no license)

Status: code verified, 33 files readable, 11 matches

[41736] doi:10.7554/elife.75600 [paper, repository]

Rapid, Reference-Free human genotype imputation with denoising autoencoders.

Journal: eLife

Authors' code: torkamanilab/imputation_autoencoder (no license), TorkamaniLab/imputation_accuracy_calculator (MIT), TorkamaniLab/imputator_inference (no license)

Status: code verified, 91 files readable, 7 matches

[41737] doi:10.7554/elife.80206 [paper, data]

Non-rapid eye movement sleep determines resilience to social stress.

Journal: eLife

Status: data only, 1 dataset cited

Thursday, 22 September 2022 (27 papers)

[41738] doi:10.1002/brb3.2667 [paper]

Online closed-loop real-time tES-fMRI for brain modulation: A technical report.

Journal: Brain and behavior

Status: code on request

[41739] doi:10.1016/j.isci.2022.105177 [paper]

Spatial accuracy evaluation of magnetic source imaging methods on OPM-based MEG.

Journal: iScience

Status: code on request

[41740] doi:10.1016/j.nicl.2022.103209 [paper, repository]

Leveraging manifold learning techniques to explore white matter anomalies: An application of the TractLearn pipeline in epilepsy.

Journal: NeuroImage. Clinical

Authors' code: MIC-DKFZ/TractSeg (Apache-2.0), GeodAIsics/TractLearn-WholeBrain (no license), neurolabusc/NiiStat (GPL-2.0)

Status: code verified, 183 files readable, 7 matches

[41741] doi:10.1038/s41467-022-32947-0 [paper, repository]

Wireless multi-lateral optofluidic microsystems for real-time programmable optogenetics and photopharmacology.

Journal: Nature communications

Authors' code: A-VazquezGuardado/Smart_NFC_Optofluidics (GPL-3.0), Zenodo 6946429 (other-open)

Status: code verified, 8 files readable

[41742] doi:10.1038/s41467-022-33242-8 [paper, repository]

Context-dependent selectivity to natural images in the retina.

Journal: Nature communications

Authors' code: samuele_virgili/retina_modelling_2 (no license), samuelevirgili/Context-dependent-selectivity-to-natural-images-in-the-retina (no license)

Status: code verified, 44 files readable, 8 matches

[41743] doi:10.1038/s41562-022-01434-3 [paper, repository]

Relationship between nuclei-specific amygdala connectivity and mental health dimensions in humans.

Journal: Nature human behaviour

Authors' code: OSF egm2r (no license)

Status: code verified, 65 files readable, 19 matches

[41744] doi:10.1038/s41587-022-01455-3 [paper, repository]

Scalable in situ single-cell profiling by electrophoretic capture of mRNA using EEL FISH.

Journal: Nature biotechnology

Authors' code: protocols.io/view/robofish-construction-bcrciv2w (no license), linnarsson-lab/ROBOFISH (MIT), linnarsson-lab/FISHscale (no license), linnarsson-lab/pysmFISH (MIT), linnarsson-lab/Py_TC-720 (MIT), linnarsson-lab/ThermoCube (MIT), linnarsson-lab/Oasis_chiller (MIT), linnarsson-lab/MXII-valve (MIT)

Status: code verified, 125 files readable, 14 matches

[41745] doi:10.1038/s41592-022-01597-x [paper, repository]

A fluorescent sensor for real-time measurement of extracellular oxytocin dynamics in the brain.

Journal: Nature methods

Authors' code: daisukeino/MTRIAOT (no license)

Status: empty repository, 1 file readable

[41746] doi:10.1038/s41597-022-01677-9 [paper, repository]

A behavioral and brain imaging dataset with focus on emotion regulation of women with fibromyalgia.

Journal: Scientific data

Authors' code: Zenodo 6554869 (CC-BY-4.0)

Status: code verified, 3 files readable, 1 match

[41747] doi:10.1038/s41598-022-19389-w [paper, repository]

Characteristics of children of the Microcephaly Epidemic Research Group Pediatric Cohort who developed postnatal microcephaly.

Journal: Scientific reports

Authors' code: cnpq.br (no license)

Status: code verified

[41748] doi:10.1093/braincomms/fcac239 [paper, repository]

Cognitive and behavioural but not motor impairment increases brain age in amyotrophic lateral sclerosis.

Journal: Brain communications

Authors' code: OSF fyt7d (no license)

Status: empty repository

[41749] doi:10.1162/nol_a_00078 [paper, repository]

Can You Hear What's Coming? Failure to Replicate ERP Evidence for Phonological Prediction.

Journal: Neurobiology of language (Cambridge, Mass.)

Authors' code: OSF a4bpw (no license)

Status: code verified, 7 files readable, 2 matches

[41750] doi:10.1172/jci.insight.158953 [paper, data]

Molecular and behavioral consequences of Ube3a gene overdosage in mice.

Journal: JCI insight

Status: data only, 1 dataset cited

[41751] doi:10.1172/jci.insight.162101 [paper, repository]

Fetal maturation revealed by amniotic fluid cell-free transcriptome in rhesus macaques.

Journal: JCI insight

Authors' code: danschnell/ds_bioinformatics (no license)

Status: empty repository, 1 file readable

[41752] doi:10.12688/f1000research.125368.1 [paper, data]

Circadian signatures of anterior hypothalamus in time-restricted feeding.

Journal: F1000Research

Status: data only, 1 dataset cited

[41753] doi:10.1371/journal.pone.0274566 [paper, data]

Robust natural depth for anticorrelated random dot stereogram for edge stimuli, but minimal reversed depth for embedded circular stimuli, irrespective of eccentricity.

Journal: PloS one

Status: data only, 1 dataset cited

[41754] doi:10.1371/journal.pone.0274591 [paper, repository]

On taming the effect of transcript level intra-condition count variation during differential expression analysis: A story of dogs, foxes and wolves.

Journal: PloS one

Authors' code: sourceforge.net/tvscript (no license), sourceforge.net/csreadgen (no license), Zenodo 6676483 (CC-BY-4.0), Zenodo 6778429 (CC-BY-4.0)

Status: code verified, 1 file readable

[41755] doi:10.1371/journal.pone.0274778 [paper, data]

Analysis of the extent of limbic system changes in multiple sclerosis using FreeSurfer and voxel-based morphometry approaches.

Journal: PloS one

Status: data only, 1 dataset cited

[41756] doi:10.1371/journal.pone.0274955 [paper, data]

Using whole-brain diffusion tensor analysis to evaluate white matter structural correlates of delayed visuospatial memory and one-week motor skill retention in nondemented older adults: A preliminary study.

Journal: PloS one

Status: data only, 1 dataset cited

[41757] doi:10.1523/eneuro.0094-22.2022 [paper]

Sources of Variation in the Spectral Slope of the Sleep EEG.

Journal: eNeuro

Status: code on request

[41758] doi:10.1523/eneuro.0104-22.2022 [paper, repository]

Enlarged Interior Built Environment Scale Modulates High-Frequency EEG Oscillations.

Journal: eNeuro

Authors' code: OSF 5mvn3 (no license)

Status: empty repository

[41759] doi:10.3389/fnimg.2022.917806 [paper, repository]

DORIS: A diffusion MRI-based 10 tissue class deep learning segmentation algorithm tailored to improve anatomically-constrained tractography.

Journal: Frontiers in neuroimaging

Authors' code: Zenodo 2602049 (CC-BY-4.0)

Status: code verified

[41760] doi:10.3389/fninf.2022.884245 [paper, repository]

Large-scale biophysically detailed model of somatosensory thalamocortical circuits in NetPyNE.

Journal: Frontiers in neuroinformatics

Authors' code: suny-downstate-medical-center/S1_Thal_NetPyNE_Frontiers_2022 (no license), osb: (no license), BlueBrain/eFEL (GPL-3.0)

Status: code verified, 227 files readable, 9 matches

[41761] doi:10.3389/frai.2022.991242 [paper, repository]

Lexical simplification benchmarks for English, Portuguese, and Spanish.

Journal: Frontiers in artificial intelligence

Authors' code: simplenlg/simplenlg (MPL-2.0), qiang2100/BERT-LS (no license)

Status: code verified, 179 files readable, 6 matches

[41762] doi:10.3390/ijms231911125 [paper, data]

Meta-Analysis Identifies <i>BDNF</i> and Novel Common Genes Differently Altered in Cross-Species Models of Rett Syndrome.

Journal: International journal of molecular sciences

Status: data only, 1 dataset cited

[41763] doi:10.3390/jimaging8100259 [paper, repository]

DS6, Deformation-Aware Semi-Supervised Learning: Application to Small Vessel Segmentation with Noisy Training Data.

Journal: Journal of imaging

Authors' code: soumickmj/DS6 (no license), braincharter/vasculature_notebook (CC-BY-4.0)

Status: code verified, 27 files readable, 7 matches

[41764] doi:10.3390/ph15101177 [paper, data]

FTH1- and SAT1-Induced Astrocytic Ferroptosis Is Involved in Alzheimer's Disease: Evidence from Single-Cell Transcriptomic Analysis.

Journal: Pharmaceuticals (Basel, Switzerland)

Status: data only, 1 dataset cited

Wednesday, 21 September 2022 (37 papers)

[41765] doi:10.1002/hbm.26085 [paper, data]

Spontaneous brain activity abnormalities in migraine: A meta-analysis of functional neuroimaging.

Journal: Human brain mapping

Status: data only, 1 dataset cited

[41766] doi:10.1007/s13311-022-01302-y [paper, data]

Selective Cerebrospinal Fluid Hypothermia: Bioengineering Development and In Vivo Study of an Intraventricular Cooling Device (V-COOL).

Journal: Neurotherapeutics : the journal of the American Society for Experimental NeuroTherapeutics

Status: data only, 2 datasets cited

[41767] doi:10.1016/j.dcn.2022.101154 [paper, data]

No statistical learning advantage in children over adults: Evidence from behaviour and neural entrainment.

Journal: Developmental cognitive neuroscience

Status: data only, 2 datasets cited

[41768] doi:10.1016/j.isci.2022.105169 [paper, data]

ADH-PPI: An attention-based deep hybrid model for protein-protein interaction prediction.

Journal: iScience

Status: data only, 1 dataset cited

[41769] doi:10.1016/j.media.2022.102628 [paper, repository]

CrossMoDA 2021 challenge: Benchmark of cross-modality domain adaptation techniques for vestibular schwannoma and cochlea segmentation.

Journal: Medical image analysis

Authors' code: Kaiseem/DAR-UNet (Apache-2.0), chkzhao/crossMoDA (no license), JianghaoWu/FPL-UDA (MIT)

Status: code verified, 256 files readable, 9 matches

[41770] doi:10.1016/j.neuroimage.2022.119642 [paper, data]

Speech artifact is also present in spike data.

Journal: NeuroImage

Status: data only, 1 dataset cited

[41771] doi:10.1016/j.neuron.2022.08.028 [paper, repository]

Independent response modulation of visual cortical neurons by attentional and behavioral states.

Journal: Neuron

Authors' code: Ivan-Voitov/ViZi (no license), zivlab/CellReg (GPL-2.0), Zenodo 6640207 (CC-BY-4.0)

Status: code verified, 66 files readable, 7 matches

[41772] doi:10.1016/j.ynirp.2022.100135 [paper, repository]

Evidence for a single rather than a triple dissociation in the medial temporal lobe: An fMRI recognition memory replication study.

Journal: Neuroimage. Reports

Authors' code: OSF ctvsw (no license)

Status: code verified, 40 files readable, 7 matches

[41773] doi:10.1038/s41380-022-01776-4 [paper, repository]

Rare copy number variation in posttraumatic stress disorder.

Journal: Molecular psychiatry

Authors' code: nievergeltlab/cnv_freeze1 (no license)

Status: code verified, 18 files readable, 2 matches

[41774] doi:10.1038/s41398-022-02162-y [paper]

Accelerated functional brain aging in major depressive disorder: evidence from a large scale fMRI analysis of Chinese participants.

Journal: Translational psychiatry

Status: code on request

[41775] doi:10.1038/s41467-022-33140-z [paper, repository]

Transcriptomic architecture of nuclei in the marmoset CNS.

Journal: Nature communications

Authors' code: saeyslab/nichenetr (no license)

Status: code verified, 61 files readable, 3 matches

[41776] doi:10.1038/s41467-022-33162-7 [paper, repository]

Multi-omic brain and behavioral correlates of cell-free fetal DNA methylation in macaque maternal obesity models.

Journal: Nature communications

Authors' code: ben-laufer/CpG_Me (MIT), Zenodo 5030083 (other-open), ben-laufer/cffDNA-and-Brain-Manuscript (MIT), Zenodo 5348009 (other-open)

Status: code verified, 44 files readable, 17 matches

[41777] doi:10.1038/s41467-022-33296-8 [paper, repository]

Neural probe system for behavioral neuropharmacology by bi-directional wireless drug delivery and electrophysiology in socially interacting mice.

Journal: Nature communications

Authors' code: HyogeunShin/Wireless-System_NatComm22 (MIT), Zenodo 7032078 (other-open)

Status: code verified, 288 files readable, 2 matches

[41778] doi:10.1038/s41598-022-19908-9 [paper, repository]

Cocaine regulation of Nr4a1 chromatin bivalency and mRNA in male and female mice.

Journal: Scientific reports

Authors' code: HellerLAbeats/Nr4a1_bivalency (no license)

Status: dead link

[41779] doi:10.1038/s41598-022-19914-x [paper, repository]

Development of artificial intelligence for automated measurement of cervical lordosis on lateral radiographs.

Journal: Scientific reports

Authors' code: wkentaro/labelme (GPL-3.0), qubvel/segmentation_models.pytorch (MIT), ykszk.github.io/c2c7demo (no license), ykszk/c2c7demo (MIT)

Status: code verified, 368 files readable, 1 match

[41780] doi:10.1038/s42003-022-03950-4 [paper, repository]

Frontoparietal network activation is associated with motor recovery in ischemic stroke patients.

Journal: Communications biology

Authors' code: emilyolafson/dynamic-brainstates (no license), Zenodo 6954085 (CC-BY-4.0)

Status: code verified, 274 files readable, 8 matches

[41781] doi:10.1038/s42003-022-03967-9 [paper, repository]

A Hidden Markov Model reveals magnetoencephalography spectral frequency-specific abnormalities of brain state power and phase-coupling in neuropathic pain.

Journal: Communications biology

Authors' code: ACCLAB/DABEST-python (Apache-2.0)

Status: code verified, 85 files readable

[41782] doi:10.1038/s43856-022-00182-9 [paper, data]

Activation of neural lineage networks and ARHGEF2 in enzalutamide-resistant and neuroendocrine prostate cancer and association with patient outcomes.

Journal: Communications medicine

Status: data only, 1 dataset cited

[41783] doi:10.1098/rstb.2021.0182 [paper, repository]

When laughter arrests speech: fMRI-based evidence.

Journal: Philosophical transactions of the Royal Society of London. Series B, Biological sciences

Authors' code: doi:10.6084/m9.figshare.c.6125805 (no license)

Status: code found, still to be checked

[41784] doi:10.1098/rstb.2021.0190 [paper, data]

Degenerate pathway for processing smile and other emotional expressions in congenital facial palsy: an hdEEG investigation.

Journal: Philosophical transactions of the Royal Society of London. Series B, Biological sciences

Status: data only, 1 dataset cited

[41785] doi:10.1098/rstb.2021.0512 [paper, repository]

A deep neural network model of the primate superior colliculus for emotion recognition.

Journal: Philosophical transactions of the Royal Society of London. Series B, Biological sciences

Authors' code: doi:10.6084/m9.figshare.c.6125823 (no license)

Status: code found, still to be checked

[41786] doi:10.1126/sciadv.abm5952 [paper, repository]

Analysis of sloppiness in model simulations: Unveiling parameter uncertainty when mathematical models are fitted to data.

Journal: Science advances

Authors' code: figshare 19228008 (CC-BY-4.0)

Status: code verified

[41787] doi:10.1186/s12974-022-02591-y [paper, data]

Nicotinamide reverses deficits in puberty-born neurons and cognitive function after maternal separation.

Journal: Journal of neuroinflammation

Status: data only, 1 dataset cited

[41788] doi:10.1186/s12987-022-00375-3 [paper, data]

Nuclear receptor ligand screening in an iPSC-derived in vitro blood-brain barrier model identifies new contributors to leptin transport.

Journal: Fluids and barriers of the CNS

Status: data only, 1 dataset cited

[41789] doi:10.1186/s13024-022-00558-4 [paper, data]

Elevated ganglioside GM2 activator (GM2A) in human brain tissue reduces neurite integrity and spontaneous neuronal activity.

Journal: Molecular neurodegeneration

Status: data only, 3 datasets cited

[41790] doi:10.1186/s13059-022-02770-3 [paper, repository]

Genomics and epigenetics guided identification of tissue-specific genomic safe harbors.

Journal: Genome biology

Authors' code: dewshr/geg-sh (MIT), Zenodo 7041570 (MIT)

Status: code verified, 5 files readable, 3 matches

[41791] doi:10.1186/s40359-022-00928-z [paper, data]

The mental representation of occupational stereotypes is driven as much by their affective as by their semantic content.

Journal: BMC psychology

Status: data only, 1 dataset cited

[41792] doi:10.1186/s40478-022-01414-8 [paper, data]

Unraveling axonal mechanisms of traumatic brain injury.

Journal: Acta neuropathologica communications

Status: data only, 3 datasets cited

[41793] doi:10.1186/s40478-022-01425-5 [paper, repository]

Interpretable deep learning of myelin histopathology in age-related cognitive impairment.

Journal: Acta neuropathologica communications

Authors' code: andymckenzie/deep_histopathology_manuscript (no license)

Status: code verified, 5 files readable, 1 match

[41794] doi:10.1371/journal.pone.0273699 [paper, repository]

Inferring stimulation induced short-term synaptic plasticity dynamics using novel dual optimization algorithm.

Journal: PloS one

Authors' code: nsbspl/Daul_Optimization (no license)

Status: code verified, 29 files readable

[41795] doi:10.1371/journal.pone.0274847 [paper, repository]

Improving classification and reconstruction of imagined images from EEG signals.

Journal: PloS one

Authors' code: shimihirouci/Improve_Imagination (GPL-3.0)

Status: code verified, 10 files readable, 5 matches

[41796] doi:10.1523/eneuro.0116-22.2022 [paper, data]

The Importance of Semantic Network Brain Regions in Integrating Prior Knowledge with an Ongoing Dialogue.

Journal: eNeuro

Status: data only, 1 dataset cited

[41797] doi:10.3389/fimmu.2022.992505 [paper, data]

Single-cell RNA sequencing of CSF reveals neuroprotective RAC1⁺ NK cells in Parkinson's disease.

Journal: Frontiers in immunology

Status: data only, 1 dataset cited

[41798] doi:10.3389/fonc.2022.965136 [paper, data]

DIRAS3, GPR171 and RAC2 were identified as the key molecular patterns associated with brain metastasis of breast cancer.

Journal: Frontiers in oncology

Status: data only, 1 dataset cited

[41799] doi:10.3390/ijms231911084 [paper, data]

Targeting the Maladaptive Effects of Binge Drinking on Circadian Gene Expression.

Journal: International journal of molecular sciences

Status: data only, 1 dataset cited

[41800] doi:10.3390/nu14193907 [paper]

Healthy Lifestyle, Genetic Risk and Brain Health: A Gene-Environment Interaction Study in the UK Biobank.

Journal: Nutrients

Status: code on request

[41801] doi:10.7554/elife.77643 [paper, data]

A dopamine-gated learning circuit underpins reproductive state-dependent odor preference in <i>Drosophila</i> females.

Journal: eLife

Status: data only, 2 datasets cited

Tuesday, 20 September 2022 (24 papers)

[41802] doi:10.1002/dneu.22899 [paper, data]

The cortical hem lacks stem cell potential despite expressing SOX9 and HOPX.

Journal: Developmental neurobiology

Status: data only, 1 dataset cited

[41803] doi:10.1002/ece3.9273 [paper, repository]

Using relative brain size as predictor variable: Serious pitfalls and solutions.

Journal: Ecology and evolution

Authors' code: simeonqs/Using_relative_brain_size_as_predictor_variable-_serious_pitfalls_and_solutions (no license)

Status: code verified, 12 files readable, 1 match

[41804] doi:10.1007/s10565-022-09761-x [paper, data]

The role of microRNAs in neurodegenerative diseases: a review.

Journal: Cell biology and toxicology

Status: data only, 5 datasets cited

[41805] doi:10.1007/s12671-022-01974-9 [paper, data]

Shifting Baselines: Longitudinal Reductions in EEG Beta Band Power Characterize Resting Brain Activity with Intensive Meditation.

Journal: Mindfulness

Status: data only, 1 dataset cited

[41806] doi:10.1016/j.crmeth.2022.100299 [paper, repository]

SpecSeg is a versatile toolbox that segments neurons and neurites in chronic calcium imaging datasets based on low-frequency cross-spectral power.

Journal: Cell reports methods

Authors' code: Leveltlab/SpectralSegmentation (CC-BY-NC-SA-4.0), adamshch/naomi_sim (MIT), zhoupc/CNMF_E (GPL-3.0)

Status: code verified, 644 files readable, 18 matches

[41807] doi:10.1016/j.crmeth.2022.100301 [paper, repository]

Engineered fast-dissociating antibody fragments for multiplexed super-resolution microscopy.

Journal: Cell reports methods

Authors' code: takushim/tanitracer (MIT)

Status: code verified, 23 files readable

[41808] doi:10.1038/s41398-022-02174-8 [paper]

Stimulation of the ventromedial prefrontal cortex blocks the return of subcortically mediated fear responses.

Journal: Translational psychiatry

Status: code on request

[41809] doi:10.1038/s41419-022-05243-4 [paper, data]

Primary cilia contribute to the aggressiveness of atypical teratoid/rhabdoid tumors.

Journal: Cell death & disease

Status: data only, 1 dataset cited

[41810] doi:10.1038/s41467-022-33015-3 [paper, repository]

An anti-inflammatory activation sequence governs macrophage transcriptional dynamics during tissue injury in zebrafish.

Journal: Nature communications

Authors' code: Zenodo 6871552 (other-open), piotrowski-lab/seuratextensions (no license)

Status: code verified, 32 files readable, 2 matches

[41811] doi:10.1038/s43587-022-00281-1 [paper, data]

Complement C1q-dependent excitatory and inhibitory synapse elimination by astrocytes and microglia in Alzheimer's disease mouse models.

Journal: Nature aging

Status: data only, 2 datasets cited

[41812] doi:10.1128/mra.00737-22 [paper, data]

Vesicular Stomatitis Virus Isolated from a Bovine Brain Sample in Costa Rica.

Journal: Microbiology resource announcements

Status: data only, 1 dataset cited

[41813] doi:10.3389/fendo.2022.885617 [paper, repository]

Duration of oral contraceptive use relates to cognitive performance and brain activation in current and past users.

Journal: Frontiers in endocrinology

Authors' code: OSF q7wth (no license), webapps.ccns.sbg.ac.at/opendata (no license), OSF t3v7z (no license)

Status: code verified, 1 file readable

[41814] doi:10.3389/fimmu.2022.1013664 [paper, data]

<i>Bifidobacterium breve</i> intervention combined with environmental enrichment alleviates cognitive impairment by regulating the gut microbiota and microbial metabolites in Alzheimer's disease mice.

Journal: Frontiers in immunology

Status: data only, 1 dataset cited

[41815] doi:10.3389/fimmu.2022.967951 [paper, data]

P2Y6 receptor-mediated signaling amplifies TLR-induced pro-inflammatory responses in microglia.

Journal: Frontiers in immunology

Status: data only, 1 dataset cited

[41816] doi:10.3389/fneur.2022.901179 [paper]

Identification of the molecular subgroups in Alzheimer's disease by transcriptomic data.

Journal: Frontiers in neurology

Status: data only

[41817] doi:10.3389/fnhum.2022.891411 [paper, repository]

Exploration of acupuncture therapy in the treatment of mild cognitive impairment based on the brain-gut axis theory.

Journal: Frontiers in human neuroscience

Authors' code: najoshi/sickle (MIT)

Status: code verified, 10 files readable

[41818] doi:10.3389/fnins.2022.917489 [paper, data]

RNA sequencing-based identification of the regulatory mechanism of microRNAs, transcription factors, and corresponding target genes involved in vascular dementia.

Journal: Frontiers in neuroscience

Status: data only, 1 dataset cited

[41819] doi:10.3389/fnins.2022.928841 [paper, repository]

On the encoding of natural music in computational models and human brains.

Journal: Frontiers in neuroscience

Authors' code: magenta/magenta (Apache-2.0)

Status: code verified, 344 files readable, 2 matches

[41820] doi:10.3389/fnins.2022.945037 [paper, repository]

MAP-SNN: Mapping spike activities with multiplicity, adaptability, and plasticity into bio-plausible spiking neural networks.

Journal: Frontiers in neuroscience

Authors' code: Tab-ct/MAP-SNN (no license)

Status: code verified, 5 files readable

[41821] doi:10.3390/brainsci12101267 [paper, data]

Identification and Characterization of Elevated Expression of Transferrin and Its Receptor TfR1 in Mouse Models of Depression.

Journal: Brain sciences

Status: data only, 1 dataset cited

[41822] doi:10.3390/brainsci12101269 [paper]

Volitional Generation of Reproducible, Efficient Temporal Patterns.

Journal: Brain sciences

Status: code on request

[41823] doi:10.7554/elife.74478 [paper, repository]

Stability of motor representations after paralysis.

Journal: eLife

Authors' code: AndersenLab-Caltech/fingers_rsa (GPL-3.0)

Status: code verified, 15 files readable, 3 matches

[41824] doi:10.7554/elife.74708 [paper, repository]

Distance estimation from monocular cues in an ethological visuomotor task.

Journal: eLife

Authors' code: nielllab/nlab-behavior (no license)

Status: code verified, 28 files readable, 3 matches

[41825] doi:10.7554/elife.78108 [paper, repository]

Frequency-specific neural signatures of perceptual content and perceptual stability.

Journal: eLife

Authors' code: figshare 19375910 (CC-BY-4.0)

Status: code verified

Monday, 19 September 2022 (18 papers)

[41826] doi:10.1002/glia.24274 [paper]

Defining the pig microglial transcriptome reveals its core signature, regional heterogeneity, and similarity with human and rodent microglia.

Journal: Glia

Status: data only

[41827] doi:10.1007/s00401-022-02491-8 [paper, data]

Stress-inducible phosphoprotein 1 (HOP/STI1/STIP1) regulates the accumulation and toxicity of α-synuclein in vivo.

Journal: Acta neuropathologica

Status: data only, 2 datasets cited

[41828] doi:10.1016/j.crmeth.2022.100296 [paper]

Laser stimulation of the skin for quantitative study of decision-making and motivation.

Journal: Cell reports methods

Status: code on request

[41829] doi:10.1016/j.crmeth.2022.100297 [paper, repository]

Deep-learning analysis of micropattern-based organoids enables high-throughput drug screening of Huntington's disease models.

Journal: Cell reports methods

Authors' code: jjmetzger/organoid_screen_analysis (no license), Zenodo 7009263 (other-open)

Status: code verified, 5 files readable, 1 match

[41830] doi:10.1038/s41467-022-33204-0 [paper, repository]

Flexible cue anchoring strategies enable stable head direction coding in both sighted and blind animals.

Journal: Nature communications

Authors' code: kadjitaa/research (GPL-3.0)

Status: code verified, 9 files readable, 1 match

[41831] doi:10.1038/s41467-022-33245-5 [paper, repository]

Causal contribution of optic flow signal in Macaque extrastriate visual cortex for roll perception.

Journal: Nature communications

Authors' code: casaboy/Roll-perception (no license)

Status: code verified, 66 files readable, 3 matches

[41832] doi:10.1038/s41467-022-33249-1 [paper, repository]

Transformation of primary sensory cortical representations from layer 4 to layer 2.

Journal: Nature communications

Authors' code: peronlab/two_whisker_voelcker_2022 (no license)

Status: code verified, 26 files readable, 5 matches

[41833] doi:10.1073/pnas.2201194119 [paper, data]

Active neural coordination of motor behaviors with internal states.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 1 dataset cited

[41834] doi:10.1073/pnas.2201304119 [paper, repository]

Multilevel development of cognitive abilities in an artificial neural network.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: ppsp-team/epigenesys (no license)

Status: code verified, 19 files readable, 6 matches

[41835] doi:10.1073/pnas.2207052119 [paper, repository]

Brain dysfunction during warming is linked to oxygen limitation in larval zebrafish.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: figshare 19640805 (CC-BY-4.0)

Status: code verified, 2 files readable, 1 match

[41836] doi:10.1111/psyp.14180 [paper, repository]

Is the Contralateral Delay Activity (CDA) a robust neural correlate for Visual Working Memory (VWM) tasks? A reproducibility study.

Journal: Psychophysiology

Authors' code: royyannick/EEG-CDA-Review (MIT)

Status: code verified, 11 files readable, 2 matches

[41837] doi:10.1186/s13041-022-00967-y [paper, data]

Stimulation of protein synthesis by optogenetic and chemical induction of excitatory synaptic plasticity in hippocampal somatostatin interneurons.

Journal: Molecular brain

Status: data only, 1 dataset cited

[41838] doi:10.1371/journal.pcbi.1010418 [paper, repository]

Synaptic balancing: A biologically plausible local learning rule that provably increases neural network noise robustness without sacrificing task performance.

Journal: PLoS computational biology

Authors' code: chris-stock/synaptic-balancing (no license)

Status: code verified, 37 files readable, 1 match

[41839] doi:10.1371/journal.pone.0273501 [paper, repository]

A novel machine learning-based approach for the detection and analysis of spontaneous synaptic currents.

Journal: PloS one

Authors' code: Digusil/openseapy (Apache-2.0)

Status: code verified, 22 files readable, 3 matches

[41840] doi:10.1590/acb370603 [paper, data]

The neuroprotective effects of Lutongkeli in traumatic brain injury rats by anti-apoptosis mechanism.

Journal: Acta cirurgica brasileira

Status: data only, 1 dataset cited

[41841] doi:10.26508/lsa.202201522 [paper, repository]

A critique of the hypothesis that CA repeats are primary targets of neuronal MeCP2.

Journal: Life science alliance

Authors' code: kashyapchhatbar/MeCP2_2022_manuscript (no license), Zenodo 6997675 (other-open)

Status: code verified, 37 files readable, 4 matches

[41842] doi:10.3390/e24091320 [paper, repository]

Opinion Polarization in Human Communities Can Emerge as a Natural Consequence of Beliefs Being Interrelated.

Journal: Entropy (Basel, Switzerland)

Authors' code: comses.net/codebases/2ccbae5e-d51c-41ed-80c2-5e4b33c4e9c0 (no license)

Status: code verified

[41843] doi:10.3390/s22187094 [paper, data]

Gait Detection from a Wrist-Worn Sensor Using Machine Learning Methods: A Daily Living Study in Older Adults and People with Parkinson's Disease.

Journal: Sensors (Basel, Switzerland)

Status: data only, 2 datasets cited

Sunday, 18 September 2022 (2 papers)

[41844] doi:10.1016/j.ynirp.2022.100133 [paper, repository]

Mediating effect of pubertal stages on the family environment and neurodevelopment: An open-data replication and multiverse analysis of an ABCD Study&lt;sup&gt;®&lt;/sup&gt;.

Journal: Neuroimage. Reports

Authors' code: Zenodo 6819653 (other-open), demidenm/abcd_envbrainpubert_replicateextend (no license)

Status: code verified, 18 files readable, 17 matches

[41845] doi:10.1111/mec.16686 [paper, repository]

A complete absence of indirect genetic effects on brain gene expression in a highly social context.

Journal: Molecular ecology

Authors' code: MO-Katy/IGEvDGE_ClonalRaiderAnt (no license)

Status: code verified, 2 files readable

Saturday, 17 September 2022 (16 papers)

[41846] doi:10.1007/s00429-022-02561-3 [paper, repository]

In vivo probabilistic atlas of white matter tracts of the human subthalamic area combining track density imaging and optimized diffusion tractography.

Journal: Brain structure & function

Authors' code: Zenodo 6832797 (CC-BY-4.0)

Status: code verified

[41847] doi:10.1007/s00429-022-02565-z [paper, repository]

A comparative study of the superior longitudinal fasciculus subdivisions between neonates and young adults.

Journal: Brain structure & function

Authors' code: data.mendeley.com/datasets/5yymds8v5b (no license)

Status: code verified

[41848] doi:10.1016/j.crneur.2022.100056 [paper, repository]

Nonlinear EEG signatures of mind wandering during breath focus meditation.

Journal: Current research in neurobiology

Authors' code: y-q-l/MW-BF-NL (no license)

Status: code verified, 17 files readable, 2 matches

[41849] doi:10.1016/j.isci.2022.105159 [paper]

Taste cues elicit prolonged modulation of feeding behavior in <i>Drosophila</i>.

Journal: iScience

Status: code on request

[41850] doi:10.1016/j.xhgg.2022.100143 [paper, repository]

A scalable Bayesian functional GWAS method accounting for multivariate quantitative functional annotations with applications for studying Alzheimer disease.

Journal: HGG advances

Authors' code: yanglab-emory/BFGWAS_QUANT (no license), bvilhjal/ldpred (MIT)

Status: code verified, 526 files readable, 3 matches

[41851] doi:10.1038/s41389-022-00433-3 [paper, data]

PFKFB4 interacts with FBXO28 to promote HIF-1α signaling in glioblastoma.

Journal: Oncogenesis

Status: data only, 1 dataset cited

[41852] doi:10.1038/s41398-022-02152-0 [paper]

Prediction of remission among patients with a major depressive disorder based on the resting-state functional connectivity of emotion regulation networks.

Journal: Translational psychiatry

Status: code on request

[41853] doi:10.1038/s41467-022-33139-6 [paper, data]

Infralimbic medial prefrontal cortex signalling to calbindin 1 positive neurons in posterior basolateral amygdala suppresses anxiety- and depression-like behaviours.

Journal: Nature communications

Status: data only, 2 datasets cited

[41854] doi:10.1038/s41467-022-33170-7 [paper, repository]

The immune landscape of human thymic epithelial tumors.

Journal: Nature communications

Authors' code: jacoblevine/PhenoGraph (MIT), ginberg/xshift_operator (no license), ShobiStassen/PARC (MIT), 10XGenomics/cellranger (MIT), coletrapnell-lab.github.io/monocle-release (no license)

Status: code verified, 811 files readable, 6 matches

[41855] doi:10.1038/s41598-022-19804-2 [paper, repository]

Explainable machine learning analysis reveals sex and gender differences in the phenotypic and neurobiological markers of Cannabis Use Disorder.

Journal: Scientific reports

Authors' code: explainable-cannabis/explainable-cannabis-paper (no license)

Status: code verified, 7 files readable, 9 matches

[41856] doi:10.1038/s42003-022-03949-x [paper]

Frontoparietal connectivity as a product of convergent evolution in rodents and primates: functional connectivity topologies in grey squirrels, rats, and marmosets.

Journal: Communications biology

Status: code on request

[41857] doi:10.1093/braincomms/fcac236 [paper, repository]

Microstructural deficits of the thalamus in major depressive disorder.

Journal: Brain communications

Authors' code: mezera/mrQ (MIT), OSF 6vpks (no license)

Status: code verified, 399 files readable, 3 matches

[41858] doi:10.1111/psyp.14181 [paper, data]

Irrelevant sights and sounds require spatial suppression: ERP evidence.

Journal: Psychophysiology

Status: data only, 1 dataset cited

[41859] doi:10.1155/2022/7843863 [paper, data]

TUG1/MAZ/FTH1 Axis Attenuates the Antiglioma Effect of Dihydroartemisinin by Inhibiting Ferroptosis.

Journal: Oxidative medicine and cellular longevity

Status: data only, 2 datasets cited

[41860] doi:10.1186/s12974-022-02589-6 [paper]

Genetic targeting or pharmacological inhibition of galectin-3 dampens microglia reactivity and delays retinal degeneration.

Journal: Journal of neuroinflammation

Status: data only

[41861] doi:10.3390/cells11182905 [paper, data]

Human Stem Cell-Derived TRPV1-Positive Sensory Neurons: A New Tool to Study Mechanisms of Sensitization.

Journal: Cells

Status: data only, 1 dataset cited

Friday, 16 September 2022 (23 papers)

[41862] doi:10.1002/acn3.51647 [paper]

A machine-learning approach for predicting impaired consciousness in absence epilepsy.

Journal: Annals of clinical and translational neurology

Status: code on request

[41863] doi:10.1016/j.dcn.2022.101152 [paper, data]

Early stressful experiences are associated with reduced neural responses to naturalistic emotional and social content in children.

Journal: Developmental cognitive neuroscience

Status: data only, 1 dataset cited

[41864] doi:10.1038/s41386-022-01456-5 [paper, repository]

Genome-wide Mendelian randomization identifies actionable novel drug targets for psychiatric disorders.

Journal: Neuropsychopharmacology : official publication of the American College of Neuropsychopharmacology

Authors' code: mrcieu/mrinstruments (no license)

Status: code verified, 12 files readable, 2 matches

[41865] doi:10.1038/s41398-022-02144-0 [paper, data]

Identification of a pleiotropic effect of ADIPOQ on cardiac dysfunction and Alzheimer's disease based on genetic evidence and health care records.

Journal: Translational psychiatry

Status: data only, 1 dataset cited

[41866] doi:10.1038/s41398-022-02155-x [paper, repository]

Fitness is positively associated with hippocampal formation subfield volumes in schizophrenia: a multiparametric magnetic resonance imaging study.

Journal: Translational psychiatry

Authors' code: OSF tr3nx (no license)

Status: code verified, 5 files readable, 3 matches

[41867] doi:10.1038/s41467-022-33010-8 [paper, repository]

A temporal sequence of thalamic activity unfolds at transitions in behavioral arousal state.

Journal: Nature communications

Authors' code: bsetzer96/thalamic_arousal_sequence_repository (no license)

Status: code verified, 2 files readable

[41868] doi:10.1038/s41598-022-18805-5 [paper, repository]

Predicting conversion to Alzheimer's disease in individuals with Mild Cognitive Impairment using clinically transferable features.

Journal: Scientific reports

Authors' code: ingryy/AD_converison (no license)

Status: empty repository, 1 file readable

[41869] doi:10.1126/sciadv.adc9317 [paper, data]

Brain lipidomics: From functional landscape to clinical significance.

Journal: Science advances

Status: data only, 1 dataset cited

[41870] doi:10.1186/s12868-022-00736-6 [paper, data]

A circular RNA derived from GLIS3 accelerates the proliferation of glioblastoma cells through competitively binding with miR-449c-5p to upregulate CAPG and GLIS3.

Journal: BMC neuroscience

Status: data only, 8 datasets cited

[41871] doi:10.1186/s12917-022-03443-w [paper, repository]

Congenital tremor and splay leg in piglets - insights into the virome, local cytokine response, and histology.

Journal: BMC veterinary research

Authors' code: jhayer/nf-metavir (MIT)

Status: empty repository, 2 files readable

[41872] doi:10.1186/s12967-022-03610-5 [paper, data]

Xeno-free induced pluripotent stem cell-derived neural progenitor cells for in vivo applications.

Journal: Journal of translational medicine

Status: data only, 1 dataset cited

[41873] doi:10.1186/s40708-022-00170-8 [paper, data]

Epilepsy seizure prediction with few-shot learning method.

Journal: Brain informatics

Status: data only, 1 dataset cited

[41874] doi:10.1556/2006.2022.00067 [paper]

Brain default mode network mediates the association between negative perfectionism and exercise dependence.

Journal: Journal of behavioral addictions

Status: code on request

[41875] doi:10.3389/fnbeh.2022.953303 [paper, repository]

Cerebellar and basal ganglia motor network predicts trait depression and hyperactivity.

Journal: Frontiers in behavioral neuroscience

Authors' code: andersonwinkler/HCP (no license)

Status: code verified, 9 files readable, 1 match

[41876] doi:10.3389/fnhum.2022.915815 [paper, data]

Using linear parameter varying autoregressive models to measure cross frequency couplings in EEG signals.

Journal: Frontiers in human neuroscience

Status: data only, 1 dataset cited

[41877] doi:10.3389/fnins.2022.985709 [paper, data]

Deep learning-based self-induced emotion recognition using EEG.

Journal: Frontiers in neuroscience

Status: data only, 1 dataset cited

[41878] doi:10.3389/fphar.2022.1010785 [paper, data]

Exercise improves choroid plexus epithelial cells metabolism to prevent glial cell-associated neurodegeneration.

Journal: Frontiers in pharmacology

Status: data only, 2 datasets cited

[41879] doi:10.3390/ijms231810820 [paper, data]

Use of a Molecular Switch Probe to Activate or Inhibit GIRK1 Heteromers In Silico Reveals a Novel Gating Mechanism.

Journal: International journal of molecular sciences

Status: data only, 2 datasets cited

[41880] doi:10.3390/nu14183820 [paper]

Associations of Human Milk Oligosaccharides with Infant Brain Tissue Organization and Regional Blood Flow at 1 Month of Age.

Journal: Nutrients

Status: code on request

[41881] doi:10.7554/elife.67141 [paper, data]

7-Dehydrocholesterol-derived oxysterols cause neurogenic defects in Smith-Lemli-Opitz syndrome.

Journal: eLife

Status: data only, 2 datasets cited

[41882] doi:10.7554/elife.77259 [paper, data]

Sociosexual behavior requires both activating and repressive roles of <i>Tfap2e/</i>AP-2ε in vomeronasal sensory neurons.

Journal: eLife

Status: data only, 1 dataset cited

[41883] doi:10.7554/elife.77430 [paper, repository]

A partially nested cortical hierarchy of neural states underlies event segmentation in the human brain.

Journal: eLife

Authors' code: tuvalu.santafe.edu/waaronc/wsbm (no license), lgeerligs/NestedHierarchy (no license)

Status: code verified, 44 files readable, 13 matches

[41884] doi:10.7554/elife.80015 [paper, data]

Neural signatures of auditory hypersensitivity following acoustic trauma.

Journal: eLife

Status: code on request, 1 dataset cited

Thursday, 15 September 2022 (28 papers, 4 on this page)

[41885] doi:10.1002/hbm.26076 [paper, data]

Age-associated sex and asymmetry differentiation in hemispheric and lobar cortical ribbon complexity across adulthood: A UK Biobank imaging study.

Journal: Human brain mapping

Status: data only, 1 dataset cited

[41886] doi:10.1002/hbm.26077 [paper]

Deep multimodal predictome for studying mental disorders.

Journal: Human brain mapping

Status: code on request

[41887] doi:10.1016/j.dib.2022.108603 [paper, data]

Dataset of middle cerebral artery blood flow stability in response to high-definition transcranial electrical stimulation.

Journal: Data in brief

Status: data only, 2 datasets cited

[41888] doi:10.1016/j.isci.2022.105141 [paper]

Schwann cells-derived exosomal miR-21 participates in high glucose regulation of neurite outgrowth.

Journal: iScience

Status: code on request

Also: by category, author, journal, institution, tool or dataset; the search; the DOI lookup for any paper read, with or without a page.