Every paper, by date: page 188

44,644 papers with a page: 24,189 with their authors' code, 4,955 with code on request, 15,495 with data only. The most recent first, 224 a page. Page 188 of 200: 15 September 2022 to 6 September 2022.

Thursday, 15 September 2022 (28 papers, 24 on this page)

[41889] doi:10.1038/s41390-022-02283-6 [paper, repository]

Metabolomic and exposomic biomarkers of risk of future neurodevelopmental delay in human milk.

Journal: Pediatric research

Authors' code: BDNav/PeakVetting (no license)

Status: code verified, 3 files readable, 2 matches

[41890] doi:10.1038/s41398-022-02145-z [paper, repository]

Are infections associated with cognitive decline and neuroimaging outcomes? A historical cohort study using data from the UK Biobank study linked to electronic health records.

Journal: Translational psychiatry

Authors' code: RutendoMuzambi/InfectionsCognitionNeuroimaging (no license)

Status: code verified, 9 files readable, 4 matches

[41891] doi:10.1038/s41467-022-33022-4 [paper, repository]

Transcriptional dynamics of murine motor neuron maturation in vivo and in vitro.

Journal: Nature communications

Authors' code: gifford-lab/motor-neuron-maturation (no license)

Status: code verified, 9 files readable, 3 matches

[41892] doi:10.1038/s41536-022-00241-8 [paper, data]

Induction of functional xeno-free MSCs from human iPSCs via a neural crest cell lineage.

Journal: NPJ Regenerative medicine

Status: data only, 1 dataset cited

[41893] doi:10.1038/s41597-022-01682-y [paper, repository]

An Open MRI Dataset For Multiscale Neuroscience.

Journal: Scientific data

Authors' code: MICA-LAB/micapipe (GPL-3.0), MICA-MNI/micapipe (GPL-3.0), Zenodo 23607365 (MIT), cyoren/sc-fc_coupling (MIT), Zenodo 23607364 (MIT)

Status: code verified, 254 files readable, 14 matches

[41894] doi:10.1038/s41598-022-19041-7 [paper, repository]

Repeated exposure to either consistently spatiotemporally congruent or consistently incongruent audiovisual stimuli modulates the audiovisual common-cause prior.

Journal: Scientific reports

Authors' code: OSF amrp7 (no license)

Status: code verified, 49 files readable, 18 matches

[41895] doi:10.1038/s41598-022-19525-6 [paper, data]

PARP3 supervises G9a-mediated repression of adhesion and hypoxia-responsive genes in glioblastoma cells.

Journal: Scientific reports

Status: data only, 1 dataset cited

[41896] doi:10.1038/s41598-022-19771-8 [paper, repository]

A robust spike sorting method based on the joint optimization of linear discrimination analysis and density peaks.

Journal: Scientific reports

Authors' code: EveyZhang/LDA-DP (no license)

Status: code verified, 12 files readable

[41897] doi:10.1038/s42003-022-03881-0 [paper]

Magnetic resonance imaging analysis predicts nanoparticle concentration delivered to the brain parenchyma.

Journal: Communications biology

Status: code on request

[41898] doi:10.1101/gr.276839.122 [paper, repository]

A butterfly pan-genome reveals that a large amount of structural variation underlies the evolution of chromatin accessibility.

Journal: Genome research

Authors' code: genome.cshlp.org/lookup/suppl (no license), StevenVB12/Genomics (no license)

Status: code verified, 38 files readable, 2 matches

[41899] doi:10.1152/physrev.00061.2021 [paper, data]

A systematic review of the biological mediators of fat taste and smell.

Journal: Physiological reviews

Status: data only, 1 dataset cited

[41900] doi:10.1186/s12888-022-04118-4 [paper, repository]

Brain connectomes in youth at risk for serious mental illness: an exploratory analysis.

Journal: BMC psychiatry

Authors' code: mklasby/brain-connectomes-in-youth-at-risk (no license)

Status: code verified, 41 files readable, 6 matches

[41901] doi:10.1186/s12934-022-01914-1 [paper, data]

Design and validation of recombinant protein standards for quantitative Western blot analysis of cannabinoid CB₁ receptor density in cell membranes: an alternative to radioligand binding methods.

Journal: Microbial cell factories

Status: data only, 1 dataset cited

[41902] doi:10.1371/journal.pcbi.1010479 [paper, repository]

Optimal control methods for nonlinear parameter estimation in biophysical neuron models.

Journal: PLoS computational biology

Authors' code: niragkadakia/oc-dspe (no license)

Status: code verified, 22 files readable, 3 matches

[41903] doi:10.3389/fimmu.2022.919444 [paper, data]

Role of complement C1q/C3-CR3 signaling in brain injury after experimental intracerebral hemorrhage and the effect of minocycline treatment.

Journal: Frontiers in immunology

Status: data only, 1 dataset cited

[41904] doi:10.3389/fnagi.2022.980636 [paper]

Long-term gamma transcranial alternating current stimulation improves the memory function of mice with Alzheimer's disease.

Journal: Frontiers in aging neuroscience

Status: code on request

[41905] doi:10.3389/fnins.2022.927111 [paper, data]

Brain and brain-heart Granger causality during wakefulness and sleep.

Journal: Frontiers in neuroscience

Status: data only, 1 dataset cited

[41906] doi:10.3389/fnins.2022.984036 [paper, repository]

OMMR: Co-registration toolbox of OPM-MEG and MRI.

Journal: Frontiers in neuroscience

Authors' code: Zenodo 6958134 (no license)

Status: code verified

[41907] doi:10.3389/fnsys.2022.983147 [paper, repository]

Selective connectivity enhances storage capacity in attractor models of memory function.

Journal: Frontiers in systems neuroscience

Authors' code: Facuemina/Selective-Connectivity-2022 (no license)

Status: code verified, 26 files readable, 3 matches

[41908] doi:10.3389/fpsyg.2022.901022 [paper, data]

Brain gain-Is the cognitive performance of domestic hens affected by a functional polymorphism in the serotonin transporter gene?

Journal: Frontiers in psychology

Status: data only, 1 dataset cited

[41909] doi:10.3390/biomedicines10092295 [paper, repository]

MRI-Guided Electrode Implantation for Chronic Intracerebral Recordings in a Rat Model of Post-Traumatic Epilepsy-Challenges and Gains.

Journal: Biomedicines

Authors' code: unfoldedmap.org (no license), UEFepilepsyAIVI/CortexMap (no license)

Status: code verified, 13 files readable, 1 match

[41910] doi:10.3390/ijms231810774 [paper, data]

Defining Specific Cell States of MPTP-Induced Parkinson's Disease by Single-Nucleus RNA Sequencing.

Journal: International journal of molecular sciences

Status: data only, 1 dataset cited

[41911] doi:10.7554/elife.72802 [paper, repository]

3D optogenetic control of arteriole diameter in vivo.

Journal: eLife

Authors' code: poherron/vessel-diameter-code (GPL-3.0)

Status: code verified, 9 files readable

[41912] doi:10.7554/elife.75691 [paper, repository]

Shared mechanisms of auditory and non-auditory vocal learning in the songbird brain.

Journal: eLife

Authors' code: figshare 20183357 (CC-BY-4.0), figshare 20183360 (CC-BY-4.0), figshare 20183339 (CC-BY-4.0), figshare 20183327 (CC-BY-4.0), figshare 20183336 (CC-BY-4.0), figshare 20183324 (CC-BY-4.0), figshare 20183315 (CC-BY-4.0), figshare 20183303 (CC-BY-4.0), figshare 20183306 (CC-BY-4.0), figshare 20183309 (CC-BY-4.0), figshare 20183312 (CC-BY-4.0)

Status: code verified, 11 files readable, 1 match

Wednesday, 14 September 2022 (25 papers)

[41913] doi:10.1002/brb3.2762 [paper, repository]

Intracortical myelin in individuals with alcohol use disorder: An initial proof-of-concept study.

Journal: Brain and behavior

Authors' code: OSF pfwg6 (no license)

Status: code verified, 9 files readable, 4 matches

[41914] doi:10.1002/hbm.26073 [paper, repository]

Early effect of thrombolysis on structural brain network organisation after anterior-circulation stroke in the randomized WAKE-UP trial.

Journal: Human brain mapping

Authors' code: csi-hamburg/WU-NeMo-Topology (no license)

Status: code verified, 32 files readable, 4 matches

[41915] doi:10.1016/j.apsb.2022.09.007 [paper, data]

CYP1B1-derived epoxides modulate the TRPA1 channel in chronic pain.

Journal: Acta pharmaceutica Sinica. B

Status: data only, 1 dataset cited

[41916] doi:10.1016/j.xgen.2022.100177 [paper, repository]

Dual genome-wide coding and lncRNA screens in neural induction of induced pluripotent stem cells.

Journal: Cell genomics

Authors' code: mhorlbeck/ScreenProcessing (no license), josephreplogle/guide_calling (MIT), ijuric/MAPS (no license), symbiologist/dualgenomewide (MIT), Zenodo 6815996 (other-open), ENCODE-DCC/chip-seq-pipeline2 (MIT), mikelove/tximport (no license), macs3-project/MACS (BSD-3-Clause), ncbi.nlm.nih.gov/geo/query (no license)

Status: code verified, 413 files readable, 11 matches

[41917] doi:10.1016/j.xpro.2022.101701 [paper, repository]

Versatile treadmill system for measuring locomotion and neural activity in head-fixed mice.

Journal: STAR protocols

Authors' code: Neurune/TreadmillSystem (no license), Zenodo 6992230 (other-open)

Status: code verified, 12 files readable, 5 matches

[41918] doi:10.1038/s41467-022-33085-3 [paper, data]

Mettl3-dependent m⁶A modification attenuates the brain stress response in Drosophila.

Journal: Nature communications

Status: data only, 3 datasets cited

[41919] doi:10.1038/s41467-022-33115-0 [paper, repository]

Optogenetic control of apical constriction induces synthetic morphogenesis in mammalian tissues.

Journal: Nature communications

Authors' code: mebisuya/OptoShroom3 (no license), Zenodo 7031023 (other-open), Zenodo 7031024 (other-open)

Status: code verified, 105 files readable, 10 matches

[41920] doi:10.1038/s41586-022-05196-w [paper, repository]

Distinguishing externally from saccade-induced motion in visual cortex.

Journal: Nature

Authors' code: Satoru-k-miura/Miura-and-Scanziani-Nature-2022 (no license)

Status: code verified, 29 files readable, 11 matches

[41921] doi:10.1038/s41598-022-19019-5 [paper, repository]

Network-based integration of multi-omics data for clinical outcome prediction in neuroblastoma.

Journal: Scientific reports

Authors' code: nomoresomethingwentwrong/PSN_Fusion (no license)

Status: code verified, 20 files readable, 14 matches

[41922] doi:10.1038/s41598-022-19157-w [paper, data]

Investigating molecular transport in the human brain from MRI with physics-informed neural networks.

Journal: Scientific reports

Status: data only, 2 datasets cited

[41923] doi:10.1038/s41598-022-19356-5 [paper, repository]

Deep neural networks allow expert-level brain meningioma segmentation and present potential for improvement of clinical practice.

Journal: Scientific reports

Authors' code: neuronets/nobrainer-models (no license)

Status: code verified, 37 files readable, 3 matches

[41924] doi:10.1038/s42003-022-03876-x [paper, data]

Disengaging spinal afferent nerve communication with the brain in live mice.

Journal: Communications biology

Status: data only, 1 dataset cited

[41925] doi:10.1093/braincomms/fcac233 [paper, data]

Regional rather than global brain age mediates cognitive function in cerebral small vessel disease.

Journal: Brain communications

Status: data only, 1 dataset cited

[41926] doi:10.1098/rsob.220037 [paper, repository]

Maintaining robust size across environmental conditions through plastic brain growth dynamics.

Journal: Open biology

Authors' code: doi:10.6084/m9.figshare.c.6189732 (no license)

Status: code found, still to be checked

[41927] doi:10.1186/s12915-022-01404-1 [paper, repository]

Epigenetic machinery is functionally conserved in cephalopods.

Journal: BMC biology

Authors' code: SadlerEdepli-NYUAD/Macchi-et-al-2022-Cephalopod-DNA-Methylation (no license), doi:10.5061/dryad.d51c5b069 (no license)

Status: code verified, 5 files readable, 6 matches

[41928] doi:10.1186/s12974-022-02587-8 [paper, data]

Captopril alleviates epilepsy and cognitive impairment by attenuation of C3-mediated inflammation and synaptic phagocytosis.

Journal: Journal of neuroinflammation

Status: data only, 2 datasets cited

[41929] doi:10.1186/s13059-022-02767-y [paper, repository]

Comprehensive and scalable quantification of splicing differences with MntJULiP.

Journal: Genome biology

Authors' code: Splicebox/Mntjulip (GPL-3.0), Zenodo 7048713 (CC-BY-4.0), Zenodo 6599349 (CC-BY-4.0)

Status: code verified, 114 files readable, 3 matches

[41930] doi:10.1186/s13578-022-00892-6 [paper, data]

PEX5R/Trip8b-HCN2 channel regulating neuroinflammation involved in perioperative neurocognitive disorders.

Journal: Cell & bioscience

Status: data only, 1 dataset cited

[41931] doi:10.1371/journal.pbio.3001798 [paper, data]

A prosthesis utilizing natural vestibular encoding strategies improves sensorimotor performance in monkeys.

Journal: PLoS biology

Status: data only, 1 dataset cited

[41932] doi:10.1371/journal.pcbi.1010464 [paper, repository]

A normative model of peripersonal space encoding as performing impact prediction.

Journal: PLoS computational biology

Authors' code: ctu-vras/pps-normative-model (GPL-3.0)

Status: code verified, 7 files readable

[41933] doi:10.1523/eneuro.0069-22.2022 [paper, repository]

Fast Event-Related Mapping of Population Fingertip Tuning Properties in Human Sensorimotor Cortex at 7T.

Journal: eNeuro

Authors' code: vistalab/vistasoft (no license), Zenodo 1299483 (other-open), justingardner/mrtools (other)

Status: code verified, 3,271 files readable, 5 matches

[41934] doi:10.3389/fnmol.2022.926791 [paper, data]

TNAP-a potential cytokine in the cerebral inflammation in spastic cerebral palsy.

Journal: Frontiers in molecular neuroscience

Status: data only, 1 dataset cited

[41935] doi:10.3389/fnut.2022.972100 [paper, data]

Effects of physical distancing by COVID-19 pandemic on diet quality, neurological and immunological markers, and fecal microbiota of Brazilian older women.

Journal: Frontiers in nutrition

Status: data only, 1 dataset cited

[41936] doi:10.3390/s22186954 [paper, data]

A Comprehensive Analysis of the Validity and Reliability of the Perception Neuron Studio for Upper-Body Motion Capture.

Journal: Sensors (Basel, Switzerland)

Status: data only, 1 dataset cited

[41937] doi:10.7554/elife.78912 [paper, repository]

Learning of probabilistic punishment as a model of anxiety produces changes in action but not punisher encoding in the dmPFC and VTA.

Journal: eLife

Authors' code: MoghaddamLab/Jacobs2022-eLife (MIT)

Status: code verified, 12 files readable, 3 matches

Tuesday, 13 September 2022 (38 papers)

[41938] doi:10.1002/glia.24258 [paper, repository]

Control of Ca²⁺ signals by astrocyte nanoscale morphology at tripartite synapses.

Journal: Glia

Authors' code: modeldb:266928 (no license), modeldb:247694 (no license)

Status: code found, still to be checked

[41939] doi:10.1002/hbm.26064 [paper]

Test-retest reliability of diffusion tensor imaging scalars in 5-year-olds.

Journal: Human brain mapping

Status: code on request

[41940] doi:10.1002/hbm.26074 [paper, repository]

Diffusion magnetic resonance imaging connectome features are predictive of functional lateralization of semantic processing in the anterior temporal lobes.

Journal: Human brain mapping

Authors' code: Zahnert/Semantic-Processing (no license)

Status: code verified, 14 files readable, 4 matches

[41941] doi:10.1016/j.isci.2022.105102 [paper]

Neuroblasts contribute to oligodendrocytes generation upon demyelination in the adult mouse brain.

Journal: iScience

Status: code on request

[41942] doi:10.1016/j.nicl.2022.103187 [paper, repository]

Detection of lesions in the optic nerve with magnetic resonance imaging using a 3D convolutional neural network.

Journal: NeuroImage. Clinical

Authors' code: GerardMJuan/optic-nerve-3dcnn-ms (MIT)

Status: code verified, 14 files readable, 5 matches

[41943] doi:10.1016/j.nicl.2022.103190 [paper, data]

The longitudinal neural dynamics changes of whole brain connectome during natural recovery from poststroke aphasia.

Journal: NeuroImage. Clinical

Status: data only, 1 dataset cited

[41944] doi:10.1016/j.nicl.2022.103191 [paper, repository]

White matter alterations in chronic MDMA use: Evidence from diffusion tensor imaging and neurofilament light chain blood levels.

Journal: NeuroImage. Clinical

Authors' code: jziNeuro/DTI_MDMA_publication (no license)

Status: code verified, 2 files readable

[41945] doi:10.1016/j.xpro.2022.101673 [paper, repository]

Protocol to examine the neural basis of symbolic and non-symbolic quantity processing in human brain with fMRI.

Journal: STAR protocols

Authors' code: OSF b85xg (no license)

Status: code verified, 2 files readable

[41946] doi:10.1016/j.ynirp.2022.100131 [paper, repository]

Can you hear me now? Momentary increase in smartphone usage enhances neural processing of task-irrelevant sound tones.

Journal: Neuroimage. Reports

Authors' code: CODELABLEIDEN/Audio_tone_Smartphone_Outdoor_2022 (no license)

Status: code verified, 15 files readable, 4 matches

[41947] doi:10.1021/acs.jmedchem.2c00840 [paper, data]

Highly Potent and Selective Dopamine D₄ Receptor Antagonists Potentially Useful for the Treatment of Glioblastoma.

Journal: Journal of medicinal chemistry

Status: data only, 2 datasets cited

[41948] doi:10.1021/acsomega.2c04702 [paper, data]

Structure and Enzymatic Activity of an Intellectual Disability-Associated Ornithine Decarboxylase Variant, G84R.

Journal: ACS omega

Status: data only, 4 datasets cited

[41949] doi:10.1038/s41597-022-01607-9 [paper, repository]

A test-retest resting, and cognitive state EEG dataset during multiple subject-driven states.

Journal: Scientific data

Authors' code: fieldtriptoolbox.org/workshop/madrid2019 (no license)

Status: code verified

[41950] doi:10.1038/s41598-022-19275-5 [paper, repository]

Towards robust in vivo quantification of oscillating biomagnetic fields using Rotary Excitation based MRI.

Journal: Scientific reports

Authors' code: maximiliangram/Pulseq_tREX (MIT)

Status: empty repository, 2 files readable

[41951] doi:10.1038/s41598-022-19563-0 [paper, repository]

Bayesian dynamic profiling and optimization of important ranked energy from gray level co-occurrence (GLCM) features for empirical analysis of brain MRI.

Journal: Scientific reports

Authors' code: chengjun583/brainTumorRetrieval (no license), mathworks.com/matlabcentral/fileexchange (no license)

Status: code verified, 389 files readable

[41952] doi:10.1083/jcb.202112073 [paper, data]

Impaired XK recycling for importing manganese underlies striatal vulnerability in Huntington's disease.

Journal: The Journal of cell biology

Status: data only, 1 dataset cited

[41953] doi:10.1155/2022/3334145 [paper, data]

Cortistatin-14 Exerts Neuroprotective Effect Against Microglial Activation, Blood-brain Barrier Disruption, and Cognitive Impairment in Sepsis-associated Encephalopathy.

Journal: Journal of immunology research

Status: data only, 1 dataset cited

[41954] doi:10.1186/s12993-022-00196-2 [paper, repository]

Extended functional connectivity of convergent structural alterations among individuals with PTSD: a neuroimaging meta-analysis.

Journal: Behavioral and brain functions : BBF

Authors' code: NBCLab/meta-analysis_ptsd (Apache-2.0)

Status: code verified, 4 files readable

[41955] doi:10.1242/dmm.049418 [paper, repository]

Transcriptional targets of amyotrophic lateral sclerosis/frontotemporal dementia protein TDP-43 - meta-analysis and interactive graphical database.

Journal: Disease models & mechanisms

Authors' code: mcao051/TDP_LOF (MIT)

Status: code verified, 4 files readable, 2 matches

[41956] doi:10.1371/journal.pcbi.1010490 [paper, repository]

In the Body's Eye: The computational anatomy of interoceptive inference.

Journal: PLoS computational biology

Authors' code: embodied-computation-group/cardiac-active-inference (MIT)

Status: code verified, 33 files readable, 6 matches

[41957] doi:10.1371/journal.pcbi.1010506 [paper, repository]

Excitatory and inhibitory effects of HCN channel modulation on excitability of layer V pyramidal cells.

Journal: PLoS computational biology

Authors' code: modeldb:267293 (no license)

Status: code found, still to be checked

[41958] doi:10.1371/journal.pone.0269851 [paper, repository]

Transcranial direct current stimulation leads to faster acquisition of motor skills, but effects are not maintained at retention.

Journal: PloS one

Authors' code: dana-and-monsters/svipt-task-analysis (no license)

Status: code verified, 3 files readable

[41959] doi:10.1371/journal.pone.0272167 [paper, data]

Detection of sleep apnea from single-channel electroencephalogram (EEG) using an explainable convolutional neural network (CNN).

Journal: PloS one

Status: data only, 2 datasets cited

[41960] doi:10.3389/fcell.2022.969364 [paper, data]

Time and age dependent regulation of neuroinflammation in a rat model of mesial temporal lobe epilepsy: Correlation with human data.

Journal: Frontiers in cell and developmental biology

Status: data only, 1 dataset cited

[41961] doi:10.3389/fgene.2022.993387 [paper, data]

Methylmercury-induced DNA methylation-From epidemiological observations to experimental evidence.

Journal: Frontiers in genetics

Status: data only, 1 dataset cited

[41962] doi:10.3389/fneur.2022.971373 [paper, data]

Case report: Multiple brain tuberculomas after <i>in vitro</i> fertilization, embryo transfer, and abortion.

Journal: Frontiers in neurology

Status: data only, 1 dataset cited

[41963] doi:10.3389/fnimg.2022.947526 [paper, repository]

Investigating the contribution of cytoarchitecture to diffusion MRI measures in gray matter using histology.

Journal: Frontiers in neuroimaging

Authors' code: pnlbwh (no license)

Status: code verified

[41964] doi:10.3389/fnins.2022.791498 [paper, data]

Respiratory sinus arrhythmia during biofeedback is linked to persistent improvements in attention, short-term memory, and positive self-referential episodic memory.

Journal: Frontiers in neuroscience

Status: data only, 1 dataset cited

[41965] doi:10.3389/fnins.2022.975639 [paper, data]

Guiding visual attention in deep convolutional neural networks based on human eye movements.

Journal: Frontiers in neuroscience

Status: data only, 1 dataset cited

[41966] doi:10.3389/fpsyg.2022.674011 [paper, repository]

Strong displayed passion and preparedness of broadcaster in live streaming e-commerce increases consumers' neural engagement.

Journal: Frontiers in psychology

Authors' code: parralab.org/isc (no license)

Status: code verified

[41967] doi:10.3390/brainsci12091233 [paper, data]

A Parallel Feature Fusion Network Combining GRU and CNN for Motor Imagery EEG Decoding.

Journal: Brain sciences

Status: data only, 1 dataset cited

[41968] doi:10.3390/ijms231810651 [paper]

Evaluation of Disability Progression in Multiple Sclerosis via Magnetic-Resonance-Based Deep Learning Techniques.

Journal: International journal of molecular sciences

Status: code on request

[41969] doi:10.3390/s22186929 [paper]

A Personalized User Authentication System Based on EEG Signals.

Journal: Sensors (Basel, Switzerland)

Status: code on request

[41970] doi:10.34133/2022/9754876 [paper, data]

Superlow Power Consumption Artificial Synapses Based on WSe₂ Quantum Dots Memristor for Neuromorphic Computing.

Journal: Research (Washington, D.C.)

Status: data only, 1 dataset cited

[41971] doi:10.3892/etm.2022.11607 [paper, repository]

Transcriptome analysis in an AEG‑1‑deficient neuronal HT22 cell line.

Journal: Experimental and therapeutic medicine

Authors' code: novogene.cn (no license)

Status: code verified

[41972] doi:10.7554/elife.65536 [paper, data]

Neural effects of continuous theta-burst stimulation in macaque parietal neurons.

Journal: eLife

Status: data only, 1 dataset cited

[41973] doi:10.7554/elife.75038 [paper, repository]

Controllability boosts neural and cognitive signatures of changes-of-mind in uncertain environments.

Journal: eLife

Authors' code: marionrouault/actobscom (no license), figshare 13200128 (CC0-1.0)

Status: code verified, 7 files readable, 8 matches

[41974] doi:10.7554/elife.77411 [paper, repository]

The role of anterior insular cortex inputs to dorsolateral striatum in binge alcohol drinking.

Journal: eLife

Authors' code: dlhagger/AIC-DLS_Microstructure_Modeling (GPL-3.0)

Status: code verified, 3 files readable, 1 match

[41975] doi:10.7554/elife.78717 [paper, data]

Robust group- but limited individual-level (longitudinal) reliability and insights into cross-phases response prediction of conditioned fear.

Journal: eLife

Status: data only, 2 datasets cited

Monday, 12 September 2022 (27 papers)

[41976] doi:10.1002/hbm.26066 [paper, repository]

Brain age vector: A measure of brain aging with enhanced neurodegenerative disorder specificity.

Journal: Human brain mapping

Authors' code: Kecici/Brain-age-vector-construction (no license), ppmi-info.org (no license)

Status: code verified, 11 files readable, 2 matches

[41977] doi:10.1002/nbm.4815 [paper, data]

White matter microstructure and longitudinal relaxation time anisotropy in human brain at 3 and 7 T.

Journal: NMR in biomedicine

Status: data only, 2 datasets cited

[41978] doi:10.1007/s00018-022-04539-0 [paper]

Heterocomplexes between the atypical chemokine MIF and the CXC-motif chemokine CXCL4L1 regulate inflammation and thrombus formation.

Journal: Cellular and molecular life sciences : CMLS

Status: code on request

[41979] doi:10.1016/j.neuroimage.2022.119623 [paper, repository]

Open and reproducible neuroimaging: From study inception to publication.

Journal: NeuroImage

Authors' code: Zenodo 4295521 (MIT), Zenodo 6354036 (other-open), Zenodo 5910585 (GPL-2.0), Zenodo 5557588 (other-open), Zenodo 5120201 (Apache-2.0), Zenodo 4701527 (other-open), Zenodo 3233986 (CC-BY-4.0), Zenodo 3625000 (other-open), Zenodo 4495560 (CC-BY-SA-4.0), alan-turing-institute/the-turing-way (MIT), repronim/reproin (MIT), nipy/nibabel (MIT), datalad-handbook/book (CC-BY-SA-4.0), datalad/datalad-container (MIT), poldracklab/fitlins (Apache-2.0), nipy/heudiconv (Apache-2.0), bids-standard/bids-matlab (MIT), repronim/reprostim (MIT)

Status: code verified, 1,413 files readable, 7 matches

[41980] doi:10.1038/s41467-022-32246-8 [paper, repository]

Reactivating hippocampal-mediated memories during reconsolidation to disrupt fear.

Journal: Nature communications

Authors' code: bladonjay/RamirezLabCode (no license)

Status: code verified, 10 files readable, 2 matches

[41981] doi:10.1038/s41467-022-32848-2 [paper, repository]

An analysis modality for vascular structures combining tissue-clearing technology and topological data analysis.

Journal: Nature communications

Authors' code: TGFbeta/kubota_tgfb (MIT), ChristophKirst/ClearMap2 (GPL-3.0), nagoya-sysbiol/cubic_analysis (MIT), stnava.github.io/ants (no license)

Status: code verified, 988 files readable, 3 matches

[41982] doi:10.1038/s41467-022-32994-7 [paper, data]

A high-performance genetically encoded fluorescent indicator for in vivo cAMP imaging.

Journal: Nature communications

Status: code on request, 12 datasets cited

[41983] doi:10.1038/s41531-022-00382-z [paper]

Basal ganglia engagement during REM sleep movements in Parkinson's disease.

Journal: NPJ Parkinson's disease

Status: code on request

[41984] doi:10.1038/s41556-022-00977-x [paper, data]

Brain-enriched RagB isoforms regulate the dynamics of mTORC1 activity through GATOR1 inhibition.

Journal: Nature cell biology

Status: data only, 1 dataset cited

[41985] doi:10.1038/s41598-022-19203-7 [paper, repository]

Brain-correlates of processing local dependencies within a statistical learning paradigm.

Journal: Scientific reports

Authors' code: Zenodo 4704476 (Apache-2.0), kaggle.com/vtsogli/fmri-local-dependencies-statistical-learning (no license)

Status: code verified

[41986] doi:10.1038/s41598-022-19465-1 [paper, data]

DACBT: deep learning approach for classification of brain tumors using MRI data in IoT healthcare environment.

Journal: Scientific reports

Status: data only, 2 datasets cited

[41987] doi:10.1038/s41598-022-19665-9 [paper, repository]

Musical training refines audiovisual integration but does not influence temporal recalibration.

Journal: Scientific reports

Authors' code: OSF 4hyt2 (no license)

Status: code verified, 29 files readable, 5 matches

[41988] doi:10.1073/pnas.2119630119 [paper, data]

A TRPM7 mutation linked to familial trigeminal neuralgia: Omega current and hyperexcitability of trigeminal ganglion neurons.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 1 dataset cited

[41989] doi:10.1073/pnas.2205209119 [paper, data]

Layer 5 of cortex innervates the thalamic reticular nucleus in mice.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 1 dataset cited

[41990] doi:10.1073/pnas.2206147119 [paper, data]

A kinase-independent function of cyclin-dependent kinase 6 promotes outer radial glia expansion and neocortical folding.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 1 dataset cited

[41991] doi:10.1186/s12938-022-01033-3 [paper, data]

Comparison of deep transfer learning algorithms and transferability measures for wearable sleep staging.

Journal: Biomedical engineering online

Status: data only, 1 dataset cited

[41992] doi:10.1186/s12974-022-02586-9 [paper, data]

Chronic delta-9-tetrahydrocannabinol (THC) treatment counteracts SIV-induced modulation of proinflammatory microRNA cargo in basal ganglia-derived extracellular vesicles.

Journal: Journal of neuroinflammation

Status: data only, 1 dataset cited

[41993] doi:10.1186/s13395-022-00305-9 [paper, data]

Mouse models of SMA show divergent patterns of neuronal vulnerability and resilience.

Journal: Skeletal muscle

Status: data only, 1 dataset cited

[41994] doi:10.1371/journal.pcbi.1010500 [paper, repository]

Thalamic regulation of frontal interactions in human cognitive flexibility.

Journal: PLoS computational biology

Authors' code: hummosa/MD-reservoir (MIT)

Status: code verified, 26 files readable, 8 matches

[41995] doi:10.1371/journal.pone.0274579 [paper, data]

Emphasizing speed or accuracy in an eye-tracking version of the Trail-Making-Test: Towards experimental diagnostics for decomposing executive functions.

Journal: PloS one

Status: data only, 2 datasets cited

[41996] doi:10.3389/fnbeh.2022.987697 [paper, data]

Tryptophan metabolites in depression: Modulation by gut microbiota.

Journal: Frontiers in behavioral neuroscience

Status: data only, 8 datasets cited

[41997] doi:10.3389/fnins.2022.940381 [paper, repository]

MRF-Net: A multi-branch residual fusion network for fast and accurate whole-brain MRI segmentation.

Journal: Frontiers in neuroscience

Authors' code: weichonghit/brain_seg (no license)

Status: code verified, 5 files readable, 1 match

[41998] doi:10.3389/fpsyt.2022.869627 [paper, repository]

Structural brain morphometry as classifier and predictor of ADHD and reward-related comorbidities.

Journal: Frontiers in psychiatry

Authors' code: ylzhang29/ADHD_MLP (no license), enigma.ini.usc.edu/about-2 (no license)

Status: code verified, 3 files readable

[41999] doi:10.3390/antiox11091794 [paper, data]

DHPA Protects SH-SY5Y Cells from Oxidative Stress-Induced Apoptosis via Mitochondria Apoptosis and the Keap1/Nrf2/HO-1 Signaling Pathway.

Journal: Antioxidants (Basel, Switzerland)

Status: data only, 1 dataset cited

[42000] doi:10.3390/bios12090751 [paper, data]

EEG Evaluation in a Neuropsychological Intervention Program Based on Virtual Reality in Adults with Parkinson's Disease.

Journal: Biosensors

Status: data only, 2 datasets cited

[42001] doi:10.7554/elife.75515 [paper, repository]

Neural synchronization is strongest to the spectral flux of slow music and depends on familiarity and beat salience.

Journal: eLife

Authors' code: OSF y5xhs (no license)

Status: code verified, 6 files readable, 16 matches

[42002] doi:10.7554/elife.77348 [paper, repository]

Time-resolved parameterization of aperiodic and periodic brain activity.

Journal: eLife

Authors' code: lucwilson/SPRiNT (Apache-2.0), Zenodo 6903693 (other-open)

Status: code verified, 21 files readable, 15 matches

Sunday, 11 September 2022 (2 papers)

[42003] doi:10.1002/mrm.29418 [paper, repository]

NIfTI-MRS: A standard data format for magnetic resonance spectroscopy.

Journal: Magnetic resonance in medicine

Authors' code: wtclarke/spec2nii (BSD-3-Clause), wtclarke/mrs_nifti_standard (CC-BY-4.0), Zenodo 5084789 (CC-BY-4.0), Zenodo 5085449 (CC-BY-4.0)

Status: code verified, 73 files readable, 5 matches

[42004] doi:10.3390/ijms231810531 [paper, repository]

Identification of Candidate Chemosensory Gene Families by Head Transcriptomes Analysis in the Mexican Fruit Fly, <i>Anastrepha ludens</i> Loew (Diptera: Tephritidae).

Journal: International journal of molecular sciences

Authors' code: ablab/quast (GPL-2.0)

Status: code verified, 610 files readable

Saturday, 10 September 2022 (8 papers)

[42005] doi:10.1002/btm2.10406 [paper, data]

Gene therapy using genome-edited iPS cells for targeting malignant glioma.

Journal: Bioengineering & translational medicine

Status: data only, 1 dataset cited

[42006] doi:10.1007/s00455-022-10517-2 [paper]

Neural Correlates of Oral Stereognosis-An fMRI Study.

Journal: Dysphagia

Status: code on request

[42007] doi:10.1007/s11136-022-03245-5 [paper, data]

Effectiveness of a personalized health profile on specificity of self-management goals among people living with HIV in Canada: findings from a blinded pragmatic randomized controlled trial.

Journal: Quality of life research : an international journal of quality of life aspects of treatment, care and rehabilitation

Status: data only, 1 dataset cited

[42008] doi:10.1016/j.compbiomed.2022.106055 [paper, data]

Network analysis between neuron dysfunction and neuroimmune response based on neural single-cell transcriptome of COVID-19 patients.

Journal: Computers in biology and medicine

Status: data only, 1 dataset cited

[42009] doi:10.1111/joa.13747 [paper, data]

A method to identify, dissect and stain equine neuromuscular junctions for morphological analysis.

Journal: Journal of anatomy

Status: data only, 1 dataset cited

[42010] doi:10.1186/s12864-022-08860-7 [paper, data]

Comparative analysis of two genomes of Chlamydia pecorum isolates from an Alpine chamois and a water buffalo.

Journal: BMC genomics

Status: data only, 1 dataset cited

[42011] doi:10.3390/brainsci12091225 [paper, data]

From Loss of Control to Social Exclusion: ERP Effects of Preexposure to a Social Threat in the Cyberball Paradigm.

Journal: Brain sciences

Status: data only, 1 dataset cited

[42012] doi:10.3390/cancers14184399 [paper, data]

Particle Swarm Optimization and Two-Way Fixed-Effects Analysis of Variance for Efficient Brain Tumor Segmentation.

Journal: Cancers

Status: data only, 1 dataset cited

Friday, 9 September 2022 (24 papers)

[42013] doi:10.1007/s10571-022-01276-7 [paper, data]

Human Oral Mucosa Stem Cells Increase Survival of Neurons Affected by In Vitro Anoxia and Improve Recovery of Mice Affected by Stroke Through Time-limited Secretion of miR-514A-3p.

Journal: Cellular and molecular neurobiology

Status: data only, 1 dataset cited

[42014] doi:10.1007/s12035-022-03025-9 [paper, data]

Specific Mutations in the Cholesterol-Binding Site of APP Alter Its Processing and Favor the Production of Shorter, Less Toxic Aβ Peptides.

Journal: Molecular neurobiology

Status: data only, 1 dataset cited

[42015] doi:10.1016/j.bpsgos.2022.08.011 [paper, data]

Resting-State Functional Connectivity Explained Psychotic-like Experiences in the General Population and Partially Generalized to Patients and Relatives.

Journal: Biological psychiatry global open science

Status: data only, 1 dataset cited

[42016] doi:10.1016/j.crmeth.2022.100292 [paper]

Tau^LUM, an <i>in vivo Drosophila</i> sensor of tau multimerization, identifies neuroprotective interventions in tauopathy.

Journal: Cell reports methods

Status: code on request

[42017] doi:10.1016/j.csbj.2022.09.003 [paper]

Association of glioma CD44 expression with glial dynamics in the tumour microenvironment and patient prognosis.

Journal: Computational and structural biotechnology journal

Status: code on request

[42018] doi:10.1016/j.ohx.2022.e00357 [paper, repository]

A simplified design of a cEEGrid ear-electrode adapter for the OpenBCI biosensing platform.

Journal: HardwareX

Authors' code: OSF ancfr (no license)

Status: code verified, 3 files readable, 7 matches

[42019] doi:10.1038/s41388-022-02457-w [paper, data]

Tumor-derived exosomes deliver the tumor suppressor miR-3591-3p to induce M2 macrophage polarization and promote glioma progression.

Journal: Oncogene

Status: data only, 1 dataset cited

[42020] doi:10.1038/s41746-022-00674-x [paper]

Detecting motor symptom fluctuations in Parkinson's disease with generative adversarial networks.

Journal: NPJ digital medicine

Status: code on request

[42021] doi:10.1038/s42003-022-03917-5 [paper, data]

A RUNX-targeted gene switch-off approach modulates the BIRC5/PIF1-p21 pathway and reduces glioblastoma growth in mice.

Journal: Communications biology

Status: data only, 1 dataset cited

[42022] doi:10.1126/sciadv.abo5739 [paper, data]

Fast acquisition of propagating waves in humans with low-field MRI: Toward accessible MR elastography.

Journal: Science advances

Status: data only, 1 dataset cited

[42023] doi:10.1186/s12916-022-02490-2 [paper, repository]

Associations between grip strength, brain structure, and mental health in > 40,000 participants from the UK Biobank.

Journal: BMC medicine

Authors' code: Jiang-brain/Grip-strength-association (no license)

Status: code verified, 5 files readable, 3 matches

[42024] doi:10.1371/journal.pone.0274099 [paper, data]

Body image and self-perception in women with navel piercings.

Journal: PloS one

Status: data only, 1 dataset cited

[42025] doi:10.3389/fimmu.2022.986346 [paper, data]

Integrating peripheral blood and brain transcriptomics to identify immunological features associated with Alzheimer's disease in mild cognitive impairment patients.

Journal: Frontiers in immunology

Status: data only, 1 dataset cited

[42026] doi:10.3389/fnana.2022.897237 [paper, repository]

The cortical spectrum: A robust structural continuum in primate cerebral cortex revealed by histological staining and magnetic resonance imaging.

Journal: Frontiers in neuroanatomy

Authors' code: bu.edu/neural/downloads1 (no license)

Status: code verified

[42027] doi:10.3389/fncel.2022.868291 [paper]

<i>CAMTA1</i> gene affects the ischemia-reperfusion injury by regulating <i>CCND1</i>.

Journal: Frontiers in cellular neuroscience

Status: data only

[42028] doi:10.3389/fncom.2022.954847 [paper, repository]

A neuro-inspired computational model of life-long learning and catastrophic interference, mimicking hippocampus novelty-based dopamine modulation and lateral inhibitory plasticity.

Journal: Frontiers in computational neuroscience

Authors' code: pafferni/A-neuro-inspired-computational-model-of-life-long-learning-and-catastrophic-interference (GPL-3.0)

Status: code verified, 2 files readable

[42029] doi:10.3389/fnetp.2022.937130 [paper, data]

Long- and short-term fluctuations compared for several organ systems across sleep stages.

Journal: Frontiers in network physiology

Status: data only, 1 dataset cited

[42030] doi:10.3389/fnins.2022.936897 [paper, data]

Membrane interaction to intercellular spread of pathology in Alzheimer's disease.

Journal: Frontiers in neuroscience

Status: data only, 1 dataset cited

[42031] doi:10.3390/brainsci12091218 [paper, data]

Devices and Technology in Transcranial Magnetic Stimulation: A Systematic Review.

Journal: Brain sciences

Status: data only, 2 datasets cited

[42032] doi:10.3390/brainsci12091219 [paper, repository]

Assessing Multi-Site rs-fMRI-Based Connectomic Harmonization Using Information Theory.

Journal: Brain sciences

Authors' code: ramp-kits/autism (no license)

Status: code verified, 24 files readable, 3 matches

[42033] doi:10.3390/ijerph191811326 [paper, data]

Epilepsy Seizures Prediction Based on Nonlinear Features of EEG Signal and Gradient Boosting Decision Tree.

Journal: International journal of environmental research and public health

Status: data only, 1 dataset cited

[42034] doi:10.3390/ijms231810432 [paper, repository]

p27^kip1 Modulates the Morphology and Phagocytic Activity of Microglia.

Journal: International journal of molecular sciences

Authors' code: AttwellLab/Microglia (MIT)

Status: code verified, 8 files readable, 1 match

[42035] doi:10.3390/s22186817 [paper, data]

Characterization of Retronasal Airflow Patterns during Intraoral Fluid Discrimination Using a Low-Cost, Open-Source Biosensing Platform.

Journal: Sensors (Basel, Switzerland)

Status: data only, 1 dataset cited

[42036] doi:10.3390/toxics10090531 [paper, data]

Deciphering the Global Proteomic Profile Involved in Methylmercury-Induced Cerebellar Neurodegeneration and Motor Dysfunction in Adult Rats.

Journal: Toxics

Status: data only, 1 dataset cited

Thursday, 8 September 2022 (21 papers)

[42037] doi:10.1016/j.bpsgos.2022.08.010 [paper, data]

Low Dopamine D2 Receptor Expression Drives Gene Networks Related to GABA, cAMP, Growth and Neuroinflammation in Striatal Indirect Pathway Neurons.

Journal: Biological psychiatry global open science

Status: data only, 1 dataset cited

[42038] doi:10.1016/j.isci.2022.105094 [paper]

Large-scale dysfunctional white matter and grey matter networks in patients with social anxiety disorder.

Journal: iScience

Status: code on request

[42039] doi:10.1038/s41398-022-02141-3 [paper]

Evidence of genetic overlap and causal relationships between blood-based biochemical traits and human cortical anatomy.

Journal: Translational psychiatry

Status: code on request

[42040] doi:10.1038/s41746-022-00632-7 [paper, repository]

Data-driven causal model discovery and personalized prediction in Alzheimer's disease.

Journal: NPJ digital medicine

Authors' code: salib.readthedocs.io (no license), pymc.io/welcome.html (no license), jjhartmann/Levenberg-Marquardt-Algorithm (MIT), jjhartmann/Levenberg-Marquardt (no license)

Status: code verified, 5 files readable

[42041] doi:10.1038/s42003-022-03903-x [paper, repository]

Changes in dynamic transitions between integrated and segregated states underlie visual hallucinations in Parkinson's disease.

Journal: Communications biology

Authors' code: AngelikaZa/TVFC (MIT)

Status: code verified, 9 files readable, 6 matches

[42042] doi:10.1073/pnas.2207433119 [paper, data]

ISL1 is necessary for auditory neuron development and contributes toward tonotopic organization.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 4 datasets cited

[42043] doi:10.1155/2022/1992596 [paper, data]

SchizoGoogLeNet: The GoogLeNet-Based Deep Feature Extraction Design for Automatic Detection of Schizophrenia.

Journal: Computational intelligence and neuroscience

Status: data only, 1 dataset cited

[42044] doi:10.1155/2022/2781906 [paper, data]

Effect of Noni on Memory Impairment Induced by Hydrocortisone in Mice.

Journal: Evidence-based complementary and alternative medicine : eCAM

Status: data only, 1 dataset cited

[42045] doi:10.1186/s12967-022-03612-3 [paper, data]

Small and long RNA transcriptome of whole human cerebrospinal fluid and serum as compared to their extracellular vesicle fractions reveal profound differences in expression patterns and impacts on biological processes.

Journal: Journal of translational medicine

Status: data only, 4 datasets cited

[42046] doi:10.1186/s40478-022-01424-6 [paper, data]

Mitochondrial dysfunction is a key pathological driver of early stage Parkinson's.

Journal: Acta neuropathologica communications

Status: data only, 8 datasets cited

[42047] doi:10.1371/journal.pcbi.1010086 [paper, repository]

Connectivity concepts in neuronal network modeling.

Journal: PLoS computational biology

Authors' code: Zenodo 5550351 (no license), osb:potjansdiesmann2014 (no license)

Status: code verified, 9 files readable, 4 matches

[42048] doi:10.1371/journal.pcbi.1010461 [paper, repository]

Constructing functional models from biophysically-detailed neurons.

Journal: PLoS computational biology

Authors' code: psipeter/functional-detailed-neurons (no license)

Status: code verified, 28 files readable, 11 matches

[42049] doi:10.1523/eneuro.0200-22.2022 [paper, repository]

Hierarchical Individual Naturalistic Functional Brain Networks with Group Consistency Uncovered by a Two-Stage NAS-Volumetric Sparse DBN Framework.

Journal: eNeuro

Authors' code: nitishsrivastava/deepnet (BSD-3-Clause)

Status: code verified, 79 files readable

[42050] doi:10.3389/fcell.2022.980775 [paper, repository]

Direct modulation of microglial function by electrical field.

Journal: Frontiers in cell and developmental biology

Authors' code: trinityrnaseq/trinityrnaseq (BSD-3-Clause)

Status: code verified, 482 files readable, 1 match

[42051] doi:10.3389/fnagi.2022.984708 [paper, data]

Effects of rTMS treatment on global cognitive function in Alzheimer's disease: A systematic review and meta-analysis.

Journal: Frontiers in aging neuroscience

Status: data only, 1 dataset cited

[42052] doi:10.3389/fnmol.2022.1007352 [paper, repository]

Identification of uveitis-associated functions based on the feature selection analysis of gene ontology and Kyoto Encyclopedia of Genes and Genomes pathway enrichment scores.

Journal: Frontiers in molecular neuroscience

Authors' code: scikit-learn-contrib/boruta_py (BSD-3-Clause)

Status: code verified, 8 files readable, 2 matches

[42053] doi:10.3389/fnut.2022.907526 [paper, data]

Myristic acid alleviates hippocampal aging correlated with GABAergic signaling.

Journal: Frontiers in nutrition

Status: data only, 1 dataset cited

[42054] doi:10.3390/cancers14184371 [paper, data]

Mitochondrial Protein Cox7b Is a Metabolic Sensor Driving Brain-Specific Metastasis of Human Breast Cancer Cells.

Journal: Cancers

Status: data only, 1 dataset cited

[42055] doi:10.3390/vaccines10091500 [paper, data]

In Silico Discovery of GPCRs and GnRHRs as Novel Binding Receptors of SARS-CoV-2 Spike Protein Could Explain Neuroendocrine Disorders in COVID-19.

Journal: Vaccines

Status: data only, 1 dataset cited

[42056] doi:10.7554/elife.65661 [paper, repository]

Evidence accumulation, not 'self-control', explains dorsolateral prefrontal activation during normative choice.

Journal: eLife

Authors' code: OSF eqvwd (no license)

Status: code verified

[42057] doi:10.7554/elife.76544 [paper, data]

Low and high frequency intracranial neural signals match in the human associative cortex.

Journal: eLife

Status: data only, 1 dataset cited

Wednesday, 7 September 2022 (34 papers)

[42058] doi:10.1002/hbm.26060 [paper, repository]

The early adolescent brain on music: Analysis of functional dynamics reveals engagement of orbitofrontal cortex reward system.

Journal: Human brain mapping

Authors' code: juanitacabral/leida (no license)

Status: code verified, 45 files readable, 8 matches

[42059] doi:10.1002/jmv.28107 [paper, data]

Causal effect of COVID-19 on Alzheimer's disease: A Mendelian randomization study.

Journal: Journal of medical virology

Status: data only, 2 datasets cited

[42060] doi:10.1007/s00221-022-06456-x [paper, repository]

Benefits of active listening during 3D sound localization.

Journal: Experimental brain research

Authors' code: OSF 8fapq (no license)

Status: code found, still to be checked

[42061] doi:10.1007/s11548-022-02736-7 [paper, repository]

Karawun: a software package for assisting evaluation of advances in multimodal imaging for neurosurgical planning and intraoperative neuronavigation.

Journal: International journal of computer assisted radiology and surgery

Authors' code: DevelopmentalImagingMCRI/karawun (Apache-2.0)

Status: code verified, 11 files readable, 1 match

[42062] doi:10.1016/j.cub.2022.08.038 [paper, data]

Reprogramming the topology of the nociceptive circuit in C. elegans reshapes sexual behavior.

Journal: Current biology : CB

Status: data only, 1 dataset cited

[42063] doi:10.1038/s41467-022-33020-6 [paper, repository]

Ca²⁺-modulated photoactivatable imaging reveals neuron-astrocyte glutamatergic circuitries within the nucleus accumbens.

Journal: Nature communications

Authors' code: JulioEI/PRQ (GPL-3.0)

Status: code verified, 10 files readable, 1 match

[42064] doi:10.1038/s41586-022-05161-7 [paper, repository]

Brainstem ADCYAP1⁺ neurons control multiple aspects of sickness behaviour.

Journal: Nature

Authors' code: lazappi/clustree (GPL-3.0)

Status: code verified, 19 files readable, 1 match

[42065] doi:10.1038/s41586-022-05266-z [paper]

Gut-brain circuits for fat preference.

Journal: Nature

Status: code on request

[42066] doi:10.1038/s41598-022-19324-z [paper, repository]

Synaptic inputs to displaced intrinsically-photosensitive ganglion cells in macaque retina.

Journal: Scientific reports

Authors' code: neitzlab/sbfsem-tools (MIT)

Status: code verified, 643 files readable, 2 matches

[42067] doi:10.1038/s41598-022-19542-5 [paper, data]

Chronic back pain sub-grouped via psychosocial, brain and physical factors using machine learning.

Journal: Scientific reports

Status: data only, 1 dataset cited

[42068] doi:10.1073/pnas.2201645119 [paper, data]

Monocytes maintain central nervous system homeostasis following helminth-induced inflammation.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 1 dataset cited

[42069] doi:10.1098/rsos.220652 [paper, repository]

Winter conditions, not resource availability alone, may drive reversible seasonal skull size changes in moles.

Journal: Royal Society open science

Authors' code: doi:10.6084/m9.figshare.c.6167807 (no license)

Status: code found, still to be checked

[42070] doi:10.1098/rsos.220962 [paper, data]

Rapid brain development and reduced neuromodulator titres correlate with host shifts in <i>Rhagoletis pomonella</i>.

Journal: Royal Society open science

Status: data only, 2 datasets cited

[42071] doi:10.1126/sciadv.abg3203 [paper, repository]

A neurogenetic mechanism of experience-dependent suppression of aggression.

Journal: Science advances

Authors' code: Zenodo 6672695 (other-open), hsupoleng/ishii_etal_2020_behavioral_feature_analysis (MIT)

Status: code verified, 38 files readable, 8 matches

[42072] doi:10.1126/sciadv.abn9516 [paper, repository]

Uncovering a tripartite landmark in posterior cingulate cortex.

Journal: Science advances

Authors' code: ilwoolyu/SphericalLabeling (MIT), Zenodo 5644409 (CC-BY-4.0), cnl- (no license)

Status: code verified, 32 files readable, 13 matches

[42073] doi:10.1128/mbio.02221-22 [paper, repository]

Treatment of Sindbis Virus-Infected Neurons with Antibody to E2 Alters Synthesis of Complete and nsP1-Expressing Defective Viral RNAs.

Journal: mBio

Authors' code: mbartl13/mbartl13 (no license)

Status: empty repository, 1 file readable

[42074] doi:10.1152/jn.00224.2022 [paper, repository]

A neurodynamic model of inter-brain coupling in the gamma band.

Journal: Journal of neurophysiology

Authors' code: ppsp-team/Hyper-Model (BSD-3-Clause), Zenodo 7047107 (CC-BY-4.0)

Status: code verified, 16 files readable, 1 match

[42075] doi:10.1186/s12883-022-02863-3 [paper, data]

Brain regions involved in fractional amplitude of low-frequency fluctuation in cluster headache patients: a resting-state functional MRI study.

Journal: BMC neurology

Status: data only, 1 dataset cited

[42076] doi:10.1186/s12974-022-02579-8 [paper, data]

COVID-19 and cognitive impairment: neuroinvasive and blood‒brain barrier dysfunction.

Journal: Journal of neuroinflammation

Status: data only, 1 dataset cited

[42077] doi:10.1371/journal.pcbi.1010430 [paper, repository]

Identifying enhancer properties associated with genetic risk for complex traits using regulome-wide association studies.

Journal: PLoS computational biology

Authors' code: casalex/RWAS (MIT)

Status: empty repository, 2 files readable

[42078] doi:10.1371/journal.pgen.1010388 [paper, data]

Localized variation in ancestral admixture identifies pilocytic astrocytoma risk loci among Latino children.

Journal: PLoS genetics

Status: data only, 1 dataset cited

[42079] doi:10.1371/journal.pone.0273304 [paper, data]

Effects of aging on neural processing during an active listening task.

Journal: PloS one

Status: data only, 1 dataset cited

[42080] doi:10.1523/eneuro.0389-21.2022 [paper, repository]

Recurring Cholinergic Inputs Induce Local Hippocampal Plasticity through Feedforward Disinhibition.

Journal: eNeuro

Authors' code: inesCompleto/Hippocampal_Plasticity (no license)

Status: code verified, 19 files readable, 7 matches

[42081] doi:10.3389/fbioe.2022.962959 [paper, repository]

EMG-driven musculoskeletal model calibration with estimation of unmeasured muscle excitations <i>via</i> synergy extrapolation.

Journal: Frontiers in bioengineering and biotechnology

Authors' code: simtk.org/projects/synx (no license)

Status: code verified

[42082] doi:10.3389/fcell.2022.935360 [paper, repository]

Altered resting-state functional connectivity in hiPSCs-derived neuronal networks from schizophrenia patients.

Journal: Frontiers in cell and developmental biology

Authors' code: sofiapuvogelvittini/neuronal_functional_connectivity (no license)

Status: code verified, 4 files readable, 4 matches

[42083] doi:10.3389/fncom.2022.964634 [paper, data]

Sensory-thresholded switch of neural firing states in a computational model of the ventromedial hypothalamus.

Journal: Frontiers in computational neuroscience

Status: data only, 1 dataset cited

[42084] doi:10.3389/fnins.2022.926256 [paper, repository]

Design and implementation of an EEG-based recognition mechanism for the openness trait of the Big Five.

Journal: Frontiers in neuroscience

Authors' code: moses-palmer/pynput (LGPL-3.0)

Status: code verified, 36 files readable, 1 match

[42085] doi:10.3389/fnins.2022.981523 [paper, repository]

Image registration and appearance adaptation in non-correspondent image regions for new MS lesions detection.

Journal: Frontiers in neuroscience

Authors' code: juliaandresen/ANCRNet (no license)

Status: code verified, 7 files readable, 8 matches

[42086] doi:10.3389/fpsyg.2022.932952 [paper, repository]

Automatic morpheme identification across development: Magnetoencephalography (MEG) evidence from fast periodic visual stimulation.

Journal: Frontiers in psychology

Authors' code: OSF ns93h (no license)

Status: code verified, 3 files readable

[42087] doi:10.3390/biom12091259 [paper]

Public Transcriptomic Data Meta-Analysis Demonstrates TAAR6 Expression in the Mental Disorder-Related Brain Areas in Human and Mouse Brain.

Journal: Biomolecules

Status: data only

[42088] doi:10.3390/ijms231810287 [paper, data]

Genetic Mechanism Study of Auditory Phoenix Spheres and Transcription Factors Prediction for Direct Reprogramming by Bioinformatics.

Journal: International journal of molecular sciences

Status: data only, 1 dataset cited

[42089] doi:10.3390/mi13091485 [paper, data]

Deep Convolutional Neural Network for EEG-Based Motor Decoding.

Journal: Micromachines

Status: data only, 2 datasets cited

[42090] doi:10.3892/mmr.2022.12844 [paper, data]

Tanshinone IIA regulates expression of glucose transporter 1 via activation of the HIF‑1α signaling pathway.

Journal: Molecular medicine reports

Status: data only, 1 dataset cited

[42091] doi:10.7554/elife.79370 [paper, repository]

Impact of blindness onset on the representation of sound categories in occipital and temporal cortices.

Journal: eLife

Authors' code: OSF feqa6 (no license)

Status: code verified, 10 files readable

Tuesday, 6 September 2022 (27 papers, 21 on this page)

[42092] doi:10.1002/hbm.26069 [paper, repository]

The role of the parahippocampal cortex in landmark-based distance estimation based on the contextual hypothesis.

Journal: Human brain mapping

Authors' code: arielletambini/denoiser (Apache-2.0), gitee.com/qunjunliang/pick-up-same-analysis-scripts (other)

Status: code verified, 17 files readable, 7 matches

[42093] doi:10.1007/s00401-022-02454-z [paper, repository]

Genome-wide meta-analysis for Alzheimer's disease cerebrospinal fluid biomarkers.

Journal: Acta neuropathologica

Authors' code: bulik/ldsc (GPL-3.0), lchiffon/wordcloud2 (no license)

Status: code verified, 39 files readable

[42094] doi:10.1016/j.jneumeth.2022.109703 [paper, data]

Latency correction in sparse neuronal spike trains.

Journal: Journal of neuroscience methods

Status: data only, 1 dataset cited

[42095] doi:10.1038/s41398-022-02134-2 [paper]

Transdiagnostic connectome signatures from resting-state fMRI predict individual-level intellectual capacity.

Journal: Translational psychiatry

Status: code on request

[42096] doi:10.1038/s41421-022-00442-x [paper, repository]

Artificial intelligence defines protein-based classification of thyroid nodules.

Journal: Cell discovery

Authors' code: zangzelin/thyroid-project (no license)

Status: code verified, 8 files readable, 2 matches

[42097] doi:10.1038/s41540-022-00243-8 [paper, repository]

Tissue-wide cell-specific proteogenomic modeling reveals novel candidate risk genes in autism spectrum disorders.

Journal: NPJ systems biology and applications

Authors' code: adoostparast/MAPSD (no license)

Status: code verified, 1 file readable

[42098] doi:10.1038/s41597-022-01615-9 [paper, repository]

ASL-BIDS, the brain imaging data structure extension for arterial spin labeling.

Journal: Scientific data

Authors' code: ExploreASL/ExploreASL (no license), gold-standard-phantoms/asldro (MIT)

Status: code verified, 2,077 files readable, 8 matches

[42099] doi:10.1038/s42003-022-03864-1 [paper, repository]

Cognitive science theory-driven pharmacology elucidates the neurobiological basis of perception-motor integration.

Journal: Communications biology

Authors' code: OSF vepb6 (no license)

Status: code verified, 4 files readable, 5 matches

[42100] doi:10.1038/s42003-022-03880-1 [paper, data]

Choice of Voxel-based Morphometry processing pipeline drives variability in the location of neuroanatomical brain markers.

Journal: Communications biology

Status: data only, 1 dataset cited

[42101] doi:10.1073/pnas.2115610119 [paper, repository]

Geometry of neural computation unifies working memory and planning.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: murraylab/conditionalDelayedLogicTask (no license)

Status: code verified, 2 files readable

[42102] doi:10.1073/pnas.2118163119 [paper, repository]

Physiological noise facilitates multiplexed coding of vibrotactile-like signals in somatosensory cortex.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: modeldb:267510 (no license)

Status: code found, still to be checked

[42103] doi:10.1073/pnas.2208465119 [paper, repository]

Tagged actin mRNA dysregulation in IGF2BP1[Formula: see text] mice.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: leti332/dendritic-mRNA-analysis (no license)

Status: code verified, 8 files readable

[42104] doi:10.1186/s12987-022-00361-9 [paper, repository]

Lysophosphatidic acid as a CSF lipid in posthemorrhagic hydrocephalus that drives CSF accumulation via TRPV4-induced hyperactivation of NKCC1.

Journal: Fluids and barriers of the CNS

Authors' code: Sorennorge/MacAulayLab-RNAseq1 (no license)

Status: code verified, 15 files readable, 2 matches

[42105] doi:10.1186/s13578-022-00869-5 [paper, repository]

Intermittent hypoxia in a mouse model of apnea of prematurity leads to a retardation of cerebellar development and long-term functional deficits.

Journal: Cell & bioscience

Authors' code: ma-riviere/LT-AoP-22 (CC-BY-4.0), Zenodo 6480947 (CC-BY-4.0)

Status: code verified, 62 files readable, 5 matches

[42106] doi:10.1371/journal.pbio.3001563 [paper, repository]

Pax6 limits the competence of developing cerebral cortical cells to respond to inductive intercellular signals.

Journal: PLoS biology

Authors' code: satijalab/seurat (other), theislab/scvelo (BSD-3-Clause), TiagoMarcos (no license)

Status: code verified, 219 files readable, 2 matches

[42107] doi:10.1371/journal.pbio.3001711 [paper, repository]

Attractive serial dependence overcomes repulsive neuronal adaptation.

Journal: PLoS biology

Authors' code: OSF e5xw8 (no license)

Status: code verified, 23 files readable, 4 matches

[42108] doi:10.1371/journal.pbio.3001785 [paper, repository]

Anterior cingulate cortex causally supports flexible learning under motivationally challenging and cognitively demanding conditions.

Journal: PLoS biology

Authors' code: banaiek/TUS_PlosBiology_2022 (no license)

Status: code verified, 5 files readable

[42109] doi:10.1371/journal.pcbi.1010412 [paper, data]

What lies underneath: Precise classification of brain states using time-dependent topological structure of dynamics.

Journal: PLoS computational biology

Status: data only, 1 dataset cited

[42110] doi:10.1371/journal.pcbi.1010427 [paper, repository]

MouseNet: A biologically constrained convolutional neural network model for the mouse visual cortex.

Journal: PLoS computational biology

Authors' code: mabuice/mouse_cnn (no license)

Status: code verified, 27 files readable, 14 matches

[42111] doi:10.1371/journal.pone.0274212 [paper, repository]

A joint ventricle and WMH segmentation from MRI for evaluation of healthy and pathological changes in the aging brain.

Journal: PloS one

Authors' code: lmellingsen/Ventricle_WMH_segmentation (no license)

Status: code verified, 3 files readable, 1 match

[42112] doi:10.1371/journal.ppat.1010637 [paper, data]

Microglial STAT1-sufficiency is required for resistance to toxoplasmic encephalitis.

Journal: PLoS pathogens

Status: data only, 2 datasets cited

Also: by category, author, journal, institution, tool or dataset; the search; the DOI lookup for any paper read, with or without a page.