Every paper, by date: page 189

44,644 papers with a page: 24,189 with their authors' code, 4,955 with code on request, 15,495 with data only. The most recent first, 224 a page. Page 189 of 200: 6 September 2022 to 29 August 2022.

Tuesday, 6 September 2022 (27 papers, 6 on this page)

[42113] doi:10.1523/eneuro.0287-21.2022 [paper, repository]

Dynamics and Potential Significance of Spontaneous Activity in the Habenula.

Journal: eNeuro

Authors' code: suryadi-t/reverberating_habenula (MIT)

Status: code verified, 4 files readable

[42114] doi:10.3389/fmicb.2022.958385 [paper, data]

Transcriptome sequencing analysis of echovirus 30 infection reveals its potential pathogenesis.

Journal: Frontiers in microbiology

Status: data only, 3 datasets cited

[42115] doi:10.3389/fnagi.2022.980998 [paper, data]

The therapeutic efficacy of transcranial magnetic stimulation in managing Alzheimer's disease: A systemic review and meta-analysis.

Journal: Frontiers in aging neuroscience

Status: data only, 1 dataset cited

[42116] doi:10.3389/fnagi.2022.996223 [paper, data]

Young plasma reverses anesthesia and surgery-induced cognitive impairment in aged rats by modulating hippocampal synaptic plasticity.

Journal: Frontiers in aging neuroscience

Status: data only, 1 dataset cited

[42117] doi:10.3390/jcm11185263 [paper, repository]

Randomized Double-Blind Crossover Study for Evaluating a Probiotic Mixture on Gastrointestinal and Behavioral Symptoms of Autistic Children.

Journal: Journal of clinical medicine

Authors' code: vmikk/metagMisc (MIT), mcalgaro93/HotLoadings (no license)

Status: code verified, 144 files readable, 6 matches

[42118] doi:10.7554/elife.79378 [paper, repository]

Machine learning-assisted fluoroscopy of bladder function in awake mice.

Journal: eLife

Authors' code: doi:10.6084/m9.figshare.c.6004234 (no license)

Status: code found, still to be checked

Monday, 5 September 2022 (27 papers)

[42119] doi:10.1007/s00422-022-00941-w [paper, repository]

Beyond Wilson-Cowan dynamics: oscillations and chaos without inhibition.

Journal: Biological cybernetics

Authors' code: Zenodo 6388077 (other-open), vincentpainchaud/popnet (MIT)

Status: code verified, 24 files readable, 12 matches

[42120] doi:10.1016/j.isci.2022.105071 [paper, data]

Automated and parallelized spike collision tests to identify spike signal projections.

Journal: iScience

Status: code on request, 1 dataset cited

[42121] doi:10.1016/j.isci.2022.105079 [paper, data]

Epidemiologic information discovery from open-access COVID-19 case reports via pretrained language model.

Journal: iScience

Status: code on request, 3 datasets cited

[42122] doi:10.1016/j.jare.2022.08.013 [paper, data]

An odorant binding protein is involved in counteracting detection-avoidance and Toll-pathway innate immunity.

Journal: Journal of advanced research

Status: data only, 8 datasets cited

[42123] doi:10.1016/j.jbc.2022.102452 [paper, repository]

Expression of myelin transcription factor 1 and lamin B receptor mediate neural progenitor fate transition in the zebrafish spinal cord pMN domain.

Journal: The Journal of biological chemistry

Authors' code: lingf85/scRNA-zebrafish (no license)

Status: code verified, 7 files readable, 3 matches

[42124] doi:10.1016/j.neuroimage.2022.119612 [paper, repository]

Micapipe: A pipeline for multimodal neuroimaging and connectome analysis.

Journal: NeuroImage

Authors' code: MICA-MNI/micapipe (GPL-3.0), micapipe.readthedocs.io (no license), MICA-MNI/micapipe-supplementary (BSD-3-Clause)

Status: code verified, 29 files readable, 11 matches

[42125] doi:10.1038/s41380-022-01720-6 [paper, repository]

How nature nurtures: Amygdala activity decreases as the result of a one-hour walk in nature.

Journal: Molecular psychiatry

Authors' code: OSF 5m2qv (no license)

Status: code verified, 8 files readable, 2 matches

[42126] doi:10.1038/s41398-022-02128-0 [paper, repository]

Layer III pyramidal cells in the prefrontal cortex reveal morphological changes in subjects with depression, schizophrenia, and suicide.

Journal: Translational psychiatry

Authors' code: Nick7900/AutoCUTS-LM-Analysis (no license)

Status: code verified, 12 files readable

[42127] doi:10.1038/s41419-022-05212-x [paper, data]

ZMYND8 suppresses MAPT213 LncRNA transcription to promote neuronal differentiation.

Journal: Cell death & disease

Status: data only, 1 dataset cited

[42128] doi:10.1038/s41467-022-32775-2 [paper, repository]

High-density electrode recordings reveal strong and specific connections between retinal ganglion cells and midbrain neurons.

Journal: Nature communications

Authors' code: KremkowLab/Axon-on-Neuropixels-in-Kilosort (no license)

Status: code verified, 2 files readable

[42129] doi:10.1038/s41467-022-32790-3 [paper]

In-sensor image memorization and encoding via optical neurons for bio-stimulus domain reduction toward visual cognitive processing.

Journal: Nature communications

Status: code on request

[42130] doi:10.1038/s41467-022-32840-w [paper, repository]

The human thalamus orchestrates neocortical oscillations during NREM sleep.

Journal: Nature communications

Authors' code: netstim/leaddbs (GPL-3.0), circstat/circstat-matlab (no license)

Status: code verified, 2,040 files readable, 2 matches

[42131] doi:10.1038/s41467-022-32898-6 [paper, data]

MTG8 interacts with LHX6 to specify cortical interneuron subtype identity.

Journal: Nature communications

Status: data only, 1 dataset cited

[42132] doi:10.1038/s41536-022-00243-6 [paper, data]

Cerebellar glutamatergic system impacts spontaneous motor recovery by regulating Gria1 expression.

Journal: NPJ Regenerative medicine

Status: code on request, 1 dataset cited

[42133] doi:10.1038/s41598-022-19158-9 [paper, repository]

Task prioritization modulates alpha, theta and beta EEG dynamics reflecting proactive cognitive control.

Journal: Scientific reports

Authors' code: OSF uyhs7 (no license)

Status: code verified, 14 files readable, 8 matches

[42134] doi:10.1038/s41598-022-19355-6 [paper, data]

An almost nontoxic tetrodotoxin analog, 5,6,11-trideoxytetrodotoxin, as an odorant for the grass puffer.

Journal: Scientific reports

Status: data only, 1 dataset cited

[42135] doi:10.1038/s42003-022-03861-4 [paper, repository]

Distinct interacting cortical networks for stimulus-response and repetition-suppression.

Journal: Communications biology

Authors' code: repetitionsuppression/-ECOGRepetitionSuppression (no license)

Status: code verified, 16 files readable

[42136] doi:10.1038/s42003-022-03878-9 [paper, data]

CPEB2 m6A methylation regulates blood-tumor barrier permeability by regulating splicing factor SRSF5 stability.

Journal: Communications biology

Status: data only, 1 dataset cited

[42137] doi:10.1098/rstb.2021.0279 [paper, repository]

Molecular advances to study the function, evolution and spectral tuning of arthropod visual opsins.

Journal: Philosophical transactions of the Royal Society of London. Series B, Biological sciences

Authors' code: doi:10.6084/m9.figshare.c.6098624 (no license)

Status: code found, still to be checked

[42138] doi:10.1098/rstb.2021.0283 [paper, repository]

A model for colour preference behaviour of spring migrant aphids.

Journal: Philosophical transactions of the Royal Society of London. Series B, Biological sciences

Authors' code: doi:10.6084/m9.figshare.c.6098636 (no license)

Status: code found, still to be checked

[42139] doi:10.1111/jnc.15689 [paper, data]

Microglia-dependent remodeling of neuronal circuits.

Journal: Journal of neurochemistry

Status: data only, 12 datasets cited

[42140] doi:10.3389/fmolb.2022.933788 [paper, repository]

A non-synonymous single nucleotide polymorphism in <i>SIRT6</i> predicts neurological severity in Friedreich ataxia.

Journal: Frontiers in molecular biosciences

Authors' code: Zenodo 6327553 (other-open), Zenodo 4711243 (other-open), nf-core/chipseq (MIT), nf-core/rnaseq (MIT)

Status: code verified, 50 files readable

[42141] doi:10.3389/fnmol.2022.970357 [paper]

<i>Tsc2</i> shapes olfactory bulb granule cell molecular and morphological characteristics.

Journal: Frontiers in molecular neuroscience

Status: data only

[42142] doi:10.3390/brainsci12091196 [paper, data]

Biomarker Genes Discovery of Alzheimer's Disease by Multi-Omics-Based Gene Regulatory Network Construction of Microglia.

Journal: Brain sciences

Status: data only, 1 dataset cited

[42143] doi:10.3390/ijms231710181 [paper, data]

Imidacloprid Impairs Glutamatergic Synaptic Plasticity and Desensitizes Mechanosensitive, Nociceptive, and Photogenic Response of <i>Drosophila melanogaster</i> by Mediating Oxidative Stress, Which Could Be Rescued by Osthole.

Journal: International journal of molecular sciences

Status: data only, 1 dataset cited

[42144] doi:10.7554/elife.77772 [paper, repository]

Deep learning-based feature extraction for prediction and interpretation of sharp-wave ripples in the rodent hippocampus.

Journal: eLife

Authors' code: pridalab/cnn-ripple (GPL-3.0), pridalab/cnn-matlab (no license), pridalab/cnn-ripple-executable-figure (no license), image-net.org (no license)

Status: code verified, 22 files readable, 5 matches

[42145] doi:10.7554/elife.78813 [paper, repository]

Molecular characteristics and laminar distribution of prefrontal neurons projecting to the mesolimbic system.

Journal: eLife

Authors' code: baabek/Axon-density-analyzer-ImageJ-script (no license)

Status: code verified, 1 file readable

Sunday, 4 September 2022 (2 papers)

[42146] doi:10.3390/s22176689 [paper, repository]

Electrodeless Heart and Respiratory Rate Estimation during Sleep Using a Single Fabric Band and Event-Based Edge Processing.

Journal: Sensors (Basel, Switzerland)

Authors' code: titusnkumara/eventbasedHRandRR (GPL-3.0)

Status: code verified, 69 files readable, 2 matches

[42147] doi:10.3390/s22176698 [paper, repository]

Remove Artifacts from a Single-Channel EEG Based on VMD and SOBI.

Journal: Sensors (Basel, Switzerland)

Authors' code: LCR997/V-sobi (no license)

Status: code verified, 3 files readable, 2 matches

Saturday, 3 September 2022 (8 papers)

[42148] doi:10.1016/j.dib.2022.108568 [paper, data]

Risk factors for comorbid epilepsy in patients with psychogenic non-epileptic seizures. Dataset of a large cohort study.

Journal: Data in brief

Status: data only, 3 datasets cited

[42149] doi:10.1016/j.neuroimage.2022.119609 [paper, repository]

Curation of BIDS (CuBIDS): A workflow and software package for streamlining reproducible curation of large BIDS datasets.

Journal: NeuroImage

Authors' code: PennLINC/CuBIDS (MIT), cubids.readthedocs.io (no license), pypi.org/project/cubids (no license)

Status: code verified, 31 files readable, 11 matches

[42150] doi:10.1016/j.neuroimage.2022.119610 [paper, data]

Predicting brain activation maps for arbitrary tasks with cognitive encoding models.

Journal: NeuroImage

Status: data only, 1 dataset cited

[42151] doi:10.1038/s41467-022-32608-2 [paper, repository]

Cell type-specific calcium imaging of central sensitization in mouse dorsal horn.

Journal: Nature communications

Authors' code: cawarwick (no license)

Status: code verified

[42152] doi:10.1038/s41539-022-00134-x [paper]

A rodent obstacle course procedure controls delivery of enrichment and enhances complex cognitive functions.

Journal: NPJ science of learning

Status: code on request

[42153] doi:10.1186/s12943-022-01643-4 [paper, data]

Structural disruption of BAF chromatin remodeller impairs neuroblastoma metastasis by reverting an invasiveness epigenomic program.

Journal: Molecular cancer

Status: data only, 2 datasets cited

[42154] doi:10.1186/s40478-022-01432-6 [paper, data]

LATE-NC aggravates GVD-mediated necroptosis in Alzheimer's disease.

Journal: Acta neuropathologica communications

Status: data only, 1 dataset cited

[42155] doi:10.3390/ijms231710073 [paper, data]

Metabolic and Cellular Compartments of Acetyl-CoA in the Healthy and Diseased Brain.

Journal: International journal of molecular sciences

Status: data only, 10 datasets cited

Friday, 2 September 2022 (31 papers)

[42156] doi:10.1002/hbm.26053 [paper, repository]

The effect of self-generated versus externally generated actions on timing, duration, and amplitude of blood oxygen level dependent response for visual feedback processing.

Journal: Human brain mapping

Authors' code: cpernet/spmup (GPL-3.0)

Status: code verified, 77 files readable, 3 matches

[42157] doi:10.1002/hbm.26061 [paper, repository]

Functional brain connectivity during exposure to the scale and color of interior built environments.

Journal: Human brain mapping

Authors' code: OSF 9bsxe (no license)

Status: code verified, 2 files readable, 2 matches

[42158] doi:10.1007/s10827-022-00833-9 [paper, repository]

Topological dissimilarities of hierarchical resting networks in type 2 diabetes mellitus and obesity.

Journal: Journal of computational neuroscience

Authors' code: aranyics/data-ud-diabconn (no license), Zenodo 6447985 (other-open)

Status: code verified, 54 files readable, 7 matches

[42159] doi:10.1016/j.zemedi.2022.08.001 [paper, repository]

BFRnet: A deep learning-based MR background field removal method for QSM of the brain containing significant pathological susceptibility sources.

Journal: Zeitschrift fur medizinische Physik

Authors' code: sunhongfu/deepmri (GPL-3.0), Zenodo 21549331 (other-closed), sunhongfu/BFRnet (no license), Zenodo 22809165 (other-closed), Zenodo 21549332 (other-closed), Zenodo 21441873 (other-closed), Zenodo 21441874 (other-closed), Zenodo 22091272 (other-closed), Zenodo 21733984 (other-closed), Zenodo 21697743 (other-closed)

Status: code verified, 52 files readable, 3 matches

[42160] doi:10.1038/s41380-022-01725-1 [paper, repository]

Integrative multi-omics landscape of fluoxetine action across 27 brain regions reveals global increase in energy metabolism and region-specific chromatin remodelling.

Journal: Molecular psychiatry

Authors' code: arulrayan/Integrative-multi-omics-landscape-of-fluoxetine-action-across-27-brain-regions (no license)

Status: code verified, 14 files readable

[42161] doi:10.1038/s41386-022-01426-x [paper, data]

Neuroimaging in schizophrenia: an overview of findings and their implications for synaptic changes.

Journal: Neuropsychopharmacology : official publication of the American College of Neuropsychopharmacology

Status: data only, 2 datasets cited

[42162] doi:10.1038/s41467-022-32646-w [paper, repository]

Small, correlated changes in synaptic connectivity may facilitate rapid motor learning.

Journal: Nature communications

Authors' code: babaf/motor-adaptation-local-vs-input (MIT)

Status: code verified, 9 files readable, 4 matches

[42163] doi:10.1038/s41467-022-32883-z [paper, data]

Structural basis for Gemin5 decamer-mediated mRNA binding.

Journal: Nature communications

Status: data only, 1 dataset cited

[42164] doi:10.1038/s41467-022-32886-w [paper, repository]

Fast, efficient, and accurate neuro-imaging denoising via supervised deep learning.

Journal: Nature communications

Authors' code: CSBDeep/CSBDeep (BSD-3-Clause), AiviaCommunity/3D-RCAN (CC-BY-NC-4.0), shiveshc/whole-brain_DeepDenoising (GPL-2.0)

Status: code verified, 93 files readable, 8 matches

[42165] doi:10.1038/s41598-022-18987-y [paper, repository]

The trend of disruption in the functional brain network topology of Alzheimer's disease.

Journal: Scientific reports

Authors' code: Alirezafathian/fmriprediction (MIT)

Status: code verified, 12 files readable

[42166] doi:10.1038/s41598-022-19106-7 [paper, data]

Genome-wide association study of the human brain functional connectome reveals strong vascular component underlying global network efficiency.

Journal: Scientific reports

Status: data only, 2 datasets cited

[42167] doi:10.1038/s41598-022-19175-8 [paper, repository]

Mechanosensitive expression of the mesenchymal subtype marker connective tissue growth factor in glioblastoma.

Journal: Scientific reports

Authors' code: christophmark/imagej-interactive-thresholding (MIT)

Status: empty repository, 2 files readable

[42168] doi:10.1038/s41598-022-19417-9 [paper]

Dynamics of phase oscillator networks with synaptic weight and structural plasticity.

Journal: Scientific reports

Status: code on request

[42169] doi:10.1038/s42003-022-03795-x [paper, repository]

The Polygenic Risk Score Knowledge Base offers a centralized online repository for calculating and contextualizing polygenic risk scores.

Journal: Communications biology

Authors' code: kauwelab/PolyRiskScore (no license), Zenodo 6705589 (other-open)

Status: code verified, 90 files readable, 11 matches

[42170] doi:10.1186/s12868-022-00738-4 [paper, data]

Examining the role of paraoxonase 2 in the dopaminergic system of the mouse brain.

Journal: BMC neuroscience

Status: data only, 1 dataset cited

[42171] doi:10.1186/s12871-022-01822-2 [paper, repository]

Assessment of the effects of dexmedetomidine on outcomes of traumatic brain injury using propensity score analysis.

Journal: BMC anesthesiology

Authors' code: MIT-LCP/mimic-code (MIT)

Status: code verified, 79 files readable, 3 matches

[42172] doi:10.1186/s12935-022-02688-7 [paper, data]

Correlation of the prognostic value of FNDC4 in glioblastoma with macrophage polarization.

Journal: Cancer cell international

Status: data only, 1 dataset cited

[42173] doi:10.1186/s13024-022-00562-8 [paper, data]

Trem2 deletion enhances tau dispersion and pathology through microglia exosomes.

Journal: Molecular neurodegeneration

Status: data only, 2 datasets cited

[42174] doi:10.1186/s13052-022-01350-2 [paper, data]

Polymorphisms of the sodium voltage-gated channel, alpha subunit 1 (SCN1A -A3184G) gene among children with non-lesional epilepsy: a case-control study.

Journal: Italian journal of pediatrics

Status: data only, 1 dataset cited

[42175] doi:10.1371/journal.pcbi.1010431 [paper, repository]

High-order functional redundancy in ageing explained via alterations in the connectome in a whole-brain model.

Journal: PLoS computational biology

Authors' code: brincolab/High-Order-interactions (CC0-1.0), concog/fastdmf (BSD-3-Clause)

Status: code verified, 293 files readable, 4 matches

[42176] doi:10.1371/journal.pcbi.1010481 [paper, repository]

Optimal anti-amyloid-beta therapy for Alzheimer's disease via a personalized mathematical model.

Journal: PLoS computational biology

Authors' code: whao2008/AD_optimal_control (no license)

Status: code verified, 6 files readable

[42177] doi:10.3389/fnana.2022.988015 [paper, data]

Neural activity patterns in the chemosensory network encoding vomeronasal and olfactory information in mice.

Journal: Frontiers in neuroanatomy

Status: data only, 2 datasets cited

[42178] doi:10.3389/fncom.2022.903947 [paper, repository]

Cannabinoid signaling and risk in Huntington's disease.

Journal: Frontiers in computational neuroscience

Authors' code: JamesHumble/Humble-Kozloski-Cannabinoid-Signaling (no license)

Status: code verified, 38 files readable, 3 matches

[42179] doi:10.3389/fnhum.2022.925242 [paper, data]

Why do mothers never stop grieving for their deceased children? Enduring alterations of brain connectivity and function.

Journal: Frontiers in human neuroscience

Status: data only, 1 dataset cited

[42180] doi:10.3389/fninf.2022.961089 [paper, data]

Decoding EEG rhythms offline and online during motor imagery for standing and sitting based on a brain-computer interface.

Journal: Frontiers in neuroinformatics

Status: data only, 1 dataset cited

[42181] doi:10.3389/fphar.2022.971243 [paper, data]

Effects of Tibetan medicine metacinnabar (β-HgS) combined with imipramine or sertraline on depression-like symptoms in mice.

Journal: Frontiers in pharmacology

Status: data only, 1 dataset cited

[42182] doi:10.3389/fphar.2022.974949 [paper, data]

Neferine alleviates chronic stress-induced depression by regulating monoamine neurotransmitter secretion and gut microbiota structure.

Journal: Frontiers in pharmacology

Status: data only, 1 dataset cited

[42183] doi:10.3390/biomedicines10092163 [paper, data]

Sex-Related Differences in Voluntary Alcohol Intake and mRNA Coding for Synucleins in the Brain of Adult Rats Prenatally Exposed to Alcohol.

Journal: Biomedicines

Status: data only, 1 dataset cited

[42184] doi:10.3390/brainsci12091185 [paper, data]

Effects of Repetitive Transcranial Magnetic Stimulation on Gait and Postural Control Ability of Patients with Executive Dysfunction after Stroke.

Journal: Brain sciences

Status: data only, 1 dataset cited

[42185] doi:10.7554/elife.77745 [paper, repository]

Stage-dependent differential influence of metabolic and structural networks on memory across Alzheimer's disease continuum.

Journal: eLife

Authors' code: hzlab/2021Qian_ADNI_FDG (GPL-3.0)

Status: code verified, 4 files readable

[42186] doi:10.7554/elife.79612 [paper, data]

Brain atlas for glycoprotein hormone receptors at single-transcript level.

Journal: eLife

Status: data only, 1 dataset cited

Thursday, 1 September 2022 (83 papers)

[42187] doi:10.1001/jamapsychiatry.2022.2196 [paper, data]

Association Between Brain Structure and Alcohol Use Behaviors in Adults: A Mendelian Randomization and Multiomics Study.

Journal: JAMA psychiatry

Status: data only, 1 dataset cited

[42188] doi:10.1002/ctm2.990 [paper, data]

The combination of DNA methylome and transcriptome revealed the intergenerational inheritance on the influence of advanced maternal age.

Journal: Clinical and translational medicine

Status: data only, 7 datasets cited

[42189] doi:10.1007/s00068-022-02087-7 [paper]

The influence of inter-hospital transfers on mortality in severely injured patients.

Journal: European journal of trauma and emergency surgery : official publication of the European Trauma Society

Status: code on request

[42190] doi:10.1016/j.bbi.2022.08.016 [paper]

Systemic inflammation enhances stimulant-induced striatal dopamine elevation in tobacco smokers.

Journal: Brain, behavior, and immunity

Status: code on request

[42191] doi:10.1016/j.cell.2022.07.026 [paper, repository]

A serotonergic axon-cilium synapse drives nuclear signaling to alter chromatin accessibility.

Journal: Cell

Authors' code: Biomedical-Imaging-Group/OrientationJ (GPL-3.0)

Status: code verified, 122 files readable, 1 match

[42192] doi:10.1016/j.cell.2022.08.019 [paper, repository]

Cell-type-specific population dynamics of diverse reward computations.

Journal: Cell

Authors' code: google-research/computation-thru-dynamics (Apache-2.0), SylwestrakLab/HbRewardCellTypes (no license), youngju-jo (no license)

Status: code verified, 73 files readable, 6 matches

[42193] doi:10.1016/j.celrep.2022.111333 [paper]

Activation of VIP interneurons in the prefrontal cortex ameliorates neuropathic pain aversiveness.

Journal: Cell reports

Status: code on request

[42194] doi:10.1016/j.celrep.2022.111334 [paper]

Medial orbitofrontal neurotrophin systems integrate hippocampal input into outcome-specific value representations.

Journal: Cell reports

Status: code on request

[42195] doi:10.1016/j.celrep.2022.111344 [paper, data]

GABP couples oncogene signaling to telomere regulation in TERT promoter mutant cancer.

Journal: Cell reports

Status: code on request, 1 dataset cited

[42196] doi:10.1016/j.celrep.2022.111369 [paper]

Microglial control of neuronal development via somatic purinergic junctions.

Journal: Cell reports

Status: code on request

[42197] doi:10.1016/j.celrep.2022.111372 [paper]

Fringe-positive Golgi outposts unite temporal Furin 2 convertase activity and spatial Delta signal to promote dendritic branch retraction.

Journal: Cell reports

Status: code on request

[42198] doi:10.1016/j.celrep.2022.111379 [paper]

Nucleoporins are degraded via upregulation of ESCRT-III/Vps4 complex in Drosophila models of C9-ALS/FTD.

Journal: Cell reports

Status: code on request

[42199] doi:10.1016/j.celrep.2022.111383 [paper, repository]

Error correction and improved precision of spike timing in converging cortical networks.

Journal: Cell reports

Authors' code: Zenodo 7025664 (other-open), eranstarklab/spiketiming (no license)

Status: code verified, 58 files readable, 4 matches

[42200] doi:10.1016/j.celrep.2022.111394 [paper]

Dynamic reorganization of the cortico-basal ganglia-thalamo-cortical network during task learning.

Journal: Cell reports

Status: code on request

[42201] doi:10.1016/j.celrep.2022.111395 [paper, repository]

Neural computations underlying contextual processing in humans.

Journal: Cell reports

Authors' code: Zenodo 6970426 (other-open)

Status: code verified, 5 files readable

[42202] doi:10.1016/j.celrep.2022.111417 [paper, data]

Fasting-mimicking diet cycles reduce neuroinflammation to attenuate cognitive decline in Alzheimer's models.

Journal: Cell reports

Status: code on request, 1 dataset cited

[42203] doi:10.1016/j.celrep.2022.111426 [paper, repository]

Dopamine activates astrocytes in prefrontal cortex via α1-adrenergic receptors.

Journal: Cell reports

Authors' code: yu-lab-vt/AQuA (no license)

Status: code verified, 297 files readable

[42204] doi:10.1016/j.celrep.2022.111431 [paper, repository]

Nanoscopic dopamine transporter distribution and conformation are inversely regulated by excitatory drive and D2 autoreceptor activity.

Journal: Cell reports

Authors' code: GetherLab/Super-Resolution-Data-Analysis (no license), Zenodo 7016376 (other-open)

Status: code verified, 20 files readable

[42205] doi:10.1016/j.celrep.2022.111440 [paper]

Dopamine D2 receptors bidirectionally regulate striatal enkephalin expression: Implications for cocaine reward.

Journal: Cell reports

Status: code on request

[42206] doi:10.1016/j.xpro.2022.101533 [paper]

Robust neuronal differentiation of human embryonic stem cells for neurotoxicology.

Journal: STAR protocols

Status: code on request

[42207] doi:10.1038/s41398-022-02136-0 [paper, repository]

Microstructural imaging and transcriptomics of the basal forebrain in first-episode psychosis.

Journal: Translational psychiatry

Authors' code: mtpark89/NBM_transcriptomic (Apache-2.0)

Status: code verified, 6 files readable, 6 matches

[42208] doi:10.1038/s41467-022-32267-3 [paper, repository]

Decoding the olfactory map through targeted transcriptomics links murine olfactory receptors to glomeruli.

Journal: Nature communications

Authors' code: kanazian/obmap (no license)

Status: code verified, 3 files readable

[42209] doi:10.1038/s41592-022-01569-1 [paper, repository]

Antibody stabilization for thermally accelerated deep immunostaining.

Journal: Nature methods

Authors' code: AkaBurri/ProjSPEARs (no license)

Status: code verified, 1 file readable

[42210] doi:10.1038/s41597-022-01647-1 [paper, data]

A large EEG dataset for studying cross-session variability in motor imagery brain-computer interface.

Journal: Scientific data

Status: data only, 2 datasets cited

[42211] doi:10.1038/s42003-022-03858-z [paper, data]

Functional imaging analyses reveal prototype and exemplar representations in a perceptual single-category task.

Journal: Communications biology

Status: data only, 1 dataset cited

[42212] doi:10.1055/s-0042-1755269 [paper, data]

Characterization of persistent headache attributed to past stroke.

Journal: Arquivos de neuro-psiquiatria

Status: data only, 1 dataset cited

[42213] doi:10.1055/s-0042-1755324 [paper, data]

The preoperative neutrophil-to-lymphocyte ratio predictive value for survival in patients with brain metastasis.

Journal: Arquivos de neuro-psiquiatria

Status: data only, 1 dataset cited

[42214] doi:10.1093/brain/awab473 [paper, repository]

Distinct subcellular autophagy impairments in induced neurons from patients with Huntington's disease.

Journal: Brain : a journal of neurology

Authors' code: raquelgarza/iN_HD (no license)

Status: code verified, 17 files readable, 1 match

[42215] doi:10.1093/brain/awac144 [paper, data]

Clearance of variant Creutzfeldt-Jakob disease prions in vivo by the Hsp70 disaggregase system.

Journal: Brain : a journal of neurology

Status: data only, 1 dataset cited

[42216] doi:10.1093/cercor/bhab454 [paper, repository]

Lateral prefrontal cortex is a hub for music production from structural rules to movements.

Journal: Cerebral cortex (New York, N.Y. : 1991)

Authors' code: drive.google.com/file/d (no license), OSF b5cav (no license)

Status: code verified, 11 files readable

[42217] doi:10.1093/cercor/bhab459 [paper, data]

Perceptual coupling and decoupling are associated with individual differences in working memory encoding and maintenance.

Journal: Cerebral cortex (New York, N.Y. : 1991)

Status: data only, 1 dataset cited

[42218] doi:10.1093/cercor/bhab487 [paper, data]

Dynamic subcortical modulators of human default mode network function.

Journal: Cerebral cortex (New York, N.Y. : 1991)

Status: data only, 1 dataset cited

[42219] doi:10.1093/ijnp/pyac038 [paper, repository]

Alpha-2 Adrenoreceptor Antagonist Yohimbine Potentiates Consolidation of Conditioned Fear.

Journal: The international journal of neuropsychopharmacology

Authors' code: Zenodo 6833565 (CC-BY-4.0)

Status: code verified, 8 files readable, 1 match

[42220] doi:10.1093/nar/gkac731 [paper, data]

Topoisomerase IIA in adult NSCs regulates SVZ neurogenesis by transcriptional activation of Usp37.

Journal: Nucleic acids research

Status: data only, 4 datasets cited

[42221] doi:10.1093/neuonc/noac025 [paper]

Development and validation of a deep-learning model for detecting brain metastases on 3D post-contrast MRI: a multi-center multi-reader evaluation study.

Journal: Neuro-oncology

Status: code on request

[42222] doi:10.1093/scan/nsac008 [paper, repository]

Mine or ours? Neural basis of the exploitation of common-pool resources.

Journal: Social cognitive and affective neuroscience

Authors' code: mmartinezsaito/fish-cpr (MIT)

Status: code verified, 8 files readable, 4 matches

[42223] doi:10.1093/scan/nsac009 [paper, data]

Toddler-mother attachment moderates adolescents' behavioral and neural evaluation of trustworthiness.

Journal: Social cognitive and affective neuroscience

Status: data only, 1 dataset cited

[42224] doi:10.1093/scan/nsac011 [paper, repository]

Mu rhythm suppression over sensorimotor regions is associated with greater empathic accuracy.

Journal: Social cognitive and affective neuroscience

Authors' code: OSF k7bmw (no license)

Status: code verified, 1 file readable, 2 matches

[42225] doi:10.1111/ejn.15808 [paper, repository]

Largely unaffected auditory and visual sensory processing phenotypes in the evoked potentials of Fmr1 KO2 mice.

Journal: The European journal of neuroscience

Authors' code: OSF cvefk (no license)

Status: code verified, 9 files readable, 6 matches

[42226] doi:10.1136/jitc-2021-004452 [paper, data]

LRIG2 promotes glioblastoma progression by modulating innate antitumor immunity through macrophage infiltration and polarization.

Journal: Journal for immunotherapy of cancer

Status: data only, 1 dataset cited

[42227] doi:10.1158/1078-0432.ccr-22-0803 [paper, repository]

Upfront Biology-Guided Therapy in Diffuse Intrinsic Pontine Glioma: Therapeutic, Molecular, and Biomarker Outcomes from PNOC003.

Journal: Clinical cancer research : an official journal of the American Association for Cancer Research

Authors' code: d3b-center/OpenPBTA-workflows (Apache-2.0), AlexsLemonade/OpenPBTA-analysis (CC-BY-4.0), alexslemonade.github.io/openpbta-manuscript (no license)

Status: code verified, 330 files readable, 3 matches

[42228] doi:10.1159/000525701 [paper, data]

Case Report: Three Case Reports of Rapidly Progressive Dementias and Narrative Review.

Journal: Case reports in neurology

Status: data only, 1 dataset cited

[42229] doi:10.1159/000527876 [paper, data]

Ischemic Optic Neuropathy Secondary to Varicella-Zoster Vasculitis Mimicking Giant Cell Arteritis: Case Report.

Journal: Case reports in neurology

Status: data only, 1 dataset cited

[42230] doi:10.1159/000527910 [paper, data]

Very Challenging Cases to Diagnose: Concealed Foreign Bodies in the Upper Palpebral Conjunctiva Should Always Be Kept in Mind in Unresolved, Long-Lasting Chronic Ocular Pain.

Journal: Case reports in ophthalmology

Status: data only, 1 dataset cited

[42231] doi:10.1159/000527989 [paper, data]

Vestibular Schwannoma Presenting as Acute Vertigo Mimicking Vestibular Neuritis.

Journal: Case reports in neurology

Status: data only, 1 dataset cited

[42232] doi:10.1162/opmi_a_00059 [paper, repository]

Neural Networks Track the Logical Complexity of Boolean Concepts.

Journal: Open mind : discoveries in cognitive science

Authors' code: thelogicalgrammar/ANN_complexity (MIT)

Status: code verified, 22 files readable, 1 match

[42233] doi:10.1167/jov.22.10.19 [paper, repository]

Internal noise measures in coarse and fine motion direction discrimination tasks and the correlation with autism traits.

Journal: Journal of vision

Authors' code: OSF 4gdkt (no license)

Status: code verified

[42234] doi:10.1167/jov.22.10.20 [paper, repository]

Alpha oscillations and stimulus-evoked activity dissociate metacognitive reports of attention, visibility, and confidence in a rapid visual detection task.

Journal: Journal of vision

Authors' code: OSF j2cah (no license)

Status: code verified, 60 files readable, 10 matches

[42235] doi:10.1167/jov.22.10.3 [paper, repository]

Machine learning methods detect arm movement impairments in a patient with parieto-occipital lesion using only early kinematic information.

Journal: Journal of vision

Authors' code: Zenodo 6901261 (CC-BY-4.0)

Status: code verified

[42236] doi:10.1167/tvst.11.9.29 [paper, repository]

Etiology of Macular Edema Defined by Deep Learning in Optical Coherence Tomography Scans.

Journal: Translational vision science & technology

Authors' code: yeisonlegarda/EtiologicClassificationOfMacularEdemaUsing-ADeepLearningApproachOpticalCoherenceTomographyScans (no license)

Status: code verified, 3 files readable, 1 match

[42237] doi:10.1186/s12883-022-02850-8 [paper, data]

Effect of β2-microglobulin in evaluating the severity and prognosis of brain injury: a clinical study.

Journal: BMC neurology

Status: data only, 1 dataset cited

[42238] doi:10.1186/s12974-022-02542-7 [paper, data]

Drp1 activates ROS/HIF-1α/EZH2 and triggers mitochondrial fragmentation to deteriorate hypercalcemia-associated neuronal injury in mouse model of chronic kidney disease.

Journal: Journal of neuroinflammation

Status: data only, 7 datasets cited

[42239] doi:10.1186/s40708-022-00167-3 [paper, repository]

ABOT: an open-source online benchmarking tool for machine learning-based artefact detection and removal methods from neuronal signals.

Journal: Brain informatics

Authors' code: Zenodo 5789913 (other-open), ignaciofabietti/abot (MIT)

Status: code verified, 6 files readable, 1 match

[42240] doi:10.1503/jpn.220083 [paper, repository]

Striatal reactivity during emotion and reward relates to approach-avoidance conflict behaviour and is altered in adults with anxiety or depression.

Journal: Journal of psychiatry & neuroscience : JPN

Authors' code: OSF cdxqj (no license)

Status: code verified, 10 files readable

[42241] doi:10.1523/eneuro.0040-22.2022 [paper, repository]

The Mitochondrial Enzyme 17βHSD10 Modulates Ischemic and Amyloid-β-Induced Stress in Primary Mouse Astrocytes.

Journal: eNeuro

Authors' code: stuartlab/mina (GPL-3.0)

Status: code verified, 14 files readable, 2 matches

[42242] doi:10.1523/eneuro.0051-22.2022 [paper, repository]

Active Vision in Sight Recovery Individuals with a History of Long-Lasting Congenital Blindness.

Journal: eNeuro

Authors' code: deepgaze.bethgelab.org (no license)

Status: code found, still to be checked

[42243] doi:10.1523/eneuro.0139-22.2022 [paper, data]

Axonal Domain Structure as a Putative Identifier of Neuron-Specific Vulnerability to Oxidative Stress in Cultured Neurons.

Journal: eNeuro

Status: data only, 1 dataset cited

[42244] doi:10.1523/eneuro.0159-22.2022 [paper, repository]

Visual Working Memory Recruits Two Functionally Distinct Alpha Rhythms in Posterior Cortex.

Journal: eNeuro

Authors' code: OSF h56b3 (no license)

Status: code verified, 10 files readable, 7 matches

[42245] doi:10.1523/eneuro.0169-22.2022 [paper, repository]

Decreased Dorsomedial Striatum Direct Pathway Neuronal Activity Is Required for Learned Motor Coordination.

Journal: eNeuro

Authors' code: DSulzerLab/Motor_coordination_score (MIT), DSulzerLab/Calcium_peaks_analysis (MIT), DSulzerLab (no license)

Status: code verified, 9 files readable, 4 matches

[42246] doi:10.1523/eneuro.0201-22.2022 [paper, repository]

Sound-Evoked Responses of Distinct Neuron Classes from the Tail of the Striatum.

Journal: eNeuro

Authors' code: taskontrol.readthedocs.io (no license)

Status: code verified

[42247] doi:10.1523/eneuro.0238-22.2022 [paper, data]

Perinatal Morphine Exposure Leads to Sex-Dependent Executive Function Deficits and Microglial Changes in Mice.

Journal: eNeuro

Status: data only, 1 dataset cited

[42248] doi:10.1523/eneuro.0246-22.2022 [paper, repository]

Development of an Open Face Home Cage Running Wheel for Testing Activity-Based Anorexia and Other Applications.

Journal: eNeuro

Authors' code: borglandlab/RunningWheel (no license)

Status: code verified, 3 files readable, 1 match

[42249] doi:10.1523/eneuro.0283-22.2022 [paper, repository]

Low-Cost Platform for Multianimal Chronic Local Field Potential Video Monitoring with Graphical User Interface (GUI) for Seizure Detection and Behavioral Scoring.

Journal: eNeuro

Authors' code: EwellNeuroLab/Chronic-Recordings-Bonsai-Workflow (no license), EwellNeuroLab (no license)

Status: code verified, 1 file readable

[42250] doi:10.1523/eneuro.0342-22.2022 [paper, repository]

A Uniform and Isotropic Cytoskeletal Tiling Fills Dendritic Spines.

Journal: eNeuro

Authors' code: feblmu/cytoskeleton (MIT)

Status: code verified, 4 files readable, 6 matches

[42251] doi:10.1523/eneuro.0508-21.2022 [paper, repository]

Commanding or Being a Simple Intermediary: How Does It Affect Moral Behavior and Related Brain Mechanisms?

Journal: eNeuro

Authors' code: ldeangelisphys/ft2nii (no license)

Status: code verified, 2 files readable, 2 matches

[42252] doi:10.15252/msb.202110514 [paper, repository]

A negative feedback loop in the GPCR pathway underlies efficient coding of external stimuli.

Journal: Molecular systems biology

Authors' code: itskov/WormSegmentation (no license), zaslab/negative_feedback (no license)

Status: code verified, 2 files readable

[42253] doi:10.15252/msb.202211080 [paper, repository]

Vesalius: high-resolution in silico anatomization of spatial transcriptomic data using image analysis.

Journal: Molecular systems biology

Authors' code: QIFEIDKN/STAGATE (MIT), jianhuupenn/SpaGCN (MIT), RubD/Giotto (MIT), dmcable/spacexr (GPL-3.0), patrickcnmartin/vesalius (GPL-3.0)

Status: code verified, 229 files readable, 10 matches

[42254] doi:10.15430/jcp.2022.27.3.192 [paper, data]

A Deep Learning Architecture for Meningioma Brain Tumor Detection and Segmentation.

Journal: Journal of cancer prevention

Status: data only, 1 dataset cited

[42255] doi:10.1590/0100-3984.2021.0091-en [paper, data]

Idiopathic intracranial hypertension: an illustrated guide for the trainee radiologist.

Journal: Radiologia brasileira

Status: data only, 1 dataset cited

[42256] doi:10.1590/0100-3984.2021.0141 [paper, data]

Interictal and postictal ¹⁸F-FDG PET/CT in epileptogenic zone localization.

Journal: Radiologia brasileira

Status: data only, 2 datasets cited

[42257] doi:10.1590/0100-3984.2021.0149-en [paper, data]

Alterations on magnetic resonance imaging of the neonatal brain: correlations with prenatal risk factors and transfontanellar ultrasound findings.

Journal: Radiologia brasileira

Status: data only, 2 datasets cited

[42258] doi:10.1590/1980-5764-dn-2022-s102pt [paper, data]

Diagnosis of Alzheimer's disease: recommendations of the Scientific Department of Cognitive Neurology and Aging of the Brazilian Academy of Neurology.

Journal: Dementia & neuropsychologia

Status: data only, 1 dataset cited

[42259] doi:10.1590/1980-5764-dn-2022-s103pt [paper, data]

Diagnosis of frontotemporal dementia: recommendations of the Scientific Department of Cognitive Neurology and Aging of the Brazilian Academy of Neurology.

Journal: Dementia & neuropsychologia

Status: data only, 1 dataset cited

[42260] doi:10.21037/atm-22-3598 [paper]

MicroRNA-668-3p regulates oxidative stress and cell damage induced by Aβ1-42 by targeting the <i>OXR1</i>/p53-p21 axis.

Journal: Annals of translational medicine

Status: data only

[42261] doi:10.3389/fnagi.2022.951197 [paper, repository]

Identification of a 6-RBP gene signature for a comprehensive analysis of glioma and ischemic stroke: Cognitive impairment and aging-related hypoxic stress.

Journal: Frontiers in aging neuroscience

Authors' code: rhiever/tpot (LGPL-3.0)

Status: code verified, 108 files readable, 2 matches

[42262] doi:10.3389/fnagi.2022.970796 [paper, data]

Exploring the key ferroptosis-related gene in the peripheral blood of patients with Alzheimer's disease and its clinical significance.

Journal: Frontiers in aging neuroscience

Status: data only, 1 dataset cited

[42263] doi:10.3389/fnagi.2022.972282 [paper, repository]

Reduced white matter venous density on MRI is associated with neurodegeneration and cognitive impairment in the elderly.

Journal: Frontiers in aging neuroscience

Authors' code: braincharter/vasculature (no license)

Status: code verified, 21 files readable, 1 match

[42264] doi:10.3389/fnins.2022.875828 [paper, data]

A tale of two connectivities: intra- and inter-subject functional connectivity jointly enable better prediction of social abilities.

Journal: Frontiers in neuroscience

Status: data only, 1 dataset cited

[42265] doi:10.3389/fnins.2022.904003 [paper, repository]

Synchronization of ear-EEG and audio streams in a portable research hearing device.

Journal: Frontiers in neuroscience

Authors' code: steffendasenbrock/SynchronizationEarEEGAudioStreams (MIT)

Status: code verified, 29 files readable, 4 matches

[42266] doi:10.3390/ijerph191710892 [paper, repository]

Multiple Time Series Fusion Based on LSTM: An Application to CAP A Phase Classification Using EEG.

Journal: International journal of environmental research and public health

Authors' code: Dntfreitas/EA_Time_Series_Fusion_Optimizer (no license)

Status: code verified, 6 files readable, 5 matches

[42267] doi:10.3390/ijms23179946 [paper, data]

Targeting the Mitochondrial Protein VDAC1 as a Potential Therapeutic Strategy in ALS.

Journal: International journal of molecular sciences

Status: data only, 1 dataset cited

[42268] doi:10.3390/ijms23179948 [paper, data]

Detailed Analysis of Dorsal-Ventral Gradients of Gene Expression in the Hippocampus of Adult Rats.

Journal: International journal of molecular sciences

Status: data only, 1 dataset cited

[42269] doi:10.3390/ijms23179965 [paper, data]

The Oncolytic Adenovirus XVir-N-31, in Combination with the Blockade of the PD-1/PD-L1 Axis, Conveys Abscopal Effects in a Humanized Glioblastoma Mouse Model.

Journal: International journal of molecular sciences

Status: data only, 1 dataset cited

Wednesday, 31 August 2022 (18 papers)

[42270] doi:10.1016/j.dcn.2022.101149 [paper, repository]

Constraints on infants' ability to extract non-adjacent dependencies from vowels and consonants.

Journal: Developmental cognitive neuroscience

Authors' code: OSF 6t2zu (no license)

Status: code found, still to be checked

[42271] doi:10.1016/j.isci.2022.105036 [paper]

Theta coupling within the medial prefrontal cortex regulates fear extinction and renewal.

Journal: iScience

Status: code on request

[42272] doi:10.1038/s41586-022-05137-7 [paper, repository]

The role of somatosensory innervation of adipose tissues.

Journal: Nature

Authors' code: yelabscripps (no license)

Status: code verified

[42273] doi:10.1038/s41586-022-05139-5 [paper]

A brainstem map for visceral sensations.

Journal: Nature

Status: code on request

[42274] doi:10.1091/mbc.e22-03-0111 [paper, repository]

Spatiotemporal analysis of axonal autophagosome-lysosome dynamics reveals limited fusion events and slow maturation.

Journal: Molecular biology of the cell

Authors' code: lenafabr/autophagyTransportModel (GPL-3.0), lenafabr/particleDynamics1D (GPL-3.0)

Status: code verified, 47 files readable, 4 matches

[42275] doi:10.1098/rsif.2022.0258 [paper, repository]

Active anemosensing hypothesis: how flying insects could estimate ambient wind direction through sensory integration and active movement.

Journal: Journal of the Royal Society, Interface

Authors' code: florisvb/active_anemosensing (no license), doi:10.6084/m9.figshare.c.6145875 (no license)

Status: code verified, 29 files readable, 3 matches

[42276] doi:10.1111/ejn.15798 [paper, repository]

An analytical method to separate modality-specific and nonspecific sensory components of event-related potentials.

Journal: The European journal of neuroscience

Authors' code: OSF jm62z (no license)

Status: code verified, 3 files readable

[42277] doi:10.1126/sciadv.abn5899 [paper, repository]

Crossing nerve transfer drives sensory input-dependent plasticity for motor recovery after brain injury.

Journal: Science advances

Authors' code: datadryad.org/stash/share/-od1h4ato8mn9u7c75g38cwnmj0x87l-esbxtnswbho (no license)

Status: dead link

[42278] doi:10.1126/sciadv.abn8092 [paper, data]

Ventromedial hypothalamic OGT drives adipose tissue lipolysis and curbs obesity.

Journal: Science advances

Status: data only, 1 dataset cited

[42279] doi:10.1126/sciadv.abn8616 [paper, repository]

When self comes to a wandering mind: Brain representations and dynamics of self-generated concepts in spontaneous thought.

Journal: Science advances

Authors' code: Zenodo 6825023 (CC-BY-4.0)

Status: code verified, 8 files readable, 9 matches

[42280] doi:10.1126/sciadv.abp8321 [paper, data]

A lysosomal regulatory circuit essential for the development and function of microglia.

Journal: Science advances

Status: data only, 1 dataset cited

[42281] doi:10.2147/cmar.s367020 [paper, data]

Identification of Novel tRNA-Leu-CAA-Derived tsRNAs for the Diagnosis and Prognosis of Diffuse Gliomas.

Journal: Cancer management and research

Status: data only, 1 dataset cited

[42282] doi:10.3389/fendo.2022.889122 [paper, data]

Gabra5 plays a sexually dimorphic role in POMC neuron activity and glucose balance.

Journal: Frontiers in endocrinology

Status: data only, 1 dataset cited

[42283] doi:10.3389/fonc.2022.982417 [paper, repository]

Combined proton radiography and irradiation for high-precision preclinical studies in small animals.

Journal: Frontiers in oncology

Authors' code: schneidorlein/ScattERR (BSD-3-Clause), jo-mueller/RadiAiDD (MIT)

Status: code verified, 35 files readable, 1 match

[42284] doi:10.3389/fphar.2022.946548 [paper, data]

Herbal medicine for amyotrophic lateral sclerosis: A systematic review and meta-analysis.

Journal: Frontiers in pharmacology

Status: data only, 2 datasets cited

[42285] doi:10.3389/fphar.2022.990461 [paper, repository]

Identification and validation of roles of lysyl oxidases in the predictions of prognosis, chemotherapy and immunotherapy in glioma.

Journal: Frontiers in pharmacology

Authors' code: GuangchuangYu/enrichplot (no license)

Status: code verified, 58 files readable

[42286] doi:10.3390/cells11172713 [paper, data]

An Epitope-Specific LGI1-Autoantibody Enhances Neuronal Excitability by Modulating Kv1.1 Channel.

Journal: Cells

Status: data only, 2 datasets cited

[42287] doi:10.7554/elife.79557 [paper, repository]

Diverse states and stimuli tune olfactory receptor expression levels to modulate food-seeking behavior.

Journal: eLife

Authors' code: bastibe/Violinplot-Matlab (BSD-3-Clause)

Status: code verified, 6 files readable

Tuesday, 30 August 2022 (26 papers)

[42288] doi:10.1002/advs.202202149 [paper, repository]

D² Plot, a Matrix of DNA Density and Distance to Periphery, Reveals Functional Genome Regions.

Journal: Advanced science (Weinheim, Baden-Wurttemberg, Germany)

Authors' code: xjtu-omics/D2 (no license)

Status: code verified, 10 files readable, 1 match

[42289] doi:10.1002/hbm.26056 [paper, repository]

Brain-wide versus genome-wide vulnerability biomarkers for severe mental illnesses.

Journal: Human brain mapping

Authors' code: USC-IGC/ukbb_parser (no license)

Status: code verified, 15 files readable

[42290] doi:10.1016/j.ajhg.2022.08.008 [paper, repository]

Bi-allelic loss-of-function variants in TMEM147 cause moderate to profound intellectual disability with facial dysmorphism and pseudo-Pelger-Huët anomaly.

Journal: American journal of human genetics

Authors' code: johnwmillr/Facer (MIT)

Status: code verified, 8 files readable

[42291] doi:10.1016/j.ebiom.2022.104239 [paper, data]

Integrated single-cell transcriptomic analyses reveal that GPNMB-high macrophages promote PN-MES transition and impede T cell activation in GBM.

Journal: EBioMedicine

Status: data only, 1 dataset cited

[42292] doi:10.1016/j.mex.2022.101833 [paper, data]

Method for identification of 10 SSR markers from monkey genomes and its statistical inference with One & Two-way ANOVA.

Journal: MethodsX

Status: data only, 5 datasets cited

[42293] doi:10.1016/j.nicl.2022.103175 [paper, repository]

Brain-age is associated with progression to dementia in memory clinic patients.

Journal: NeuroImage. Clinical

Authors' code: biondof/BARCODE (no license)

Status: empty repository, 1 file readable

[42294] doi:10.1038/s41467-022-32507-6 [paper, data]

A prospective observational study of post-COVID-19 chronic fatigue syndrome following the first pandemic wave in Germany and biomarkers associated with symptom severity.

Journal: Nature communications

Status: data only, 1 dataset cited

[42295] doi:10.1038/s41593-022-01151-0 [paper, repository]

Behaviorally relevant decision coding in primary somatosensory cortex neurons.

Journal: Nature neuroscience

Authors' code: llerussell/PyBehavior (no license)

Status: dead link

[42296] doi:10.1038/s41598-022-14207-9 [paper, data]

Precuneus brain response changes differently during human-robot and human-human dyadic social interaction.

Journal: Scientific reports

Status: data only, 1 dataset cited

[42297] doi:10.1038/s41598-022-18162-3 [paper, repository]

Overt and implicit prosody contribute to neurophysiological responses previously attributed to grammatical processing.

Journal: Scientific reports

Authors' code: OSF qzbne (no license)

Status: code verified, 2 files readable

[42298] doi:10.1038/s42256-022-00519-y [paper, repository]

Reconstructing Kinetic Models for Dynamical Studies of Metabolism using Generative Adversarial Networks.

Journal: Nature machine intelligence

Authors' code: EPFL-LCSB/rekindle (Apache-2.0), EPFL-LCSB/rekindle (Apache-2.0), EPFL-LCSB/skimpy (Apache-2.0), Zenodo 6811220 (other-open)

Status: code verified, 1,931 files readable, 3 matches

[42299] doi:10.1084/jem.20221137 [paper, data]

A "multi-omics" analysis of blood-brain barrier and synaptic dysfunction in APOE4 mice.

Journal: The Journal of experimental medicine

Status: data only, 5 datasets cited

[42300] doi:10.1093/pnasnexus/pgac158 [paper, repository]

An electroencephalogram biomarker of fentanyl drug effects.

Journal: PNAS nexus

Authors' code: cran.r-project.org/web/packages (no license)

Status: code verified

[42301] doi:10.1101/gr.276409.121 [paper, repository]

Mosaic loss of Chromosome Y in aged human microglia.

Journal: Genome research

Authors' code: michaelcvermeulen/microglia-loss-of-y (no license)

Status: code verified, 15 files readable, 15 matches

[42302] doi:10.1117/1.nph.9.s2.s24001 [paper, repository]

Optical imaging and spectroscopy for the study of the human brain: status report.

Journal: Neurophotonics

Authors' code: wustl-orl/NeuroDOT_Py (MIT), lpollonini/phoebe (no license), lpollonini/qt-nirs (CC-BY-NC-SA-4.0), javierherreravega/MOCARTS (no license), nirfaster/NIRFASTer (BSD-3-Clause), rob-luke/fnirs-apps-sourcedata2bids (BSD-3-Clause)

Status: code verified, 448 files readable, 13 matches

[42303] doi:10.1186/s12987-022-00366-4 [paper, data]

Mathematical modelling of the CSF system: effects of microstructures and posture on optic nerve subarachnoid space dynamics.

Journal: Fluids and barriers of the CNS

Status: data only, 1 dataset cited

[42304] doi:10.1371/journal.pone.0273376 [paper, repository]

Action-value processing underlies the role of the dorsal anterior cingulate cortex in performance monitoring during self-regulation of affect.

Journal: PloS one

Authors' code: kabush/IN (MIT), supp:PMC9426889/pone.0273376.s020.zip (no license)

Status: code verified, 92 files readable, 4 matches

[42305] doi:10.1371/journal.pone.0273643 [paper, repository]

The world seems different in a social context: A neural network analysis of human experimental data.

Journal: PloS one

Authors' code: mmtsfasman/TheCentralTendency_model (no license)

Status: code verified, 16 files readable

[42306] doi:10.3389/fphar.2022.983853 [paper, data]

The mechanism of action of a novel neuroprotective low molecular weight dextran sulphate: New platform therapy for neurodegenerative diseases like Amyotrophic Lateral Sclerosis.

Journal: Frontiers in pharmacology

Status: data only, 1 dataset cited

[42307] doi:10.3390/e24091213 [paper, repository]

Improving Network Representation Learning via Dynamic Random Walk, Self-Attention and Vertex Attributes-Driven Laplacian Space Optimization.

Journal: Entropy (Basel, Switzerland)

Authors' code: SXiangHu/dSAFNE (no license)

Status: dead link

[42308] doi:10.3390/ijms23179852 [paper, data]

Chromosomal Instability Characterizes Pediatric Medulloblastoma but Is Not Tolerated in the Developing Cerebellum.

Journal: International journal of molecular sciences

Status: data only, 2 datasets cited

[42309] doi:10.3390/v14091923 [paper, repository]

Cortical Auditory Evoked Potentials in Children with Prenatal Exposure to Zika Virus.

Journal: Viruses

Authors' code: cnpq.br (no license)

Status: code verified

[42310] doi:10.7554/elife.77907 [paper, repository]

Contribution of behavioural variability to representational drift.

Journal: eLife

Authors' code: supp:PMC9481246/elife-77907-code1.zip (no license)

Status: code verified, 9 files readable

[42311] doi:10.7554/elife.79277 [paper, repository]

Neuroscout, a unified platform for generalizable and reproducible fMRI research.

Journal: eLife

Authors' code: neuroscout/neuroscout (BSD-3-Clause), neuroscout/neuroscout-cli (BSD-3-Clause), neuroscout.github.io/neuroscout-paper (no license), neurostuff/NiMARE (MIT), neuroscout/neuroscout-paper (no license), Zenodo 5898602 (Apache-2.0), Zenodo 5120201 (Apache-2.0), Zenodo 3363985 (MIT)

Status: code verified, 504 files readable, 10 matches

[42312] doi:10.7554/elife.79848 [paper, repository]

Fast, high-throughput production of improved rabies viral vectors for specific, efficient and versatile transsynaptic retrograde labeling.

Journal: eLife

Authors' code: git.ist.ac.at/asumser/rabies_tracers_in_vivo_analysis (no license)

Status: code verified

[42313] doi:10.7717/peerj.13987 [paper, repository]

Gender dimorphic M1 excitability during emotional processing: a transcranial magnetic stimulation study.

Journal: PeerJ

Authors' code: supp:PMC9438768/peerj-10-13987-s003.m (no license)

Status: code verified, 1 file readable

Monday, 29 August 2022 (35 papers, 23 on this page)

[42314] doi:10.1016/j.nicl.2022.103176 [paper, repository]

Linking cerebellar functional gradients to transdiagnostic behavioral dimensions of psychopathology.

Journal: NeuroImage. Clinical

Authors' code: MICA-MNI/BrainSpace (BSD-3-Clause), danizoeller/myPLS (GPL-2.0), thomasyeolab/cbig (MIT)

Status: code verified, 2,166 files readable, 5 matches

[42315] doi:10.1016/j.xpro.2022.101555 [paper, repository]

High-throughput scNMT protocol for multiomics profiling of single cells from mouse brain and pancreatic organoids.

Journal: STAR protocols

Authors' code: alexdobin/STAR (MIT)

Status: code verified, 331 files readable

[42316] doi:10.1021/acs.nanolett.1c04259 [paper, repository]

Near-Infrared Carbon Nanotube Tracking Reveals the Nanoscale Extracellular Space around Synapses.

Journal: Nano letters

Authors' code: royerlab/aydin (BSD-3-Clause)

Status: code verified, 594 files readable

[42317] doi:10.1038/s41467-022-32304-1 [paper, repository]

Subcortical-cortical dynamical states of the human brain and their breakdown in stroke.

Journal: Nature communications

Authors' code: sites.google.com/site/bctnet (no license), CorbettaLab/Favaretto2022NatComm (no license)

Status: code verified, 175 files readable, 10 matches

[42318] doi:10.1038/s41467-022-32741-y [paper, repository]

Degenerate boundaries for multiple-alternative decisions.

Journal: Nature communications

Authors' code: Zenodo 6625083 (other-open), sophieanne-baker/degenerateboundaries_natcomm22 (MIT)

Status: code verified, 86 files readable

[42319] doi:10.1038/s41467-022-32823-x [paper, repository]

A brainstem monosynaptic excitatory pathway that drives locomotor activities and sympathetic cardiovascular responses.

Journal: Nature communications

Authors' code: OSF tuhgm (no license)

Status: code verified, 5 files readable

[42320] doi:10.1038/s41531-022-00372-1 [paper]

Longitudinal corpus callosum microstructural decline in early-stage Parkinson's disease in association with akinetic-rigid symptom severity.

Journal: NPJ Parkinson's disease

Status: code on request

[42321] doi:10.1038/s41591-022-01941-w [paper, repository]

Pilot study of responsive nucleus accumbens deep brain stimulation for loss-of-control eating.

Journal: Nature medicine

Authors' code: rajatss123/LOC_NM_Code (no license)

Status: code verified, 3 files readable, 1 match

[42322] doi:10.1038/s41597-022-01625-7 [paper, repository]

Le Petit Prince multilingual naturalistic fMRI corpus.

Journal: Scientific data

Authors' code: jixing-li/lpp_data (no license), chrplr/lpp-paradigm (no license)

Status: code verified, 11 files readable

[42323] doi:10.1038/s41597-022-01645-3 [paper, repository]

Probabilistic atlas for the language network based on precision fMRI data from &gt;800 individuals.

Journal: Scientific data

Authors' code: evlab.mit.edu/funcloc (no license)

Status: code verified

[42324] doi:10.1038/s41598-022-18819-z [paper, data]

Attention rhythmically samples multi-feature objects in working memory.

Journal: Scientific reports

Status: data only, 1 dataset cited

[42325] doi:10.1038/s41598-022-18924-z [paper, repository]

Improved cognitive performance in trace amine-associated receptor 5 (TAAR5) knock-out mice.

Journal: Scientific reports

Authors' code: sibangi/TAAR5_repo (MIT)

Status: code verified, 21 files readable, 2 matches

[42326] doi:10.1038/s41598-022-18950-x [paper, data]

Tumor spheroids accelerate persistently invading cancer cells.

Journal: Scientific reports

Status: data only, 1 dataset cited

[42327] doi:10.1038/s41746-022-00675-w [paper]

Automatic identification of tinnitus malingering based on overt and covert behavioral responses during psychoacoustic testing.

Journal: NPJ digital medicine

Status: code on request

[42328] doi:10.1101/2022.08.27.505518 [paper, data]

LSD-induced increase of Ising temperature and algorithmic complexity of brain dynamics

Journal: bioRxiv (preprint)

Status: data only, 2 datasets cited

[42329] doi:10.1111/joa.13732 [paper, data]

Neuroanatomy of the mekosuchine crocodylian Trilophosuchus rackhami Willis, 1993.

Journal: Journal of anatomy

Status: data only, 3 datasets cited

[42330] doi:10.1128/mbio.01746-22 [paper, repository]

Plasmodium falciparum and TNF-α Differentially Regulate Inflammatory and Barrier Integrity Pathways in Human Brain Endothelial Cells.

Journal: mBio

Authors' code: igordot/sns (MIT)

Status: code verified, 71 files readable, 1 match

[42331] doi:10.1155/2022/2949216 [paper, data]

Logistics Information Traceability Mechanism of Fresh E-Commerce Based on Image Recognition Technology.

Journal: Applied bionics and biomechanics

Status: data only, 1 dataset cited

[42332] doi:10.1155/2022/8615949 [paper, data]

Identification of a Signature for Predicting Prognosis and Immunotherapy Response in Patients with Glioma.

Journal: Journal of oncology

Status: data only, 1 dataset cited

[42333] doi:10.1186/s12576-022-00847-z [paper, data]

Temporal variations in the pattern of breathing: techniques, sources, and applications to translational sciences.

Journal: The journal of physiological sciences : JPS

Status: data only, 1 dataset cited

[42334] doi:10.1186/s12987-022-00358-4 [paper, repository]

Membrane transporters control cerebrospinal fluid formation independently of conventional osmosis to modulate intracranial pressure.

Journal: Fluids and barriers of the CNS

Authors' code: Sorennorge/MacAulayLab-RNAseq1 (no license)

Status: code verified, 15 files readable, 2 matches

[42335] doi:10.1186/s40478-022-01422-8 [paper, data]

Glioblastoma CD105&lt;sup&gt;+&lt;/sup&gt; cells define a SOX2&lt;sup&gt;-&lt;/sup&gt; cancer stem cell-like subpopulation in the pre-invasive niche.

Journal: Acta neuropathologica communications

Status: data only, 1 dataset cited

[42336] doi:10.1212/nxg.0000000000200014 [paper]

Genetic Evidence for Protective Effects of Angiotensin-Converting Enzyme Against Alzheimer Disease But Not Other Neurodegenerative Diseases in European Populations.

Journal: Neurology. Genetics

Status: code on request

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