Every paper, by date: page 190

44,644 papers with a page: 24,189 with their authors' code, 4,955 with code on request, 15,495 with data only. The most recent first, 224 a page. Page 190 of 200: 29 August 2022 to 18 August 2022.

Monday, 29 August 2022 (35 papers, 12 on this page)

[42337] doi:10.1212/nxg.0000000000200022 [paper, data]

Severe Epilepsy and Movement Disorder May Be Early Symptoms of <i>TMEM106B</i>-Related Hypomyelinating Leukodystrophy.

Journal: Neurology. Genetics

Status: data only, 2 datasets cited

[42338] doi:10.1371/journal.pcbi.1010398 [paper, repository]

A simple model of the attentional blink and its modulation by mental training.

Journal: PLoS computational biology

Authors' code: OSF 52rmt (no license)

Status: code verified, 12 files readable, 1 match

[42339] doi:10.3389/fdata.2022.988084 [paper, repository]

Lessons learned: A neuroimaging research center's transition to open and reproducible science.

Journal: Frontiers in big data

Authors' code: kabush/CTER (MIT), kabush/CTER2bids (MIT), kabush/birc-preproc (MIT)

Status: code verified, 72 files readable

[42340] doi:10.3389/fgene.2022.936937 [paper, data]

miR-22-3p as a potential biomarker for coronary artery disease based on integrated bioinformatics analysis.

Journal: Frontiers in genetics

Status: data only, 1 dataset cited

[42341] doi:10.3389/fimmu.2022.945485 [paper, data]

Microglia subtypes show substrate- and time-dependent phagocytosis preferences and phenotype plasticity.

Journal: Frontiers in immunology

Status: data only, 1 dataset cited

[42342] doi:10.3389/fnimg.2022.968363 [paper, repository]

Evaluation and comparison of most prevalent artifact reduction methods for EEG acquired simultaneously with fMRI.

Journal: Frontiers in neuroimaging

Authors' code: OSF 2ey74 (no license)

Status: code verified, 15 files readable, 9 matches

[42343] doi:10.3389/fnmol.2022.955799 [paper, data]

Exercise modulates central and peripheral inflammatory responses and ameliorates methamphetamine-induced anxiety-like symptoms in mice.

Journal: Frontiers in molecular neuroscience

Status: data only, 1 dataset cited

[42344] doi:10.3389/fphar.2022.941522 [paper, data]

Discovering monoacylglycerol lipase inhibitors by a combination of fluorogenic substrate assay and activity-based protein profiling.

Journal: Frontiers in pharmacology

Status: data only, 1 dataset cited

[42345] doi:10.3389/fpsyg.2022.841926 [paper, repository]

EmotionBox: A music-element-driven emotional music generation system based on music psychology.

Journal: Frontiers in psychology

Authors' code: KaitongZheng/EmotionBox (MIT)

Status: code verified, 13 files readable, 4 matches

[42346] doi:10.3390/genes13091558 [paper, data]

Loss of Protein Function Causing Severe Phenotypes of Female-Restricted Wieacker Wolff Syndrome due to a Novel Nonsense Mutation in the <i>ZC4H2</i> Gene.

Journal: Genes

Status: data only, 1 dataset cited

[42347] doi:10.3390/genes13091559 [paper, repository]

Expression of Transcription Factor ZBTB20 in the Adult Primate Neurogenic Niche under Physiological Conditions or after Ischemia.

Journal: Genes

Authors' code: tumrod/cellDetekt (other)

Status: code verified, 3 files readable

[42348] doi:10.7150/thno.74600 [paper, data]

The N⁶-methyladenosine-mediated lncRNA WEE2-AS1 promotes glioblastoma progression by stabilizing RPN2.

Journal: Theranostics

Status: data only, 1 dataset cited

Sunday, 28 August 2022 (5 papers)

[42349] doi:10.1007/s11063-022-11014-1 [paper, data]

Effectiveness of Federated Learning and CNN Ensemble Architectures for Identifying Brain Tumors Using MRI Images.

Journal: Neural processing letters

Status: data only, 1 dataset cited

[42350] doi:10.1016/j.isci.2022.105024 [paper]

Multidimensional encoding of movement and contextual variables by rat globus pallidus neurons during a novel environment exposure task.

Journal: iScience

Status: code on request

[42351] doi:10.1016/j.isci.2022.105028 [paper, repository]

Resolving primary pathomechanisms driving idiopathic-like spinal curvature using a new <i>katnb1</i> scoliosis model.

Journal: iScience

Authors' code: alexdobin/STAR (MIT)

Status: code verified, 331 files readable

[42352] doi:10.1016/j.nicl.2022.103172 [paper, repository]

Speech cortical activation and connectivity in typically developing children and those with listening difficulties.

Journal: NeuroImage. Clinical

Authors' code: OSF qzkh4 (no license)

Status: code verified, 1 file readable

[42353] doi:10.3390/jpm12091396 [paper, data]

Elevated Expression of <i>RGS2</i> May Underlie Reduced Olfaction in COVID-19 Patients.

Journal: Journal of personalized medicine

Status: data only, 1 dataset cited

Saturday, 27 August 2022 (9 papers)

[42354] doi:10.1016/j.csbj.2022.08.039 [paper, repository]

Accurate brain tumor detection using deep convolutional neural network.

Journal: Computational and structural biotechnology journal

Authors' code: saikat15010/Brain-Tumor-Detection (no license)

Status: code verified, 4 files readable, 3 matches

[42355] doi:10.1016/j.nbas.2022.100051 [paper, data]

Hemispheric dissociations in regions supporting auditory sentence comprehension in older adults.

Journal: Aging brain

Status: data only, 1 dataset cited

[42356] doi:10.1016/j.neuroimage.2022.119591 [paper, repository]

Edge-centric analysis of time-varying functional brain networks with applications in autism spectrum disorder.

Journal: NeuroImage

Authors' code: brain-networks/edge-ts (no license)

Status: code verified, 4 files readable, 1 match

[42357] doi:10.1016/j.neuroimage.2022.119593 [paper, repository]

Resolving the mesoscopic missing link: Biophysical modeling of EEG from cortical columns in primates.

Journal: NeuroImage

Authors' code: espenhgn/CSDplotter (GPL-3.0), beaherrera/CSDtoEEG-repo (GPL-3.0)

Status: code verified, 129 files readable, 6 matches

[42358] doi:10.1016/j.neuroimage.2022.119595 [paper, repository]

Mixtures of large-scale dynamic functional brain network modes.

Journal: NeuroImage

Authors' code: OHBA-analysis/osl-dynamics (Apache-2.0)

Status: code verified, 233 files readable, 17 matches

[42359] doi:10.1038/s41398-022-02114-6 [paper, repository]

The neurophysiological effect of NMDA-R antagonism of frontotemporal lobar degeneration is conditional on individual GABA concentration.

Journal: Translational psychiatry

Authors' code: AlistairPerry/FTLDMEGMEM (no license)

Status: code verified, 30 files readable, 7 matches

[42360] doi:10.1186/s11689-022-09456-8 [paper, data]

EEG resting-state functional connectivity: evidence for an imbalance of external/internal information integration in autism.

Journal: Journal of neurodevelopmental disorders

Status: data only, 2 datasets cited

[42361] doi:10.3390/brainsci12091145 [paper, data]

RMTF-Net: Residual Mix Transformer Fusion Net for 2D Brain Tumor Segmentation.

Journal: Brain sciences

Status: data only, 1 dataset cited

[42362] doi:10.3390/e24091199 [paper, data]

Brain Tumor Segmentation Based on Bendlet Transform and Improved Chan-Vese Model.

Journal: Entropy (Basel, Switzerland)

Status: data only, 1 dataset cited

Friday, 26 August 2022 (23 papers)

[42363] doi:10.1002/wsbm.1581 [paper, repository]

Models of the cardiac L-type calcium current: A quantitative review.

Journal: WIREs mechanisms of disease

Authors' code: Zenodo 6653898 (other-open)

Status: code verified, 10 files readable, 1 match

[42364] doi:10.1007/s12021-022-09603-5 [paper, data]

Deep Learning Classification of Treatment Response in Diabetic Painful Neuropathy: A Combined Machine Learning and Magnetic Resonance Neuroimaging Methodological Study.

Journal: Neuroinformatics

Status: data only, 1 dataset cited

[42365] doi:10.1007/s12652-022-04342-6 [paper, data]

A generic optimization and learning framework for Parkinson disease via speech and handwritten records.

Journal: Journal of ambient intelligence and humanized computing

Status: data only, 1 dataset cited

[42366] doi:10.1016/j.cub.2022.08.010 [paper, repository]

Distinct neural representations for prosocial and self-benefiting effort.

Journal: Current biology : CB

Authors' code: rsagroup/rsatoolbox (MIT), OSF tm45q (no license)

Status: code verified, 172 files readable, 15 matches

[42367] doi:10.1016/j.isci.2022.105018 [paper]

Neural dynamics of illusory tactile pulling sensations.

Journal: iScience

Status: code on request

[42368] doi:10.1016/j.isci.2022.105032 [paper]

Hierarchical partner selection shapes rod-cone pathway specificity in the inner retina.

Journal: iScience

Status: code on request

[42369] doi:10.1016/j.nicl.2022.103171 [paper, data]

MRI markers of brain network integrity relate to neurological outcome in postanoxic coma.

Journal: NeuroImage. Clinical

Status: data only, 1 dataset cited

[42370] doi:10.1038/s41380-022-01745-x [paper, data]

A novel bio-inspired strategy to prevent amyloidogenesis and synaptic damage in Alzheimer's disease.

Journal: Molecular psychiatry

Status: data only, 2 datasets cited

[42371] doi:10.1038/s41398-022-02041-6 [paper]

Sex-specific genetic association between psychiatric disorders and cognition, behavior and brain imaging in children and adults.

Journal: Translational psychiatry

Status: code on request

[42372] doi:10.1038/s41598-022-18811-7 [paper, data]

A shared numerical magnitude representation evidenced by the distance effect in frequency-tagging EEG.

Journal: Scientific reports

Status: data only, 1 dataset cited

[42373] doi:10.1073/pnas.2205881119 [paper, repository]

Single-neuron bursts encode pathological oscillations in subcortical nuclei of patients with Parkinson's disease and essential tremor.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: toronto-tnbs/pac_investigation (no license)

Status: code verified, 37 files readable

[42374] doi:10.1155/2022/7743705 [paper, data]

Perspectives on the Molecular Mediators of Oxidative Stress and Antioxidant Strategies in the Context of Neuroprotection and Neurolongevity: An Extensive Review.

Journal: Oxidative medicine and cellular longevity

Status: data only, 1 dataset cited

[42375] doi:10.1186/s12987-022-00363-7 [paper, data]

A transcriptomic analysis of cerebral microvessels reveals the involvement of Notch1 signaling in endothelial mitochondrial-dysfunction-dependent BBB disruption.

Journal: Fluids and barriers of the CNS

Status: data only, 1 dataset cited

[42376] doi:10.1242/jcs.259993 [paper, data]

Proteomic analysis of the actin cortex in interphase and mitosis.

Journal: Journal of cell science

Status: data only, 1 dataset cited

[42377] doi:10.1371/journal.pbio.3001554 [paper, data]

The antimicrobial peptide cathelicidin drives development of experimental autoimmune encephalomyelitis in mice by affecting Th17 differentiation.

Journal: PLoS biology

Status: data only, 1 dataset cited

[42378] doi:10.1371/journal.pcbi.1009937 [paper, repository]

Integrative experimental/computational approach establishes active cellular protrusion as the primary driving force of phagocytic spreading by immune cells.

Journal: PLoS computational biology

Authors' code: emmetfrancis/phagocyticSpreading (no license)

Status: code verified, 21 files readable, 3 matches

[42379] doi:10.1371/journal.pone.0273039 [paper, repository]

Highly scalable maximum likelihood and conjugate Bayesian inference for ERGMs on graph sets with equivalent vertices.

Journal: PloS one

Authors' code: doi:10.7910/dvn/rz0q9c (no license)

Status: code found, still to be checked

[42380] doi:10.3389/fgene.2022.990677 [paper, data]

Comparative transcriptome analysis of brain and gonad reveals reproduction-related miRNAs in the giant prawn, <i>Macrobrachium rosenbergii</i>.

Journal: Frontiers in genetics

Status: data only, 2 datasets cited

[42381] doi:10.3389/fnagi.2022.910988 [paper, data]

Brain region-specific microglial and astrocytic activation in response to systemic lipopolysaccharides exposure.

Journal: Frontiers in aging neuroscience

Status: data only, 6 datasets cited

[42382] doi:10.3389/fncir.2022.834434 [paper, data]

Splitting of the magnetic encephalogram into «brain» and «non-brain» physiological signals based on the joint analysis of frequency-pattern functional tomograms and magnetic resonance images.

Journal: Frontiers in neural circuits

Status: data only, 1 dataset cited

[42383] doi:10.3389/fnimg.2022.940849 [paper, repository]

Using transfer learning for automated microbleed segmentation.

Journal: Frontiers in neuroimaging

Authors' code: vfonov/nist_mni_pipelines (no license)

Status: code verified, 228 files readable, 2 matches

[42384] doi:10.3389/fpsyg.2022.817516 [paper, repository]

Rapid adaptation of predictive models during language comprehension: Aperiodic EEG slope, individual alpha frequency and idea density modulate individual differences in real-time model updating.

Journal: Frontiers in psychology

Authors' code: Zenodo 5621582 (other-open), palday/philistine (BSD-3-Clause), Zenodo 5542701 (other-open), juliastats/mixedmodels.jl (MIT), palday/jellyme4.jl (MIT)

Status: code verified, 182 files readable, 2 matches

[42385] doi:10.3389/fpsyt.2022.999007 [paper, repository]

Genetic identification of tissues and cell types underlying attention-deficit/hyperactivity disorder.

Journal: Frontiers in psychiatry

Authors' code: NathanSkene/EWCE (no license)

Status: code verified, 131 files readable

Thursday, 25 August 2022 (30 papers)

[42386] doi:10.1007/s10489-022-04077-z [paper, data]

A dual alignment-based multi-source domain adaptation framework for motor imagery EEG classification.

Journal: Applied intelligence (Dordrecht, Netherlands)

Status: data only, 2 datasets cited

[42387] doi:10.1016/j.ynirp.2022.100124 [paper, repository]

Frontal midline theta and cross-frequency coupling during short term memory and resting state.

Journal: Neuroimage. Reports

Authors' code: OSF mhd43 (no license)

Status: code verified, 10 files readable, 2 matches

[42388] doi:10.1038/s41467-022-32571-y [paper, repository]

Microengineered devices enable long-term imaging of the ventral nerve cord in behaving adult Drosophila.

Journal: Nature communications

Authors' code: NeLy-EPFL/ofco (MIT), NeLy-EPFL/deepinterpolation (BSD-2-Clause), NeLy-EPFL/Long-Term-Imaging-VNC-Drosophila (Apache-2.0)

Status: code verified, 114 files readable, 13 matches

[42389] doi:10.1038/s41467-022-32685-3 [paper, repository]

An interplay between cellular growth and atypical fusion defines morphogenesis of a modular glial niche in Drosophila.

Journal: Nature communications

Authors' code: Zenodo 6941645 (CC-BY-4.0)

Status: code verified, 1 file readable

[42390] doi:10.1038/s41539-022-00138-7 [paper, repository]

Directed information flow during laparoscopic surgical skill acquisition dissociated skill level and medical simulation technology.

Journal: NPJ science of learning

Authors' code: anilkamat/GC_FLS_PC (GPL-3.0)

Status: code verified, 4 files readable

[42391] doi:10.1038/s41586-022-05246-3 [paper, repository]

Embryo model completes gastrulation to neurulation and organogenesis.

Journal: Nature

Authors' code: swolock/scrublet (MIT), theislab/scanpy (BSD-3-Clause), cole-trapnell-lab.github.io/monocle3 (no license), satijalab/seurat (other), fhlab/scRNAseq_inducedETX (no license), ChengxiangQiu/ETiX_Amadei (no license)

Status: code verified, 268 files readable, 8 matches

[42392] doi:10.1038/s41597-022-01623-9 [paper, repository]

The NIMH intramural healthy volunteer dataset: A comprehensive MEG, MRI, and behavioral resource.

Journal: Scientific data

Authors' code: nih-megcore/hv_protocol (CC0-1.0)

Status: code verified, 25 files readable, 5 matches

[42393] doi:10.1038/s41598-022-18207-7 [paper, repository]

Emergence of sensory attenuation based upon the free-energy principle.

Journal: Scientific reports

Authors' code: h-idei/pvrnn_sa (Apache-2.0)

Status: code verified, 21 files readable, 4 matches

[42394] doi:10.1038/s41598-022-18543-8 [paper, repository]

Resting-state functional connectivity does not predict individual differences in the effects of emotion on memory.

Journal: Scientific reports

Authors' code: OSF untzm (no license), donakand/EmotionalMemory (GPL-3.0)

Status: code verified, 25 files readable, 9 matches

[42395] doi:10.1038/s42003-022-03801-2 [paper, repository]

Developmental depression-to-facilitation shift controls excitation-inhibition balance.

Journal: Communications biology

Authors' code: djia/dev-stp (no license)

Status: code verified, 4 files readable, 2 matches

[42396] doi:10.1088/1741-2552/ac87d0 [paper, data]

Multi-feature computational framework for combined signatures of dementia in underrepresented settings.

Journal: Journal of neural engineering

Status: code on request, 1 dataset cited

[42397] doi:10.1093/braincomms/fcac216 [paper]

In Alzheimer-prone brain regions, metabolism and risk-gene expression are strongly correlated.

Journal: Brain communications

Status: code on request

[42398] doi:10.1101/gr.277125.122 [paper, repository]

Corrigendum: Human primitive brain displays negative mitochondrial-nuclear expression correlation of respiratory genes.

Journal: Genome research

Authors' code: dmishmar/Barshad_2018 (no license)

Status: code verified, 8 files readable

[42399] doi:10.1186/s40478-022-01429-1 [paper, data]

Redefining germline predisposition in children with molecularly characterized ependymoma: a population-based 20-year cohort.

Journal: Acta neuropathologica communications

Status: data only, 1 dataset cited

[42400] doi:10.1371/journal.pcbi.1010382 [paper, repository]

Constructive connectomics: How neuronal axons get from here to there using gene-expression maps derived from their family trees.

Journal: PLoS computational biology

Authors' code: stankerstjens/constructive-connectomics (MIT)

Status: code verified, 63 files readable, 5 matches

[42401] doi:10.1371/journal.pone.0272428 [paper, repository]

Interactome overlap between risk genes of epilepsy and targets of anti-epileptic drugs.

Journal: PloS one

Authors' code: Haoxiang-Qi/Network-Calculator (no license), NathanSkene/EWCE (no license)

Status: code verified, 140 files readable, 4 matches

[42402] doi:10.3389/fendo.2022.960769 [paper, data]

Estrogen differentially regulates transcriptional landscapes of preoptic and arcuate kisspeptin neuron populations.

Journal: Frontiers in endocrinology

Status: data only, 9 datasets cited

[42403] doi:10.3389/fmed.2022.937142 [paper, data]

New, potent, small molecule agonists of tyrosine kinase receptors attenuate dry eye disease.

Journal: Frontiers in medicine

Status: data only, 1 dataset cited

[42404] doi:10.3389/fnana.2022.950650 [paper, repository]

Quantitative myelin-related maps from R1 and T2* ratio images using a single ME-MP2RAGE sequence in 7T MRI.

Journal: Frontiers in neuroanatomy

Authors' code: mjt320/T2Star (GPL-3.0)

Status: code verified, 7 files readable, 1 match

[42405] doi:10.3389/fncom.2022.887633 [paper, repository]

Deep attention super-resolution of brain magnetic resonance images acquired under clinical protocols.

Journal: Frontiers in computational neuroscience

Authors' code: bryanlimy/clinical-super-mri (MIT)

Status: code verified, 31 files readable, 8 matches

[42406] doi:10.3389/fnhum.2022.902192 [paper, data]

Food cue reactivity in successful laparoscopic gastric banding: A sham-deflation-controlled pilot study.

Journal: Frontiers in human neuroscience

Status: data only, 1 dataset cited

[42407] doi:10.3389/fnins.2022.971809 [paper, repository]

Dynamic spectral signatures of mirror movements in the sensorimotor functional connectivity network of patients with Kallmann syndrome.

Journal: Frontiers in neuroscience

Authors' code: trendscenter/gift (no license)

Status: code verified, 1,047 files readable, 6 matches

[42408] doi:10.3389/fphar.2022.882121 [paper, data]

6-Gingerol attenuates subarachnoid hemorrhage-induced early brain injury via GBP2/PI3K/AKT pathway in the rat model.

Journal: Frontiers in pharmacology

Status: data only, 1 dataset cited

[42409] doi:10.3389/fpsyg.2022.945709 [paper, repository]

Musical Activity During Life Is Associated With Multi-Domain Cognitive and Brain Benefits in Older Adults.

Journal: Frontiers in psychology

Authors' code: bioimagesuiteweb/bisweb (Apache-2.0)

Status: code verified, 700 files readable, 3 matches

[42410] doi:10.3390/brainsci12091133 [paper, data]

Does Eye Gaze Uniquely Trigger Spatial Orienting to Socially Relevant Information? A Behavioral and ERP Study.

Journal: Brain sciences

Status: data only, 1 dataset cited

[42411] doi:10.3390/ijms23179648 [paper, data]

Fatty Acid-Binding Proteins: Their Roles in Ischemic Stroke and Potential as Drug Targets.

Journal: International journal of molecular sciences

Status: data only, 1 dataset cited

[42412] doi:10.3390/ijms23179652 [paper]

Downstream Effects of Mutations in <i>SOD1</i> and <i>TARDBP</i> Converge on Gene Expression Impairment in Patient-Derived Motor Neurons.

Journal: International journal of molecular sciences

Status: data only

[42413] doi:10.3390/life12091306 [paper, data]

Dynamics of Dopamine and Other Monoamines Content in Rat Brain after Single Low-Dose Carbon Nuclei Irradiation.

Journal: Life (Basel, Switzerland)

Status: data only, 1 dataset cited

[42414] doi:10.7554/elife.77571 [paper, repository]

Decomposing the role of alpha oscillations during brain maturation.

Journal: eLife

Authors' code: OSF 4nzyk (no license), sdziem/DTIPreprocesingPipeline (no license)

Status: code verified, 30 files readable, 9 matches

[42415] doi:10.7554/elife.78093 [paper, data]

Photoreceptors generate neuronal diversity in their target field through a Hedgehog morphogen gradient in <i>Drosophila</i>.

Journal: eLife

Status: data only, 1 dataset cited

Wednesday, 24 August 2022 (35 papers)

[42416] doi:10.1007/s42761-022-00129-2 [paper, data]

What Parts of Reappraisal Make Us Feel Better? Dissociating the Generation of Reappraisals from Their Implementation.

Journal: Affective science

Status: data only, 1 dataset cited

[42417] doi:10.1016/j.bpsgos.2022.08.003 [paper, repository]

Schizophrenia Polygenic Risk During Typical Development Reflects Multiscale Cortical Organization.

Journal: Biological psychiatry global open science

Authors' code: caseypaquola/DMN (MIT), ThomasYeoLab/CBIG (MIT)

Status: code verified, 2,021 files readable

[42418] doi:10.1016/j.csbj.2022.08.029 [paper, repository]

Define and visualize pathological architectures of human tissues from spatially resolved transcriptomics using deep learning.

Journal: Computational and structural biotechnology journal

Authors' code: OSU-BMBL/RESEPT (MIT)

Status: code verified, 172 files readable, 17 matches

[42419] doi:10.1016/j.isci.2022.104989 [paper]

PRG-1 prevents neonatal stimuli-induced persistent hyperalgesia and memory dysfunction via NSF/Glu/GluR2 signaling.

Journal: iScience

Status: code on request

[42420] doi:10.1016/j.patter.2022.100567 [paper, repository]

Designing optimal convolutional neural network architecture using differential evolution algorithm.

Journal: Patterns (New York, N.Y.)

Authors' code: Zenodo 6567750 (CC-BY-4.0)

Status: code verified, 4 files readable, 6 matches

[42421] doi:10.1038/s41467-022-32555-y [paper, repository]

A neural correlate of perceptual segmentation in macaque middle temporal cortical area.

Journal: Nature communications

Authors' code: clarkam80/mtperceptualsegmentation-dataanalysis (GPL-3.0)

Status: code verified, 9 files readable

[42422] doi:10.1038/s41467-022-32679-1 [paper, repository]

Striatal dopamine dissociates methylphenidate effects on value-based versus surprise-based reversal learning.

Journal: Nature communications

Authors' code: OSF d3h8e (no license)

Status: code verified

[42423] doi:10.1038/s41586-022-05112-2 [paper]

Natural switches in behaviour rapidly modulate hippocampal coding.

Journal: Nature

Status: code on request

[42424] doi:10.1038/s41586-022-05113-1 [paper, repository]

Fos ensembles encode and shape stable spatial maps in the hippocampus.

Journal: Nature

Authors' code: HarveyLab/Acquisition2P_class (MIT), buzsakilab/buzcode (GPL-3.0)

Status: code verified, 2,145 files readable, 7 matches

[42425] doi:10.1038/s41586-022-05118-w [paper, repository]

Brain-phenotype models fail for individuals who defy sample stereotypes.

Journal: Nature

Authors' code: abigailsgreene/modelFailure (no license), bioimagesuiteweb.github.io/webapp (no license)

Status: code verified, 5 files readable, 6 matches

[42426] doi:10.1038/s41597-022-01571-4 [paper, repository]

qMRI-BIDS: An extension to the brain imaging data structure for quantitative magnetic resonance imaging data.

Journal: Scientific data

Authors' code: Zenodo 4299139 (CC-BY-4.0), Zenodo 1476976 (other-open), gilles86/pymp2rage (Apache-2.0)

Status: code verified, 47 files readable, 3 matches

[42427] doi:10.1038/s41598-022-18129-4 [paper, repository]

Evaluating the performance of Bayesian and frequentist approaches for longitudinal modeling: application to Alzheimer's disease.

Journal: Scientific reports

Authors' code: Agnes2/LME-with-a-Bayesian-and-Frequentist-Approaches (no license)

Status: code verified, 5 files readable, 2 matches

[42428] doi:10.1098/rsif.2022.0339 [paper, repository]

Dynamic switching of lateral inhibition spatial patterns.

Journal: Journal of the Royal Society, Interface

Authors' code: Papalopulu-Lab/Hawley2022 (no license), doi:10.6084/m9.figshare.c.6135944 (no license)

Status: code verified, 38 files readable, 14 matches

[42429] doi:10.1098/rspb.2021.2784 [paper, repository]

Divergence in brain size and brain region volumes across wild guppy populations.

Journal: Proceedings. Biological sciences

Authors' code: doi:10.6084/m9.figshare.c.6135618 (no license)

Status: code found, still to be checked

[42430] doi:10.1155/2022/3504279 [paper]

Astrocytic IGF-1 and IGF-1R Orchestrate Mitophagy in Traumatic Brain Injury via Exosomal miR-let-7e.

Journal: Oxidative medicine and cellular longevity

Status: data only

[42431] doi:10.1155/2022/7797094 [paper, data]

Development of Machine Learning and Medical Enabled Multimodal for Segmentation and Classification of Brain Tumor Using MRI Images.

Journal: Computational intelligence and neuroscience

Status: data only, 1 dataset cited

[42432] doi:10.1158/2767-9764.crc-21-0090 [paper, data]

Brain Neural Progenitors are New Predictive Biomarkers for Breast Cancer Hormonotherapy.

Journal: Cancer research communications

Status: data only, 1 dataset cited

[42433] doi:10.1186/s13024-022-00552-w [paper, data]

Microglial TYROBP/DAP12 in Alzheimer's disease: Transduction of physiological and pathological signals across TREM2.

Journal: Molecular neurodegeneration

Status: data only, 2 datasets cited

[42434] doi:10.1186/s13064-022-00163-7 [paper, repository]

Single cell RNA-seq analysis reveals temporally-regulated and quiescence-regulated gene expression in Drosophila larval neuroblasts.

Journal: Neural development

Authors' code: dropbox.com/sh/iilbqlqysgyocbu (no license)

Status: code verified

[42435] doi:10.1186/s13064-022-00164-6 [paper, repository]

A single-cell transcriptomic atlas of complete insect nervous systems across multiple life stages.

Journal: Neural development

Authors' code: histonemark/Brainseq_code (no license)

Status: empty repository, 1 file readable

[42436] doi:10.1186/s13071-022-05405-5 [paper, data]

RNA sequencing reveals dynamic expression of lncRNAs and mRNAs in caprine endometrial epithelial cells induced by Neospora caninum infection.

Journal: Parasites & vectors

Status: data only, 14 datasets cited

[42437] doi:10.1242/dev.200833 [paper, data]

Molecular and cellular architecture of the larval sensory organ in the cnidarian Nematostella vectensis.

Journal: Development (Cambridge, England)

Status: data only, 4 datasets cited

[42438] doi:10.1371/journal.pone.0268881 [paper, repository]

Convolutional neural networks to predict brain tumor grades and Alzheimer's disease with MR spectroscopic imaging data.

Journal: PloS one

Authors' code: chenkonturek/MRS_MRI_libs (MIT)

Status: code verified, 154 files readable, 2 matches

[42439] doi:10.3389/fbioe.2022.936082 [paper, repository]

Brain architecture-based vulnerability to traumatic injury.

Journal: Frontiers in bioengineering and biotechnology

Authors' code: thomasyeolab/cbig (MIT)

Status: code verified, 2,000 files readable

[42440] doi:10.3389/fninf.2022.819198 [paper, repository]

Extending and using anatomical vocabularies in the stimulating peripheral activity to relieve conditions project.

Journal: Frontiers in neuroinformatics

Authors' code: tgbugs/pyontutils (MIT), scicrunch/sparc-curation (MIT), SciGraph/SciGraph (Apache-2.0), obophenotype/uberon (other), Zenodo 4592539 (CC-BY-4.0), open-physiology/apinatomy-models (no license)

Status: code verified, 674 files readable, 5 matches

[42441] doi:10.3389/fnins.2022.946822 [paper, data]

Hunting for the cause: Evidence for prion-like mechanisms in Huntington's disease.

Journal: Frontiers in neuroscience

Status: data only, 5 datasets cited

[42442] doi:10.3389/fphar.2022.893244 [paper]

Yuan-Zhi decoction in the treatment of Alzheimer's disease: An integrated approach based on chemical profiling, network pharmacology, molecular docking and experimental evaluation.

Journal: Frontiers in pharmacology

Status: data only

[42443] doi:10.3389/fphar.2022.927611 [paper, data]

Puerarin: A protective drug against ischemia-reperfusion injury.

Journal: Frontiers in pharmacology

Status: data only, 2 datasets cited

[42444] doi:10.3390/biomedicines10092068 [paper, data]

A Human Stem Cell-Derived Neurosensory-Epithelial Circuitry on a Chip to Model Herpes Simplex Virus Reactivation.

Journal: Biomedicines

Status: data only, 1 dataset cited

[42445] doi:10.3390/cells11172632 [paper, data]

Identifying Disease Signatures in the Spinocerebellar Ataxia Type 1 Mouse Cortex.

Journal: Cells

Status: data only, 1 dataset cited

[42446] doi:10.3390/diagnostics12092055 [paper, repository]

Automatic Segmentation and Quantitative Assessment of Stroke Lesions on MR Images.

Journal: Diagnostics (Basel, Switzerland)

Authors' code: SatwantKumar/3D-unet (no license)

Status: code verified, 1 file readable

[42447] doi:10.3390/ijms23179580 [paper, repository]

Information Theory as an Experimental Tool for Integrating Disparate Biophysical Signaling Modules.

Journal: International journal of molecular sciences

Authors' code: ELIFE-ASU/caim (MIT)

Status: code verified, 20 files readable

[42448] doi:10.3390/insects13090763 [paper, repository]

Foreleg Transcriptomic Analysis of the Chemosensory Gene Families in <i>Plagiodera versicolora</i> (Coleoptera: Chrysomelidae).

Journal: Insects

Authors' code: trinityrnaseq/trinityrnaseq (BSD-3-Clause)

Status: code verified, 482 files readable

[42449] doi:10.3390/jpm12091367 [paper, repository]

Determining the Individual Theta Frequency for Associative Memory Targeted Personalized Transcranial Brain Stimulation.

Journal: Journal of personalized medicine

Authors' code: OSF be8df (no license)

Status: empty repository

[42450] doi:10.7554/elife.72435 [paper, repository]

Developmental stage-specific spontaneous activity contributes to callosal axon projections.

Journal: eLife

Authors' code: hagikent/CallosalRescue (no license)

Status: code verified, 2 files readable, 1 match

Tuesday, 23 August 2022 (27 papers)

[42451] doi:10.1002/hbm.26049 [paper, data]

When action prediction grows old: An fMRI study.

Journal: Human brain mapping

Status: data only, 1 dataset cited

[42452] doi:10.1016/j.mex.2022.101825 [paper, repository]

Bayesian inference of molecular kinetic parameters from astrocyte calcium imaging data.

Journal: MethodsX

Authors' code: mbb-team/vba-toolbox (GPL-3.0)

Status: code verified, 576 files readable, 5 matches

[42453] doi:10.1016/j.reth.2022.07.003 [paper, data]

Mesenchymal stem cell therapy: A review of clinical trials for multiple sclerosis.

Journal: Regenerative therapy

Status: data only, 1 dataset cited

[42454] doi:10.1038/s41537-022-00272-6 [paper, data]

Glutamine and GABA alterations in cingulate cortex may underlie alcohol drinking in a rat model of co-occurring alcohol use disorder and schizophrenia: an 1H-MRS study.

Journal: Schizophrenia (Heidelberg, Germany)

Status: data only, 1 dataset cited

[42455] doi:10.1038/s41597-022-01624-8 [paper, repository]

A multi-scale probabilistic atlas of the human connectome.

Journal: Scientific data

Authors' code: connectomicslab/probconnatlas (Apache-2.0)

Status: code verified, 5 files readable, 6 matches

[42456] doi:10.1038/s41597-022-01644-4 [paper, repository]

An fMRI dataset for whole-body somatotopic mapping in humans.

Journal: Scientific data

Authors' code: BNUCNL/WholebodySomatotopicMapping (MIT), edickie/ciftify (MIT)

Status: code verified, 83 files readable, 12 matches

[42457] doi:10.1038/s41598-022-18363-w [paper, data]

Brief exposure of neuronal cells to levels of SCFAs observed in human systemic circulation impair lipid metabolism resulting in apoptosis.

Journal: Scientific reports

Status: data only, 1 dataset cited

[42458] doi:10.1038/s41598-022-18502-3 [paper, data]

EEG temporal-spatial transformer for person identification.

Journal: Scientific reports

Status: data only, 1 dataset cited

[42459] doi:10.1073/pnas.2202764119 [paper, repository]

Genome-wide analyses of individual differences in quantitatively assessed reading- and language-related skills in up to 34,000 people.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: gitlab.gwdg.de/else.eising/genlang_quantitative_trait_gwasma (no license)

Status: code verified, 75 files readable, 7 matches

[42460] doi:10.1109/jtehm.2022.3201167 [paper, repository]

Ensemble Learning Using Individual Neonatal Data for Seizure Detection.

Journal: IEEE journal of translational engineering in health and medicine

Authors' code: anaborovac (no license)

Status: code verified

[42461] doi:10.1177/0271678x221112278 [paper, repository]

Disturbed microcirculation and hyperaemic response in a murine model of systemic inflammation.

Journal: Journal of cerebral blood flow and metabolism : official journal of the International Society of Cerebral Blood Flow and Metabolism

Authors' code: OSF me6hf (no license)

Status: empty repository

[42462] doi:10.1186/s12915-022-01385-1 [paper, data]

A developmental role for the chromatin-regulating CoREST complex in the cnidarian Nematostella vectensis.

Journal: BMC biology

Status: data only, 1 dataset cited

[42463] doi:10.1186/s40168-022-01302-2 [paper, data]

Gut-derived metabolites influence neurodevelopmental gene expression and Wnt signaling events in a germ-free zebrafish model.

Journal: Microbiome

Status: data only, 2 datasets cited

[42464] doi:10.1371/journal.pcbi.1010376 [paper, data]

Subunit promotion energies for channel opening in heterotetrameric olfactory CNG channels.

Journal: PLoS computational biology

Status: data only, 1 dataset cited

[42465] doi:10.18632/aging.204223 [paper, repository]

Distinct microglia alternative splicing in Alzheimer's disease.

Journal: Aging

Authors' code: tjhwangxiong/AD-GSE132177-Alternative-Splicing-pipeline (no license)

Status: empty repository, 1 file readable

[42466] doi:10.2196/38689 [paper, data]

Detection of Low Back Physiotherapy Exercises With Inertial Sensors and Machine Learning: Algorithm Development and Validation.

Journal: JMIR rehabilitation and assistive technologies

Status: data only, 1 dataset cited

[42467] doi:10.3389/fcell.2022.948331 [paper]

The transcription factor <i>Zfp503</i> promotes the D1 MSN identity and represses the D2 MSN identity.

Journal: Frontiers in cell and developmental biology

Status: data only

[42468] doi:10.3389/fncel.2022.897564 [paper, data]

The SARS-CoV-2 envelope protein disrupts barrier function in an <i>in vitro</i> human blood-brain barrier model.

Journal: Frontiers in cellular neuroscience

Status: data only, 1 dataset cited

[42469] doi:10.3389/fncom.2022.980613 [paper, repository]

Combining backpropagation with Equilibrium Propagation to improve an Actor-Critic reinforcement learning framework.

Journal: Frontiers in computational neuroscience

Authors' code: ykubo82/HybridRL (no license)

Status: code verified, 4 files readable, 1 match

[42470] doi:10.3389/fneur.2022.960012 [paper, repository]

Expert validation of prediction models for a clinical decision-support system in audiology.

Journal: Frontiers in neurology

Authors' code: Zenodo 6817974 (other-open), mabu19/paper-expert-validation (GPL-3.0)

Status: code verified, 30 files readable, 2 matches

[42471] doi:10.3389/fnmol.2022.967472 [paper, data]

Analysis of neuronal injury transcriptional response identifies CTCF and YY1 as co-operating factors regulating axon regeneration.

Journal: Frontiers in molecular neuroscience

Status: data only, 1 dataset cited

[42472] doi:10.3389/fpsyt.2022.980315 [paper, data]

Integrated co-expression network analysis uncovers novel tissue-specific genes in major depressive disorder and bipolar disorder.

Journal: Frontiers in psychiatry

Status: data only, 1 dataset cited

[42473] doi:10.3390/biology11091251 [paper, data]

The Sheep as a Large Animal Model for the Investigation and Treatment of Human Disorders.

Journal: Biology

Status: data only, 11 datasets cited

[42474] doi:10.3390/ijms23179540 [paper, data]

Dysfunctional Glucose Metabolism in Alzheimer's Disease Onset and Potential Pharmacological Interventions.

Journal: International journal of molecular sciences

Status: data only, 3 datasets cited

[42475] doi:10.3390/metabo12090774 [paper, data]

Multi-Omic Admission-Based Prognostic Biomarkers Identified by Machine Learning Algorithms Predict Patient Recovery and 30-Day Survival in Trauma Patients.

Journal: Metabolites

Status: data only, 2 datasets cited

[42476] doi:10.3390/nu14173451 [paper, data]

The Brain's Microvascular Response to High Glycemia and to the Inhibition of Soluble Epoxide Hydrolase Is Sexually Dimorphic.

Journal: Nutrients

Status: data only, 1 dataset cited

[42477] doi:10.7554/elife.74314 [paper, repository]

BehaviorDEPOT is a simple, flexible tool for automated behavioral detection based on markerless pose tracking.

Journal: eLife

Authors' code: denardolab/behaviordepot (GPL-3.0), aharoni-lab/minicam (no license)

Status: code verified, 107 files readable, 15 matches

Monday, 22 August 2022 (36 papers)

[42478] doi:10.1002/alz.12760 [paper, repository]

CRISPR/Cas9 screen in human iPSC-derived cortical neurons identifies NEK6 as a novel disease modifier of C9orf72 poly(PR) toxicity.

Journal: Alzheimer's & dementia : the journal of the Alzheimer's Association

Authors' code: emc2cube/Bioinformatics (EUPL-1.2)

Status: code verified, 10 files readable, 1 match

[42479] doi:10.1007/s00429-022-02546-2 [paper, repository]

Multimodal tract-based MRI metrics outperform whole brain markers in determining cognitive impact of small vessel disease-related brain injury.

Journal: Brain structure & function

Authors' code: delucaal/MRIToolkit (LGPL-3.0)

Status: code verified, 218 files readable, 4 matches

[42480] doi:10.1007/s00787-022-02068-6 [paper, repository]

Aberrant brain dynamics and spectral power in children with ADHD and its subtypes.

Journal: European child & adolescent psychiatry

Authors' code: trendscenter.org/software/eegift (no license)

Status: code verified

[42481] doi:10.1016/j.crmeth.2022.100274 [paper]

Cellular barcoding of protozoan pathogens reveals the within-host population dynamics of &lt;i&gt;Toxoplasma gondii&lt;/i&gt; host colonization.

Journal: Cell reports methods

Status: code on request

[42482] doi:10.1016/j.crmeth.2022.100276 [paper]

A genetic tool for the longitudinal study of a subset of post-inflammatory reactive astrocytes.

Journal: Cell reports methods

Status: code on request

[42483] doi:10.1016/j.csbj.2022.08.007 [paper, data]

Identification of mild cognitive impairment subtypes predicting conversion to Alzheimer's disease using multimodal data.

Journal: Computational and structural biotechnology journal

Status: data only, 1 dataset cited

[42484] doi:10.1016/j.neuron.2022.07.019 [paper, repository]

Decision formation in parietal cortex transcends a fixed frame of reference.

Journal: Neuron

Authors' code: arielzylberberg/RandomDotMotion_Psychtoolbox (no license)

Status: code verified, 40 files readable, 2 matches

[42485] doi:10.1016/s2666-7568(22)00167-2 [paper, repository]

Life course, genetic, and neuropathological associations with brain age in the 1946 British Birth Cohort: a population-based study.

Journal: The lancet. Healthy longevity

Authors' code: aaronwagen/insight46-brainage (GPL-3.0)

Status: code verified, 3 files readable, 3 matches

[42486] doi:10.1038/s41467-022-32513-8 [paper, repository]

Derivation and utility of schizophrenia polygenic risk associated multimodal MRI frontotemporal network.

Journal: Nature communications

Authors' code: trendscenter.org/software/fit (no license)

Status: code verified

[42487] doi:10.1038/s41467-022-32550-3 [paper, repository]

Generalization in quantum machine learning from few training data.

Journal: Nature communications

Authors' code: BQSKit/qfactor (BSD-3-Clause)

Status: code verified, 60 files readable

[42488] doi:10.1038/s41467-022-32595-4 [paper, repository]

Population-based tract-to-region connectome of the human brain and its hierarchical topology.

Journal: Nature communications

Authors' code: brain.labsolver.org (no license), frankyeh/DSI-Studio (CC-BY-NC-4.0), Zenodo 4978980 (no license)

Status: code verified, 97 files readable, 2 matches

[42489] doi:10.1038/s41467-022-32619-z [paper, repository]

Epigenome-wide association study of human frontal cortex identifies differential methylation in Lewy body pathology.

Journal: Nature communications

Authors' code: lpihlstrom/projects (no license), Zenodo 6912024 (other-open)

Status: code verified, 16 files readable, 6 matches

[42490] doi:10.1038/s41559-022-01840-w [paper, repository]

The gut microbiota affects the social network of honeybees.

Journal: Nature ecology & evolution

Authors' code: formicidae-tracker (no license), JoanitoLiberti/The-gut-microbiota-affects-the-social-network-of-honeybees (CC0-1.0)

Status: code verified, 2 files readable

[42491] doi:10.1038/s41598-022-18237-1 [paper, repository]

Personality similarity predicts synchronous neural responses in fMRI and EEG data.

Journal: Scientific reports

Authors' code: OSF ycde9 (no license)

Status: code verified, 10 files readable, 9 matches

[42492] doi:10.1038/s42003-022-03727-9 [paper, repository]

Brainprints: identifying individuals from magnetoencephalograms.

Journal: Communications biology

Authors' code: brainML/brainprint (no license)

Status: code verified, 4 files readable, 2 matches

[42493] doi:10.1073/pnas.2116681119 [paper, repository]

Signatures of adaptive evolution in platyrrhine primate genomes.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: Zenodo 5225106 (CC-BY-4.0)

Status: empty repository

[42494] doi:10.1073/pnas.2205425119 [paper, data]

A partnership between the lipid scramblase XK and the lipid transfer protein VPS13A at the plasma membrane.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 2 datasets cited

[42495] doi:10.1073/pnas.2208457119 [paper, data]

Selective inhibitors of SARM1 targeting an allosteric cysteine in the autoregulatory ARM domain.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 1 dataset cited

[42496] doi:10.1073/pnas.2210176119 [paper, repository]

Nucleotide excision repair removes thymidine analog 5-ethynyl-2'-deoxyuridine from the mammalian genome.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: yanyanyangunc/dna-damage-repair-circadian-clock (no license)

Status: code verified, 10 files readable, 1 match

[42497] doi:10.1371/journal.pone.0270696 [paper, repository]

The Portiloop: A deep learning-based open science tool for closed-loop brain stimulation.

Journal: PloS one

Authors' code: Portiloop (no license)

Status: code verified

[42498] doi:10.1371/journal.ppat.1010728 [paper, repository]

Analysis of non-human primate models for evaluating prion disease therapeutic efficacy.

Journal: PLoS pathogens

Authors' code: ericminikel/nhp_models (CC-BY-4.0)

Status: code verified, 6 files readable, 2 matches

[42499] doi:10.15252/embr.202153813 [paper, data]

Lint-O cooperates with L(3)mbt in target gene suppression to maintain homeostasis in fly ovary and brain.

Journal: EMBO reports

Status: data only, 1 dataset cited

[42500] doi:10.18632/aging.204237 [paper, data]

Bridging cognition and action: executive functioning mediates the relationship between white matter fiber density and complex motor abilities in older adults.

Journal: Aging

Status: data only, 1 dataset cited

[42501] doi:10.3389/fgene.2022.942491 [paper, repository]

AttnTAP: A Dual-input Framework Incorporating the Attention Mechanism for Accurately Predicting TCR-peptide Binding.

Journal: Frontiers in genetics

Authors' code: pmoris/ImRex (MIT), jiangBiolab/DLpTCR (other)

Status: code verified, 137 files readable, 2 matches

[42502] doi:10.3389/fgene.2022.968598 [paper, data]

Development and validation of immune-based biomarkers and deep learning models for Alzheimer's disease.

Journal: Frontiers in genetics

Status: data only, 1 dataset cited

[42503] doi:10.3389/fgene.2022.977968 [paper, repository]

Clustering CITE-seq data with a canonical correlation-based deep learning method.

Journal: Frontiers in genetics

Authors' code: ddb-qiwang/scCTClust-torch (no license)

Status: code verified, 16 files readable, 2 matches

[42504] doi:10.3389/fnagi.2022.878276 [paper, data]

Repurposing food molecules as a potential BACE1 inhibitor for Alzheimer's disease.

Journal: Frontiers in aging neuroscience

Status: data only, 1 dataset cited

[42505] doi:10.3389/fnhum.2022.904545 [paper, data]

The relationship between fat mass and obesity associated gene polymorphism rs9939609 and resting cerebral blood flow in a midlife sample with overweight and obesity.

Journal: Frontiers in human neuroscience

Status: data only, 1 dataset cited

[42506] doi:10.3389/fnhum.2022.965602 [paper, data]

Multimodal brain features at 3 years of age and their relationship with pre-reading measures 1 year later.

Journal: Frontiers in human neuroscience

Status: data only, 1 dataset cited

[42507] doi:10.3389/fnins.2022.865897 [paper, repository]

A surrogate gradient spiking baseline for speech command recognition.

Journal: Frontiers in neuroscience

Authors' code: idiap/sparch (BSD)

Status: code verified, 14 files readable, 13 matches

[42508] doi:10.3389/fphys.2022.921942 [paper, data]

A High-Fat Diet Disrupts Nerve Lipids and Mitochondrial Function in Murine Models of Neuropathy.

Journal: Frontiers in physiology

Status: data only, 1 dataset cited

[42509] doi:10.3390/s22166312 [paper, repository]

Database and AI Diagnostic Tools Improve Understanding of Lung Damage, Correlation of Pulmonary Disease and Brain Damage in COVID-19.

Journal: Sensors (Basel, Switzerland)

Authors' code: kaggle.com/code/shivamb (no license)

Status: dead link

[42510] doi:10.7554/elife.77594 [paper, repository]

Rate and oscillatory switching dynamics of a multilayer visual microcircuit model.

Journal: eLife

Authors' code: supp:PMC9395191/elife-77594-code1.zip (no license), supp:PMC9395191/elife-77594-code2.zip (no license)

Status: empty repository

[42511] doi:10.7554/elife.77924 [paper, repository]

Botulinum neurotoxin accurately separates tonic vs. phasic transmission and reveals heterosynaptic plasticity rules in <i>Drosophila</i>.

Journal: eLife

Authors' code: supp:PMC9439677/elife-77924-code1.zip (no license)

Status: code verified, 1 file readable

[42512] doi:10.7554/elife.79031 [paper, repository]

Experience-driven rate modulation is reinstated during hippocampal replay.

Journal: eLife

Authors' code: bendor-lab/Elife_Tirole_Huelin_Gorriz_2022 (CC0-1.0)

Status: code verified, 132 files readable, 23 matches

[42513] doi:10.7554/elife.80747 [paper, repository]

Epac2 in midbrain dopamine neurons contributes to cocaine reinforcement via enhancement of dopamine release.

Journal: eLife

Authors' code: xiaojieliu17/Fiber-photometry (GPL-2.0)

Status: code verified, 5 files readable

Sunday, 21 August 2022 (2 papers)

[42514] doi:10.1002/advs.202200615 [paper, data]

Multiomic Analysis of Neurons with Divergent Projection Patterns Identifies Novel Regulators of Axon Pathfinding.

Journal: Advanced science (Weinheim, Baden-Wurttemberg, Germany)

Status: data only, 1 dataset cited

[42515] doi:10.3390/s22166283 [paper, data]

Poincaré Plot Nonextensive Distribution Entropy: A New Method for Electroencephalography (EEG) Time Series.

Journal: Sensors (Basel, Switzerland)

Status: data only, 1 dataset cited

Saturday, 20 August 2022 (13 papers)

[42516] doi:10.1007/s00221-022-06442-3 [paper, repository]

Self-motion perception without sensory motion.

Journal: Experimental brain research

Authors' code: OSF q7wux (no license)

Status: code verified, 5 files readable, 1 match

[42517] doi:10.1016/j.bpsc.2022.08.005 [paper, repository]

Functional Brain Connectivity Prior to the COVID-19 Outbreak Moderates the Effects of Coping and Perceived Stress on Mental Health Changes: A First Year of COVID-19 Pandemic Follow-up Study.

Journal: Biological psychiatry. Cognitive neuroscience and neuroimaging

Authors' code: thomasyeolab/cbig (MIT)

Status: code verified, 2,000 files readable

[42518] doi:10.1016/j.crneur.2022.100052 [paper, data]

Investigating effortful speech perception using fNIRS and pupillometry measures.

Journal: Current research in neurobiology

Status: data only, 1 dataset cited

[42519] doi:10.1016/j.isci.2022.104987 [paper, data]

The glymphatic system: Current understanding and modeling.

Journal: iScience

Status: data only, 1 dataset cited

[42520] doi:10.1038/s41398-022-02071-0 [paper, data]

Schizophrenia-associated differential DNA methylation in brain is distributed across the genome and annotated to MAD1L1, a locus at which DNA methylation and transcription phenotypes share genetic variation with schizophrenia risk.

Journal: Translational psychiatry

Status: data only, 4 datasets cited

[42521] doi:10.1038/s41467-022-32644-y [paper, repository]

Mapping effective connectivity of human amygdala subdivisions with intracranial stimulation.

Journal: Nature communications

Authors' code: hiroyukioya/Amygdala-Network (no license)

Status: code verified, 11 files readable, 7 matches

[42522] doi:10.1038/s41597-022-01524-x [paper, repository]

EPIC: Annotated epileptic EEG independent components for artifact reduction.

Journal: Scientific data

Authors' code: Zenodo 6620655 (CC-BY-4.0)

Status: code verified, 13 files readable, 5 matches

[42523] doi:10.1038/s41598-022-18173-0 [paper, data]

Evaluation of a hybrid pipeline for automated segmentation of solid lesions based on mathematical algorithms and deep learning.

Journal: Scientific reports

Status: data only, 1 dataset cited

[42524] doi:10.1038/s41746-022-00666-x [paper, repository]

Generation of realistic synthetic data using Multimodal Neural Ordinary Differential Equations.

Journal: NPJ digital medicine

Authors' code: philippwendland/MultiNODEs (MIT)

Status: code verified, 17 files readable, 1 match

[42525] doi:10.1093/braincomms/fcac196 [paper, data]

Cytokine dynamics and targeted immunotherapies in autoimmune encephalitis.

Journal: Brain communications

Status: data only, 5 datasets cited

[42526] doi:10.1093/braincomms/fcac213 [paper, repository]

Preoperative brain connectome predicts postoperative changes in processing speed in moyamoya disease.

Journal: Brain communications

Authors' code: mengxiagao/neuroimage2020 (GPL-3.0)

Status: code verified, 10 files readable, 2 matches

[42527] doi:10.3390/genes13081488 [paper, repository]

Prediction of Synaptically Localized RNAs in Human Neurons Using Developmental Brain Gene Expression Data.

Journal: Genes

Authors' code: BioDataLearning/PredSynRNA (no license)

Status: code verified, 4 files readable, 6 matches

[42528] doi:10.3390/ijms23169392 [paper, repository]

Multi-Omic Investigations of a 17-19 Translocation Links &lt;i&gt;MINK1&lt;/i&gt; Disruption to Autism, Epilepsy and Osteoporosis.

Journal: International journal of molecular sciences

Authors' code: J35P312/smap2vcf (MIT)

Status: code verified, 3 files readable

Friday, 19 August 2022 (23 papers)

[42529] doi:10.1007/s12264-022-00931-9 [paper, repository]

Dendritic Morphology Affects the Velocity and Amplitude of Back-propagating Action Potentials.

Journal: Neuroscience bulletin

Authors' code: modeldb:267417 (no license)

Status: code found, still to be checked

[42530] doi:10.1007/s12311-022-01453-w [paper, data]

A Review on the Clinical Diagnosis of Multiple System Atrophy.

Journal: Cerebellum (London, England)

Status: data only, 2 datasets cited

[42531] doi:10.1016/j.cmet.2022.07.014 [paper, repository]

Warburg-like metabolic transformation underlies neuronal degeneration in sporadic Alzheimer's disease.

Journal: Cell metabolism

Authors' code: alexdobin/STAR (MIT)

Status: code verified, 331 files readable

[42532] doi:10.1016/j.csbj.2022.08.037 [paper]

Brain transcriptomic profiling reveals common alterations across neurodegenerative and psychiatric disorders.

Journal: Computational and structural biotechnology journal

Status: data only

[42533] doi:10.1016/j.dcn.2022.101148 [paper, repository]

Somatosensory prediction in the premature neonate brain.

Journal: Developmental cognitive neuroscience

Authors' code: gitlab.ecole.ensicaen.fr/rclouard/tiserva (no license)

Status: code found, still to be checked

[42534] doi:10.1021/acsomega.2c04188 [paper, data]

Deciphering the Heterogeneity of the Internal Environment of Hippocampal Neurons during Maturation by Raman Spectroscopy.

Journal: ACS omega

Status: data only, 1 dataset cited

[42535] doi:10.1038/s41467-022-32500-z [paper, data]

Ferritin-mediated iron detoxification promotes hypothermia survival in Caenorhabditis elegans and murine neurons.

Journal: Nature communications

Status: data only, 1 dataset cited

[42536] doi:10.1038/s41467-022-32512-9 [paper, data]

Socially meaningful visual context either enhances or inhibits vocalisation processing in the macaque brain.

Journal: Nature communications

Status: code on request, 1 dataset cited

[42537] doi:10.1038/s42003-022-03756-4 [paper, repository]

Analysis of individual differences in neurofeedback training illuminates successful self-regulation of the dopaminergic midbrain.

Journal: Communications biology

Authors' code: lydiatgit/NFLearning_SNVTA_PublicRepo (GPL-3.0), Zenodo 6772232 (other-open)

Status: code verified, 54 files readable, 3 matches

[42538] doi:10.1038/s42003-022-03784-0 [paper]

Long-term microglial phase-specific dynamics during single vessel occlusion and recanalization.

Journal: Communications biology

Status: code on request

[42539] doi:10.1038/s42003-022-03800-3 [paper, repository]

Single-cell transcriptomics and cell-specific proteomics reveals molecular signatures of sleep.

Journal: Communications biology

Authors' code: Zenodo 22731785 (CC-BY-4.0), Zenodo 22731786 (CC-BY-4.0)

Status: code verified, 14 files readable, 4 matches

[42540] doi:10.1101/2022.08.18.504278 [paper, repository]

Quantifying decision-making in dynamic, continuously evolving environments

Journal: bioRxiv (preprint)

Authors' code: CCNHuntLab/ruesseler-eeg-analysis (MIT)

Status: code verified, 112 files readable

[42541] doi:10.1111/acel.13689 [paper, repository]

Quantification of noradrenergic-, dopaminergic-, and tectal-neurons during aging in the short-lived killifish Nothobranchius furzeri.

Journal: Aging cell

Authors' code: data.mendeley.com/datasets/4njyjn4s86 (no license)

Status: code verified

[42542] doi:10.1126/sciadv.abj3236 [paper, data]

Partitioning of ribonucleoprotein complexes from the cellular actin cortex.

Journal: Science advances

Status: data only, 1 dataset cited

[42543] doi:10.1126/sciadv.abn9134 [paper, data]

Natural locus coeruleus dynamics during feeding.

Journal: Science advances

Status: data only, 1 dataset cited

[42544] doi:10.1177/26331055221120252 [paper, data]

The Fly Blood-Brain Barrier Fights Against Nutritional Stress.

Journal: Neuroscience insights

Status: data only, 2 datasets cited

[42545] doi:10.1186/s40478-022-01427-3 [paper, data]

Widespread retina and optic nerve neuroinflammation in enucleated eyes from glaucoma patients.

Journal: Acta neuropathologica communications

Status: data only, 9 datasets cited

[42546] doi:10.3389/fmolb.2022.955753 [paper, data]

Transcriptome changes in DM1 patients' tissues are governed by the RNA interference pathway.

Journal: Frontiers in molecular biosciences

Status: data only, 1 dataset cited

[42547] doi:10.3390/brainsci12081101 [paper, data]

High-Level Visual Encoding Model Framework with Hierarchical Ventral Stream-Optimized Neural Networks.

Journal: Brain sciences

Status: data only, 1 dataset cited

[42548] doi:10.3390/brainsci12081106 [paper, repository]

Dynamic Functional Connectivity of Emotion Processing in Beta Band with Naturalistic Emotion Stimuli.

Journal: Brain sciences

Authors' code: OSF gzqj3 (no license), OSF q4jvh (no license)

Status: code found, still to be checked

[42549] doi:10.3390/jpm12081330 [paper, repository]

Selecting Genetic Variants and Interactions Associated with Amyotrophic Lateral Sclerosis: A Group LASSO Approach.

Journal: Journal of personalized medicine

Authors' code: Hellengeremias/two-step_Group_LASSO_analysis (no license)

Status: code verified, 3 files readable, 1 match

[42550] doi:10.3390/metabo12080764 [paper, data]

Impact of Maternal Obesity on the Gestational Metabolome and Infant Metabolome, Brain, and Behavioral Development in Rhesus Macaques.

Journal: Metabolites

Status: data only, 1 dataset cited

[42551] doi:10.3758/s13415-022-01029-5 [paper, data]

EEG evidence that morally relevant autobiographical memories can be suppressed.

Journal: Cognitive, affective & behavioral neuroscience

Status: data only, 1 dataset cited

Thursday, 18 August 2022 (31 papers, 9 on this page)

[42552] doi:10.1002/hbm.26041 [paper]

Risk-taking in the human brain: An activation likelihood estimation meta-analysis of the balloon analog risk task (BART).

Journal: Human brain mapping

Status: code on request

[42553] doi:10.1002/hbm.26046 [paper, repository]

Cortical depth profiles of auditory and visual 7 T functional MRI responses in human superior temporal areas.

Journal: Human brain mapping

Authors' code: klankinen/7T-feedforward-feedback (no license)

Status: code verified, 2 files readable, 3 matches

[42554] doi:10.1007/s12021-022-09597-0 [paper, repository]

Towards Automated Brain Aneurysm Detection in TOF-MRA: Open Data, Weak Labels, and Anatomical Knowledge.

Journal: Neuroinformatics

Authors' code: connectomicslab/Aneurysm_Detection (Apache-2.0)

Status: code verified, 15 files readable, 11 matches

[42555] doi:10.1016/j.cell.2022.07.013 [paper]

Sustained deep-tissue voltage recording using a fast indicator evolved for two-photon microscopy.

Journal: Cell

Status: code on request

[42556] doi:10.1016/j.isci.2022.104984 [paper]

Binocular visual experience drives the maturation of response variability and reliability in the visual cortex.

Journal: iScience

Status: code on request

[42557] doi:10.1016/j.isci.2022.104985 [paper, repository]

Genetic polymorphisms in <i>COMT</i> and <i>BDNF</i> influence synchronization dynamics of human neuronal oscillations.

Journal: iScience

Authors' code: palvalab/RS-Gen (no license)

Status: code verified, 10 files readable, 6 matches

[42558] doi:10.1016/j.stemcr.2022.07.011 [paper, data]

Human tau mutations in cerebral organoids induce a progressive dyshomeostasis of cholesterol.

Journal: Stem cell reports

Status: data only, 1 dataset cited

[42559] doi:10.1016/j.xpro.2022.101625 [paper, repository]

Transcriptional profiling of mouse projection neurons with VECTORseq.

Journal: STAR protocols

Authors' code: vic-cheung/vectorseq (MIT), Zenodo 5703724 (MIT), theislab/scanpy (BSD-3-Clause), swolock/scrublet (MIT)

Status: code verified, 202 files readable, 23 matches

[42560] doi:10.1016/j.xpro.2022.101628 [paper, data]

Derivation and culturing of neural stem cells from human embryonic brain tissue.

Journal: STAR protocols

Status: data only, 1 dataset cited

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