Every paper, by date: page 191

44,644 papers with a page: 24,189 with their authors' code, 4,955 with code on request, 15,495 with data only. The most recent first, 224 a page. Page 191 of 200: 18 August 2022 to 9 August 2022.

Thursday, 18 August 2022 (31 papers, 22 on this page)

[42561] doi:10.1038/s12276-022-00828-7 [paper, repository]

Development of a spontaneous pain indicator based on brain cellular calcium using deep learning.

Journal: Experimental & molecular medicine

Authors' code: KHUSKlab/paindecoding (no license)

Status: code verified, 12 files readable, 2 matches

[42562] doi:10.1038/s41377-022-00945-y [paper]

A multichannel optical computing architecture for advanced machine vision.

Journal: Light, science & applications

Status: code on request

[42563] doi:10.1038/s41419-022-05127-7 [paper, data]

Whole transcriptome and proteome analyses identify potential targets and mechanisms underlying tumor treating fields against glioblastoma.

Journal: Cell death & disease

Status: data only, 5 datasets cited

[42564] doi:10.1038/s41467-022-32475-x [paper, repository]

Cross-tissue analysis of blood and brain epigenome-wide association studies in Alzheimer's disease.

Journal: Nature communications

Authors' code: TransBioInfoLab/coMethDMR (no license), TransBioInfoLab/AD-meta-analysis-blood (no license), Zenodo 6787981 (other-open)

Status: code verified, 133 files readable, 21 matches

[42565] doi:10.1038/s41531-022-00369-w [paper, data]

Estrogen-related receptor gamma regulates mitochondrial and synaptic genes and modulates vulnerability to synucleinopathy.

Journal: NPJ Parkinson's disease

Status: data only, 1 dataset cited

[42566] doi:10.1038/s41588-022-01154-4 [paper, repository]

Genetic control of RNA splicing and its distinct role in complex trait variation.

Journal: Nature genetics

Authors' code: yanglab.westlake.edu.cn/software/osca (no license), jianyangqt/osca (GPL-3.0), Zenodo 6613469 (CC-BY-4.0)

Status: code verified, 153 files readable, 15 matches

[42567] doi:10.1038/s41598-022-17850-4 [paper, data]

Individual differences in white matter microstructure of the face processing brain network are more differentiated from global fibers with increasing ability.

Journal: Scientific reports

Status: data only, 1 dataset cited

[42568] doi:10.1073/pnas.2202515119 [paper, repository]

Neural synchronization predicts marital satisfaction.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: Zenodo 6069677 (CC-BY-4.0), Zenodo 6614433 (CC-BY-4.0), Zenodo 6960392 (CC-BY-4.0)

Status: code verified, 18 files readable

[42569] doi:10.1111/ejn.15790 [paper, repository]

Evidence for a theta-band behavioural oscillation in rapid face detection.

Journal: The European journal of neuroscience

Authors' code: xiaoyiliuXL/face-rsvp-datashare (no license)

Status: code verified, 39 files readable, 4 matches

[42570] doi:10.1111/imr.13125 [paper, data]

At the crux of maternal immune activation: Viruses, microglia, microbes, and IL-17A.

Journal: Immunological reviews

Status: data only, 1 dataset cited

[42571] doi:10.1155/2022/3039248 [paper, data]

Exploring Early Physical Examination Diagnostic Biomarkers for Alzheimer's Disease Based on Least Absolute Shrinkage and Selection Operator.

Journal: Computational and mathematical methods in medicine

Status: data only, 1 dataset cited

[42572] doi:10.1155/2022/4081380 [paper, data]

CCAAT/Enhancer-Binding Protein Delta Regulates Glioblastoma Survival through Catalase-Mediated Hydrogen Peroxide Clearance.

Journal: Oxidative medicine and cellular longevity

Status: data only, 2 datasets cited

[42573] doi:10.1186/s12989-022-00497-4 [paper, data]

Chronic maternal exposure to titanium dioxide nanoparticles alters breathing in newborn offspring.

Journal: Particle and fibre toxicology

Status: data only, 2 datasets cited

[42574] doi:10.1371/journal.pbio.3001686 [paper, repository]

Network modeling of dynamic brain interactions predicts emergence of neural information that supports human cognitive behavior.

Journal: PLoS biology

Authors' code: ColeLab/DynamicSensoryMotorEGI_release (GPL-3.0)

Status: code verified, 4 files readable, 4 matches

[42575] doi:10.3389/fnagi.2022.949074 [paper]

Accelerated aging-related transcriptome alterations in neurovascular unit cells in the brain of Alzheimer's disease.

Journal: Frontiers in aging neuroscience

Status: data only

[42576] doi:10.3389/fnagi.2022.963845 [paper, data]

Plasma β-amyloid, tau, neurodegeneration biomarkers and inflammatory factors of probable Alzheimer's disease dementia in Chinese individuals.

Journal: Frontiers in aging neuroscience

Status: data only, 2 datasets cited

[42577] doi:10.3389/fncel.2022.962106 [paper, repository]

Profiling mouse cochlear cell maturation using 10× Genomics single-cell transcriptomics.

Journal: Frontiers in cellular neuroscience

Authors' code: satijalab/seurat (other), YuLab-SMU/clusterProfiler (no license)

Status: code verified, 227 files readable, 2 matches

[42578] doi:10.3389/fnins.2022.941753 [paper, repository]

A high throughput generative vector autoregression model for stochastic synapses.

Journal: Frontiers in neuroscience

Authors' code: thennen/StochasticSynapses.jl (MIT), Zenodo 6535411 (other-open)

Status: code verified, 14 files readable

[42579] doi:10.3389/fpsyt.2022.924062 [paper, data]

Investigation of the genetic effect of 56 tobacco-smoking susceptibility genes on DNA methylation and RNA expression in human brain.

Journal: Frontiers in psychiatry

Status: data only, 1 dataset cited

[42580] doi:10.3390/cells11162564 [paper, data]

The Water Transport System in Astrocytes-Aquaporins.

Journal: Cells

Status: data only, 2 datasets cited

[42581] doi:10.3390/insects13080745 [paper, data]

Pyrethroids in an AlphaFold2 Model of the Insect Sodium Channel.

Journal: Insects

Status: data only, 1 dataset cited

[42582] doi:10.7554/elife.75839 [paper, repository]

Audiovisual task switching rapidly modulates sound encoding in mouse auditory cortex.

Journal: eLife

Authors' code: hasenstaublab/avtrainer-stim (no license)

Status: code verified, 14 files readable, 2 matches

Wednesday, 17 August 2022 (37 papers)

[42583] doi:10.1007/s00401-022-02483-8 [paper, repository]

Single-nucleus chromatin accessibility profiling highlights distinct astrocyte signatures in progressive supranuclear palsy and corticobasal degeneration.

Journal: Acta neuropathologica

Authors' code: nes-b/snATAC-seq_psp_cbd (GPL-3.0)

Status: code verified, 19 files readable, 20 matches

[42584] doi:10.1016/j.heliyon.2022.e10240 [paper, data]

Data augmentation strategies for EEG-based motor imagery decoding.

Journal: Heliyon

Status: data only, 3 datasets cited

[42585] doi:10.1016/j.isci.2022.104953 [paper, repository]

Mapping of pituitary stress-induced gene regulation connects Nrcam to negative emotions.

Journal: iScience

Authors' code: figshare 17212532 (CC-BY-4.0), figshare 17212571 (CC-BY-4.0)

Status: code verified, 2 files readable, 1 match

[42586] doi:10.1016/j.isci.2022.104966 [paper, data]

Convergent cerebrospinal fluid proteomes and metabolic ontologies in humans and animal models of Rett syndrome.

Journal: iScience

Status: code on request, 1 dataset cited

[42587] doi:10.1016/j.neuroimage.2022.119569 [paper, repository]

Cross-cohort replicability and generalizability of connectivity-based psychometric prediction patterns.

Journal: NeuroImage

Authors' code: inm7/cbpp (other)

Status: code verified, 217 files readable, 12 matches

[42588] doi:10.1016/j.nicl.2022.103154 [paper, repository]

Deep learning-based automated segmentation of resection cavities on postsurgical epilepsy MRI.

Journal: NeuroImage. Clinical

Authors' code: penn-cnt/DeepResection (no license), penn-cnt/DeepResection_Statistical_Analysis (no license)

Status: code verified, 29 files readable, 17 matches

[42589] doi:10.1016/j.nicl.2022.103155 [paper, repository]

Assessment of higher-order singular value decomposition denoising methods on dynamic hyperpolarized [1-¹³C]pyruvate MRI data from patients with glioma.

Journal: NeuroImage. Clinical

Authors' code: XinyuanZhang719/gl-hosvd (no license)

Status: code verified, 24 files readable, 1 match

[42590] doi:10.1016/s2215-0366(22)00260-7 [paper, data]

Neurological and psychiatric risk trajectories after SARS-CoV-2 infection: an analysis of 2-year retrospective cohort studies including 1 284 437 patients.

Journal: The lancet. Psychiatry

Status: data only, 1 dataset cited

[42591] doi:10.1038/s41467-022-32282-4 [paper, repository]

Emergent hypernetworks in weakly coupled oscillators.

Journal: Nature communications

Authors' code: jloespindola/Hypernetwork_data (no license), Zenodo 5749164 (CC-BY-4.0)

Status: code verified, 4 files readable, 1 match

[42592] doi:10.1038/s41531-022-00371-2 [paper, repository]

Combined functional and structural imaging of brain white matter reveals stage-dependent impairment in multiple system atrophy of cerebellar type.

Journal: NPJ Parkinson's disease

Authors' code: fil.ion.ucl.ac.uk/spm (no license)

Status: code verified

[42593] doi:10.1038/s41586-022-05094-1 [paper, repository]

Spatial profiling of chromatin accessibility in mouse and human tissues.

Journal: Nature

Authors' code: dyxmvp/Spatial_ATAC-seq (no license), rongfan8/DBiT-seq (no license), Zenodo 6565118 (other-open)

Status: code verified, 33 files readable, 7 matches

[42594] doi:10.1038/s41597-022-01622-w [paper, repository]

An Electroencephalography-based Database for studying the Effects of Acoustic Therapies for Tinnitus Treatment.

Journal: Scientific data

Authors' code: LuzAlondra/BrainComputerInterfaces (no license)

Status: code verified, 24 files readable, 1 match

[42595] doi:10.1038/s41598-022-17769-w [paper, repository]

Predicting social anxiety in young adults with machine learning of resting-state brain functional radiomic features.

Journal: Scientific reports

Authors' code: egyptdj/fmri-radiomic-ml-sad (GPL-3.0)

Status: code verified, 3 files readable, 4 matches

[42596] doi:10.1038/s41598-022-18206-8 [paper, data]

Automatic detection of microaneurysms in optical coherence tomography images of retina using convolutional neural networks and transfer learning.

Journal: Scientific reports

Status: data only, 1 dataset cited

[42597] doi:10.1038/s41598-022-18348-9 [paper]

Identification of potential targets of the curcumin analog CCA-1.1 for glioblastoma treatment : integrated computational analysis and in vitro study.

Journal: Scientific reports

Status: data only

[42598] doi:10.1098/rsos.220334 [paper, repository]

Citation counts and journal impact factors do not capture some indicators of research quality in the behavioural and brain sciences.

Journal: Royal Society open science

Authors' code: OSF hngwx (no license)

Status: code verified, 11 files readable, 6 matches

[42599] doi:10.1101/2022.08.16.504030 [paper, data]

Centripetal integration of past events by hippocampal astrocytes and its regulation by the locus coeruleus

Journal: bioRxiv (preprint)

Status: data only, 2 datasets cited

[42600] doi:10.1111/acel.13693 [paper, data]

Reduced bone morphogenic protein signaling along the gut-neuron axis by heat shock factor promotes longevity.

Journal: Aging cell

Status: data only, 1 dataset cited

[42601] doi:10.1126/sciadv.abo7112 [paper, repository]

De novo variants in genes regulating stress granule assembly associate with neurodevelopmental disorders.

Journal: Science advances

Authors' code: scidb.cn/s/eu3m2m (no license)

Status: code verified

[42602] doi:10.1128/jvi.00957-22 [paper, data]

Characterization of Macrophage-Tropic HIV-1 Infection of Central Nervous System Cells and the Influence of Inflammation.

Journal: Journal of virology

Status: data only, 1 dataset cited

[42603] doi:10.1159/000526564 [paper, data]

Feasibility, Efficiency, and Safety of Zero-Fluoroscopy Catheter Interventions for Right-Sided Cardiac Arrhythmias Using Only Electroanatomic Mapping.

Journal: Cardiology

Status: data only, 1 dataset cited

[42604] doi:10.1186/s13073-022-01097-9 [paper, data]

High-dimensional investigation of the cerebrospinal fluid to explore and monitor CNS immune responses.

Journal: Genome medicine

Status: data only, 2 datasets cited

[42605] doi:10.3389/finsc.2022.936826 [paper, repository]

Chronic exposure to insecticides impairs honeybee optomotor behaviour.

Journal: Frontiers in insect science

Authors' code: Zenodo 6260563 (MIT)

Status: code verified, 9 files readable, 2 matches

[42606] doi:10.3389/fnhum.2022.951591 [paper, repository]

Closed-loop motor imagery EEG simulation for brain-computer interfaces.

Journal: Frontiers in human neuroscience

Authors' code: mcvain/bci-simulator (BSD-3-Clause)

Status: code verified, 12 files readable, 6 matches

[42607] doi:10.3389/fnhum.2022.955607 [paper, repository]

Sex differences in gene regulatory networks during mid-gestational brain development.

Journal: Frontiers in human neuroscience

Authors' code: victortoledo/frontiers_sexdiff_fetal_brain (no license)

Status: code verified, 14 files readable, 5 matches

[42608] doi:10.3389/fpsyg.2022.897603 [paper, data]

Interactive neurorobotics: Behavioral and neural dynamics of agent interactions.

Journal: Frontiers in psychology

Status: data only, 1 dataset cited

[42609] doi:10.3390/biom12081130 [paper, repository]

Detecting Fear-Memory-Related Genes from Neuronal scRNA-seq Data by Diverse Distributions and Bhattacharyya Distance.

Journal: Biomolecules

Authors' code: shaoqiangzhang/DEGman (GPL-3.0)

Status: code verified, 7 files readable

[42610] doi:10.3390/brainsci12081093 [paper, data]

The Affect Misattribution in the Interpretation of Ambiguous Stimuli in Terms of Warmth vs. Competence: Behavioral Phenomenon and Its Neural Correlates.

Journal: Brain sciences

Status: data only, 1 dataset cited

[42611] doi:10.3390/brainsci12081094 [paper, repository]

Decoding Task-Based fMRI Data with Graph Neural Networks, Considering Individual Differences.

Journal: Brain sciences

Authors' code: krzysztoffiok/gnn-classification-pipeline (MIT)

Status: code verified, 12 files readable, 6 matches

[42612] doi:10.3390/cancers14163970 [paper, data]

Neurotransmitters: Potential Targets in Glioblastoma.

Journal: Cancers

Status: data only, 1 dataset cited

[42613] doi:10.3390/ijms23169228 [paper, data]

Impact of Autophagy Impairment on Experience- and Diet-Related Synaptic Plasticity.

Journal: International journal of molecular sciences

Status: data only, 1 dataset cited

[42614] doi:10.3390/ijms23169276 [paper, data]

<i>TMEM106B</i> Acts as a Modifier of Cognitive and Motor Functions in Amyotrophic Lateral Sclerosis.

Journal: International journal of molecular sciences

Status: data only, 1 dataset cited

[42615] doi:10.3390/s22166148 [paper, repository]

Brain Decoding of Multiple Subjects for Estimating Visual Information Based on a Probabilistic Generative Model.

Journal: Sensors (Basel, Switzerland)

Authors' code: KamitaniLab/GenericObjectDecoding (MIT)

Status: code verified, 91 files readable

[42616] doi:10.3390/s22166160 [paper, repository]

AtAwAR Translate: Attention-Aware Language Translation Application in Augmented Reality for Mobile Phones.

Journal: Sensors (Basel, Switzerland)

Authors' code: OSF bxdkw (no license)

Status: empty repository

[42617] doi:10.7554/elife.64575 [paper, repository]

Value representations in the rodent orbitofrontal cortex drive learning, not choice.

Journal: eLife

Authors' code: kevin-j-miller/mbb2022-orbitofrontal-learning-choosing (Apache-2.0)

Status: code verified, 149 files readable, 8 matches

[42618] doi:10.7554/elife.78811 [paper, repository]

An increase of inhibition drives the developmental decorrelation of neural activity.

Journal: eLife

Authors' code: gin.g-node.org/mchini/development_ei_decorrelation (CC0-1.0), mchini/Chini_et_al_EI_decorrelation (GPL-3.0)

Status: empty repository, 4 files readable

[42619] doi:10.7717/peerj.13913 [paper, data]

Complex interactions between p.His558Arg and linked variants in the sodium voltage-gated channel alpha subunit 5 (Na <i>_V</i> 1.5).

Journal: PeerJ

Status: data only, 1 dataset cited

Tuesday, 16 August 2022 (25 papers)

[42620] doi:10.1002/hbm.26050 [paper, data]

MRI-informed cortical features for brain age prediction in age-specific adulthoods.

Journal: Human brain mapping

Status: data only, 1 dataset cited

[42621] doi:10.1016/j.devcel.2022.07.015 [paper, data]

The spatiotemporal dynamics of microglia across the human lifespan.

Journal: Developmental cell

Status: code on request, 1 dataset cited

[42622] doi:10.1016/j.ynirp.2022.100119 [paper]

Domain-specific neural substrates underlie the framing effect.

Journal: Neuroimage. Reports

Status: code on request

[42623] doi:10.1038/s41467-022-32207-1 [paper, repository]

Neural circuit for social authentication in song learning.

Journal: Nature communications

Authors' code: Zenodo 6630127 (CC-BY-4.0), Zenodo 6630093 (CC-BY-4.0), Zenodo 6630340 (CC-BY-4.0)

Status: code verified, 7 files readable

[42624] doi:10.1038/s41467-022-32229-9 [paper, repository]

Primary cilia and SHH signaling impairments in human and mouse models of Parkinson's disease.

Journal: Nature communications

Authors' code: well.ox.ac.uk/~wrayner/strand (no license), ensembl.org/info/data (no license), theislab/ipsc_ipd_analysis (no license), Zenodo 6656506 (other-open)

Status: code verified, 11 files readable, 10 matches

[42625] doi:10.1038/s41467-022-32490-y [paper, data]

Spatiotemporal single-cell regulatory atlas reveals neural crest lineage diversification and cellular function during tooth morphogenesis.

Journal: Nature communications

Status: data only, 1 dataset cited

[42626] doi:10.1038/s41467-022-32556-x [paper, data]

A functional role of meningeal lymphatics in sex difference of stress susceptibility in mice.

Journal: Nature communications

Status: data only, 1 dataset cited

[42627] doi:10.1038/s41467-022-32559-8 [paper, repository]

A direct excitatory projection from entorhinal layer 6b neurons to the hippocampus contributes to spatial coding and memory.

Journal: Nature communications

Authors' code: sommerc/coloco3surf (no license), kevin-allen/positrack (GPL-3.0), igridchyn/lfp_online (no license), git.ist.ac.at/alois.schloegl/ktan.git (no license)

Status: code verified, 164 files readable, 2 matches

[42628] doi:10.1038/s41540-022-00235-8 [paper, repository]

Mapping the dynamics of insulin-responsive pathways in the blood-brain barrier endothelium using time-series transcriptomics data.

Journal: NPJ systems biology and applications

Authors' code: KalariRKLab/InsulinTreatedBBB (no license)

Status: code verified, 3 files readable

[42629] doi:10.1038/s41598-022-17727-6 [paper, repository]

Brain aging differs with cognitive ability regardless of education.

Journal: Scientific reports

Authors' code: Lifebrain/p032-gca-brain-change (MIT)

Status: empty repository, 2 files readable

[42630] doi:10.1093/braincomms/fcac206 [paper, data]

Exposure to phenytoin associates with a lower risk of post-COVID cognitive deficits: a cohort study.

Journal: Brain communications

Status: data only, 1 dataset cited

[42631] doi:10.1186/s12967-022-03570-w [paper, data]

Dual roles of interleukin-33 in cognitive function by regulating central nervous system inflammation.

Journal: Journal of translational medicine

Status: data only, 1 dataset cited

[42632] doi:10.1186/s13041-022-00958-z [paper, data]

Genome-wide analysis of genes encoding core components of the ubiquitin system during cerebral cortex development.

Journal: Molecular brain

Status: data only, 1 dataset cited

[42633] doi:10.1186/s40478-022-01417-5 [paper, data]

Modeling the early stages of Alzheimer's disease by administering intracerebroventricular injections of human native Aβ oligomers to rats.

Journal: Acta neuropathologica communications

Status: data only, 1 dataset cited

[42634] doi:10.1242/dmm.049436 [paper]

FGF8-FGFR1 signaling regulates human GnRH neuron differentiation in a time- and dose-dependent manner.

Journal: Disease models & mechanisms

Status: data only

[42635] doi:10.1242/dmm.049591 [paper, data]

Patient-associated mutations in Drosophila Alk perturb neuronal differentiation and promote survival.

Journal: Disease models & mechanisms

Status: data only, 1 dataset cited

[42636] doi:10.3389/fcell.2022.933897 [paper, data]

Coherent anti-Stokes Raman scattering cell imaging and segmentation with unsupervised data analysis.

Journal: Frontiers in cell and developmental biology

Status: data only, 1 dataset cited

[42637] doi:10.3389/fcell.2022.945793 [paper, data]

RNA sequencing profiling of mRNAs, long noncoding RNAs, and circular RNAs in Trigeminal Ganglion following Temporomandibular Joint inflammation.

Journal: Frontiers in cell and developmental biology

Status: data only, 1 dataset cited

[42638] doi:10.3389/fmed.2022.963883 [paper, data]

Identification of key biomarkers in Angelman syndrome by a multi-cohort analysis.

Journal: Frontiers in medicine

Status: data only, 1 dataset cited

[42639] doi:10.3389/fncom.2022.903883 [paper, repository]

Patterns of synchronization in 2D networks of inhibitory neurons.

Journal: Frontiers in computational neuroscience

Authors' code: modeldb:267329 (no license)

Status: code found, still to be checked

[42640] doi:10.3389/fnins.2022.973761 [paper, repository]

MMASleepNet: A multimodal attention network based on electrophysiological signals for automatic sleep staging.

Journal: Frontiers in neuroscience

Authors' code: buptantEEG/MMASleepNet (no license)

Status: code verified, 47 files readable, 10 matches

[42641] doi:10.3390/diagnostics12081980 [paper, data]

An Analysis of Vocal Features for Parkinson's Disease Classification Using Evolutionary Algorithms.

Journal: Diagnostics (Basel, Switzerland)

Status: data only, 1 dataset cited

[42642] doi:10.3390/e24081132 [paper, repository]

Revisiting Sequential Information Bottleneck: New Implementation and Evaluation.

Journal: Entropy (Basel, Switzerland)

Authors' code: ibm/sib (Apache-2.0)

Status: code verified, 29 files readable, 4 matches

[42643] doi:10.7554/elife.70633 [paper, repository]

Mutual interaction between visual homeostatic plasticity and sleep in adult humans.

Journal: eLife

Authors' code: supp:PMC9417418/elife-70633-code1.zip (no license)

Status: code verified, 6 files readable, 2 matches

[42644] doi:10.7717/peerj.13856 [paper, data]

Integrated bioinformatics analysis identifies the effects of Sema3A/NRP1 signaling in oligodendrocytes after spinal cord injury in rats.

Journal: PeerJ

Status: data only, 1 dataset cited

Monday, 15 August 2022 (31 papers)

[42645] doi:10.1007/s12015-022-10433-w [paper, data]

Reenacting Neuroectodermal Exposure of Hematopoietic Progenitors Enables Scalable Production of Cryopreservable iPSC-Derived Human Microglia.

Journal: Stem cell reviews and reports

Status: data only, 6 datasets cited

[42646] doi:10.1007/s12530-022-09455-z [paper, data]

Evolving fuzzy neural classifier that integrates uncertainty from human-expert feedback.

Journal: Evolving systems

Status: data only, 1 dataset cited

[42647] doi:10.1016/j.crmeth.2022.100268 [paper]

All-optical inter-layers functional connectivity investigation in the mouse retina.

Journal: Cell reports methods

Status: code on request

[42648] doi:10.1016/j.cub.2022.07.049 [paper, repository]

Look-up and look-down neurons in the mouse visual thalamus during freely moving exploration.

Journal: Current biology : CB

Authors' code: OSF q6cwp (no license)

Status: code verified

[42649] doi:10.1038/s41467-022-32311-2 [paper]

Circular EZH2-encoded EZH2-92aa mediates immune evasion in glioblastoma via inhibition of surface NKG2D ligands.

Journal: Nature communications

Status: data only

[42650] doi:10.1038/s41467-022-32381-2 [paper, repository]

Precision dynamical mapping using topological data analysis reveals a hub-like transition state at rest.

Journal: Nature communications

Authors' code: thomasyeolab/cbig (MIT), braindynamicslab/tda-msc-rsfMRI (BSD-3-Clause)

Status: code verified, 2,006 files readable, 1 match

[42651] doi:10.1038/s41467-022-32385-y [paper]

Distractibility and impulsivity neural states are distinct from selective attention and modulate the implementation of spatial attention.

Journal: Nature communications

Status: code on request

[42652] doi:10.1038/s41467-022-32448-0 [paper, data]

A slow-cycling/quiescent cells subpopulation is involved in glioma invasiveness.

Journal: Nature communications

Status: data only, 2 datasets cited

[42653] doi:10.1038/s41467-022-32462-2 [paper, data]

Sirt2 promotes white matter oligodendrogenesis during development and in models of neonatal hypoxia.

Journal: Nature communications

Status: data only, 1 dataset cited

[42654] doi:10.1038/s43587-022-00263-3 [paper, repository]

Nuclear morphology is a deep learning biomarker of cellular senescence.

Journal: Nature aging

Authors' code: scheibye-knudsen-lab/sen_predictor (no license)

Status: code verified, 8 files readable, 1 match

[42655] doi:10.1073/pnas.2202821119 [paper, data]

O-GlcNAcylation promotes cerebellum development and medulloblastoma oncogenesis via SHH signaling.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 1 dataset cited

[42656] doi:10.1073/pnas.2203165119 [paper, repository]

Two distinct ways to form long-term object recognition memory during sleep and wakefulness.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: MedPsychTuebingen/Two-distinct-ways-to-form-long-term-object-recognition-memory-during-sleep-and-wakefulness (no license)

Status: code verified, 12 files readable, 2 matches

[42657] doi:10.1073/pnas.2206066119 [paper, data]

Dopamine and GPCR-mediated modulation of DN1 clock neurons gates the circadian timing of sleep.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 1 dataset cited

[42658] doi:10.1073/pnas.2206069119 [paper, repository]

Deep learning predicts DNA methylation regulatory variants in the human brain and elucidates the genetics of psychiatric disorders.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: LieberInstitute/INTERACT (no license)

Status: code verified, 22 files readable, 2 matches

[42659] doi:10.1073/pnas.2206175119 [paper, repository]

On the formation of ordered protein assemblies in cell-cell interfaces.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: Rubinstein-Lab (no license)

Status: code verified

[42660] doi:10.1073/pnas.2206208119 [paper, data]

The glioblastoma multiforme tumor site promotes the commitment of tumor-infiltrating lymphocytes to the T&lt;sub&gt;H&lt;/sub&gt;17 lineage in humans.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 1 dataset cited

[42661] doi:10.1097/j.pain.0000000000002758 [paper, repository]

Unbiased analysis of the dorsal root ganglion after peripheral nerve injury: no neuronal loss, no gliosis, but satellite glial cell plasticity.

Journal: Pain

Authors' code: AmSchulte/DRG (no license)

Status: code verified, 14 files readable, 3 matches

[42662] doi:10.1111/ejn.15787 [paper, data]

Sign-tracking modulates reward-related neural activation to reward cues, but not reward feedback.

Journal: The European journal of neuroscience

Status: data only, 1 dataset cited

[42663] doi:10.1371/journal.pcbi.1010365 [paper, repository]

Regimes and mechanisms of transient amplification in abstract and biological neural networks.

Journal: PLoS computational biology

Authors' code: ejagnes/transient_amplification_abst_bio (MIT)

Status: code verified, 22 files readable, 5 matches

[42664] doi:10.1371/journal.pone.0270339 [paper, repository]

Integrated 3d flow-based multi-atlas brain structure segmentation.

Journal: PloS one

Authors' code: DanielLeee/intflow (MIT)

Status: code verified, 13 files readable, 3 matches

[42665] doi:10.1371/journal.pone.0272268 [paper, data]

Continuous theta-burst stimulation to the sensorimotor cortex affects contralateral gamma-aminobutyric acid level and resting-state networks.

Journal: PloS one

Status: data only, 1 dataset cited

[42666] doi:10.1371/journal.pone.0272923 [paper, data]

Cosmetic makeup enhances facial attractiveness and affective neural responses.

Journal: PloS one

Status: data only, 1 dataset cited

[42667] doi:10.15252/embr.202154420 [paper, repository]

Bipolar-associated miR-499-5p controls neuroplasticity by downregulating the Cav1.2 subunit CACNB2.

Journal: EMBO reports

Authors' code: dcolam/Cluster-Analysis-Plugin (MIT)

Status: code verified, 20 files readable

[42668] doi:10.15252/emmm.202216269 [paper, data]

Systemic inflammation after stroke: implications for post-stroke comorbidities.

Journal: EMBO molecular medicine

Status: data only, 1 dataset cited

[42669] doi:10.3389/fcell.2022.976549 [paper, repository]

Production of human entorhinal stellate cell-like cells by forward programming shows an important role of Foxp1 in reprogramming.

Journal: Frontiers in cell and developmental biology

Authors' code: BDD-lab/EC-scRNAseq-2021 (no license)

Status: code verified, 5 files readable, 3 matches

[42670] doi:10.3389/fnins.2022.926426 [paper, repository]

A morphological study of schizophrenia with magnetic resonance imaging, advanced analytics, and machine learning.

Journal: Frontiers in neuroscience

Authors' code: stfxecutables/df-analyze (no license)

Status: code verified, 172 files readable, 2 matches

[42671] doi:10.3389/fnut.2022.945052 [paper, data]

Milk fat globule membrane supplementation to obese rats during pregnancy and lactation promotes neurodevelopment in offspring <i>via</i> modulating gut microbiota.

Journal: Frontiers in nutrition

Status: data only, 1 dataset cited

[42672] doi:10.3389/fpsyt.2022.904845 [paper, repository]

The association between language-based task-functional magnetic resonance imaging hemodynamics and baseline GABA+ and glutamate-glutamine measured in pre-supplementary motor area: A pilot study in an aging model.

Journal: Frontiers in psychiatry

Authors' code: vespa-mrs/vespa (BSD-3-Clause)

Status: code verified, 514 files readable, 4 matches

[42673] doi:10.3390/biology11081220 [paper, data]

Intelligent Epileptic Seizure Detection and Classification Model Using Optimal Deep Canonical Sparse Autoencoder.

Journal: Biology

Status: data only, 1 dataset cited

[42674] doi:10.3390/s22166093 [paper, data]

Motor Imagery Analysis from Extensive EEG Data Representations Using Convolutional Neural Networks.

Journal: Sensors (Basel, Switzerland)

Status: data only, 1 dataset cited

[42675] doi:10.7554/elife.73155 [paper, repository]

Local field potentials reflect cortical population dynamics in a region-specific and frequency-dependent manner.

Journal: eLife

Authors' code: BeNeuroLab/Relationship_between_latent_dynamics_and_LFP (no license)

Status: code verified, 42 files readable, 8 matches

Sunday, 14 August 2022 (5 papers)

[42676] doi:10.1002/hbm.26047 [paper]

Temporal stability of the hemodynamic response function across the majority of human cerebral cortex.

Journal: Human brain mapping

Status: code on request

[42677] doi:10.1016/j.cortex.2022.07.014 [paper, data]

Efficient and effective assessment of deficits and their neural bases in stroke aphasia.

Journal: Cortex; a journal devoted to the study of the nervous system and behavior

Status: data only, 1 dataset cited

[42678] doi:10.1016/j.dib.2022.108542 [paper, repository]

Dataset on acute stroke risk stratification from CT angiographic radiomics.

Journal: Data in brief

Authors' code: emilywavery/radiomics-data-sharing (AGPL-3.0)

Status: empty repository, 2 files readable

[42679] doi:10.1111/ejn.15768 [paper, repository]

The influence of phoneme contexts on adaptation in vowel-evoked envelope following responses.

Journal: The European journal of neuroscience

Authors' code: myKungFu/ARLas (GPL-3.0)

Status: code verified, 159 files readable, 2 matches

[42680] doi:10.1186/s13578-022-00864-w [paper, data]

Osteoclast-derived extracellular vesicles are implicated in sensory neurons sprouting through the activation of epidermal growth factor signaling.

Journal: Cell & bioscience

Status: data only, 2 datasets cited

Saturday, 13 August 2022 (14 papers)

[42681] doi:10.1016/j.ebiom.2022.104223 [paper, data]

Rethinking the initial changes in subarachnoid haemorrhage: Focusing on real-time metabolism during early brain injury.

Journal: EBioMedicine

Status: data only, 1 dataset cited

[42682] doi:10.1016/j.isci.2022.104936 [paper]

Activation of GDNF-ERK-Runx1 signaling contributes to P2X3R gene transcription and bone cancer pain.

Journal: iScience

Status: code on request

[42683] doi:10.1016/j.xops.2022.100209 [paper, repository]

Primary Open-Angle Glaucoma Diagnosis from Optic Disc Photographs Using a Siamese Network.

Journal: Ophthalmology science

Authors' code: XiaofeiWang2018/DeepGF (no license), bionlplab/poagnet (BSD-3-Clause)

Status: code verified, 59 files readable

[42684] doi:10.1038/s41467-022-31583-y [paper, repository]

Extraction of accurate cytoskeletal actin velocity distributions from noisy measurements.

Journal: Nature communications

Authors' code: Zenodo 6609731 (other-open), caylamiller/actintracking (GPL-3.0)

Status: code verified, 32 files readable, 4 matches

[42685] doi:10.1038/s41467-022-32378-x [paper, repository]

Visual evoked feedforward-feedback traveling waves organize neural activity across the cortical hierarchy in mice.

Journal: Nature communications

Authors' code: mullerlab/wave-matlab (GPL-3.0), Zenodo 6578571 (CC-BY-4.0)

Status: code verified, 115 files readable, 3 matches

[42686] doi:10.1155/2022/9374946 [paper, repository]

Recall Network: A Simple Brain-Inspired Algorithm for Classification.

Journal: Computational intelligence and neuroscience

Authors' code: tianzhaoning/rrn (no license)

Status: code verified, 1,795 files readable, 4 matches

[42687] doi:10.1186/s12864-022-08807-y [paper, data]

Conceptual framework for the insect metamorphosis from larvae to pupae by transcriptomic profiling, a case study of Helicoverpa armigera (Lepidoptera: Noctuidae).

Journal: BMC genomics

Status: data only, 10 datasets cited

[42688] doi:10.1186/s12877-022-03334-7 [paper, data]

Protocol for a randomized controlled trial of mindfulness-based stress reduction to improve attentional control in older adults (HealthyAgers trial).

Journal: BMC geriatrics

Status: data only, 1 dataset cited

[42689] doi:10.1186/s13287-022-03104-7 [paper, data]

Single-cell transcriptomics reveals the cell fate transitions of human dopaminergic progenitors derived from hESCs.

Journal: Stem cell research & therapy

Status: data only, 1 dataset cited

[42690] doi:10.2147/cia.s368079 [paper, data]

Calanus Oil Supplementation Does Not Further Improve Short-Term Memory or Brain-Derived Neurotrophic Factor in Older Women Who Underwent Exercise Training.

Journal: Clinical interventions in aging

Status: data only, 1 dataset cited

[42691] doi:10.3390/brainsci12081074 [paper, data]

Adaptive Cognitive Control in Prematurely Born Children: An HD-EEG Investigation.

Journal: Brain sciences

Status: data only, 1 dataset cited

[42692] doi:10.3390/bs12080285 [paper, data]

A Decoding Prediction Model of Flexion and Extension of Left and Right Feet from Electroencephalogram.

Journal: Behavioral sciences (Basel, Switzerland)

Status: data only, 2 datasets cited

[42693] doi:10.3390/e24081118 [paper, repository]

A Fast and Efficient Ensemble Transfer Entropy and Applications in Neural Signals.

Journal: Entropy (Basel, Switzerland)

Authors' code: modeldb:263637 (no license)

Status: code found, still to be checked

[42694] doi:10.3390/genes13081441 [paper]

Transcriptomic and Phenotypic Analysis of CRISPR/Cas9-Mediated <i>gluk2</i> Knockout in Zebrafish.

Journal: Genes

Status: data only

Friday, 12 August 2022 (28 papers)

[42695] doi:10.1016/j.cub.2022.07.038 [paper, repository]

Gliotransmission of D-serine promotes thirst-directed behaviors in Drosophila.

Journal: Current biology : CB

Authors' code: mikedh/trimesh (MIT), navis-org/skeletor (GPL-3.0), sims-lab/FlyThirst (no license)

Status: code verified, 304 files readable, 1 match

[42696] doi:10.1016/j.isci.2022.104929 [paper, data]

Plasticity after cognitive training reflected in prefrontal local field potentials.

Journal: iScience

Status: code on request, 1 dataset cited

[42697] doi:10.1016/j.neuron.2022.07.017 [paper, repository]

Task specificity in mouse parietal cortex.

Journal: Neuron

Authors' code: cortex-lab/Rigbox (GPL-3.0), mkrumin/EyeTracking (no license), cortex-lab/wheelanalysis (no license)

Status: code verified, 593 files readable, 5 matches

[42698] doi:10.1038/s41380-022-01714-4 [paper, repository]

Trans-genetic effects of circular RNA expression quantitative trait loci and potential causal mechanisms in autism.

Journal: Molecular psychiatry

Authors' code: TreesLab/circQTL_ASD (no license)

Status: code verified, 10 files readable, 2 matches

[42699] doi:10.1038/s41419-022-05062-7 [paper, data]

miR-596-3p suppresses brain metastasis of non-small cell lung cancer by modulating YAP1 and IL-8.

Journal: Cell death & disease

Status: data only, 1 dataset cited

[42700] doi:10.1038/s41467-022-32461-3 [paper, repository]

Control of non-REM sleep by ventrolateral medulla glutamatergic neurons projecting to the preoptic area.

Journal: Nature communications

Authors' code: Zenodo 6870710 (CC-BY-4.0), Zenodo 6870666 (CC-BY-4.0), Zenodo 6870689 (CC-BY-4.0)

Status: code verified, 83 files readable, 6 matches

[42701] doi:10.1038/s41598-022-17503-6 [paper, data]

BDNF, proBDNF and IGF-1 serum levels in naïve and medicated subjects with autism.

Journal: Scientific reports

Status: data only, 1 dataset cited

[42702] doi:10.1038/s41598-022-17709-8 [paper, repository]

Deep learning for quality assessment of optical coherence tomography angiography images.

Journal: Scientific reports

Authors' code: rahuldhodapkar/octa-qc (no license)

Status: code verified, 26 files readable, 3 matches

[42703] doi:10.1093/braincomms/fcac205 [paper, repository]

Faecal microbiota transplant ameliorates gut dysbiosis and cognitive deficits in Huntington's disease mice.

Journal: Brain communications

Authors' code: SarithaKodikara/Fecal-microbiota-transplant-therapeutic-effect-in-a-Huntington-s-disease-mouse-model (no license)

Status: code verified, 5 files readable, 2 matches

[42704] doi:10.1093/nc/niac011 [paper, data]

An academic survey on theoretical foundations, common assumptions and the current state of consciousness science.

Journal: Neuroscience of consciousness

Status: data only, 1 dataset cited

[42705] doi:10.1098/rsfs.2022.0020 [paper, repository]

Mathematical modelling of oxygen transport in a muscle-on-chip device.

Journal: Interface focus

Authors' code: doi:10.6084/m9.figshare.c.6097588 (no license)

Status: code found, still to be checked

[42706] doi:10.1101/2022.08.12.503715 [paper, data]

Metabolic demands of the posteromedial default mode network are shaped by dorsal attention and frontoparietal control networks

Journal: bioRxiv (preprint)

Status: data only, 1 dataset cited

[42707] doi:10.1111/epi.17380 [paper]

Elevated photic response is followed by a rapid decay and depressed state in ictogenic networks.

Journal: Epilepsia

Status: code on request

[42708] doi:10.1155/2022/8122532 [paper, data]

Identification and Experimental Validation of Marker Genes between Diabetes and Alzheimer's Disease.

Journal: Oxidative medicine and cellular longevity

Status: data only, 7 datasets cited

[42709] doi:10.1186/s12904-022-01035-x [paper, data]

Outpatient palliative care during the COVID-19 pandemic: a retrospective single centre analysis in Germany.

Journal: BMC palliative care

Status: data only, 1 dataset cited

[42710] doi:10.1371/journal.pcbi.1010353 [paper, repository]

Brain signal predictions from multi-scale networks using a linearized framework.

Journal: PLoS computational biology

Authors' code: LFPy/LFPykernels (GPL-3.0), Zenodo 5720619 (other-open)

Status: code verified, 170 files readable, 20 matches

[42711] doi:10.1371/journal.ppat.1010747 [paper, data]

Distinct translatome changes in specific neural populations precede electroencephalographic changes in prion-infected mice.

Journal: PLoS pathogens

Status: data only, 1 dataset cited

[42712] doi:10.3389/fgene.2022.912813 [paper, repository]

Sampling and ranking spatial transcriptomics data embeddings to identify tissue architecture.

Journal: Frontiers in genetics

Authors' code: YuLin-code/MP-MIM (no license)

Status: code verified, 28 files readable, 8 matches

[42713] doi:10.3389/fgene.2022.924802 [paper, data]

Screening seven hub genes associated with prognosis and immune infiltration in glioblastoma.

Journal: Frontiers in genetics

Status: data only, 1 dataset cited

[42714] doi:10.3389/fnagi.2022.901140 [paper, repository]

Multimodal magnetic resonance imaging reveals distinct sensitivity of hippocampal subfields in asymptomatic stage of Alzheimer's disease.

Journal: Frontiers in aging neuroscience

Authors' code: AthenaEPI/dmipy (MIT)

Status: code verified, 122 files readable, 3 matches

[42715] doi:10.3389/fncom.2022.942979 [paper, data]

E2ENNet: An end-to-end neural network for emotional brain-computer interface.

Journal: Frontiers in computational neuroscience

Status: data only, 1 dataset cited

[42716] doi:10.3389/fonc.2022.889351 [paper, data]

Identification of the novel prognostic biomarker, MLLT11, reveals its relationship with immune checkpoint markers in glioma.

Journal: Frontiers in oncology

Status: data only, 1 dataset cited

[42717] doi:10.3390/brainsci12081067 [paper, repository]

A Novel Deep Learning Radiomics Model to Discriminate AD, MCI and NC: An Exploratory Study Based on Tau PET Scans from ADNI.

Journal: Brain sciences

Authors' code: mvallieres/radiomics (GPL-3.0)

Status: code verified, 361 files readable, 2 matches

[42718] doi:10.3390/ijms23169027 [paper]

SIRT7 Deficiency Protects against Aβ&lt;sub&gt;42&lt;/sub&gt;-Induced Apoptosis through the Regulation of NOX4-Derived Reactive Oxygen Species Production in SH-SY5Y Cells.

Journal: International journal of molecular sciences

Status: data only

[42719] doi:10.3390/medicina58081090 [paper, data]

Multi-Modal Brain Tumor Detection Using Deep Neural Network and Multiclass SVM.

Journal: Medicina (Kaunas, Lithuania)

Status: data only, 1 dataset cited

[42720] doi:10.3390/s22166042 [paper, data]

Whitening Technique Based on Gram-Schmidt Orthogonalization for Motor Imagery Classification of Brain-Computer Interface Applications.

Journal: Sensors (Basel, Switzerland)

Status: data only, 1 dataset cited

[42721] doi:10.7554/elife.72196 [paper, repository]

Learning to predict target location with turbulent odor plumes.

Journal: eLife

Authors' code: LCSL/FALKON_paper (no license)

Status: code verified, 18 files readable

[42722] doi:10.7554/elife.78677 [paper, repository]

Information flows from hippocampus to auditory cortex during replay of verbal working memory items.

Journal: eLife

Authors' code: vdimakopoulos/verbal_working_memory (Apache-2.0), jniediek/combinato (MIT)

Status: code verified, 232 files readable, 2 matches

Thursday, 11 August 2022 (22 papers)

[42723] doi:10.1007/s00018-022-04495-9 [paper, repository]

Systems spatiotemporal dynamics of traumatic brain injury at single-cell resolution reveals humanin as a therapeutic target.

Journal: Cellular and molecular life sciences : CMLS

Authors' code: darneson/DropSeq (no license)

Status: code verified, 2 files readable

[42724] doi:10.1016/j.dcn.2022.101144 [paper, repository]

The ABCD stop signal data: Response to Bissett et al.

Journal: Developmental cognitive neuroscience

Authors' code: sahahn/SST_Response (no license), ABCD-STUDY (no license)

Status: code verified, 8 files readable, 2 matches

[42725] doi:10.1016/j.isci.2022.104913 [paper, data]

Deep learning models fail to capture the configural nature of human shape perception.

Journal: iScience

Status: data only, 1 dataset cited

[42726] doi:10.1016/j.isci.2022.104917 [paper, repository]

Deciphering the dynamic niches and regeneration-associated transcriptional program of motoneurons following peripheral nerve injury.

Journal: iScience

Authors' code: aertslab/pySCENIC (GPL-3.0), htseq/htseq (GPL-3.0)

Status: code verified, 94 files readable, 2 matches

[42727] doi:10.1016/j.isci.2022.104919 [paper, repository]

Repeated applications of high potassium elicit long-term changes in a motor circuit from the crab, &lt;i&gt;Cancer borealis&lt;/i&gt;.

Journal: iScience

Authors' code: marderlab (no license), sg-s/crabsort (GPL-3.0)

Status: code verified, 152 files readable

[42728] doi:10.1016/j.neuroscience.2022.07.030 [paper, repository]

Evoking the N400 Event-related Potential (ERP) Component Using a Publicly Available Novel Set of Sentences with Semantically Incongruent or Congruent Eggplants (Endings).

Journal: Neuroscience

Authors' code: doi:10.5061/dryad.6wwpzgmx4 (no license), Zenodo 6331141 (MIT)

Status: code verified, 7 files readable, 2 matches

[42729] doi:10.1016/j.xpro.2022.101614 [paper, repository]

Protocol for topology-preserving smoothing of BOLD fMRI retinotopic maps of the human visual cortex.

Journal: STAR protocols

Authors' code: Retinotopy-mapping-Research/TPSR (BSD-3-Clause), gllmflndn/gifti (MIT), Zenodo 6774984 (other-open)

Status: code verified, 1,269 files readable, 9 matches

[42730] doi:10.1038/s41398-022-02103-9 [paper, repository]

Acute and long-term effects of psilocybin on energy balance and feeding behavior in mice.

Journal: Translational psychiatry

Authors' code: CBMR-Single-Cell-Omics-Platform/Acute-and-long-term-effects-of-psilocybin-on-energy-balance-and-feeding-behavior-in-mice (GPL-3.0)

Status: code verified, 6 files readable

[42731] doi:10.1038/s41467-022-31733-2 [paper, repository]

Functional control of oscillator networks.

Journal: Nature communications

Authors' code: tommasomenara/functional_control (GPL-3.0), Zenodo 4546413 (other-open)

Status: code verified, 52 files readable, 6 matches

[42732] doi:10.1038/s41467-022-32442-6 [paper, data]

Structural insights into inhibitory mechanism of human excitatory amino acid transporter EAAT2.

Journal: Nature communications

Status: data only, 1 dataset cited

[42733] doi:10.1038/s41598-022-18071-5 [paper, repository]

Digital reconstruction of infraslow activity in human intracranial ictal recordings using a deconvolution-based inverse filter.

Journal: Scientific reports

Authors' code: sominlee14/deconvolution_based_inverse_filter (no license)

Status: code verified, 11 files readable

[42734] doi:10.1073/pnas.2200960119 [paper, data]

Morphological, cellular, and molecular basis of brain infection in COVID-19 patients.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 1 dataset cited

[42735] doi:10.1080/19768354.2022.2110937 [paper]

Neuro-immune interactions at single-cell resolution in neurodevelopmental, infectious, and neurodegenerative diseases.

Journal: Animal cells and systems

Status: data only

[42736] doi:10.1128/msystems.00381-22 [paper, data]

MetaProClust-MS1: an MS1 Profiling Approach for Large-Scale Microbiome Screening.

Journal: mSystems

Status: data only, 1 dataset cited

[42737] doi:10.1155/2022/7126259 [paper, data]

An Effective Deep Learning Model for Health Monitoring and Detection of COVID-19 Infected Patients: An End-to-End Solution.

Journal: Computational intelligence and neuroscience

Status: data only, 1 dataset cited

[42738] doi:10.3389/fnagi.2022.923673 [paper, repository]

Deep learning of MRI contrast enhancement for mapping cerebral blood volume from single-modal non-contrast scans of aging and Alzheimer's disease brains.

Journal: Frontiers in aging neuroscience

Authors' code: SAIL-GuoLab/DeepContrast_Demo (no license)

Status: code verified, 8 files readable, 2 matches

[42739] doi:10.3389/fnana.2022.915877 [paper, data]

Cytoarchitecture, intersubject variability, and 3D mapping of four new areas of the human anterior prefrontal cortex.

Journal: Frontiers in neuroanatomy

Status: data only, 4 datasets cited

[42740] doi:10.3389/fnhum.2022.892863 [paper, repository]

The steady state visual evoked potential (SSVEP) tracks "sticky" thinking, but not more general mind-wandering.

Journal: Frontiers in human neuroscience

Authors' code: hankyoung1324/FlickeringSART (no license)

Status: code verified, 34 files readable, 13 matches

[42741] doi:10.3389/fnins.2022.958377 [paper, data]

Opioidergic pathways and kisspeptin in the regulation of female reproduction in mammals.

Journal: Frontiers in neuroscience

Status: data only, 1 dataset cited

[42742] doi:10.3389/frai.2022.927676 [paper, repository]

Direct domain adaptation through reciprocal linear transformations.

Journal: Frontiers in artificial intelligence

Authors' code: swag-kaust/dda_pytorch (MIT)

Status: code verified, 14 files readable, 4 matches

[42743] doi:10.3390/ijms23168972 [paper, data]

The Pivotal Role of NF-kB in the Pathogenesis and Therapeutics of Alzheimer's Disease.

Journal: International journal of molecular sciences

Status: data only, 6 datasets cited

[42744] doi:10.7554/elife.78712 [paper, data]

Parallel processing, hierarchical transformations, and sensorimotor associations along the 'where' pathway.

Journal: eLife

Status: data only, 1 dataset cited

Wednesday, 10 August 2022 (32 papers)

[42745] doi:10.1007/s00401-022-02479-4 [paper, data]

Rainwater Charitable Foundation criteria for the neuropathologic diagnosis of progressive supranuclear palsy.

Journal: Acta neuropathologica

Status: data only, 1 dataset cited

[42746] doi:10.1007/s42979-022-01358-9 [paper, data]

A Review on Machine Learning Approaches in Identification of Pediatric Epilepsy.

Journal: SN computer science

Status: data only, 1 dataset cited

[42747] doi:10.1016/j.isci.2022.104907 [paper]

Monitoring extracellular ion and metabolite dynamics with recombinant nanobody-fused biosensors.

Journal: iScience

Status: code on request

[42748] doi:10.1038/s41380-022-01716-2 [paper]

Astrocyte biomarker signatures of amyloid-β and tau pathologies in Alzheimer's disease.

Journal: Molecular psychiatry

Status: code on request

[42749] doi:10.1038/s41380-022-01722-4 [paper]

Behavioural and functional evidence revealing the role of RBFOX1 variation in multiple psychiatric disorders and traits.

Journal: Molecular psychiatry

Status: data only

[42750] doi:10.1038/s41398-022-02013-w [paper]

Obsessive compulsive symptom dimensions are linked to altered white-matter microstructure in a community sample of youth.

Journal: Translational psychiatry

Status: code on request

[42751] doi:10.1038/s41398-022-02099-2 [paper]

Neural and behavioral effects of modification of visual attention in body dysmorphic disorder.

Journal: Translational psychiatry

Status: code on request

[42752] doi:10.1038/s41467-022-32379-w [paper, repository]

Conserved subcortical processing in visuo-vestibular gaze control.

Journal: Nature communications

Authors' code: Zenodo 6628365 (CC-BY-4.0)

Status: code verified

[42753] doi:10.1038/s41467-022-32420-y [paper, repository]

Local molecular and global connectomic contributions to cross-disorder cortical abnormalities.

Journal: Nature communications

Authors' code: LTS5/cmp (BSD-3-Clause), netneurolab/hansen_crossdisorder_vulnerability (no license), Zenodo 6795748 (other-open)

Status: code verified, 80 files readable, 17 matches

[42754] doi:10.1038/s41526-022-00217-4 [paper, data]

Characterization of gene expression profiles in the mouse brain after 35 days of spaceflight mission.

Journal: NPJ microgravity

Status: data only, 1 dataset cited

[42755] doi:10.1038/s41531-022-00366-z [paper, data]

Reduced synaptic activity and dysregulated extracellular matrix pathways in midbrain neurons from Parkinson's disease patients.

Journal: NPJ Parkinson's disease

Status: code on request, 5 datasets cited

[42756] doi:10.1038/s41540-022-00240-x [paper, repository]

Peripheral gene interactions define interpretable clusters of core ASD genes in a network-based investigation of the omnigenic theory.

Journal: NPJ systems biology and applications

Authors' code: peripheralgeneclusters (no license)

Status: code verified

[42757] doi:10.1038/s41598-022-16713-2 [paper, data]

Assessment of brain injury characterization and influence of modeling approaches.

Journal: Scientific reports

Status: data only, 1 dataset cited

[42758] doi:10.1038/s42003-022-03761-7 [paper, repository]

Dual PET-fMRI reveals a link between neuroinflammation, amyloid binding and compensatory task-related brain activity in Alzheimer's disease.

Journal: Communications biology

Authors' code: cvcl.mit.edu/database.htm (no license)

Status: code found, still to be checked

[42759] doi:10.1073/pnas.2115335119 [paper, repository]

Digital computing through randomness and order in neural networks.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: git.u-cergy.fr/neurocyber/digicode (no license)

Status: code verified

[42760] doi:10.1073/pnas.2123146119 [paper, repository]

The neuropeptide landscape of human prefrontal cortex.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: figshare 20442714 (no license)

Status: dead link

[42761] doi:10.1084/jem.20220498 [paper, repository]

Biallelic PAX5 mutations cause hypogammaglobulinemia, sensorimotor deficits, and autism spectrum disorder.

Journal: The Journal of experimental medicine

Authors' code: BaduraLab/DLC_analysis (no license), BaduraLab/MRI-Analysis (no license)

Status: code verified, 26 files readable, 6 matches

[42762] doi:10.1093/lifemedi/lnac027 [paper, data]

Comparative functional RNA editomes of neural differentiation from human PSCs.

Journal: Life medicine

Status: data only, 1 dataset cited

[42763] doi:10.1098/rspb.2022.0878 [paper, data]

Auditory brainstem development of naked mole-rats (&lt;i&gt;Heterocephalus glaber&lt;/i&gt;).

Journal: Proceedings. Biological sciences

Status: data only, 1 dataset cited

[42764] doi:10.1098/rspb.2022.1115 [paper, repository]

Ageing desexualizes the <i>Drosophila</i> brain transcriptome.

Journal: Proceedings. Biological sciences

Authors' code: urbfr20/aging_brain (no license), doi:10.6084/m9.figshare.c.6125280 (no license)

Status: code verified, 2 files readable, 2 matches

[42765] doi:10.1109/ojsp.2022.3198012 [paper, data]

Understanding Harmonic Structures Through Instantaneous Frequency.

Journal: IEEE open journal of signal processing

Status: data only, 1 dataset cited

[42766] doi:10.1111/nan.12842 [paper, data]

The SPTLC1 p.S331 mutation bridges sensory neuropathy and motor neuron disease and has implications for treatment.

Journal: Neuropathology and applied neurobiology

Status: data only, 2 datasets cited

[42767] doi:10.1126/sciadv.abn1441 [paper, data]

Co-option of the piRNA pathway to regulate neural crest specification.

Journal: Science advances

Status: data only, 2 datasets cited

[42768] doi:10.1126/sciadv.abo3555 [paper, repository]

Transfer from spatial education to verbal reasoning and prediction of transfer from learning-related neural change.

Journal: Science advances

Authors' code: OSF kfjr4 (no license)

Status: code verified, 2 files readable

[42769] doi:10.1136/bmjno-2022-000321 [paper, data]

Different AT(N) profiles and clinical progression classified by two different N markers using total tau and neurofilament light chain in cerebrospinal fluid.

Journal: BMJ neurology open

Status: data only, 1 dataset cited

[42770] doi:10.1152/jn.00184.2022 [paper, data]

In vitro longitudinal lumbar spinal cord preparations to study sensory and recurrent motor microcircuits of juvenile mice.

Journal: Journal of neurophysiology

Status: data only, 1 dataset cited

[42771] doi:10.1186/s12906-022-03693-z [paper, data]

The effects of the ethanol extract of Cordia myxa leaves on the cognitive function in mice.

Journal: BMC complementary medicine and therapies

Status: data only, 1 dataset cited

[42772] doi:10.1186/s12987-022-00360-w [paper, repository]

Posthemorrhagic hydrocephalus associates with elevated inflammation and CSF hypersecretion via activation of choroidal transporters.

Journal: Fluids and barriers of the CNS

Authors' code: Sorennorge/posthemorrhagic_hydrocephalus (no license)

Status: code verified, 10 files readable, 2 matches

[42773] doi:10.3389/fcimb.2022.887407 [paper, data]

Curcumin-driven reprogramming of the gut microbiota and metabolome ameliorates motor deficits and neuroinflammation in a mouse model of Parkinson's disease.

Journal: Frontiers in cellular and infection microbiology

Status: data only, 10 datasets cited

[42774] doi:10.3389/fncel.2022.913299 [paper, repository]

Interferon-γ augments GABA release in the developing neocortex <i>via</i> nitric oxide synthase/soluble guanylate cyclase and constrains network activity.

Journal: Frontiers in cellular neuroscience

Authors' code: spyking-circus/spyking-circus (CECILL-2.1), cortex-lab/phy (BSD-3-Clause)

Status: code verified, 269 files readable, 2 matches

[42775] doi:10.3389/fnins.2022.878248 [paper, data]

Using event-related brain potentials to explore the temporal dynamics of decision-making related to information security.

Journal: Frontiers in neuroscience

Status: data only, 1 dataset cited

[42776] doi:10.3390/biology11081200 [paper, data]

Functional Characterization of Three GnRH Isoforms in Small Yellow Croaker <i>Larimichthys polyactis</i> Maintained in Captivity: Special Emphasis on Reproductive Dysfunction.

Journal: Biology

Status: data only, 1 dataset cited

Tuesday, 9 August 2022 (19 papers, 8 on this page)

[42777] doi:10.1038/s41398-022-02073-y [paper, repository]

Maternal depressive symptoms, neonatal white matter, and toddler social-emotional development.

Journal: Translational psychiatry

Authors' code: biomedia.github.io/dhcp-release-notes (no license)

Status: code verified

[42778] doi:10.1038/s41467-022-31961-6 [paper, repository]

Raptor downregulation rescues neuronal phenotypes in mouse models of Tuberous Sclerosis Complex.

Journal: Nature communications

Authors' code: FranklinHolme/spontaneous-activity (GPL-3.0), Zenodo 6614378 (other-open)

Status: code verified, 70 files readable, 6 matches

[42779] doi:10.1038/s41467-022-32319-8 [paper, repository]

Integrated methylome and phenome study of the circulating proteome reveals markers pertinent to brain health.

Journal: Nature communications

Authors' code: Zenodo 6801458 (CC-BY-4.0), DanniGadd/Epigenome-and-phenome-wide-study-of-brain-health-outcomes (no license)

Status: code verified, 33 files readable, 16 matches

[42780] doi:10.1038/s41597-022-01596-9 [paper, data]

Human brain structural connectivity matrices-ready for modelling.

Journal: Scientific data

Status: data only, 3 datasets cited

[42781] doi:10.1073/pnas.2118501119 [paper, repository]

Distinct neural networks derived from galanin-containing nociceptors and neurotensin-expressing pruriceptors.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: chenyan-sh/neuronCounting (no license)

Status: code verified, 3 files readable

[42782] doi:10.1155/2022/2465598 [paper, data]

Comprehensive Multiomics Analysis Reveals Potential Diagnostic and Prognostic Biomarkers in Adrenal Cortical Carcinoma.

Journal: Computational and mathematical methods in medicine

Status: data only, 1 dataset cited

[42783] doi:10.1186/s13063-022-06596-z [paper]

Dual thrombolytic therapy with mutant pro-urokinase and small bolus alteplase for ischemic stroke (DUMAS): study protocol for a multicenter randomized controlled phase II trial.

Journal: Trials

Status: code on request

[42784] doi:10.1186/s13195-022-01043-2 [paper, data]

An explainable self-attention deep neural network for detecting mild cognitive impairment using multi-input digital drawing tasks.

Journal: Alzheimer's research & therapy

Status: data only, 1 dataset cited

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