Every paper, by date: page 192

44,644 papers with a page: 24,189 with their authors' code, 4,955 with code on request, 15,495 with data only. The most recent first, 224 a page. Page 192 of 200: 9 August 2022 to 30 July 2022.

Tuesday, 9 August 2022 (19 papers, 11 on this page)

[42785] doi:10.1242/bio.059431 [paper, data]

Severe cerebellar malformations in mutant mice demonstrate a role for PDGF-C/PDGFRα signalling in cerebellar development.

Journal: Biology open

Status: data only, 1 dataset cited

[42786] doi:10.1371/journal.pbio.3001750 [paper, data]

Human perceptual and metacognitive decision-making rely on distinct brain networks.

Journal: PLoS biology

Status: data only, 1 dataset cited

[42787] doi:10.1371/journal.pcbi.1010426 [paper, repository]

The impact of sparsity in low-rank recurrent neural networks.

Journal: PLoS computational biology

Authors' code: betsyherbert/sparse_low_rank_2022 (no license)

Status: code verified, 10 files readable

[42788] doi:10.18632/aging.204212 [paper, repository]

Heritability of R2* iron in the basal ganglia and cortex.

Journal: Aging

Authors' code: neuroimaging-mug/relaxometry (BSD)

Status: code verified, 37 files readable

[42789] doi:10.3389/fnagi.2022.933019 [paper, data]

Analysis of ROQUIN, Tristetraprolin (TTP), and BDNF/miR-16/TTP regulatory axis in late onset Alzheimer's disease.

Journal: Frontiers in aging neuroscience

Status: data only, 1 dataset cited

[42790] doi:10.3389/fnins.2022.942136 [paper, repository]

Multiple spatial scale mapping of time-resolved brain network reconfiguration during evoked pain in patients with rheumatoid arthritis.

Journal: Frontiers in neuroscience

Authors' code: silviafan/TVC-RA (no license), wiheto/teneto (GPL-3.0), wiheto/netplotbrain (Apache-2.0), Zenodo 4593837 (other-open)

Status: code verified, 203 files readable, 5 matches

[42791] doi:10.3389/fnmol.2022.976910 [paper, data]

Biophysical characterization of light-gated ion channels using planar automated patch clamp.

Journal: Frontiers in molecular neuroscience

Status: data only, 1 dataset cited

[42792] doi:10.3389/fpsyt.2022.941479 [paper, data]

Kynurenine pathway metabolites are associated with gray matter volume in subjects with schizophrenia.

Journal: Frontiers in psychiatry

Status: data only, 1 dataset cited

[42793] doi:10.3389/fpsyt.2022.950328 [paper, data]

EEG-responses to mood induction interact with seasonality and age.

Journal: Frontiers in psychiatry

Status: data only, 2 datasets cited

[42794] doi:10.7554/elife.74207 [paper, data]

Temporal analysis of enhancers during mouse cerebellar development reveals dynamic and novel regulatory functions.

Journal: eLife

Status: data only, 6 datasets cited

[42795] doi:10.7554/elife.76451 [paper, data]

Lactate receptor HCAR1 regulates neurogenesis and microglia activation after neonatal hypoxia-ischemia.

Journal: eLife

Status: data only, 1 dataset cited

Monday, 8 August 2022 (21 papers)

[42796] doi:10.1002/hbm.26018 [paper, repository]

Automated slice-specific z-shimming for functional magnetic resonance imaging of the human spinal cord.

Journal: Human brain mapping

Authors' code: eippertlab/zshim-spinalcord (MIT)

Status: code verified, 45 files readable, 20 matches

[42797] doi:10.1038/s41398-022-02053-2 [paper, repository]

The psychiatric risk gene BRD1 modulates mitochondrial bioenergetics by transcriptional regulation.

Journal: Translational psychiatry

Authors' code: veerlepaternoster/BrainspanCorrelation (no license)

Status: empty repository, 1 file readable

[42798] doi:10.1038/s41398-022-02085-8 [paper]

Structural covariance of the ventral visual stream predicts posttraumatic intrusion and nightmare symptoms: a multivariate data fusion analysis.

Journal: Translational psychiatry

Status: code on request

[42799] doi:10.1038/s41467-022-32247-7 [paper, repository]

A neural circuit for wind-guided olfactory navigation.

Journal: Nature communications

Authors' code: nagellab/AlvarezSalvado_ElementaryTransformations (MIT), nagellab/Mathesonetal2022 (BSD-2-Clause), neuprint.janelia.org (no license), Zenodo 6762105 (other-open)

Status: code verified, 318 files readable, 27 matches

[42800] doi:10.1038/s41559-022-01835-7 [paper, repository]

Mass spectrometry of short peptides reveals common features of metazoan peptidergic neurons.

Journal: Nature ecology & evolution

Authors' code: oist/scrna-counts (no license)

Status: code verified, 2 files readable

[42801] doi:10.1038/s42003-022-03704-2 [paper, repository]

Chromatin compaction precedes apoptosis in developing neurons.

Journal: Communications biology

Authors' code: Zenodo 5603044 (BSD-3-Clause), npeschke/smlm (BSD-3-Clause)

Status: code verified, 30 files readable, 2 matches

[42802] doi:10.1073/pnas.2110416119 [paper, data]

Sex differences in the functional topography of association networks in youth.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 2 datasets cited

[42803] doi:10.1073/pnas.2204754119 [paper, repository]

Regularly occurring bouts of retinal movements suggest an REM sleep-like state in jumping spiders.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: Zenodo 6616655 (CC-BY-4.0)

Status: code verified, 2 files readable

[42804] doi:10.1073/pnas.2206053119 [paper]

Targeted RNA editing in brainstem alleviates respiratory dysfunction in a mouse model of Rett syndrome.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only

[42805] doi:10.1098/rstb.2021.0296 [paper, repository]

Socioecological complexity in primate groups and its cognitive correlates.

Journal: Philosophical transactions of the Royal Society of London. Series B, Biological sciences

Authors' code: doi:10.6084/m9.figshare.c.6060613 (no license)

Status: code found, still to be checked

[42806] doi:10.1098/rstb.2021.0297 [paper, data]

Coevolution of social and communicative complexity in lemurs.

Journal: Philosophical transactions of the Royal Society of London. Series B, Biological sciences

Status: data only, 1 dataset cited

[42807] doi:10.1155/2022/9717599 [paper, data]

Identification of Human Retinal Organoid Cell Differentiation-Related Genes via Single-Cell Sequencing Data Analysis.

Journal: Computational and mathematical methods in medicine

Status: data only, 1 dataset cited

[42808] doi:10.1172/jci.insight.147700 [paper, data]

Age-associated gut microbiota impair hippocampus-dependent memory in a vagus-dependent manner.

Journal: JCI insight

Status: data only, 3 datasets cited

[42809] doi:10.1186/s12877-022-03306-x [paper, repository]

Exploring cognitive and brain oxygenation changes over a 1-year period in physically active individuals with mild cognitive impairment: a longitudinal fNIRS pilot study.

Journal: BMC geriatrics

Authors' code: nirstorm/nirstorm (GPL-3.0)

Status: code verified, 154 files readable, 2 matches

[42810] doi:10.1186/s12888-022-04151-3 [paper, data]

Carbon monoxide (CO) correlates with symptom severity, autoimmunity, and responses to probiotics treatment in a cohort of children with autism spectrum disorder (ASD): a post-hoc analysis of a randomized controlled trial.

Journal: BMC psychiatry

Status: data only, 1 dataset cited

[42811] doi:10.1371/journal.pcbi.1010401 [paper, repository]

Spatiotemporal dynamics of human high gamma discriminate naturalistic behavioral states.

Journal: PLoS computational biology

Authors' code: WahabTNEL/PLOSCompBio (no license)

Status: code verified, 147 files readable, 9 matches

[42812] doi:10.3389/fimmu.2022.955581 [paper, data]

Electroacupuncture attenuates surgical pain-induced delirium-like behavior in mice <i>via</i> remodeling gut microbiota and dendritic spine.

Journal: Frontiers in immunology

Status: data only, 1 dataset cited

[42813] doi:10.3389/fneur.2022.950997 [paper, data]

The impact of age-related hearing loss on structural neuroanatomy: A meta-analysis.

Journal: Frontiers in neurology

Status: data only, 1 dataset cited

[42814] doi:10.3389/fnins.2022.970245 [paper, repository]

Textural features reflecting local activity of the hippocampus improve the diagnosis of Alzheimer's disease and amnestic mild cognitive impairment: A radiomics study based on functional magnetic resonance imaging.

Journal: Frontiers in neuroscience

Authors' code: WenbingLv/Subregional-Radiomics (no license), mvallieres/radiomics (GPL-3.0)

Status: code verified, 406 files readable, 2 matches

[42815] doi:10.3390/genes13081406 [paper, data]

Prediction of Alzheimer's Disease by a Novel Image-Based Representation of Gene Expression.

Journal: Genes

Status: data only, 1 dataset cited

[42816] doi:10.7554/elife.78232 [paper, repository]

Nomograms of human hippocampal volume shifted by polygenic scores.

Journal: eLife

Authors' code: Mo-Janahi/NOMOGRAMS (no license)

Status: dead link

Sunday, 7 August 2022 (1 paper)

[42817] doi:10.1016/j.bpsgos.2022.07.007 [paper, repository]

Atypical Functional Network Properties and Associated Dimensions of Child Psychopathology During Rest and Task Performance.

Journal: Biological psychiatry global open science

Authors' code: VU-BRAINS-lab/Reimann_Network_Metrics (no license)

Status: code verified, 4 files readable

Saturday, 6 August 2022 (10 papers)

[42818] doi:10.1007/s00429-022-02539-1 [paper, repository]

Presence or absence of a prefrontal sulcus is linked to reasoning performance during child development.

Journal: Brain structure & function

Authors' code: cnl-berkeley/stable_projects (no license)

Status: code verified, 130 files readable, 13 matches

[42819] doi:10.1007/s10548-022-00909-w [paper, data]

Exogenous Attention to Emotional Stimuli Presenting Realistic (3D) Looming Motion.

Journal: Brain topography

Status: data only, 1 dataset cited

[42820] doi:10.1007/s10827-022-00827-7 [paper, repository]

Probabilistic solvers enable a straight-forward exploration of numerical uncertainty in neuroscience models.

Journal: Journal of computational neuroscience

Authors' code: berenslab/neuroprobnum (GPL-3.0)

Status: code verified, 48 files readable, 6 matches

[42821] doi:10.1016/j.jaac.2022.05.014 [paper, data]

Systematic Review and Meta-analysis: Task-based fMRI Studies in Youths With Irritability.

Journal: Journal of the American Academy of Child and Adolescent Psychiatry

Status: data only, 1 dataset cited

[42822] doi:10.1016/j.patter.2022.100555 [paper, repository]

A scale-dependent measure of system dimensionality.

Journal: Patterns (New York, N.Y.)

Authors' code: ubcbraincircuits/accelnet-jupyternotebooks-dimensionality (no license)

Status: code verified, 3 files readable

[42823] doi:10.1016/j.xpro.2022.101567 [paper, repository]

High-content analysis of neuronal morphology in human iPSC-derived neurons.

Journal: STAR protocols

Authors' code: Zenodo 6642365 (other-open), StemCellMetab/neurite-outgrowth (no license)

Status: code verified

[42824] doi:10.1038/s41392-022-01134-4 [paper, data]

Stem cell-based therapy for human diseases.

Journal: Signal transduction and targeted therapy

Status: data only, 1 dataset cited

[42825] doi:10.1038/s41467-022-32383-0 [paper, repository]

A cognitive neurogenetic approach to uncovering the structure of executive functions.

Journal: Nature communications

Authors' code: psychelzh/Struct_EF (Apache-2.0)

Status: code verified, 18 files readable, 3 matches

[42826] doi:10.1186/s12974-022-02563-2 [paper, data]

Microglia-specific deletion of histone deacetylase 3 promotes inflammation resolution, white matter integrity, and functional recovery in a mouse model of traumatic brain injury.

Journal: Journal of neuroinflammation

Status: data only, 1 dataset cited

[42827] doi:10.1186/s40478-022-01413-9 [paper, data]

Neuropathology in chronic traumatic encephalopathy: a systematic review of comparative post-mortem histology literature.

Journal: Acta neuropathologica communications

Status: data only, 1 dataset cited

Friday, 5 August 2022 (33 papers)

[42828] doi:10.1002/cam4.5112 [paper, data]

Is extremely low frequency pulsed electromagnetic fields applicable to gliomas? A literature review of the underlying mechanisms and application of extremely low frequency pulsed electromagnetic fields.

Journal: Cancer medicine

Status: data only, 9 datasets cited

[42829] doi:10.1016/j.dcn.2022.101145 [paper, data]

Developmental trajectories of cortical thickness by functional brain network: The roles of pubertal timing and socioeconomic status.

Journal: Developmental cognitive neuroscience

Status: data only, 1 dataset cited

[42830] doi:10.1016/j.isci.2022.104871 [paper]

Intramodal cortical plastic changes after moderate visual impairment in human amblyopia.

Journal: iScience

Status: code on request

[42831] doi:10.1016/j.isci.2022.104877 [paper]

EphA4 targeting agents protect motor neurons from cell death induced by amyotrophic lateral sclerosis -astrocytes.

Journal: iScience

Status: code on request

[42832] doi:10.1016/j.xpro.2022.101602 [paper, repository]

High-content screening of mitochondrial polarization in neural cells derived from human pluripotent stem cells.

Journal: STAR protocols

Authors' code: StemCellMetab/Mitochondrial-membrane-potential (no license), Zenodo 6794537 (other-open)

Status: code verified

[42833] doi:10.1021/acsomega.2c02854 [paper, repository]

Deep Learning Promotes the Screening of Natural Products with Potential Microtubule Inhibition Activity.

Journal: ACS omega

Authors' code: gracewang723/chemprop (MIT)

Status: code verified, 182 files readable, 2 matches

[42834] doi:10.1038/s41398-022-02091-w [paper, data]

CYP2C19 expression modulates affective functioning and hippocampal subiculum volume-a large single-center community-dwelling cohort study.

Journal: Translational psychiatry

Status: data only, 2 datasets cited

[42835] doi:10.1038/s41467-022-32230-2 [paper, repository]

Pregnancy-induced maternal microchimerism shapes neurodevelopment and behavior in mice.

Journal: Nature communications

Authors' code: OpatzLab/HanganuOpatzToolbox (GPL-3.0)

Status: code verified, 596 files readable, 6 matches

[42836] doi:10.1038/s41467-022-32279-z [paper, repository]

Fractional neural sampling as a theory of spatiotemporal probabilistic computations in neural circuits.

Journal: Nature communications

Authors' code: Zenodo 6806437 (other-open), Zenodo 6799461 (other-open), braindynamicsusyd/fhmc (no license), braindynamicsusyd/spikenet (Apache-2.0)

Status: code verified, 605 files readable, 8 matches

[42837] doi:10.1038/s41598-022-17604-2 [paper, repository]

Altered gene expression profiles impair the nervous system development in individuals with 15q13.3 microdeletion.

Journal: Scientific reports

Authors' code: akhilvelluva/15q13.3 (no license)

Status: code verified, 5 files readable

[42838] doi:10.1073/pnas.2106830119 [paper, repository]

Multiple types of navigational information are independently encoded in the population activities of the dentate gyrus neurons.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: KordingLab/Neural_Decoding (BSD-3-Clause), tmurano (no license), tmurano/DG-imaging2 (no license)

Status: code verified, 49 files readable, 1 match

[42839] doi:10.1073/pnas.2116956119 [paper, data]

Postmitotic accumulation of histone variant H3.3 in new cortical neurons establishes neuronal chromatin, transcriptome, and identity.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 1 dataset cited

[42840] doi:10.1073/pnas.2122566119 [paper, repository]

Prevalence and scalable control of localized networks.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: cduan2020/LocalizedControl (GPL-3.0)

Status: code verified, 40 files readable, 7 matches

[42841] doi:10.1073/pnas.2201151119 [paper, repository]

Seizure-induced strengthening of a recurrent excitatory circuit in the dentate gyrus is proconvulsant.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: GoncalvesLab/Nasrallah-et-al-PNAS-2022-Collab (no license)

Status: code verified, 2 files readable

[42842] doi:10.1126/sciadv.abm5500 [paper, data]

G9a dictates neuronal vulnerability to inflammatory stress via transcriptional control of ferroptosis.

Journal: Science advances

Status: data only, 1 dataset cited

[42843] doi:10.1155/2022/6446680 [paper, data]

A Hybrid Approach Based on Deep CNN and Machine Learning Classifiers for the Tumor Segmentation and Classification in Brain MRI.

Journal: Computational and mathematical methods in medicine

Status: data only, 1 dataset cited

[42844] doi:10.1186/s12859-022-04859-9 [paper, repository]

Fused inverse-normal method for integrated differential expression analysis of RNA-seq data.

Journal: BMC bioinformatics

Authors' code: nash5202/FIN_meta_analysis (no license)

Status: code verified, 2 files readable, 1 match

[42845] doi:10.1186/s13195-022-01046-z [paper, data]

Investigating the power of eyes open resting state EEG for assisting in dementia diagnosis.

Journal: Alzheimer's research & therapy

Status: data only, 11 datasets cited

[42846] doi:10.3389/fnagi.2022.835963 [paper]

Panic disorder aging characteristics: The role of telomerase reverse transcriptase gene and brain function.

Journal: Frontiers in aging neuroscience

Status: code on request

[42847] doi:10.3389/fnagi.2022.868342 [paper, repository]

Subject-specific features of excitation/inhibition profiles in neurodegenerative diseases.

Journal: Frontiers in aging neuroscience

Authors' code: BrainModes/fast_tvb (MIT)

Status: code verified, 6 files readable, 3 matches

[42848] doi:10.3389/fnbeh.2022.908454 [paper, data]

Aversive anticipations modulate electrocortical correlates of decision-making and reward reversal learning, but not behavioral performance.

Journal: Frontiers in behavioral neuroscience

Status: data only, 1 dataset cited

[42849] doi:10.3389/fnbeh.2022.947063 [paper, data]

Emotion regulation strategies differentially modulate neural activity across affective prediction stages: An HD-EEG investigation.

Journal: Frontiers in behavioral neuroscience

Status: data only, 1 dataset cited

[42850] doi:10.3389/fnhum.2022.954898 [paper]

Widespread cortical thinning, excessive glutamate and impaired linguistic functioning in schizophrenia: A cluster analytic approach.

Journal: Frontiers in human neuroscience

Status: code on request

[42851] doi:10.3389/fninf.2022.891234 [paper, repository]

A generalized deep learning network for fractional anisotropy reconstruction: Application to epilepsy and multiple sclerosis.

Journal: Frontiers in neuroinformatics

Authors' code: marta-gaviraghi/diffusion_FA (no license)

Status: code verified, 5 files readable, 1 match

[42852] doi:10.3389/fnins.2022.972581 [paper, data]

A spatio-temporal learning-based model for sleep apnea detection using single-lead ECG signals.

Journal: Frontiers in neuroscience

Status: data only, 2 datasets cited

[42853] doi:10.3389/fonc.2022.946253 [paper]

Upregulation of XIAP promotes lung adenocarcinoma brain metastasis by modulating ceRNA network.

Journal: Frontiers in oncology

Status: data only

[42854] doi:10.3390/biomedicines10081897 [paper, data]

Accuracy of EEG Biomarkers in the Detection of Clinical Outcome in Disorders of Consciousness after Severe Acquired Brain Injury: Preliminary Results of a Pilot Study Using a Machine Learning Approach.

Journal: Biomedicines

Status: data only, 1 dataset cited

[42855] doi:10.3390/brainsci12081041 [paper, data]

Maternal Allergic Asthma Induces Prenatal Neuroinflammation.

Journal: Brain sciences

Status: data only, 2 datasets cited

[42856] doi:10.3390/healthcare10081474 [paper, data]

A Web-Based Model to Predict a Neurological Disorder Using ANN.

Journal: Healthcare (Basel, Switzerland)

Status: data only, 1 dataset cited

[42857] doi:10.3390/neurosci3030031 [paper, data]

Encoding of Race Categories by Single Neurons in the Human Brain.

Journal: NeuroSci

Status: data only, 1 dataset cited

[42858] doi:10.3390/s22155860 [paper, data]

A Novel Quick-Response Eigenface Analysis Scheme for Brain-Computer Interfaces.

Journal: Sensors (Basel, Switzerland)

Status: data only, 2 datasets cited

[42859] doi:10.3390/s22155867 [paper, data]

Characterizing and Removing Artifacts Using Dual-Layer EEG during Table Tennis.

Journal: Sensors (Basel, Switzerland)

Status: data only, 1 dataset cited

[42860] doi:10.7554/elife.76836 [paper, repository]

Stereotyped behavioral maturation and rhythmic quiescence in <i>C. elegans</i> embryos.

Journal: eLife

Authors' code: lauziere/MHHT (no license)

Status: code verified, 11 files readable

Thursday, 4 August 2022 (26 papers)

[42861] doi:10.1002/hbm.26037 [paper]

Neuromodulation of the right temporoparietal junction alters amygdala functional connectivity to authority pressure.

Journal: Human brain mapping

Status: code on request

[42862] doi:10.1016/j.biopsych.2022.07.018 [paper, repository]

Neuroanatomical Correlates of Emotion-Related Impulsivity.

Journal: Biological psychiatry

Authors' code: OSF tfkpb (no license)

Status: code verified, 1 file readable, 2 matches

[42863] doi:10.1016/j.jbc.2022.102320 [paper, repository]

The ARSACS disease protein sacsin controls lysosomal positioning and reformation by regulating microtubule dynamics.

Journal: The Journal of biological chemistry

Authors' code: Vincent-Francis/Quantification-LysosomeDistribution (no license)

Status: code verified, 4 files readable

[42864] doi:10.1016/j.ynstr.2022.100475 [paper, data]

An allostatic epigenetic memory on chromatin footprints after double-hit acute stress.

Journal: Neurobiology of stress

Status: data only, 1 dataset cited

[42865] doi:10.1038/s41380-022-01715-3 [paper, data]

Functional connectivity in reward circuitry and symptoms of anhedonia as therapeutic targets in depression with high inflammation: evidence from a dopamine challenge study.

Journal: Molecular psychiatry

Status: data only, 11 datasets cited

[42866] doi:10.1038/s41467-022-32142-1 [paper, repository]

Cingulate-motor circuits update rule representations for sequential choice decisions.

Journal: Nature communications

Authors' code: OSF evc73 (no license), Zenodo 6618578 (other-open), takeuchidaigo/blog-cas-task (Apache)

Status: code verified, 65 files readable, 2 matches

[42867] doi:10.1038/s41525-022-00318-9 [paper, data]

Transcriptomic effects of propranolol and primidone converge on molecular pathways relevant to essential tremor.

Journal: NPJ genomic medicine

Status: code on request, 1 dataset cited

[42868] doi:10.1038/s41592-022-01549-5 [paper, data]

Functional ultrasound localization microscopy reveals brain-wide neurovascular activity on a microscopic scale.

Journal: Nature methods

Status: code on request, 1 dataset cited

[42869] doi:10.1038/s41598-022-16371-4 [paper, repository]

Distributed encoding of curvilinear self-motion across spiral optic flow patterns.

Journal: Scientific reports

Authors' code: owlayton/R-Curvilinear-Path-Encoding (no license)

Status: empty repository, 1 file readable

[42870] doi:10.1038/s41598-022-17452-0 [paper, repository]

Relationships between genome-wide R-loop distribution and classes of recurrent DNA breaks in neural stem/progenitor cells.

Journal: Scientific reports

Authors' code: FelixKrueger/TrimGalore (GPL-3.0)

Status: code verified, 31 files readable

[42871] doi:10.1038/s41598-022-17639-5 [paper, data]

Randomly fluctuating neural connections may implement a consolidation mechanism that explains classic memory laws.

Journal: Scientific reports

Status: data only, 1 dataset cited

[42872] doi:10.1038/s41598-022-17697-9 [paper, data]

Influence of the properties of different graphene-based nanomaterials dispersed in polycaprolactone membranes on astrocytic differentiation.

Journal: Scientific reports

Status: data only, 1 dataset cited

[42873] doi:10.1073/pnas.2116895119 [paper, repository]

A circuit mechanism for independent modulation of excitatory and inhibitory firing rates after sensory deprivation.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: comp-neural-circuits/MD-dynamics (MIT)

Status: code verified, 12 files readable

[42874] doi:10.1073/pnas.2203020119 [paper, repository]

Improving power in functional magnetic resonance imaging by moving beyond cluster-level inference.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: SNeuroble/NBS_benchmarking (no license)

Status: code verified, 51 files readable, 3 matches

[42875] doi:10.1093/braincomms/fcac197 [paper, repository]

Electrophysiological biomarkers of brain function in CDKL5 deficiency disorder.

Journal: Brain communications

Authors' code: mulcaheyp (no license)

Status: code verified

[42876] doi:10.1111/ejn.15781 [paper, data]

Behavioural and electrophysiological analyses of written word processing in spoken and literary Arabic: New insights into the diglossia question.

Journal: The European journal of neuroscience

Status: data only, 1 dataset cited

[42877] doi:10.1111/mec.16633 [paper, repository]

Captivity induces large and population-dependent brain transcriptomic changes in wild-caught cane toads (Rhinella marina).

Journal: Molecular ecology

Authors' code: CaneToadGenomics/Brain-transcriptome-analysis (no license)

Status: code verified, 3 files readable, 2 matches

[42878] doi:10.1177/0271678x221118236 [paper, data]

Unique expression of the atypical mitochondrial subunit NDUFA4L2 in cerebral pericytes fine tunes HIF activity in response to hypoxia.

Journal: Journal of cerebral blood flow and metabolism : official journal of the International Society of Cerebral Blood Flow and Metabolism

Status: data only, 1 dataset cited

[42879] doi:10.1186/s12868-022-00735-7 [paper, data]

High-frequency repetitive transcranial magnetic stimulation (rTMS) protects against ischemic stroke by inhibiting M1 microglia polarization through let-7b-5p/HMGA2/NF-κB signaling pathway.

Journal: BMC neuroscience

Status: data only, 1 dataset cited

[42880] doi:10.1186/s13059-022-02734-7 [paper, repository]

BASS: multi-scale and multi-sample analysis enables accurate cell type clustering and spatial domain detection in spatial transcriptomic studies.

Journal: Genome biology

Authors' code: zhengli09/BASS (GPL-3.0), Zenodo 6814510 (no license)

Status: code verified, 14 files readable, 8 matches

[42881] doi:10.1186/s40708-022-00166-4 [paper, repository]

SmaRT2P: a software for generating and processing smart line recording trajectories for population two-photon calcium imaging.

Journal: Brain informatics

Authors' code: moni90/SmART2P (MIT)

Status: code verified, 393 files readable, 8 matches

[42882] doi:10.1371/journal.pone.0267813 [paper, repository]

Does entropy modulate the prediction of German long-distance verb particles?

Journal: PloS one

Authors' code: OSF h75jm (no license)

Status: code verified, 1 file readable, 1 match

[42883] doi:10.3389/fcvm.2022.964675 [paper, data]

Mechanisms underlying the role of ankyrin-B in cardiac and neurological health and disease.

Journal: Frontiers in cardiovascular medicine

Status: data only, 1 dataset cited

[42884] doi:10.3389/fgene.2022.934154 [paper, data]

Identification of programmed cell death-related gene signature and associated regulatory axis in cerebral ischemia/reperfusion injury.

Journal: Frontiers in genetics

Status: data only, 1 dataset cited

[42885] doi:10.3390/biomedicines10081886 [paper, data]

miRNome and Proteome Profiling of Small Extracellular Vesicles Secreted by Human Glioblastoma Cell Lines and Primary Cancer Stem Cells.

Journal: Biomedicines

Status: data only, 1 dataset cited

[42886] doi:10.7554/elife.70777 [paper, repository]

Expansion and contraction of resource allocation in sensory bottlenecks.

Journal: eLife

Authors' code: lauraredmondson/expansion_contraction_sensory_bottlenecks (CC0-1.0)

Status: code verified, 11 files readable, 1 match

Wednesday, 3 August 2022 (16 papers)

[42887] doi:10.1007/s11064-022-03709-7 [paper, data]

Astrocytes and the Psychiatric Sequelae of COVID-19: What We Learned from the Pandemic.

Journal: Neurochemical research

Status: data only, 2 datasets cited

[42888] doi:10.1016/j.csbj.2022.07.047 [paper, repository]

dsCellNet: A new computational tool to infer cell-cell communication networks in the developing and aging brain.

Journal: Computational and structural biotechnology journal

Authors' code: jiujiezz/tsnad (GNU), songzh523/dsCellNet (no license)

Status: code verified, 12 files readable

[42889] doi:10.1016/j.neuroimage.2022.119533 [paper, repository]

The role of motion in the neural representation of social interactions in the posterior temporal cortex.

Journal: NeuroImage

Authors' code: OSF cxu9g (no license)

Status: code verified, 4 files readable, 4 matches

[42890] doi:10.1038/s41467-022-32219-x [paper, repository]

Genome-wide associations of aortic distensibility suggest causality for aortic aneurysms and brain white matter hyperintensities.

Journal: Nature communications

Authors' code: alkesgroup.broadinstitute.org/bolt-lmm/downloads (no license), JonJala/mtag (GPL-3.0)

Status: code verified, 25 files readable, 3 matches

[42891] doi:10.1038/s41598-022-17049-7 [paper, data]

Physiological measurements in social acceptance of self driving technologies.

Journal: Scientific reports

Status: code on request, 1 dataset cited

[42892] doi:10.1073/pnas.2114758119 [paper, data]

Targeting acetyl-CoA metabolism attenuates the formation of fear memories through reduced activity-dependent histone acetylation.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 2 datasets cited

[42893] doi:10.1073/pnas.2201968119 [paper, data]

A hierarchy of linguistic predictions during natural language comprehension.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 1 dataset cited

[42894] doi:10.1098/rsif.2022.0180 [paper, repository]

Liquid biopsies for early diagnosis of brain tumours: <i>in</i> <i>silico</i> mathematical biomarker modelling.

Journal: Journal of the Royal Society, Interface

Authors' code: JohannaABlee/serum-biomarkers-brain-tumours (no license), doi:10.6084/m9.figshare.c.6098702 (no license)

Status: code verified, 8 files readable, 2 matches

[42895] doi:10.1155/2022/2692301 [paper, repository]

Low-Dose CT Image Denoising Based on Improved DD-Net and Local Filtered Mechanism.

Journal: Computational intelligence and neuroscience

Authors' code: math.sjtu.edu.cn/faculty/xqzhang (no license)

Status: code verified

[42896] doi:10.1186/s11689-022-09454-w [paper]

A framework for characterizing heterogeneity in neurodevelopmental data using latent profile analysis in a sample of children with ADHD.

Journal: Journal of neurodevelopmental disorders

Status: code on request

[42897] doi:10.1186/s41232-022-00209-7 [paper, data]

Targeting microglial autophagic degradation of the NLRP3 inflammasome for identification of thonningianin A in Alzheimer's disease.

Journal: Inflammation and regeneration

Status: data only, 1 dataset cited

[42898] doi:10.1371/journal.pone.0271732 [paper, data]

Neural correlates of perceiving and interpreting engraved prehistoric patterns as human production: Effect of archaeological expertise.

Journal: PloS one

Status: data only, 1 dataset cited

[42899] doi:10.1371/journal.pone.0272087 [paper, repository]

Intracranial recordings show evidence of numerosity tuning in human parietal cortex.

Journal: PloS one

Authors' code: OSF 3w9sg (no license), BAIRR01/BAIR_stimuli (no license), BAIRR01/vistadisp (no license), neurobs.com (no license)

Status: code verified, 241 files readable, 6 matches

[42900] doi:10.3389/fncom.2022.931121 [paper, repository]

Nonlinear optimal control of a mean-field model of neural population dynamics.

Journal: Frontiers in computational neuroscience

Authors' code: lenasal/Optimal_Control_GUI (no license)

Status: code verified, 36 files readable, 7 matches

[42901] doi:10.3390/ijms23158605 [paper, data]

Cloning of the Maternal Effector Gene <i>org</i> and Its Regulation by lncRNA ORG-AS in Chinese Tongue Sole (<i>Cynoglossus semilaevis</i>).

Journal: International journal of molecular sciences

Status: data only, 12 datasets cited

[42902] doi:10.3390/s22155802 [paper, data]

A Comprehensive Review of Endogenous EEG-Based BCIs for Dynamic Device Control.

Journal: Sensors (Basel, Switzerland)

Status: data only, 2 datasets cited

Tuesday, 2 August 2022 (23 papers)

[42903] doi:10.1002/hbm.26030 [paper, data]

Interrelating differences in structural and functional connectivity in the older adult's brain.

Journal: Human brain mapping

Status: data only, 1 dataset cited

[42904] doi:10.1002/hipo.23459 [paper, data]

Prefrontal and hippocampal theta rhythm show anxiolytic-like changes during periaqueductal-elicited "panic" in rats.

Journal: Hippocampus

Status: data only, 1 dataset cited

[42905] doi:10.1016/j.isci.2022.104864 [paper]

NMDA receptor-targeted enrichment of CaMKIIα improves fear memory.

Journal: iScience

Status: code on request

[42906] doi:10.1038/s41398-022-02039-0 [paper, data]

Microdosing with psilocybin mushrooms: a double-blind placebo-controlled study.

Journal: Translational psychiatry

Status: data only, 1 dataset cited

[42907] doi:10.1038/s41537-022-00269-1 [paper, repository]

Associations between aerobic fitness, negative symptoms, cognitive deficits and brain structure in schizophrenia-a cross-sectional study.

Journal: Schizophrenia (Heidelberg, Germany)

Authors' code: OSF tr3nx (no license)

Status: code verified, 5 files readable, 4 matches

[42908] doi:10.1038/s41597-022-01575-0 [paper, repository]

A simultaneous electroencephalography and eye-tracking dataset in elite athletes during alertness and concentration tasks.

Journal: Scientific data

Authors' code: germangh/eeglab_plugin_aar (no license)

Status: code verified, 40 files readable, 1 match

[42909] doi:10.1038/s41598-022-14837-z [paper, repository]

Investigation of memory-enhancing effects of Streptococcus thermophilus EG007 in mice and elucidating molecular and metagenomic characteristics using nanopore sequencing.

Journal: Scientific reports

Authors' code: seoldh/MIrROR (MIT)

Status: code verified, 5 files readable, 2 matches

[42910] doi:10.1038/s41598-022-17325-6 [paper, data]

Mindfulness meditation increases default mode, salience, and central executive network connectivity.

Journal: Scientific reports

Status: data only, 1 dataset cited

[42911] doi:10.1038/s41598-022-17556-7 [paper, repository]

Empirical facts from search for replicable associations between cortical thickness and psychometric variables in healthy adults.

Journal: Scientific reports

Authors' code: shahrzadkh/CTSBB_replicability (no license)

Status: dead link

[42912] doi:10.1073/pnas.2116289119 [paper, data]

Inhibition of the angiotensin II type 2 receptor AT&lt;sub&gt;2&lt;/sub&gt;R is a novel therapeutic strategy for glioblastoma.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 2 datasets cited

[42913] doi:10.1073/pnas.2201039119 [paper, repository]

Number neurons in the nidopallium of young domestic chicks.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: dmkobylkov/number_neurons (no license)

Status: code verified, 3 files readable

[42914] doi:10.1111/psyp.14156 [paper, repository]

Sensory suppression and increased neuromodulation during actions disrupt memory encoding of unpredictable self-initiated stimuli.

Journal: Psychophysiology

Authors' code: OSF 238xe (no license)

Status: code verified, 43 files readable, 12 matches

[42915] doi:10.1186/s12885-022-09808-6 [paper, data]

A role for ceruloplasmin in the control of human glioblastoma cell responses to radiation.

Journal: BMC cancer

Status: data only, 2 datasets cited

[42916] doi:10.1515/mr-2022-0009 [paper, data]

Potential diagnostic biomarkers for schizophrenia.

Journal: Medical review (2021)

Status: data only, 1 dataset cited

[42917] doi:10.15252/embj.2022111118 [paper, repository]

Gruffi: an algorithm for computational removal of stressed cells from brain organoid transcriptomic datasets.

Journal: The EMBO journal

Authors' code: vertesy/Limited.Stress.in.Brain.organoids (GPL-3.0), vertesy (no license)

Status: code verified, 31 files readable, 15 matches

[42918] doi:10.15252/emmm.202215829 [paper, data]

FIBCD1 is an endocytic GAG receptor associated with a novel neurodevelopmental disorder.

Journal: EMBO molecular medicine

Status: data only, 2 datasets cited

[42919] doi:10.3389/fnins.2022.961164 [paper, data]

The characteristics of arterial spin labeling cerebral blood flow in patients with subjective cognitive decline: The Chinese imaging, biomarkers, and lifestyle study.

Journal: Frontiers in neuroscience

Status: data only, 1 dataset cited

[42920] doi:10.3389/fnmol.2022.840966 [paper, data]

Regulation of sensory perception and motor abilities by brain-specific action of chromatin remodeling factor CHD1.

Journal: Frontiers in molecular neuroscience

Status: data only, 1 dataset cited

[42921] doi:10.3389/fnmol.2022.954541 [paper, data]

NF-κB in neurodegenerative diseases: Recent evidence from human genetics.

Journal: Frontiers in molecular neuroscience

Status: data only, 4 datasets cited

[42922] doi:10.3389/fnut.2022.966276 [paper, data]

Identification of ellagic acid and urolithins as natural inhibitors of Aβ_25-35-induced neurotoxicity and the mechanism predication using network pharmacology analysis and molecular docking.

Journal: Frontiers in nutrition

Status: data only, 1 dataset cited

[42923] doi:10.3390/s22155771 [paper, repository]

Subject-Dependent Artifact Removal for Enhancing Motor Imagery Classifier Performance under Poor Skills.

Journal: Sensors (Basel, Switzerland)

Authors' code: mtobonh/SD-AR (no license)

Status: code verified, 7 files readable, 2 matches

[42924] doi:10.3758/s13415-022-01028-6 [paper, repository]

The influence of error detection and error significance on neural and behavioral correlates of error processing in a complex choice task.

Journal: Cognitive, affective & behavioral neuroscience

Authors' code: OSF qmavy (no license)

Status: code verified, 8 files readable, 1 match

[42925] doi:10.7554/elife.68541 [paper, repository]

Focal seizures are organized by feedback between neural activity and ion concentration changes.

Journal: eLife

Authors' code: modeldb:267499 (no license)

Status: code found, still to be checked

Monday, 1 August 2022 (62 papers)

[42926] doi:10.1001/jamaneurol.2022.1634 [paper, data]

Association of APOE Genotypes and Chronic Traumatic Encephalopathy.

Journal: JAMA neurology

Status: data only, 3 datasets cited

[42927] doi:10.1002/hbm.26007 [paper, repository]

Transcranial direct current stimulation to modulate fMRI drug cue reactivity in methamphetamine users: A randomized clinical trial.

Journal: Human brain mapping

Authors' code: rkuplicki/LIBR_FDCR_Dynamic (no license)

Status: code verified, 5 files readable, 1 match

[42928] doi:10.1002/hipo.23457 [paper, data]

The fibro- and cyto-architecture demarcating the border between the dentate gyrus and CA3 in sheep (Ovis aries) and domestic pig (Sus scrofa domesticus).

Journal: Hippocampus

Status: data only, 4 datasets cited

[42929] doi:10.1007/s10827-023-00852-0 [paper, repository]

Hierarchical processing underpins competition in tactile perceptual bistability.

Journal: Journal of computational neuroscience

Authors' code: farzaneh-darki/Darki2022-hierarchical (no license)

Status: dead link

[42930] doi:10.1016/j.cell.2022.07.024 [paper, repository]

Non-canonical odor coding in the mosquito.

Journal: Cell

Authors' code: campbio/celda (other), MarioniLab/DropletUtils (no license), chris-mcginnis-ucsf/DoubletFinder (no license), immunogenomics/harmony (no license), satijalab/sctransform (GPL-3.0), VosshallLab/Younger_Herre_Vosshall2020 (no license)

Status: code verified, 292 files readable, 21 matches

[42931] doi:10.1016/j.celrep.2022.111152 [paper, repository]

Emergence of sex-specific transcriptomes in a sexually dimorphic brain nucleus.

Journal: Cell reports

Authors' code: Zenodo 6639637 (other-open), stephens999/ashr (GPL-3.0), Zenodo 6677897 (other-open), Zenodo 6678104 (other-open), samifriedrich/zebrafinchra (MIT), velholab/monte-carlo-simulations-and-zscore-calculation (no license), velholab/query-ncbi-promoter-sequences- (no license)

Status: code verified, 76 files readable, 16 matches

[42932] doi:10.1016/j.celrep.2022.111176 [paper, repository]

Single-neuron models linking electrophysiology, morphology, and transcriptomics across cortical cell types.

Journal: Cell reports

Authors' code: AllenInstitute/All-active-Manuscript (BSD-2-Clause), Zenodo 1283474 (other-open), AllenInstitute/All-active-Workflow (BSD-2-Clause), bluebrain/efel (GPL-3.0)

Status: code verified, 408 files readable, 23 matches

[42933] doi:10.1016/j.celrep.2022.111202 [paper, repository]

Visual-area-specific tonic modulation of GABA release by endocannabinoids sets the activity and coordination of neocortical principal neurons.

Journal: Cell reports

Authors' code: Zenodo 6795090 (other-open), yzerlaut/CB1_ntwk_modeling (no license)

Status: code verified, 40 files readable, 5 matches

[42934] doi:10.1016/j.celrep.2022.111209 [paper, repository]

Microglia contribute to the postnatal development of cortical somatostatin-positive inhibitory cells and to whisker-evoked cortical activity.

Journal: Cell reports

Authors' code: Zenodo 6862093 (other-open), Zenodo 6861757 (other-open), Zenodo 6863632 (other-open), argunsah/punctadensity (GPL-3.0), argunsah/colocanalysis (GPL-3.0), lorenzogesuita/gesuita_et_al_2022 (CC0-1.0)

Status: code verified, 121 files readable, 5 matches

[42935] doi:10.1016/j.celrep.2022.111232 [paper, repository]

Inhibitory conductance controls place field dynamics in the hippocampus.

Journal: Cell reports

Authors' code: valegarman/HippoCookBook (no license), Zenodo 6902376 (other-open), pridalab/lcn-hippomodel (no license), Zenodo 6902418 (other-open), valegarman/HippoPlayground (no license), brendonw1/KilosortWrapper (no license), cortex-lab/KiloSort (GPL-2.0), petersenpeter/phy-plugins (GPL-3.0)

Status: code verified, 2,152 files readable, 16 matches

[42936] doi:10.1016/j.celrep.2022.111239 [paper]

Central FGF21 production regulates memory but not peripheral metabolism.

Journal: Cell reports

Status: code on request

[42937] doi:10.1016/j.celrep.2022.111262 [paper]

The Bruce effect: Representational stability and memory formation in the accessory olfactory bulb of the female mouse.

Journal: Cell reports

Status: code on request

[42938] doi:10.1016/j.celrep.2022.111268 [paper]

ABL kinases regulate translation in HER2+ cells through Y-box-binding protein 1 to facilitate colonization of the brain.

Journal: Cell reports

Status: code on request

[42939] doi:10.1016/j.celrep.2022.111278 [paper]

DEPDC5-dependent mTORC1 signaling mechanisms are critical for the anti-seizure effects of acute fasting.

Journal: Cell reports

Status: code on request

[42940] doi:10.1016/j.celrep.2022.111283 [paper, repository]

Quantification of spatial subclonal interactions enhancing the invasive phenotype of pediatric glioma.

Journal: Cell reports

Authors' code: Zenodo 6835901 (other-open), haidertari/tarietal-2022-subclonalinteractions (GPL-3.0)

Status: code verified, 56 files readable

[42941] doi:10.1016/j.celrep.2022.111293 [paper]

RBM45 is an m⁶A-binding protein that affects neuronal differentiation and the splicing of a subset of mRNAs.

Journal: Cell reports

Status: code on request

[42942] doi:10.1016/j.isci.2022.104833 [paper, data]

Elevation of neural injury markers in patients with neurologic sequelae after hospitalization for SARS-CoV-2 infection.

Journal: iScience

Status: data only, 1 dataset cited

[42943] doi:10.1016/j.isci.2022.104874 [paper]

The <i>Drosophila</i> microRNA bantam regulates excitability in adult mushroom body output neurons to promote early night sleep.

Journal: iScience

Status: code on request

[42944] doi:10.1016/j.nicl.2022.103139 [paper, repository]

Altered brain network topology in children with auditory processing disorder: A resting-state multi-echo fMRI study.

Journal: NeuroImage. Clinical

Authors' code: omidvarnia/Dynamic_brain_connectivity_analysis (no license)

Status: code verified, 63 files readable, 6 matches

[42945] doi:10.1038/s41378-022-00406-x [paper, repository]

Deposition chamber technology as building blocks for a standardized brain-on-chip framework.

Journal: Microsystems & nanoengineering

Authors' code: designer.netri.fr (no license)

Status: code found, still to be checked

[42946] doi:10.1038/s41467-022-32059-9 [paper]

Adaptive wireless millirobotic locomotion into distal vasculature.

Journal: Nature communications

Status: code on request

[42947] doi:10.1038/s41467-022-32209-z [paper, repository]

A conflict between spatial selection and evidence accumulation in area LIP.

Journal: Nature communications

Authors' code: Zenodo 6604002 (CC-BY-4.0)

Status: code verified, 21 files readable, 3 matches

[42948] doi:10.1038/s41593-022-01123-4 [paper, repository]

Temporally divergent regulatory mechanisms govern neuronal diversification and maturation in the mouse and marmoset neocortex.

Journal: Nature neuroscience

Authors' code: bxlab/bx-python (MIT), bioconductor.org/packages/release (no license)

Status: code verified, 241 files readable, 1 match

[42949] doi:10.1038/s41598-022-17310-z [paper]

Profiling of gene expression in the brain associated with anxiety-related behaviors in the chronic phase following cranial irradiation.

Journal: Scientific reports

Status: data only

[42950] doi:10.1038/s41598-022-17458-8 [paper, data]

Perception is rich and probabilistic.

Journal: Scientific reports

Status: data only, 1 dataset cited

[42951] doi:10.1080/15548627.2022.2105562 [paper, data]

SDC1-dependent TGM2 determines radiosensitivity in glioblastoma by coordinating EPG5-mediated fusion of autophagosomes with lysosomes.

Journal: Autophagy

Status: data only, 1 dataset cited

[42952] doi:10.1093/ajcn/nqac107 [paper, data]

Vitamin D and brain health: an observational and Mendelian randomization study.

Journal: The American journal of clinical nutrition

Status: code on request, 1 dataset cited

[42953] doi:10.1093/brain/awac083 [paper, repository]

Microglial large extracellular vesicles propagate early synaptic dysfunction in Alzheimer's disease.

Journal: Brain : a journal of neurology

Authors' code: figshare 12808211 (GPL 3.0+)

Status: code verified

[42954] doi:10.1093/brain/awac102 [paper, data]

Neurodegenerative phagocytes mediate synaptic stripping in Neuro-HIV.

Journal: Brain : a journal of neurology

Status: data only, 1 dataset cited

[42955] doi:10.1093/cercor/bhab429 [paper, repository]

Multiplex Connectome Changes across the Alzheimer's Disease Spectrum Using Gray Matter and Amyloid Data.

Journal: Cerebral cortex (New York, N.Y. : 1991)

Authors' code: braph.org (no license)

Status: code verified

[42956] doi:10.1093/cercor/bhab434 [paper, repository]

The Representation of Time Windows in Primate Auditory Cortex.

Journal: Cerebral cortex (New York, N.Y. : 1991)

Authors' code: pvconv.sourceforge.net (no license), OSF anq4p (no license), OSF d2bz7 (no license)

Status: code verified, 8 files readable, 9 matches

[42957] doi:10.1093/g3journal/jkac159 [paper, data]

Premature translation of the Drosophila zygotic genome activator Zelda is not sufficient to precociously activate gene expression.

Journal: G3 (Bethesda, Md.)

Status: data only, 1 dataset cited

[42958] doi:10.1093/gbe/evac108 [paper, repository]

Differentially Active and Conserved Neural Enhancers Define Two Forms of Adaptive Noncoding Evolution in Humans.

Journal: Genome biology and evolution

Authors' code: jpizzollo/TestForPositiveSelection (no license)

Status: code verified, 2 files readable

[42959] doi:10.1093/gigascience/giac082 [paper, repository]

Statistical quantification of confounding bias in machine learning models.

Journal: GigaScience

Authors' code: pni-lab/mlconfound-manuscript (GPL-3.0)

Status: code verified, 25 files readable, 1 match

[42960] doi:10.1093/hmg/ddac056 [paper, data]

L1 chimeric transcripts are expressed in healthy brain and their deregulation in glioma follows that of their host locus.

Journal: Human molecular genetics

Status: data only, 8 datasets cited

[42961] doi:10.1093/nar/gkac320 [paper, repository]

Cell type identification in spatial transcriptomics data can be improved by leveraging cell-type-informative paired tissue images using a Bayesian probabilistic model.

Journal: Nucleic acids research

Authors' code: Irrationone/splatter (GPL-3.0), asifzubair/GIST (GPL-3.0), asifzubair/GIST-paper (no license), almaan/stereoscope (MIT)

Status: code verified, 142 files readable, 15 matches

[42962] doi:10.1093/nar/gkac672 [paper, repository]

Nonlinear manipulation and analysis of large DNA datasets.

Journal: Nucleic acids research

Authors' code: Sarah0802/Biased-Competition-NADEL (no license)

Status: code verified, 22 files readable

[42963] doi:10.1093/neuonc/noac030 [paper, data]

Serial H3K27M cell-free tumor DNA (cf-tDNA) tracking predicts ONC201 treatment response and progression in diffuse midline glioma.

Journal: Neuro-oncology

Status: data only, 4 datasets cited

[42964] doi:10.1093/scan/nsab127 [paper]

Altered functional connectivity density and couplings in postpartum depression with and without anxiety.

Journal: Social cognitive and affective neuroscience

Status: code on request

[42965] doi:10.1093/sleep/zsac106 [paper]

Brain states in freely behaving marmosets.

Journal: Sleep

Status: code on request

[42966] doi:10.1093/sysbio/syab079 [paper, repository]

Analyzing Disparity and Rates of Morphological Evolution with Model-Based Phylogenetic Comparative Methods.

Journal: Systematic biology

Authors' code: GHBolstad/evolvability (no license), cran.r-project.org/package=slouch (no license)

Status: code verified, 22 files readable, 3 matches

[42967] doi:10.1097/md.0000000000030172 [paper, data]

Research hotspots and trends of multimodality MRI on vascular cognitive impairment in recent 12 years: A bibliometric analysis.

Journal: Medicine

Status: data only, 1 dataset cited

[42968] doi:10.1097/md.0000000000030194 [paper, data]

A network pharmacology approach to identify the mechanisms and molecular targets of curcumin against Alzheimer disease.

Journal: Medicine

Status: data only, 3 datasets cited

[42969] doi:10.1155/2022/9541115 [paper]

Jellyfish Search-Optimized Deep Learning for Compressive Strength Prediction in Images of Ready-Mixed Concrete.

Journal: Computational intelligence and neuroscience

Status: code on request

[42970] doi:10.1182/blood.2022015970 [paper, data]

The multifaceted role of platelets in mediating brain function.

Journal: Blood

Status: data only, 1 dataset cited

[42971] doi:10.1186/s12920-022-01323-8 [paper, data]

Identifying genetic markers enriched by brain imaging endophenotypes in Alzheimer's disease.

Journal: BMC medical genomics

Status: data only, 1 dataset cited

[42972] doi:10.1186/s13063-022-06190-3 [paper]

Noradrenergic Add-on Therapy with Extended-Release Guanfacine in Alzheimer's Disease (NorAD): study protocol for a randomised clinical trial and COVID-19 amendments.

Journal: Trials

Status: code on request

[42973] doi:10.12998/wjcc.v10.i22.7749 [paper]

Serum ferritin levels in children with attention deficit hyperactivity disorder and tic disorder.

Journal: World journal of clinical cases

Status: code on request

[42974] doi:10.1371/journal.pbio.3001735 [paper, repository]

Human electromagnetic and haemodynamic networks systematically converge in unimodal cortex and diverge in transmodal cortex.

Journal: PLoS biology

Authors' code: netneurolab/shafiei_megfmrimapping (BSD-3-Clause), Zenodo 6728338 (CC-BY-4.0)

Status: code verified, 21 files readable, 15 matches

[42975] doi:10.1371/journal.pcbi.1010334 [paper, repository]

Amyloid pathology disrupts gliotransmitter release in astrocytes.

Journal: PLoS computational biology

Authors' code: anupgp/astron (MIT)

Status: code verified, 278 files readable, 8 matches

[42976] doi:10.1371/journal.pcbi.1010363 [paper, repository]

A framework for macroscopic phase-resetting curves for generalised spiking neural networks.

Journal: PLoS computational biology

Authors' code: supp:PMC9371324/pcbi.1010363.s001.zip (no license)

Status: code verified, 4 files readable

[42977] doi:10.15252/msb.202110473 [paper, repository]

Comparative chromatin accessibility upon BDNF stimulation delineates neuronal regulatory elements.

Journal: Molecular systems biology

Authors' code: git.embl.de/rio/neuronal_activity_bdnf (no license)

Status: dead link

[42978] doi:10.2147/bctt.s372083 [paper, data]

miR-623 Targets Metalloproteinase-1 and Attenuates Extravasation of Brain Metastatic Triple-Negative Breast Cancer Cells.

Journal: Breast cancer (Dove Medical Press)

Status: data only, 1 dataset cited

[42979] doi:10.26508/lsa.202101205 [paper, data]

Chr21 protein-protein interactions: enrichment in proteins involved in intellectual disability, autism, and late-onset Alzheimer's disease.

Journal: Life science alliance

Status: data only, 3 datasets cited

[42980] doi:10.3233/jpd-223351 [paper, repository]

Towards a Visualizable, De-identified Synthetic Biomarker of Human Movement Disorders.

Journal: Journal of Parkinson's disease

Authors' code: facebookresearch/VideoPose3D (CC-BY-NC-4.0), mkocabas/VIBE (other), facebookresearch/detectron2 (Apache-2.0)

Status: code verified, 617 files readable

[42981] doi:10.3389/fnins.2022.744737 [paper, repository]

Assessment of instantaneous cognitive load imposed by educational multimedia using electroencephalography signals.

Journal: Frontiers in neuroscience

Authors' code: K-Hun/multimedia-learning-hci (no license)

Status: code verified, 9 files readable

[42982] doi:10.3389/fnins.2022.861668 [paper, repository]

Tremor evaluation using smartphone accelerometry in standardized settings.

Journal: Frontiers in neuroscience

Authors' code: NRC-Lund/tremordetector (MIT)

Status: code verified, 3 files readable

[42983] doi:10.3389/fnins.2022.935120 [paper, repository]

The bottom-up information transfer process and top-down attention control underlying tonal working memory.

Journal: Frontiers in neuroscience

Authors' code: pan.baidu.com/s/1yzuhuyelrlljllpuduyava (no license)

Status: code verified

[42984] doi:10.3389/fnins.2022.967116 [paper, data]

Efficient graph convolutional networks for seizure prediction using scalp EEG.

Journal: Frontiers in neuroscience

Status: data only, 1 dataset cited

[42985] doi:10.3389/fresc.2022.929431 [paper, data]

Enhancing touch sensibility by sensory retraining in a sensory discrimination task <i>via</i> haptic rendering.

Journal: Frontiers in rehabilitation sciences

Status: data only, 2 datasets cited

[42986] doi:10.3390/brainsci12081022 [paper, data]

Integrated Analysis of Cortex Single-Cell Transcriptome and Serum Proteome Reveals the Novel Biomarkers in Alzheimer's Disease.

Journal: Brain sciences

Status: data only, 1 dataset cited

[42987] doi:10.3390/cells11152365 [paper]

Identification of Biomarkers Related to M2 Macrophage Infiltration in Alzheimer's Disease.

Journal: Cells

Status: data only

Sunday, 31 July 2022 (3 papers)

[42988] doi:10.1016/j.jlr.2022.100260 [paper, data]

The cholesteryl ester transfer protein (CETP) raises cholesterol levels in the brain.

Journal: Journal of lipid research

Status: data only, 1 dataset cited

[42989] doi:10.3390/diagnostics12081850 [paper, data]

Convolutional Neural Network Techniques for Brain Tumor Classification (from 2015 to 2022): Review, Challenges, and Future Perspectives.

Journal: Diagnostics (Basel, Switzerland)

Status: data only, 1 dataset cited

[42990] doi:10.3390/ijms23158493 [paper, data]

Tryptophan Metabolism in Depression: A Narrative Review with a Focus on Serotonin and Kynurenine Pathways.

Journal: International journal of molecular sciences

Status: data only, 8 datasets cited

Saturday, 30 July 2022 (20 papers, 18 on this page)

[42991] doi:10.1002/hbm.26035 [paper, data]

Asymmetric generalizability of multimodal brain-behavior associations across age-groups.

Journal: Human brain mapping

Status: data only, 1 dataset cited

[42992] doi:10.1002/hbm.26036 [paper, data]

Mirror neuron brain regions contribute to identifying actions, but not intentions.

Journal: Human brain mapping

Status: data only, 1 dataset cited

[42993] doi:10.1007/s00406-022-01462-0 [paper, data]

Real-time fMRI neurofeedback compared to cognitive behavioral therapy in a pilot study for the treatment of mild and moderate depression.

Journal: European archives of psychiatry and clinical neuroscience

Status: code on request, 2 datasets cited

[42994] doi:10.1016/j.dcn.2022.101142 [paper, repository]

Positive risk taking and neural sensitivity to risky decision making in adolescence.

Journal: Developmental cognitive neuroscience

Authors' code: OSF t9yuv (no license)

Status: empty repository

[42995] doi:10.1016/j.neunet.2022.07.026 [paper, repository]

Three approaches to facilitate invariant neurons and generalization to out-of-distribution orientations and illuminations.

Journal: Neural networks : the official journal of the International Neural Network Society

Authors' code: Faruk-Ahmed/predictive_group_invariance (no license), FujitsuResearch/three-approaches-ood (BSD-3-Clause)

Status: code verified, 29 files readable, 1 match

[42996] doi:10.1016/j.neuroimage.2022.119509 [paper, repository]

A comparison of methods to harmonize cortical thickness measurements across scanners and sites.

Journal: NeuroImage

Authors' code: rpomponio/neuroHarmonize (MIT)

Status: code verified, 12 files readable, 1 match

[42997] doi:10.1016/j.neuroimage.2022.119511 [paper]

Covariance-based vs. correlation-based functional connectivity dissociates healthy aging from Alzheimer disease.

Journal: NeuroImage

Status: code on request

[42998] doi:10.1038/s41467-022-32210-6 [paper, repository]

Evidence accumulation occurs locally in the parietal cortex.

Journal: Nature communications

Authors' code: zwzhangi36/sensory-evidence_transformation_in_LIP (MIT)

Status: code verified, 88 files readable, 1 match

[42999] doi:10.1038/s41597-022-01569-y [paper, repository]

Single cell transcriptome sequencing of inspiratory neurons of the preBötzinger complex in neonatal mice.

Journal: Scientific data

Authors' code: prajkta9/bioinformatics-scRNA-seq (no license), doi:10.6084/m9.figshare.c.6097332.v1 (no license)

Status: code verified, 4 files readable, 2 matches

[43000] doi:10.1038/s41598-022-14450-0 [paper, repository]

Intravital 3D visualization and segmentation of murine neural networks at micron resolution.

Journal: Scientific reports

Authors' code: lautman/OCT2BrainSegmentation (no license)

Status: code verified, 4 files readable

[43001] doi:10.1038/s41598-022-16407-9 [paper]

Stochastic consolidation of lifelong memory.

Journal: Scientific reports

Status: code on request

[43002] doi:10.1038/s41598-022-16545-0 [paper, data]

Intervention is a better predictor of tDCS mind-wandering effects than subjective beliefs about experimental results.

Journal: Scientific reports

Status: data only, 1 dataset cited

[43003] doi:10.1038/s41598-022-17055-9 [paper, repository]

Stimulation with acoustic white noise enhances motor excitability and sensorimotor integration.

Journal: Scientific reports

Authors' code: giorgioarcara/meg-lab-sc-code (MIT)

Status: code verified, 107 files readable

[43004] doi:10.1186/s12911-022-01946-y [paper, repository]

Automatic text classification of actionable radiology reports of tinnitus patients using bidirectional encoder representations from transformer (BERT) and in-domain pre-training (IDPT).

Journal: BMC medical informatics and decision making

Authors' code: currylee92/BERT (no license)

Status: code verified, 1 file readable

[43005] doi:10.18632/aging.204196 [paper, repository]

Aging the brain: multi-region methylation principal component based clock in the context of Alzheimer's disease.

Journal: Aging

Authors' code: MorganLevineLab/calcPCBrainAge (no license)

Status: code verified, 6 files readable, 2 matches

[43006] doi:10.3390/brainsci12081012 [paper, data]

Elevated Hexose-6-Phosphate Dehydrogenase Regulated by OSMR-AS1/hsa-miR-516b-5p Axis Correlates with Poor Prognosis and Dendritic Cells Infiltration of Glioblastoma.

Journal: Brain sciences

Status: data only, 1 dataset cited

[43007] doi:10.3390/genes13081371 [paper, data]

Prefrontal Cortex Response to Prenatal Insult and Postnatal Opioid Exposure.

Journal: Genes

Status: data only, 1 dataset cited

[43008] doi:10.3390/metabo12080714 [paper, data]

Simultaneous Quantification of Steroid Hormones Using hrLC-MS in Endocrine Tissues of Male Rats and Human Samples.

Journal: Metabolites

Status: data only, 1 dataset cited

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