Every paper, by date: page 193

44,644 papers with a page: 24,189 with their authors' code, 4,955 with code on request, 15,495 with data only. The most recent first, 224 a page. Page 193 of 200: 30 July 2022 to 20 July 2022.

Saturday, 30 July 2022 (20 papers, 2 on this page)

[43009] doi:10.3390/pharmaceutics14081595 [paper, data]

Methylphenidate Analogues as a New Class of Potential Disease-Modifying Agents for Parkinson's Disease: Evidence from Cell Models and Alpha-Synuclein Transgenic Mice.

Journal: Pharmaceutics

Status: data only, 1 dataset cited

[43010] doi:10.3390/s22155708 [paper, repository]

Evaluation of Spatiotemporal Patterns of the Spinal Muscle Coordination Output during Walking in the Exoskeleton.

Journal: Sensors (Basel, Switzerland)

Authors' code: dzhvansky/pepato (GPL-3.0)

Status: code verified, 68 files readable, 6 matches

Friday, 29 July 2022 (27 papers)

[43011] doi:10.1007/s00018-022-04494-w [paper, data]

NPC transplantation rescues sci-driven cAMP/EPAC2 alterations, leading to neuroprotection and microglial modulation.

Journal: Cellular and molecular life sciences : CMLS

Status: data only, 1 dataset cited

[43012] doi:10.1007/s00125-022-05743-0 [paper, repository]

Evaluating the efficacy and mechanism of metformin targets on reducing Alzheimer's disease risk in the general population: a Mendelian randomisation study.

Journal: Diabetologia

Authors' code: MRCIEU/TwoSampleMR (other)

Status: code verified, 73 files readable, 2 matches

[43013] doi:10.1007/s00429-022-02529-3 [paper, data]

Characterization of the angular gyrus in an older adult population: a multimodal multilevel approach.

Journal: Brain structure & function

Status: data only, 1 dataset cited

[43014] doi:10.1007/s11064-022-03701-1 [paper, data]

Sex Differentially Alters Secretion of Brain Extracellular Vesicles During Aging: A Potential Mechanism for Maintaining Brain Homeostasis.

Journal: Neurochemical research

Status: data only, 13 datasets cited

[43015] doi:10.1016/j.neuroimage.2022.119526 [paper, repository]

A dynamic gradient architecture generates brain activity states.

Journal: NeuroImage

Authors' code: jbrown81/gradients (no license)

Status: code verified, 10 files readable, 5 matches

[43016] doi:10.1016/j.nicl.2022.103134 [paper, repository]

Integrating multiple brain imaging modalities does not boost prediction of subclinical atherosclerosis in midlife adults.

Journal: NeuroImage. Clinical

Authors' code: CoAxLab/multimodal-imt (no license)

Status: code verified, 5 files readable, 10 matches

[43017] doi:10.1016/j.nicl.2022.103136 [paper, repository]

Surface-based abnormalities of the executive frontostriatial circuit in pediatric TBI.

Journal: NeuroImage. Clinical

Authors' code: Jfortin1/ComBatHarmonization (no license)

Status: code verified, 17 files readable

[43018] doi:10.1017/s2633903x2200006x [paper, repository]

Automatic classification and neurotransmitter prediction of synapses in electron microscopy.

Journal: Biological imaging

Authors' code: s-shailja/Ciona_EM (no license)

Status: code verified, 4 files readable

[43019] doi:10.1038/s41467-022-31960-7 [paper, repository]

Transcription factor network analysis identifies REST/NRSF as an intrinsic regulator of CNS regeneration in mice.

Journal: Nature communications

Authors' code: bioconductor.org/packages/release (no license), encodeproject.org/software/mfinder (no license), icnn/RNAseq-PIPELINE (no license), loosolab/TOBIAS (MIT)

Status: code verified, 58 files readable, 3 matches

[43020] doi:10.1038/s41467-022-32115-4 [paper, repository]

Functional neuronal circuitry and oscillatory dynamics in human brain organoids.

Journal: Nature communications

Authors' code: CCutts/Detecting_pairwise_correlations_in_spike_trains (no license), Timothysit/organoids (no license), KosikOrganoid/Intrinsic-activity-code (no license)

Status: code verified, 154 files readable, 7 matches

[43021] doi:10.1038/s41467-022-32199-y [paper, repository]

Orbitofrontal cortex contributes to the comparison of values underlying economic choices.

Journal: Nature communications

Authors' code: PadoaSchioppaLab (no license)

Status: code verified

[43022] doi:10.1038/s41597-022-01560-7 [paper, repository]

The University of Pennsylvania glioblastoma (UPenn-GBM) cohort: advanced MRI, clinical, genomics, & radiomics.

Journal: Scientific data

Authors' code: pyushkevich/greedy (Apache-2.0), CBICA/BrainMaGe (BSD-3-Clause), CBICA/CaPTk (other), CBICA/FeTS (no license)

Status: code verified, 1,051 files readable, 11 matches

[43023] doi:10.1038/s41598-022-15830-2 [paper, data]

A deep learning framework for epileptic seizure detection based on neonatal EEG signals.

Journal: Scientific reports

Status: data only, 1 dataset cited

[43024] doi:10.1038/s41598-022-17304-x [paper, repository]

Altered EEG variability on different time scales in participants with autism spectrum disorder: an exploratory study.

Journal: Scientific reports

Authors' code: LukeTheHecker/asd-variability (no license)

Status: code verified, 19 files readable, 3 matches

[43025] doi:10.1097/md.0000000000029544 [paper, data]

Molecular and clinical features of a potential immunotherapy target ELK3 in glioma.

Journal: Medicine

Status: data only, 1 dataset cited

[43026] doi:10.1186/s12864-022-08780-6 [paper, repository]

In search of the Aplysia immunome: an in silico study.

Journal: BMC genomics

Authors' code: Nicholas-Kron/Aplysia_Immunome (MIT)

Status: code verified, 11 files readable, 33 matches

[43027] doi:10.12688/f1000research.108008.2 [paper, repository]

The Neuroimaging Data Model Linear Regression Tool (nidm_linreg): PyNIDM Project.

Journal: F1000Research

Authors' code: incf-nidash/pynidm (Apache-2.0), Zenodo 4635287 (other-open), dbkeator/simple2_NIDM_examples (no license)

Status: code verified, 191 files readable, 6 matches

[43028] doi:10.1371/journal.pone.0271659 [paper, repository]

The rubber hand illusion is accompanied by a distributed reduction of alpha and beta power in the EEG.

Journal: PloS one

Authors' code: supp:PMC9337658/pone.0271659.s001.zip (no license)

Status: code verified, 5 files readable, 4 matches

[43029] doi:10.3389/fnagi.2022.915009 [paper, repository]

Automatic segmentation of white matter hyperintensities in routine clinical brain MRI by 2D VB-Net: A large-scale study.

Journal: Frontiers in aging neuroscience

Authors' code: simonsf/wmh-segmentation (no license)

Status: code verified, 9 files readable, 1 match

[43030] doi:10.3389/fnagi.2022.919614 [paper, data]

Identification of diagnostic signatures associated with immune infiltration in Alzheimer's disease by integrating bioinformatic analysis and machine-learning strategies.

Journal: Frontiers in aging neuroscience

Status: data only, 1 dataset cited

[43031] doi:10.3389/fnagi.2022.941927 [paper, data]

Early increase of cerebrospinal fluid 14-3-3ζ protein in the alzheimer's disease continuum.

Journal: Frontiers in aging neuroscience

Status: data only, 7 datasets cited

[43032] doi:10.3389/fnhum.2022.909939 [paper, data]

How to orchestrate a soccer team: Generalized synchronization promoted by rhythmic acoustic stimuli.

Journal: Frontiers in human neuroscience

Status: data only, 3 datasets cited

[43033] doi:10.3389/fnins.2022.911034 [paper, repository]

Combining electro- and magnetoencephalography data using directional archetypal analysis.

Journal: Frontiers in neuroscience

Authors' code: anders-s-olsen/DirectionalArchetypalAnalysis (no license), robertoostenveld/Wakeman-and-Henson-2015 (no license)

Status: code verified, 61 files readable, 9 matches

[43034] doi:10.3390/biomedicines10081831 [paper, repository]

Purkinje Cell Activity Resonation Generates Rhythmic Behaviors at the Preferred Frequency of 8 Hz.

Journal: Biomedicines

Authors' code: elifesciences-publications/BWTT_PP (MIT)

Status: empty repository, 1 file readable

[43035] doi:10.3390/mi13081212 [paper, repository]

Stimulus-Evoked Activity Modulation of In Vitro Engineered Cortical and Hippocampal Networks.

Journal: Micromachines

Authors' code: Zenodo 6882374 (other-open), screenneuropharm/electricalstimulation (MIT)

Status: code verified, 7 files readable

[43036] doi:10.7554/elife.77215 [paper, repository]

Heritability and cross-species comparisons of human cortical functional organization asymmetry.

Journal: eLife

Authors' code: cng-lab/cngopen (MIT)

Status: code verified, 33 files readable, 13 matches

[43037] doi:10.7554/elife.78079 [paper, data]

Label-free three-photon imaging of intact human cerebral organoids for tracking early events in brain development and deficits in Rett syndrome.

Journal: eLife

Status: data only, 1 dataset cited

Thursday, 28 July 2022 (25 papers)

[43038] doi:10.1002/hbm.26027 [paper, repository]

Longitudinally stable, brain-based predictive models mediate the relationships between childhood cognition and socio-demographic, psychological and genetic factors.

Journal: Human brain mapping

Authors' code: bgreenwell.github.io/fastshap (no license), narunpat.github.io/gfactormodelingabcd3 (no license)

Status: code verified

[43039] doi:10.1021/acs.jproteome.2c00184 [paper, data]

Protein Expression Profile of ACE2 in the Normal and COVID-19-Affected Human Brain.

Journal: Journal of proteome research

Status: data only, 1 dataset cited

[43040] doi:10.1038/s41380-022-01700-w [paper]

Alterations in TRN-anterodorsal thalamocortical circuits affect sleep architecture and homeostatic processes in oxidative stress vulnerable Gclm^-/- mice.

Journal: Molecular psychiatry

Status: code on request

[43041] doi:10.1038/s41419-022-05109-9 [paper, repository]

Palmitic acid control of ciliogenesis modulates insulin signaling in hypothalamic neurons through an autophagy-dependent mechanism.

Journal: Cell death & disease

Authors' code: KanchanawongLab/Morphometry (no license)

Status: empty repository

[43042] doi:10.1038/s41467-022-32064-y [paper, repository]

A density-based enrichment measure for assessing colocalization in single-molecule localization microscopy data.

Journal: Nature communications

Authors' code: ejdrup/relative-enrichment (MIT), Zenodo 6627703 (other-open)

Status: code verified, 12 files readable

[43043] doi:10.1038/s41467-022-32078-6 [paper]

Metaplastic and energy-efficient biocompatible graphene artificial synaptic transistors for enhanced accuracy neuromorphic computing.

Journal: Nature communications

Status: code on request

[43044] doi:10.1038/s41598-022-16956-z [paper, repository]

Interpersonal neural synchrony when predicting others' actions during a game of rock-paper-scissors.

Journal: Scientific reports

Authors' code: tnguyen1992/RPS (CC0-1.0)

Status: code verified, 17 files readable, 2 matches

[43045] doi:10.1038/s41598-022-17081-7 [paper, data]

Evidence for oligodendrocyte progenitor cell heterogeneity in the adult mouse brain.

Journal: Scientific reports

Status: data only, 1 dataset cited

[43046] doi:10.1073/pnas.2203266119 [paper, repository]

An excitatory peri-tegmental reticular nucleus circuit for wake maintenance.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: johnmichaelwebb/sleep-code (GPL-3.0)

Status: code verified, 47 files readable, 3 matches

[43047] doi:10.1111/jth.15813 [paper, data]

Risk factors and predictors for venous thromboembolism in people with ischemic stroke: A systematic review.

Journal: Journal of thrombosis and haemostasis : JTH

Status: data only, 2 datasets cited

[43048] doi:10.1186/s13287-022-03050-4 [paper, data]

The potential use of mesenchymal stem cells and their exosomes in Parkinson's disease treatment.

Journal: Stem cell research & therapy

Status: data only, 2 datasets cited

[43049] doi:10.1186/s13395-022-00301-z [paper, data]

Dysregulation of Tweak and Fn14 in skeletal muscle of spinal muscular atrophy mice.

Journal: Skeletal muscle

Status: data only, 3 datasets cited

[43050] doi:10.1371/journal.pbio.3001675 [paper, repository]

Neural responses in human superior temporal cortex support coding of voice representations.

Journal: PLoS biology

Authors' code: Zenodo 6544488 (other-open)

Status: code verified

[43051] doi:10.1371/journal.pone.0266098 [paper, repository]

Automatic Multi-functional Integration Program (AMFIP) towards all-optical mechano-electrophysiology interrogation.

Journal: PloS one

Authors' code: njheadshotz/AMFIP (no license)

Status: empty repository, 1 file readable

[43052] doi:10.3389/fimmu.2022.935798 [paper]

Pericyte derived chemokines amplify neutrophil recruitment across the cerebrovascular endothelial barrier.

Journal: Frontiers in immunology

Status: data only

[43053] doi:10.3389/fnagi.2022.964336 [paper, data]

Distribution and inter-regional relationship of amyloid-beta plaque deposition in a 5xFAD mouse model of Alzheimer's disease.

Journal: Frontiers in aging neuroscience

Status: data only, 1 dataset cited

[43054] doi:10.3389/fnbot.2022.844753 [paper, repository]

Spatial relation learning in complementary scenarios with deep neural networks.

Journal: Frontiers in neurorobotics

Authors' code: knowledgetechnologyuhh/QDRL (no license)

Status: code verified, 28 files readable, 2 matches

[43055] doi:10.3389/fncel.2022.838419 [paper, data]

Homeostatic regulation of extracellular signal-regulated kinase 1/2 activity and axonal K_v7.3 expression by prolonged blockade of hippocampal neuronal activity.

Journal: Frontiers in cellular neuroscience

Status: data only, 2 datasets cited

[43056] doi:10.3389/fneur.2022.902402 [paper, data]

Construction and validation of a glioblastoma prognostic model based on immune-related genes.

Journal: Frontiers in neurology

Status: data only, 1 dataset cited

[43057] doi:10.3389/fnmol.2022.940005 [paper]

Regulation of NMDA Receptor Signaling at Single Synapses by Human Anti-NMDA Receptor Antibodies.

Journal: Frontiers in molecular neuroscience

Status: code on request

[43058] doi:10.3389/fnut.2022.946096 [paper]

<i>Lactobacillus plantarum</i>-derived postbiotics prevent <i>Salmonella</i>-induced neurological dysfunctions by modulating gut-brain axis in mice.

Journal: Frontiers in nutrition

Status: data only

[43059] doi:10.3389/fonc.2022.870034 [paper]

A miR-137-XIAP axis contributes to the sensitivity of TRAIL-induced cell death in glioblastoma.

Journal: Frontiers in oncology

Status: data only

[43060] doi:10.3389/fradi.2022.930666 [paper, repository]

Variability and reproducibility of multi-echo <i>T</i>₂ relaxometry: Insights from multi-site, multi-session and multi-subject MRI acquisitions.

Journal: Frontiers in radiology

Authors' code: ejcanalesr/multicomponent-T2-toolbox (no license), thomas-yu-epfl/Model_Informed_Machine_Learning (no license)

Status: code verified, 31 files readable, 7 matches

[43061] doi:10.3390/pharmaceutics14081573 [paper, repository]

Bioinformatics Strategies to Identify Shared Molecular Biomarkers That Link Ischemic Stroke and Moyamoya Disease with Glioblastoma.

Journal: Pharmaceutics

Authors' code: hiddenntreasure/glioblastoma (no license)

Status: code verified, 3 files readable, 1 match

[43062] doi:10.7554/elife.81002 [paper, data]

Global analysis of cytosine and adenine DNA modifications across the tree of life.

Journal: eLife

Status: data only, 1 dataset cited

Wednesday, 27 July 2022 (30 papers)

[43063] doi:10.1002/hbm.26031 [paper, data]

Transcriptional substrates underlying functional connectivity profiles of subregions within the human sensorimotor cortex.

Journal: Human brain mapping

Status: data only, 1 dataset cited

[43064] doi:10.1002/hbm.26034 [paper, repository]

Educational attainment polygenic scores, socioeconomic factors, and cortical structure in children and adolescents.

Journal: Human brain mapping

Authors' code: hub.docker.com/r/eauforest (no license)

Status: code verified

[43065] doi:10.1007/s00429-022-02536-4 [paper, data]

Geometric effects of volume-to-surface mapping of fMRI data.

Journal: Brain structure & function

Status: data only, 2 datasets cited

[43066] doi:10.1007/s11357-022-00630-3 [paper, repository]

Hypothalamic microstructure and function are related to body mass, but not mental or cognitive abilities across the adult lifespan.

Journal: GeroScience

Authors' code: OSF qh9ga (no license)

Status: code verified, 5 files readable, 5 matches

[43067] doi:10.1016/j.xgen.2022.100164 [paper, repository]

Single-cell multiome of the human retina and deep learning nominate causal variants in complex eye diseases.

Journal: Cell genomics

Authors' code: Zenodo 6795162 (other-open), Zenodo 6796067 (other-open), seankwang/retina-multiome (no license), kundajelab/retina-models (MIT)

Status: code verified, 76 files readable, 3 matches

[43068] doi:10.1038/s41467-022-31730-5 [paper, repository]

Structural network alterations in focal and generalized epilepsy assessed in a worldwide ENIGMA study follow axes of epilepsy risk gene expression.

Journal: Nature communications

Authors' code: MICA-MNI/ENIGMA (BSD-3-Clause), abagen.readthedocs.io (no license)

Status: code verified, 119 files readable, 6 matches

[43069] doi:10.1038/s41586-022-05014-3 [paper, repository]

Cortical feedback loops bind distributed representations of working memory.

Journal: Nature

Authors' code: Ivan-Voitov/Vizi (no license), ivan-voitov/loops (no license)

Status: code verified, 82 files readable, 6 matches

[43070] doi:10.1038/s41597-022-01562-5 [paper, repository]

Standard metadata for 3D microscopy.

Journal: Scientific data

Authors' code: Defining-Our-Research-Methodology-DORy/3D-Microscopy-Metadata-Standards-3D-MMS (no license)

Status: code verified, 3 files readable, 2 matches

[43071] doi:10.1038/s41598-022-15669-7 [paper, data]

Deep multi-modal learning for joint linear representation of nonlinear dynamical systems.

Journal: Scientific reports

Status: data only, 1 dataset cited

[43072] doi:10.1038/s41598-022-16741-y [paper, repository]

EMD-based data augmentation method applied to handwriting data for the diagnosis of Essential Tremor using LSTM networks.

Journal: Scientific reports

Authors' code: uchidalab/time_series_augmentation (Apache-2.0), ffbear1993/DR-EMD (no license), ffbear1993/serial-emd (no license)

Status: code verified, 32 files readable, 4 matches

[43073] doi:10.1038/s42003-022-03711-3 [paper, repository]

Real-world size of objects serves as an axis of object space.

Journal: Communications biology

Authors' code: helloTC/RealWorldSizeAxis (MIT)

Status: code verified, 26 files readable, 2 matches

[43074] doi:10.1101/gr.276109.121 [paper, repository]

Identifying cell state-associated alternative splicing events and their coregulation.

Journal: Genome research

Authors' code: lareaulab/Psix (no license), lareaulab/analysis_psix (no license), genome.cshlp.org/lookup/suppl (no license)

Status: code verified, 80 files readable, 16 matches

[43075] doi:10.1111/cns.13901 [paper, data]

Whole-transcriptome sequencing identifies neuroinflammation, metabolism and blood-brain barrier related processes in the hippocampus of aged mice during perioperative period.

Journal: CNS neuroscience & therapeutics

Status: data only, 1 dataset cited

[43076] doi:10.1111/cns.13925 [paper, data]

Determination of significant parameters in remote ischemic postconditioning for ischemic stroke in experimental models: A systematic review and meta-analysis study.

Journal: CNS neuroscience & therapeutics

Status: data only, 6 datasets cited

[43077] doi:10.1148/ryai.210315 [paper, repository]

RadImageNet: An Open Radiologic Deep Learning Research Dataset for Effective Transfer Learning.

Journal: Radiology. Artificial intelligence

Authors' code: BMEII-AI/RadImageNet (MIT)

Status: code verified, 11 files readable, 4 matches

[43078] doi:10.1155/2022/9153697 [paper, repository]

NTM-Based Skill-Aware Knowledge Tracing for Conjunctive Skills.

Journal: Computational intelligence and neuroscience

Authors' code: chrispiech/DeepKnowledgeTracing (no license), MarkPKCollier/NeuralTuringMachine (LGPL-3.0), jennyzhang0215/DKVMN (no license), shalini1194/SAKT (no license)

Status: code verified, 35 files readable, 3 matches

[43079] doi:10.1177/09567976221086513 [paper, repository]

Fear in the Theater of the Mind: Differential Fear Conditioning With Imagined Stimuli.

Journal: Psychological science

Authors' code: OSF zdc8t (no license)

Status: code verified

[43080] doi:10.1186/s12863-022-01075-5 [paper, repository]

Tandem repeats ubiquitously flank and contribute to translation initiation sites.

Journal: BMC genomic data

Authors' code: yasilis/strsminer-javapackage_papersubmission (CC0-1.0)

Status: code verified, 55 files readable, 1 match

[43081] doi:10.1186/s13052-022-01325-3 [paper, data]

EIF2B2 gene mutation causing early onset vanishing white matter disease: a case report.

Journal: Italian journal of pediatrics

Status: data only, 6 datasets cited

[43082] doi:10.1186/s13063-022-06429-z [paper, repository]

The 2nd European Carotid Surgery Trial (ECST-2): rationale and protocol for a randomised clinical trial comparing immediate revascularisation versus optimised medical therapy alone in patients with symptomatic and asymptomatic carotid stenosis at low to intermediate risk of stroke.

Journal: Trials

Authors' code: ecst2.com (no license)

Status: code found, still to be checked

[43083] doi:10.1371/journal.pone.0268752 [paper, repository]

Model-based stationarity filtering of long-term memory data applied to resting-state blood-oxygen-level-dependent signal.

Journal: PloS one

Authors' code: Ishita-Rai/rsfMRI-Fractional-Filter (no license)

Status: code verified, 29 files readable, 1 match

[43084] doi:10.3389/fneur.2022.888221 [paper, data]

Serum microRNA-4297 is a sex-specific predictive biomarker of glioma grade and prognosis.

Journal: Frontiers in neurology

Status: data only, 1 dataset cited

[43085] doi:10.3389/fneur.2022.932219 [paper, repository]

Preoperative Brain Tumor Imaging: Models and Software for Segmentation and Standardized Reporting.

Journal: Frontiers in neurology

Authors' code: dbouget/Raidionics (BSD-2-Clause), dbouget/validation_metrics_computation (BSD-2-Clause)

Status: code verified, 173 files readable, 15 matches

[43086] doi:10.3389/fnins.2022.909225 [paper]

EEG response in humans for frequency-tagged anticorrelated random-dot stereograms: Increased coherency and alpha oscillations.

Journal: Frontiers in neuroscience

Status: code on request

[43087] doi:10.3389/fnins.2022.957181 [paper, data]

Parkinson's disease detection based on multi-pattern analysis and multi-scale convolutional neural networks.

Journal: Frontiers in neuroscience

Status: data only, 1 dataset cited

[43088] doi:10.3389/fonc.2022.818693 [paper, repository]

Comprehensive Analysis of the Immunogenomics of Triple-Negative Breast Cancer Brain Metastases From LCCC1419.

Journal: Frontiers in oncology

Authors' code: supp:PMC9387304/DataSheet_1.zip (no license)

Status: empty repository

[43089] doi:10.3390/cancers14153659 [paper]

Identification of Prognostic Genes in Gliomas Based on Increased Microenvironment Stiffness.

Journal: Cancers

Status: data only

[43090] doi:10.3390/genes13081347 [paper, data]

Transcriptome Analysis Identifies Key Metabolic Changes in the Brain of <i>Takifugu rubripes</i> in Response to Chronic Hypoxia.

Journal: Genes

Status: data only, 1 dataset cited

[43091] doi:10.3390/ijms23158316 [paper, data]

High-Fat Diet Consumption in Adolescence Induces Emotional Behavior Alterations and Hippocampal Neurogenesis Deficits Accompanied by Excessive Microglial Activation.

Journal: International journal of molecular sciences

Status: data only, 2 datasets cited

[43092] doi:10.7554/elife.77220 [paper, repository]

Flexible and efficient simulation-based inference for models of decision-making.

Journal: eLife

Authors' code: mackelab/sbi (Apache-2.0), mackelab/mnle-for-ddms (AGPL-3.0)

Status: code verified, 298 files readable, 11 matches

Tuesday, 26 July 2022 (30 papers)

[43093] doi:10.1002/advs.202105938 [paper, data]

ASCL2 Maintains Stemness Phenotype through ATG9B and Sensitizes Gliomas to Autophagy Inhibitor.

Journal: Advanced science (Weinheim, Baden-Wurttemberg, Germany)

Status: data only, 1 dataset cited

[43094] doi:10.1016/j.ebiom.2022.104159 [paper, data]

Region-specific microRNA alterations in marmosets carrying SLC6A4 polymorphisms are associated with anxiety-like behavior.

Journal: EBioMedicine

Status: data only, 1 dataset cited

[43095] doi:10.1016/j.nbd.2022.105834 [paper, data]

Prions induce an early Arc response and a subsequent reduction in mGluR5 in the hippocampus.

Journal: Neurobiology of disease

Status: data only, 1 dataset cited

[43096] doi:10.1038/s41398-022-02057-y [paper, data]

Neuroanatomical heterogeneity and homogeneity in individuals at clinical high risk for psychosis.

Journal: Translational psychiatry

Status: code on request, 1 dataset cited

[43097] doi:10.1038/s41467-022-31873-5 [paper, data]

Shared mechanisms across the major psychiatric and neurodegenerative diseases.

Journal: Nature communications

Status: code on request, 1 dataset cited

[43098] doi:10.1038/s41597-022-01506-z [paper, repository]

A curated binary pattern multitarget dataset of focused ATP-binding cassette transporter inhibitors.

Journal: Scientific data

Authors' code: pubchem.ncbi.nlm.nih.gov (no license)

Status: code verified

[43099] doi:10.1038/s41598-022-16325-w [paper]

Psilocybin reduces low frequency oscillatory power and neuronal phase-locking in the anterior cingulate cortex of awake rodents.

Journal: Scientific reports

Status: code on request

[43100] doi:10.1038/s41598-022-16609-1 [paper, repository]

AutoComBat: a generic method for harmonizing MRI-based radiomic features.

Journal: Scientific reports

Authors' code: Alxaline/ComScan (no license), Alxaline/QAnT (Apache-2.0), ccipd/MRQy (no license)

Status: code verified, 93 files readable, 6 matches

[43101] doi:10.1038/s41598-022-17289-7 [paper, repository]

Author Correction: Maximum entropy models provide functional connectivity estimates in neural networks.

Journal: Scientific reports

Authors' code: team-hdnet/hdnet (GPL-3.0)

Status: code verified, 34 files readable

[43102] doi:10.1073/pnas.2107942119 [paper, repository]

Ca2+ imaging of self and other in medial prefrontal cortex during social dominance interactions in a tube test.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: rufusmitchellheggs/Behavioral-Tuned-Cells (MIT), datashare.ed.ac.uk/handle/10283 (no license)

Status: code verified, 3 files readable, 3 matches

[43103] doi:10.1073/pnas.2116974119 [paper, data]

Dynamic regulation and requirement for ribosomal RNA transcription during mammalian development.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 1 dataset cited

[43104] doi:10.1073/pnas.2201128119 [paper, repository]

Deep neural networks constrained by neural mass models improve electrophysiological source imaging of spatiotemporal brain dynamics.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: bfinl/FAST-IRES (CC-BY-SA-4.0), bfinl/DeepSIF (BSD-3-Clause)

Status: code verified, 46 files readable, 8 matches

[43105] doi:10.1073/pnas.2204901119 [paper, data]

A missense mutation in &lt;i&gt;Kcnc3&lt;/i&gt; causes hippocampal learning deficits in mice.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 1 dataset cited

[43106] doi:10.1073/pnas.2205821119 [paper, data]

Motivational trade-offs and modulation of nociception in bumblebees.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 1 dataset cited

[43107] doi:10.1111/ejn.15769 [paper, repository]

Enhanced mismatch negativity in harmonic compared with inharmonic sounds.

Journal: The European journal of neuroscience

Authors' code: OSF jseu8 (no license), OSF je4xz (no license)

Status: code verified, 32 files readable, 5 matches

[43108] doi:10.1186/s13195-022-01050-3 [paper, data]

Krüppel-like factor 5 accelerates the pathogenesis of Alzheimer's disease via BACE1-mediated APP processing.

Journal: Alzheimer's research & therapy

Status: data only, 1 dataset cited

[43109] doi:10.1186/s13293-022-00448-w [paper, data]

Sex differences in the human brain: a roadmap for more careful analysis and interpretation of a biological reality.

Journal: Biology of sex differences

Status: data only, 2 datasets cited

[43110] doi:10.1503/jpn.210198 [paper, data]

Effects of prenatal alcohol exposure on neurobehavioural development and volume of rostral cingulate cortex subregions.

Journal: Journal of psychiatry & neuroscience : JPN

Status: data only, 1 dataset cited

[43111] doi:10.3389/fcell.2022.917243 [paper, data]

<i>Ednrb</i> ^<i>-/-</i> mice with hirschsprung disease are missing Gad2-expressing enteric neurons in the ganglionated small intestine.

Journal: Frontiers in cell and developmental biology

Status: data only, 1 dataset cited

[43112] doi:10.3389/fchem.2022.906974 [paper, data]

Terazosin Analogs Targeting Pgk1 as Neuroprotective Agents: Design, Synthesis, and Evaluation.

Journal: Frontiers in chemistry

Status: data only, 2 datasets cited

[43113] doi:10.3389/fncom.2022.822987 [paper, repository]

Single channel approach for filtering electroencephalographic signals strongly contaminated with facial electromyography.

Journal: Frontiers in computational neuroscience

Authors' code: Zenodo 6591866 (CC-BY-4.0), Zenodo 6591865 (CC-BY-4.0)

Status: code verified

[43114] doi:10.3389/fnimg.2022.953215 [paper, repository]

Reproducing FSL's fMRI data analysis <i>via</i> Nipype: Relevance, challenges, and solutions.

Journal: Frontiers in neuroimaging

Authors' code: nipype.readthedocs.io (no license), OSF prg53 (no license), medianeuroscience/nipype_repro (no license), ReproNim/neurodocker (Apache-2.0)

Status: code verified, 50 files readable, 3 matches

[43115] doi:10.3389/fnsyn.2022.888214 [paper, repository]

Unraveling Functional Diversity of Cortical Synaptic Architecture Through the Lens of Population Coding.

Journal: Frontiers in synaptic neuroscience

Authors' code: schollben/SpineProbablisticModel2020 (no license)

Status: code verified, 4 files readable, 3 matches

[43116] doi:10.3390/brainsci12080988 [paper]

A Novel Necroptosis-Related Prognostic Signature of Glioblastoma Based on Transcriptomics Analysis and Single Cell Sequencing Analysis.

Journal: Brain sciences

Status: data only

[43117] doi:10.3390/cells11152299 [paper, data]

Vertebrate Cell Differentiation, Evolution, and Diseases: The Vertebrate-Specific Developmental Potential Guardians <i>VENTX</i>/<i>NANOG</i> and <i>POU5</i>/<i>OCT4</i> Enter the Stage.

Journal: Cells

Status: data only, 1 dataset cited

[43118] doi:10.3390/ijms23158209 [paper, data]

Chronic-Antibiotics Induced Gut Microbiota Dysbiosis Rescues Memory Impairment and Reduces β-Amyloid Aggregation in a Preclinical Alzheimer's Disease Model.

Journal: International journal of molecular sciences

Status: data only, 1 dataset cited

[43119] doi:10.3390/ijms23158224 [paper, repository]

A Novel In Vivo Model for Multiplexed Analysis of Callosal Connections upon Cortical Damage.

Journal: International journal of molecular sciences

Authors' code: imagej.net/plugins/align-image-by-line-roi (no license)

Status: code verified

[43120] doi:10.3390/molecules27154780 [paper, repository]

Identification of Potential Parkinson's Disease Drugs Based on Multi-Source Data Fusion and Convolutional Neural Network.

Journal: Molecules (Basel, Switzerland)

Authors' code: lemonfino/MSDF-CNN (no license)

Status: code verified, 12 files readable, 4 matches

[43121] doi:10.7554/elife.75398 [paper, repository]

Dopamine neuron morphology and output are differentially controlled by mTORC1 and mTORC2.

Journal: eLife

Authors' code: kamodulin/expansion-microscopy (MIT), opencv/opencv-python (MIT)

Status: code verified, 25 files readable, 4 matches

[43122] doi:10.7554/elife.76534 [paper, repository]

A scalable and modular automated pipeline for stitching of large electron microscopy datasets.

Journal: eLife

Authors' code: AllenInstitute/asap-modules (BSD-2-Clause), AllenInstitute/blue_sky_workflow_engine (BSD-2-Clause), saalfeldlab/render (GPL-2.0), AllenInstitute/render-python (BSD-2-Clause), AllenInstitute/em_imaging_workflow (BSD-2-Clause), AllenInstitute/render-python-apps (BSD-2-Clause), AllenInstitute/ren (no license)

Status: code verified, 1,346 files readable, 11 matches

Monday, 25 July 2022 (19 papers)

[43123] doi:10.1016/j.crmeth.2022.100259 [paper, data]

Meso-seq for in-depth transcriptomics in ultra-low amounts of FACS-purified neuronal nuclei.

Journal: Cell reports methods

Status: data only, 1 dataset cited

[43124] doi:10.1038/s41398-022-02061-2 [paper, repository]

Enhanced top-down sensorimotor processing in somatic anxiety.

Journal: Translational psychiatry

Authors' code: dipanjan-neuroscience/anxiety2021 (no license)

Status: code verified, 2 files readable, 2 matches

[43125] doi:10.1038/s41467-022-31254-y [paper, repository]

Noise correlations in neural ensemble activity limit the accuracy of hippocampal spatial representations.

Journal: Nature communications

Authors' code: approbatory/ML-project (no license)

Status: code verified, 1,424 files readable, 6 matches

[43126] doi:10.1038/s41598-022-15861-9 [paper, data]

Altered genome-wide hippocampal gene expression profiles following early life lead exposure and their potential for reversal by environmental enrichment.

Journal: Scientific reports

Status: data only, 1 dataset cited

[43127] doi:10.1038/s41598-022-16531-6 [paper, data]

A diffeomorphic aging model for adult human brain from cross-sectional data.

Journal: Scientific reports

Status: data only, 1 dataset cited

[43128] doi:10.1038/s42003-022-03692-3 [paper, data]

Multimodal anatomy of the human forniceal commissure.

Journal: Communications biology

Status: data only, 2 datasets cited

[43129] doi:10.1084/jem.20210998 [paper, data]

Inhibition of astrocytic DRD2 suppresses CNS inflammation in an animal model of multiple sclerosis.

Journal: The Journal of experimental medicine

Status: data only, 1 dataset cited

[43130] doi:10.1093/texcom/tgac027 [paper, repository]

One session of fMRI-Neurofeedback training on motor imagery modulates whole-brain effective connectivity and dynamical complexity.

Journal: Cerebral cortex communications

Authors' code: MatthieuGilson/WBLEC_toolbox (GPL-3.0)

Status: code verified, 6 files readable, 4 matches

[43131] doi:10.1186/s12877-022-03302-1 [paper, data]

Effect of multicomponent exercise in cognitive impairment: a systematic review and meta-analysis.

Journal: BMC geriatrics

Status: data only, 1 dataset cited

[43132] doi:10.1186/s12979-022-00289-6 [paper, repository]

Aged microglia promote peripheral T cell infiltration by reprogramming the microenvironment of neurogenic niches.

Journal: Immunity & ageing : I & A

Authors' code: ZJUDBlab/InterCellDB (no license)

Status: code verified, 12 files readable, 5 matches

[43133] doi:10.1186/s12987-022-00359-3 [paper, data]

Extracellular vesicles through the blood-brain barrier: a review.

Journal: Fluids and barriers of the CNS

Status: data only, 1 dataset cited

[43134] doi:10.1186/s13195-022-01039-y [paper, data]

YKL-40 changes are not detected in post-mortem brain of patients with Alzheimer's disease and frontotemporal lobar degeneration.

Journal: Alzheimer's research & therapy

Status: data only, 1 dataset cited

[43135] doi:10.1371/journal.pcbi.1010340 [paper, repository]

The dopamine circuit as a reward-taxis navigation system.

Journal: PLoS computational biology

Authors' code: omerka-weizmann/reward_taxis (no license)

Status: code verified, 3 files readable

[43136] doi:10.3389/fgene.2022.921582 [paper, repository]

Identification of circulating immune landscape in ischemic stroke based on bioinformatics methods.

Journal: Frontiers in genetics

Authors' code: cibersortx.stanford.edu (no license)

Status: code verified

[43137] doi:10.3389/fnins.2022.895637 [paper, data]

Two-step clustering-based pipeline for big dynamic functional network connectivity data.

Journal: Frontiers in neuroscience

Status: data only, 1 dataset cited

[43138] doi:10.3389/fnins.2022.947240 [paper, data]

Gut microbes and food reward: From the gut to the brain.

Journal: Frontiers in neuroscience

Status: data only, 1 dataset cited

[43139] doi:10.3389/fnins.2022.966877 [paper]

Temporal Cortex Microarray Analysis Revealed Impaired Ribosomal Biogenesis and Hyperactivity of the Glutamatergic System: An Early Signature of Asymptomatic Alzheimer's Disease.

Journal: Frontiers in neuroscience

Status: data only

[43140] doi:10.3390/ijms23158171 [paper, data]

Exploring the Mechanism of Adjuvant Treatment of Glioblastoma Using Temozolomide and Metformin.

Journal: International journal of molecular sciences

Status: data only, 1 dataset cited

[43141] doi:10.3390/nu14153052 [paper, data]

Association between Dietary Niacin Intake and Migraine among American Adults: National Health and Nutrition Examination Survey.

Journal: Nutrients

Status: data only, 3 datasets cited

Sunday, 24 July 2022 (2 papers)

[43142] doi:10.1186/s13071-022-05378-5 [paper, data]

Unveiling of brain transcriptome of masked palm civet (Paguma larvata) with chronic infection of Toxoplasma gondii.

Journal: Parasites & vectors

Status: data only, 9 datasets cited

[43143] doi:10.3390/diagnostics12081793 [paper, data]

Isolated Convolutional-Neural-Network-Based Deep-Feature Extraction for Brain Tumor Classification Using Shallow Classifier.

Journal: Diagnostics (Basel, Switzerland)

Status: data only, 2 datasets cited

Saturday, 23 July 2022 (8 papers)

[43144] doi:10.1002/humu.24440 [paper, repository]

Multi-omics analysis reveals multiple mechanisms causing Prader-Willi like syndrome in a family with a X;15 translocation.

Journal: Human mutation

Authors' code: NationalGenomicsInfrastructure/piper (MIT)

Status: code verified, 150 files readable, 2 matches

[43145] doi:10.1016/j.nicl.2022.103124 [paper, repository]

Spinal cord and brain tissue impairments as long-term effects of rugby practice? An exploratory study based on T₁ and ihMTsat measures.

Journal: NeuroImage. Clinical

Authors' code: lsoustelle/ihmt_proc (other)

Status: code verified, 7 files readable, 3 matches

[43146] doi:10.1038/s41598-022-16442-6 [paper, data]

A polygenic score indexing a DRD2-related co-expression network is associated with striatal dopamine function.

Journal: Scientific reports

Status: data only, 1 dataset cited

[43147] doi:10.1038/s41598-022-16896-8 [paper, data]

Human iPSC co-culture model to investigate the interaction between microglia and motor neurons.

Journal: Scientific reports

Status: data only, 1 dataset cited

[43148] doi:10.1093/braincomms/fcac192 [paper, repository]

Cysteine string protein alpha accumulates with early pre-synaptic dysfunction in Alzheimer's disease.

Journal: Brain communications

Authors' code: arraytomographyusers/Array_tomography_analysis_tool (no license)

Status: code verified, 15 files readable

[43149] doi:10.1111/mec.16611 [paper, repository]

Upwelling-level acidification and pH/pCO₂ variability moderate effects of ocean acidification on brain gene expression in the temperate surfperch, Embiotoca jacksoni.

Journal: Molecular ecology

Authors' code: jtoy7 (no license)

Status: code verified

[43150] doi:10.1186/s13041-022-00953-4 [paper, data]

Knockdown of myorg leads to brain calcification in zebrafish.

Journal: Molecular brain

Status: data only, 1 dataset cited

[43151] doi:10.1186/s13041-022-00954-3 [paper, data]

A large-scale polygenic risk score analysis identified candidate proteins associated with anxiety, depression and neuroticism.

Journal: Molecular brain

Status: data only, 2 datasets cited

Friday, 22 July 2022 (44 papers)

[43152] doi:10.1002/acn3.51623 [paper, data]

Cognitive reserve protects ALS-typical cognitive domains: A longitudinal study.

Journal: Annals of clinical and translational neurology

Status: data only, 1 dataset cited

[43153] doi:10.1007/s00018-022-04450-8 [paper, data]

Moxifloxacin rescues SMA phenotypes in patient-derived cells and animal model.

Journal: Cellular and molecular life sciences : CMLS

Status: data only, 8 datasets cited

[43154] doi:10.1016/j.neuroimage.2022.119462 [paper, repository]

The relationship between frequency content and representational dynamics in the decoding of neurophysiological data.

Journal: NeuroImage

Authors' code: OHBA-analysis/RepresentationalDynamicsModelling (no license), Zenodo 6579997 (CC-BY-4.0)

Status: code verified, 6 files readable, 3 matches

[43155] doi:10.1016/j.neuroimage.2022.119499 [paper, repository]

Representational coding of overt and covert orienting of visuospatial attention in the frontoparietal network.

Journal: NeuroImage

Authors' code: TingtingWu222/COAT (no license)

Status: code verified, 14 files readable, 10 matches

[43156] doi:10.1016/j.neuroimage.2022.119501 [paper, repository]

Inter-individual variability in current direction for common tDCS montages.

Journal: NeuroImage

Authors' code: caryse/tdcs_currentdirection (GPL-3.0)

Status: code verified, 58 files readable, 5 matches

[43157] doi:10.1038/s41398-022-02058-x [paper, data]

MYT1L in the making: emerging insights on functions of a neurodevelopmental disorder gene.

Journal: Translational psychiatry

Status: data only, 1 dataset cited

[43158] doi:10.1038/s41467-022-31674-w [paper, repository]

Neurocomputational mechanisms of confidence in self and others.

Journal: Nature communications

Authors' code: danbang/article-self-other (MIT)

Status: code verified, 59 files readable, 6 matches

[43159] doi:10.1038/s41467-022-31687-5 [paper, repository]

A macroscopic link between interhemispheric tract myelination and cortico-cortical interactions during action reprogramming.

Journal: Nature communications

Authors' code: git.fmrib.ox.ac.uk/alazari/macroscopic-link (no license)

Status: code verified

[43160] doi:10.1038/s41467-022-31790-7 [paper, data]

Heparin induces α-synuclein to form new fibril polymorphs with attenuated neuropathology.

Journal: Nature communications

Status: data only, 3 datasets cited

[43161] doi:10.1038/s41467-022-31808-0 [paper, repository]

Emergency triage of brain computed tomography via anomaly detection with a deep generative model.

Journal: Nature communications

Authors' code: seungjunlee96/emergency-triage-of-brain-computed-tomography-via-anomaly-detection-with-a-deep-generative-model (GPL)

Status: code verified, 26 files readable, 3 matches

[43162] doi:10.1038/s41467-022-31917-w [paper, repository]

A temperature-regulated circuit for feeding behavior.

Journal: Nature communications

Authors' code: qswenwen/Fiber-Photometry-preprocessing (no license)

Status: code verified, 6 files readable

[43163] doi:10.1038/s41467-022-31965-2 [paper, repository]

Predicting memory from the network structure of naturalistic events.

Journal: Nature communications

Authors' code: Zenodo 6574792 (other-open)

Status: code verified, 1 file readable

[43164] doi:10.1038/s41597-022-01542-9 [paper, repository]

Dataset of Speech Production in intracranial.Electroencephalography.

Journal: Scientific data

Authors' code: neuralinterfacinglab/SingleWordProductionDutch (MIT)

Status: code verified, 8 files readable, 10 matches

[43165] doi:10.1038/s41746-022-00630-9 [paper, repository]

Age estimation from sleep studies using deep learning predicts life expectancy.

Journal: NPJ digital medicine

Authors' code: abrinkk/psg-age-estimation (MIT)

Status: code verified, 78 files readable, 11 matches

[43166] doi:10.1038/s42003-022-03691-4 [paper, repository]

Cross-species experiments reveal widespread cochlear neural damage in normal hearing.

Journal: Communications biology

Authors' code: Zenodo 6672827 (other-open), haribharadwaj/CommunBiol_CrossSpecies_Synaptopathy (no license), SNAPsoftware/ANLffr (BSD-3-Clause), SNAPsoftware/SNAPacoustics (MIT), Zenodo 6672828 (other-open)

Status: code verified, 170 files readable, 10 matches

[43167] doi:10.1080/15548627.2022.2095791 [paper, data]

Stimulation of synaptic activity promotes TFEB-mediated clearance of pathological MAPT/Tau in cellular and mouse models of tauopathies.

Journal: Autophagy

Status: data only, 1 dataset cited

[43168] doi:10.1093/texcom/tgac028 [paper, repository]

Amygdala subnuclei volumes, functional connectivity, and social-emotional outcomes in children born very preterm.

Journal: Cerebral cortex communications

Authors' code: DevelopingBrainLab/amygdala_segmentation_Freesurfer (no license)

Status: code verified, 4 files readable

[43169] doi:10.1111/psyp.14152 [paper, data]

Effects of emotion and semantic relatedness on recognition memory: Behavioral and electrophysiological evidence.

Journal: Psychophysiology

Status: data only, 1 dataset cited

[43170] doi:10.1111/psyp.14155 [paper, repository]

Concealed identity information detection with pupillometry in rapid serial visual presentation.

Journal: Psychophysiology

Authors' code: OSF 9fkpm (no license), OSF 9uyzf (no license)

Status: code verified, 4 files readable, 1 match

[43171] doi:10.1126/sciadv.abo0155 [paper, data]

The ER protein Creld regulates ER-mitochondria contact dynamics and respiratory complex 1 activity.

Journal: Science advances

Status: data only, 1 dataset cited

[43172] doi:10.1186/s12891-022-05384-9 [paper, repository]

Introducing a brain-computer interface to facilitate intraoperative medical imaging control - a feasibility study.

Journal: BMC musculoskeletal disorders

Authors' code: caspa.visualstudio.com/cardpublic/_git (no license)

Status: code found, still to be checked

[43173] doi:10.1186/s12902-022-01086-4 [paper, data]

Dimethyl fumarate improves cognitive impairment by enhancing hippocampal brain-derived neurotrophic factor levels in hypothyroid rats.

Journal: BMC endocrine disorders

Status: data only, 1 dataset cited

[43174] doi:10.1186/s13195-022-01031-6 [paper, data]

Grey matter changes on brain MRI in subjective cognitive decline: a systematic review.

Journal: Alzheimer's research & therapy

Status: data only, 1 dataset cited

[43175] doi:10.1186/s13578-022-00850-2 [paper, data]

SENP6 induces microglial polarization and neuroinflammation through de-SUMOylation of Annexin-A1 after cerebral ischaemia-reperfusion injury.

Journal: Cell & bioscience

Status: data only, 4 datasets cited

[43176] doi:10.1371/journal.pone.0268880 [paper, repository]

Classification of motor imagery EEG using deep learning increases performance in inefficient BCI users.

Journal: PloS one

Authors' code: lee4567/DL-for-MI-BCI (no license)

Status: code verified, 4 files readable, 1 match

[43177] doi:10.1371/journal.pone.0270771 [paper, repository]

Problems with using comparative analyses of avian brain size to test hypotheses of cognitive evolution.

Journal: PloS one

Authors' code: figshare 17081297 (CC-BY-4.0), supp:PMC9307164/pone.0270771.s006.Rmd (no license)

Status: code verified, 2 files readable, 6 matches

[43178] doi:10.1371/journal.pone.0271765 [paper, repository]

Integration and evaluation of magnetic stimulation in physiology setups.

Journal: PloS one

Authors' code: mtahlers/magstim (CC0-1.0)

Status: code verified, 6 files readable, 1 match

[43179] doi:10.3389/fcvm.2022.941890 [paper, repository]

Sex-dependent transcription of cardiac electrophysiology and links to acetylation modifiers based on the GTEx database.

Journal: Frontiers in cardiovascular medicine

Authors' code: pressm/PLSGTEx (MIT)

Status: code verified, 12 files readable, 8 matches

[43180] doi:10.3389/fendo.2022.903058 [paper, repository]

Inter-Network Brain Functional Connectivity in Adolescents Assigned Female at Birth Who Experience Gender Dysphoria.

Journal: Frontiers in endocrinology

Authors' code: iit-land/adir_subtyping (no license), borealisdata.ca/dataset.xhtml (no license)

Status: code verified, 322 files readable, 6 matches

[43181] doi:10.3389/fimmu.2022.948457 [paper]

Fine-tuning of microglia polarization prevents diabetes-associated cerebral atherosclerosis.

Journal: Frontiers in immunology

Status: data only

[43182] doi:10.3389/fmed.2022.887062 [paper, data]

Mitochondria-Related Ferroptosis Drives Cognitive Deficits in Neonatal Mice Following Sevoflurane Administration.

Journal: Frontiers in medicine

Status: data only, 1 dataset cited

[43183] doi:10.3389/fmolb.2022.913602 [paper, data]

<i>MetastaSite</i>: Predicting metastasis to different sites using deep learning with gene expression data.

Journal: Frontiers in molecular biosciences

Status: data only, 1 dataset cited

[43184] doi:10.3389/fnagi.2022.791222 [paper, repository]

Linking Brain Age Gap to Mental and Physical Health in the Berlin Aging Study II.

Journal: Frontiers in aging neuroscience

Authors' code: pjawinski/base2 (no license), james-cole/brainageR (LGPL-3.0), OSF ap47h (no license)

Status: code verified, 28 files readable, 17 matches

[43185] doi:10.3389/fncel.2022.925493 [paper, data]

Immune-Triggered Forms of Plasticity Across Brain Regions.

Journal: Frontiers in cellular neuroscience

Status: data only, 1 dataset cited

[43186] doi:10.3389/fnhum.2022.898300 [paper, data]

2020 International brain-computer interface competition: A review.

Journal: Frontiers in human neuroscience

Status: data only, 4 datasets cited

[43187] doi:10.3389/fninf.2022.883796 [paper, repository]

A numerical population density technique for N-dimensional neuron models.

Journal: Frontiers in neuroinformatics

Authors' code: dekamps/miind (MIT)

Status: code verified, 379 files readable, 4 matches

[43188] doi:10.3389/fnins.2022.844851 [paper, data]

Channels and Features Identification: A Review and a Machine-Learning Based Model With Large Scale Feature Extraction for Emotions and ASD Classification.

Journal: Frontiers in neuroscience

Status: data only, 1 dataset cited

[43189] doi:10.3389/fnins.2022.912000 [paper, repository]

New MS lesion segmentation with deep residual attention gate U-Net utilizing 2D slices of 3D MR images.

Journal: Frontiers in neuroscience

Authors' code: beytullahsarica/new_ms_lesion_segmentation (MIT)

Status: empty repository, 2 files readable

[43190] doi:10.3389/fnins.2022.915744 [paper, repository]

The neural response at the fundamental frequency of speech is modulated by word-level acoustic and linguistic information.

Journal: Frontiers in neuroscience

Authors' code: MKegler/pyNSL (MIT)

Status: code verified, 6 files readable, 1 match

[43191] doi:10.3389/fphys.2022.908689 [paper, data]

Sirtuins and cognition: implications for learning and memory in neurological disorders.

Journal: Frontiers in physiology

Status: data only, 6 datasets cited

[43192] doi:10.3390/biomedicines10081772 [paper, repository]

Proteomic Assessment of C57BL/6 Hippocampi after Non-Selective Pharmacological Inhibition of Nitric Oxide Synthase Activity: Implications of Seizure-like Neuronal Hyperexcitability Followed by Tauopathy.

Journal: Biomedicines

Authors' code: adamscharlotte/L-NAME-Proteomic-Assessment (Apache-2.0)

Status: code verified, 6 files readable

[43193] doi:10.3390/jimaging8080205 [paper, data]

Brain Tumor Diagnosis Using Machine Learning, Convolutional Neural Networks, Capsule Neural Networks and Vision Transformers, Applied to MRI: A Survey.

Journal: Journal of imaging

Status: data only, 1 dataset cited

[43194] doi:10.3390/tomography8040156 [paper, repository]

Deep Learning-Based Segmentation of Post-Mortem Human's Olfactory Bulb Structures in X-ray Phase-Contrast Tomography.

Journal: Tomography (Ann Arbor, Mich.)

Authors' code: ankhafizov/olfactory-bulb-segmentation (no license)

Status: code verified, 18 files readable

[43195] doi:10.7554/elife.77153 [paper, data]

A viral toolbox for conditional and transneuronal gene expression in zebrafish.

Journal: eLife

Status: data only, 1 dataset cited

Thursday, 21 July 2022 (25 papers)

[43196] doi:10.1002/brb3.2707 [paper, data]

Structural disconnectome mapping of cognitive function in poststroke patients.

Journal: Brain and behavior

Status: data only, 2 datasets cited

[43197] doi:10.1002/brb3.2714 [paper]

A window into eye movement dysfunction following mTBI: A scoping review of magnetic resonance imaging and eye tracking findings.

Journal: Brain and behavior

Status: code on request

[43198] doi:10.1002/hbm.25988 [paper, data]

Reinforcement learning with associative or discriminative generalization across states and actions: fMRI at 3 T and 7 T.

Journal: Human brain mapping

Status: data only, 1 dataset cited

[43199] doi:10.1002/hbm.26022 [paper, repository]

Physiological symmetry of transcranial magnetic stimulation-evoked EEG spectral features.

Journal: Human brain mapping

Authors' code: renzocom/CorrCA (no license)

Status: code verified, 2 files readable

[43200] doi:10.1007/s00018-022-04465-1 [paper, data]

The role of microglial/macrophagic salt-inducible kinase 3 on normal and excessive phagocytosis after transient focal cerebral ischemia.

Journal: Cellular and molecular life sciences : CMLS

Status: data only, 1 dataset cited

[43201] doi:10.1007/s00415-022-11266-w [paper, data]

Subthalamic deep brain stimulation for refractory Gilles de la Tourette's syndrome: clinical outcome and functional connectivity.

Journal: Journal of neurology

Status: data only, 1 dataset cited

[43202] doi:10.1007/s11682-022-00708-8 [paper, data]

Centrality and interhemispheric coordination are related to different clinical/behavioral factors in attention deficit/hyperactivity disorder: a resting-state fMRI study.

Journal: Brain imaging and behavior

Status: data only, 1 dataset cited

[43203] doi:10.1007/s13311-022-01257-0 [paper, repository]

Novel Antidepressant-Like Properties of the Iron Chelator Deferiprone in a Mouse Model of Depression.

Journal: Neurotherapeutics : the journal of the American Society for Experimental NeuroTherapeutics

Authors' code: vuzungil01/dfp_network (no license)

Status: empty repository

[43204] doi:10.1016/j.isci.2022.104746 [paper, data]

Physiological changes throughout an insect ear due to age and noise - A longitudinal study.

Journal: iScience

Status: code on request, 1 dataset cited

[43205] doi:10.1016/j.isci.2022.104797 [paper, repository]

Light-sheet mesoscopy with the Mesolens provides fast sub-cellular resolution imaging throughout large tissue volumes.

Journal: iScience

Authors' code: elianabattistella/Mesolens_LS (CC0-1.0)

Status: code verified, 3 files readable

[43206] doi:10.1016/j.isci.2022.104813 [paper]

A microengineered Brain-Chip to model neuroinflammation in humans.

Journal: iScience

Status: code on request

[43207] doi:10.1016/j.neuroimage.2022.119496 [paper, repository]

NLGC: Network localized Granger causality with application to MEG directional functional connectivity analysis.

Journal: NeuroImage

Authors' code: BabadiLab/NLGC (BSD-3-Clause)

Status: code verified, 14 files readable, 6 matches

[43208] doi:10.1038/s41467-022-31728-z [paper, data]

Lateral habenula glutamatergic neurons projecting to the dorsal raphe nucleus promote aggressive arousal in mice.

Journal: Nature communications

Status: data only, 1 dataset cited

[43209] doi:10.1038/s41467-022-31752-z [paper, data]

Heterogeneous nuclear ribonucleoprotein U (HNRNPU) safeguards the developing mouse cortex.

Journal: Nature communications

Status: data only, 1 dataset cited

[43210] doi:10.1038/s41467-022-31799-y [paper, data]

Engineered biomimetic nanoparticles achieve targeted delivery and efficient metabolism-based synergistic therapy against glioblastoma.

Journal: Nature communications

Status: data only, 3 datasets cited

[43211] doi:10.1038/s41467-022-31869-1 [paper, data]

Targeting retinoic acid receptor alpha-corepressor interaction activates chaperone-mediated autophagy and protects against retinal degeneration.

Journal: Nature communications

Status: data only, 3 datasets cited

[43212] doi:10.1038/s41598-022-15400-6 [paper, repository]

Machine learning prediction of hematoma expansion in acute intracerebral hemorrhage.

Journal: Scientific reports

Authors' code: taniokas-neuro/predict-hematoma-expansion (no license)

Status: empty repository

[43213] doi:10.1038/s41598-022-16691-5 [paper, data]

Neural specialization to human faces at the age of 7 months.

Journal: Scientific reports

Status: data only, 1 dataset cited

[43214] doi:10.1177/15593258221115563 [paper, data]

Bioinformatics-Based Approach for Exploring the Immune Cell Infiltration Patterns in Alzheimer's Disease and Determining the Intervention Mechanism of Liuwei Dihuang Pill.

Journal: Dose-response : a publication of International Hormesis Society

Status: data only, 1 dataset cited

[43215] doi:10.1371/journal.pcbi.1010296 [paper, repository]

Modelling the modulation of cortical Up-Down state switching by astrocytes.

Journal: PLoS computational biology

Authors' code: modeldb:267310 (no license)

Status: code found, still to be checked

[43216] doi:10.1371/journal.pcbi.1010327 [paper, repository]

The spectrum of covariance matrices of randomly connected recurrent neuronal networks with linear dynamics.

Journal: PLoS computational biology

Authors' code: huyu00/netw_cov_spectrum (no license)

Status: code verified, 17 files readable, 3 matches

[43217] doi:10.1371/journal.pcbi.1010350 [paper, repository]

Asymmetric and adaptive reward coding via normalized reinforcement learning.

Journal: PLoS computational biology

Authors' code: OSF e6t5z (no license)

Status: code verified, 4 files readable, 5 matches

[43218] doi:10.1371/journal.pone.0271136 [paper, repository]

Targeted dimensionality reduction enables reliable estimation of neural population coding accuracy from trial-limited data.

Journal: PloS one

Authors' code: lbhb/baphy (no license), crheller/dDR (no license), Zenodo 5788573 (other-open)

Status: code verified, 2,033 files readable, 8 matches

[43219] doi:10.3390/biomedicines10071760 [paper, data]

Biomarkers of Neurodegenerative Diseases: Biology, Taxonomy, Clinical Relevance, and Current Research Status.

Journal: Biomedicines

Status: data only, 1 dataset cited

[43220] doi:10.7554/elife.80470 [paper, repository]

Mapping odorant sensitivities reveals a sparse but structured representation of olfactory chemical space by sensory input to the mouse olfactory bulb.

Journal: eLife

Authors' code: wachowiaklab/imageanalysissoftware (GPL-3.0), WachowiakLab (no license)

Status: code verified, 284 files readable

Wednesday, 20 July 2022 (26 papers, 12 on this page)

[43221] doi:10.1002/hbm.26025 [paper]

Multimodal fusion analysis of functional, cerebrovascular and structural neuroimaging in healthy aging subjects.

Journal: Human brain mapping

Status: code on request

[43222] doi:10.1016/j.isci.2022.104800 [paper, repository]

Humanized substitutions of <i>Vmat1</i> in mice alter amygdala-dependent behaviors associated with the evolution of anxiety.

Journal: iScience

Authors' code: OpenGene/fastp (MIT), daikisato12/Sato2022_Vmat1_paper (no license)

Status: code verified, 77 files readable, 1 match

[43223] doi:10.1016/j.isci.2022.104803 [paper, data]

Cochlear ribbon synapse maturation requires Nlgn1 and Nlgn3.

Journal: iScience

Status: code on request, 3 datasets cited

[43224] doi:10.1016/j.isci.2022.104805 [paper]

Cryo-fluorescence micro-optical sectioning tomography for volumetric imaging of various whole organs with subcellular resolution.

Journal: iScience

Status: code on request

[43225] doi:10.1016/j.jbc.2022.102293 [paper, data]

Multiple knockout mouse and embryonic stem cell models reveal the role of miR-124a in neuronal maturation.

Journal: The Journal of biological chemistry

Status: data only, 1 dataset cited

[43226] doi:10.1016/j.omto.2022.07.006 [paper]

Efficacy of cancer-specific anti-podoplanin CAR-T cells and oncolytic herpes virus G47Δ combination therapy against glioblastoma.

Journal: Molecular therapy oncolytics

Status: code on request

[43227] doi:10.1038/s41398-022-02063-0 [paper]

Cell-type specific changes in PKC-delta neurons of the central amygdala during alcohol withdrawal.

Journal: Translational psychiatry

Status: code on request

[43228] doi:10.1038/s41398-022-02065-y [paper, repository]

Maternal immune activation and adolescent alcohol exposure increase alcohol drinking and disrupt cortical-striatal-hippocampal oscillations in adult offspring.

Journal: Translational psychiatry

Authors' code: lucasdwi/code (no license)

Status: dead link

[43229] doi:10.1038/s41419-022-05058-3 [paper, data]

Galectin-3, a rising star in modulating microglia activation under conditions of neurodegeneration.

Journal: Cell death & disease

Status: data only, 1 dataset cited

[43230] doi:10.1038/s41467-022-31793-4 [paper, data]

An epigenome atlas of neural progenitors within the embryonic mouse forebrain.

Journal: Nature communications

Status: data only, 1 dataset cited

[43231] doi:10.1038/s41598-022-16137-y [paper, repository]

An interactive time series image analysis software for dendritic spines.

Journal: Scientific reports

Authors' code: argunsah/SpineSv2 (GPL-3.0)

Status: empty repository, 2 files readable

[43232] doi:10.1038/s42003-022-03683-4 [paper, repository]

A local interplay between diffusion and intraflagellar transport distributes TRPV-channel OCR-2 along C. elegans chemosensory cilia.

Journal: Communications biology

Authors' code: nbdan01/OCR-2-MSD-analysis (no license)

Status: code verified, 14 files readable, 2 matches

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