Every paper, by date: page 194

44,644 papers with a page: 24,189 with their authors' code, 4,955 with code on request, 15,495 with data only. The most recent first, 224 a page. Page 194 of 200: 20 July 2022 to 9 July 2022.

Wednesday, 20 July 2022 (26 papers, 14 on this page)

[43233] doi:10.1111/cns.13918 [paper, data]

Zinc improves neurological recovery by promoting angiogenesis via the astrocyte-mediated HIF-1α/VEGF signaling pathway in experimental stroke.

Journal: CNS neuroscience & therapeutics

Status: data only, 4 datasets cited

[43234] doi:10.1117/1.nph.9.3.032203 [paper]

Implantable acousto-optic window for monitoring ultrasound-mediated neuromodulation <i>in vivo</i>.

Journal: Neurophotonics

Status: code on request

[43235] doi:10.1117/1.nph.9.3.035001 [paper]

Assessing the relationship between the cerebral metabolic rate of oxygen and the oxidation state of cytochrome-c-oxidase.

Journal: Neurophotonics

Status: code on request

[43236] doi:10.1126/sciadv.abj9138 [paper, data]

Noncanonical activation of GLI signaling in SOX2&lt;sup&gt;+&lt;/sup&gt; cells drives medulloblastoma relapse.

Journal: Science advances

Status: data only, 1 dataset cited

[43237] doi:10.1126/sciadv.abo3505 [paper, repository]

Dissecting motor skill acquisition: Spatial coordinates take precedence.

Journal: Science advances

Authors' code: Zenodo 6490843 (CC-BY-4.0), Zenodo 8089332 (CC-BY-4.0), Zenodo 13375043 (CC-BY-4.0), Zenodo 8089333 (CC-BY-4.0), Zenodo 13903765 (CC-BY-4.0), Zenodo 12205102 (CC-BY-4.0)

Status: code verified, 1,521 files readable, 4 matches

[43238] doi:10.1152/jn.00423.2021 [paper, repository]

Modeling relationships between rhythmic processes and neuronal spike timing.

Journal: Journal of neurophysiology

Authors' code: Zenodo 6837168 (CC-BY-4.0)

Status: code verified, 17 files readable, 11 matches

[43239] doi:10.1152/jn.00485.2021 [paper, data]

More comprehensive proprioceptive stimulation of the hand amplifies its cortical processing.

Journal: Journal of neurophysiology

Status: data only, 1 dataset cited

[43240] doi:10.1371/journal.pntd.0010600 [paper]

Toxoplasma infection in male mice alters dopamine-sensitive behaviors and host gene expression patterns associated with neuropsychiatric disease.

Journal: PLoS neglected tropical diseases

Status: data only

[43241] doi:10.1371/journal.pone.0271334 [paper, data]

"Where am I?" A snapshot of the developmental topographical disorientation among young Italian adults.

Journal: PloS one

Status: data only, 1 dataset cited

[43242] doi:10.3389/fninf.2022.896292 [paper, repository]

<i>neu</i>Print: An open access tool for EM connectomics.

Journal: Frontiers in neuroinformatics

Authors' code: google/neuroglancer (Apache-2.0), connectome-neuprint/neuPrintHTTP (no license), connectome-neuprint/neuprint-python (BSD-3-Clause), connectome-neuprint/neuPrint (BSD-3-Clause), neo4j/trillion-graph (Apache-2.0)

Status: code verified, 1,152 files readable, 9 matches

[43243] doi:10.3390/life12071084 [paper, data]

Robust Gaussian and Nonlinear Hybrid Invariant Clustered Features Aided Approach for Speeded Brain Tumor Diagnosis.

Journal: Life (Basel, Switzerland)

Status: data only, 2 datasets cited

[43244] doi:10.3892/mmr.2022.12797 [paper, data]

A novel <i>de novo</i> heterozygous variant of the KCNQ2 gene: Contribution to early‑onset epileptic encephalopathy in a female infant.

Journal: Molecular medicine reports

Status: data only, 1 dataset cited

[43245] doi:10.7554/elife.76111 [paper, repository]

Dopamine D2Rs coordinate cue-evoked changes in striatal acetylcholine levels.

Journal: eLife

Authors' code: figshare 19586026 (CC-BY-4.0), figshare 19586032 (CC-BY-4.0)

Status: code verified, 2 files readable, 1 match

[43246] doi:10.7554/elife.78116 [paper, repository]

The rapid developmental rise of somatic inhibition disengages hippocampal dynamics from self-motion.

Journal: eLife

Authors' code: rouault-team-public/somatic-inhibition (MIT), cossartlab/cicada (MIT)

Status: code verified, 142 files readable, 3 matches

Tuesday, 19 July 2022 (29 papers)

[43247] doi:10.1002/glia.24244 [paper, data]

Microglia deficiency accelerates prion disease but does not enhance prion accumulation in the brain.

Journal: Glia

Status: data only, 1 dataset cited

[43248] doi:10.1002/hbm.26010 [paper, repository]

Systematic evaluation of machine learning algorithms for neuroanatomically-based age prediction in youth.

Journal: Human brain mapping

Authors' code: AmirhosseinModabbernia/DevelopmentalBrainAge (no license)

Status: empty repository

[43249] doi:10.1002/hbm.26014 [paper, repository]

Preoperative function-specific connectome analysis predicts surgery-related aphasia after glioma resection.

Journal: Human brain mapping

Authors' code: MIC-DKFZ/HD-BET (Apache-2.0)

Status: code verified, 7 files readable, 1 match

[43250] doi:10.1007/s11517-022-02630-z [paper, repository]

GA-MADRID: design and validation of a machine learning tool for the diagnosis of Alzheimer's disease and frontotemporal dementia using genetic algorithms.

Journal: Medical & biological engineering & computing

Authors' code: greendiscbio/neuro_miningandmodeling (no license)

Status: dead link

[43251] doi:10.1016/j.dcn.2022.101140 [paper, repository]

The HAPPE plus Event-Related (HAPPE+ER) software: A standardized preprocessing pipeline for event-related potential analyses.

Journal: Developmental cognitive neuroscience

Authors' code: PINE-Lab/HAPPE (GPL-3.0)

Status: code verified, 2,000 files readable, 11 matches

[43252] doi:10.1016/j.isci.2022.104771 [paper]

Dual pancreatic adrenergic and dopaminergic signaling as a therapeutic target of bromocriptine.

Journal: iScience

Status: code on request

[43253] doi:10.1016/j.neuroimage.2022.119460 [paper, repository]

Transient brain-wide coactivations and structured transitions revealed in hemodynamic imaging data.

Journal: NeuroImage

Authors' code: jstatsoft.org (no license)

Status: code verified

[43254] doi:10.1016/j.xhgg.2022.100131 [paper, repository]

Personalized structural biology reveals the molecular mechanisms underlying heterogeneous epileptic phenotypes caused by &lt;i&gt;de novo&lt;/i&gt; KCNC2 variants.

Journal: HGG advances

Authors' code: CapraLab/PSB (no license)

Status: empty repository, 1 file readable

[43255] doi:10.1021/acsomega.2c00871 [paper, repository]

Unbiased Data Analysis for the Parameterization of Fast Translocation Events through Nanopores.

Journal: ACS omega

Authors' code: Zenodo 6546320 (other-open), maglialab/holeypy (no license)

Status: code verified, 22 files readable, 1 match

[43256] doi:10.1021/acsomega.2c03058 [paper, data]

Prospective Evaluation of an Amide-Based Zinc Scaffold as an Anti-Alzheimer Agent: <i>In Vitro</i>, <i>In Vivo</i>, and Computational Studies.

Journal: ACS omega

Status: data only, 2 datasets cited

[43257] doi:10.1038/s41467-022-30653-5 [paper, repository]

[&lt;sup&gt;11&lt;/sup&gt;C]Martinostat PET analysis reveals reduced HDAC I availability in Alzheimer's disease.

Journal: Nature communications

Authors' code: TharickPascoal/Pascoal-et-al-Nat_Comm_2021 (no license), Zenodo 6388101 (other-open)

Status: code verified, 2 files readable

[43258] doi:10.1038/s41467-022-31408-y [paper, repository]

A brain precursor atlas reveals the acquisition of developmental-like states in adult cerebral tumours.

Journal: Nature communications

Authors' code: BenSimonsLab/Hamed_Nat-Commun_2022 (MIT)

Status: code verified, 26 files readable, 13 matches

[43259] doi:10.1038/s41539-022-00132-z [paper]

Redesigning navigational aids using virtual global landmarks to improve spatial knowledge retrieval.

Journal: NPJ science of learning

Status: code on request

[43260] doi:10.1073/pnas.2204379119 [paper, repository]

Motor learning without movement.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: kimoli/LearningFromThePathNotTaken (no license)

Status: code verified, 2 files readable, 2 matches

[43261] doi:10.1080/15384101.2022.2096715 [paper, data]

High expression of <i>HOXA4</i> in patients with glioma indicates unfavorable clinical outcomes.

Journal: Cell cycle (Georgetown, Tex.)

Status: data only, 1 dataset cited

[43262] doi:10.1111/cpr.13314 [paper, data]

Abnormal microglial polarization induced by Arid1a deletion leads to neuronal differentiation deficits.

Journal: Cell proliferation

Status: data only, 3 datasets cited

[43263] doi:10.1371/journal.pone.0271744 [paper, repository]

Analytical methods for assessing retinal cell coupling using cut-loading.

Journal: PloS one

Authors' code: supp:PMC9295955/pone.0271744.s001.m (no license)

Status: code verified, 1 file readable, 1 match

[43264] doi:10.17912/micropub.biology.000607 [paper, repository]

WormRuler: A software to track body length used to characterize a super red-shifted channelrhodopsin in <i>Caenorhabditis elegans</i>.

Journal: microPublication biology

Authors' code: dvettkoe/wormruler (MIT)

Status: code verified, 4 files readable

[43265] doi:10.3389/fgene.2022.836853 [paper, data]

Paternal De Novo Variant of &lt;i&gt;TAOK1&lt;/i&gt; in a Fetus With Structural Brain Abnormalities.

Journal: Frontiers in genetics

Status: data only, 1 dataset cited

[43266] doi:10.3389/fnbeh.2022.930216 [paper, data]

Heterozygous Deletion of Epilepsy Gene <i>KCNQ2</i> Has Negligible Effects on Learning and Memory.

Journal: Frontiers in behavioral neuroscience

Status: data only, 1 dataset cited

[43267] doi:10.3389/fnbot.2022.928206 [paper, data]

Side-Scan Sonar Image Segmentation Based on Multi-Channel CNN for AUV Navigation.

Journal: Frontiers in neurorobotics

Status: data only, 1 dataset cited

[43268] doi:10.3389/fnins.2022.937923 [paper, data]

Spatial Transcriptomics as a Novel Approach to Redefine Electrical Stimulation Safety.

Journal: Frontiers in neuroscience

Status: data only, 1 dataset cited

[43269] doi:10.3389/fnint.2022.854540 [paper]

Upregulation of CCNB2 and Its Perspective Mechanisms in Cerebral Ischemic Stroke and All Subtypes of Lung Cancer: A Comprehensive Study.

Journal: Frontiers in integrative neuroscience

Status: data only

[43270] doi:10.3389/fnut.2022.901333 [paper, repository]

The convolutional neural network as a tool to classify electroencephalography data resulting from the consumption of juice sweetened with caloric or non-caloric sweeteners.

Journal: Frontiers in nutrition

Authors' code: Atzingen/EEG_Sweetners_AI (MIT)

Status: code verified, 54 files readable

[43271] doi:10.3389/fnut.2022.934118 [paper, data]

Probiotic <i>Lactobacillus rhamnosus</i> GR-1 supplementation attenuates Pb-induced learning and memory deficits by reshaping the gut microbiota.

Journal: Frontiers in nutrition

Status: data only, 2 datasets cited

[43272] doi:10.3389/fphar.2022.881385 [paper, data]

DYRK1a Inhibitor Mediated Rescue of <i>Drosophila</i> Models of Alzheimer's Disease-Down Syndrome Phenotypes.

Journal: Frontiers in pharmacology

Status: data only, 1 dataset cited

[43273] doi:10.3390/ijms23147953 [paper, data]

Disruption of a Conservative Motif in the C-Terminal Loop of the KCNQ1 Channel Causes LQT Syndrome.

Journal: International journal of molecular sciences

Status: data only, 1 dataset cited

[43274] doi:10.3390/ijms23147964 [paper, data]

Bridging between Mouse and Human Enhancer-Promoter Long-Range Interactions in Neural Stem Cells, to Understand Enhancer Function in Neurodevelopmental Disease.

Journal: International journal of molecular sciences

Status: data only, 4 datasets cited

[43275] doi:10.3390/jpm12071177 [paper, repository]

Evaluating Translational Methods for Personalized Medicine-A Scoping Review.

Journal: Journal of personalized medicine

Authors' code: Zenodo 3770937 (CC-BY-4.0)

Status: empty repository

Monday, 18 July 2022 (26 papers)

[43276] doi:10.1002/brb3.2705 [paper]

Ginsenoside Rh2 administration produces crucial antidepressant-like effects in a CUMS-induced mice model of depression.

Journal: Brain and behavior

Status: code on request

[43277] doi:10.1016/j.crmeth.2022.100255 [paper, data]

Methods for culturing adult CNS neurons reveal a CNS conditioning effect.

Journal: Cell reports methods

Status: code on request, 1 dataset cited

[43278] doi:10.1016/j.ebiom.2022.104175 [paper, repository]

Impaired type I interferon signaling activity implicated in the peripheral blood transcriptome of preclinical Alzheimer's disease.

Journal: EBioMedicine

Authors' code: ZhaoXM-Lab/SCD_preAD (no license)

Status: code verified, 26 files readable, 12 matches

[43279] doi:10.1038/s41467-022-31591-y [paper, repository]

Orexin neurons inhibit sleep to promote arousal.

Journal: Nature communications

Authors' code: grinsted/wavelet-coherence (MIT), Zenodo 6570978 (CC-BY-4.0)

Status: code verified, 37 files readable, 2 matches

[43280] doi:10.1038/s41746-022-00652-3 [paper, repository]

Dynamic prediction of mortality after traumatic brain injury using a machine learning algorithm.

Journal: NPJ digital medicine

Authors' code: ralleraj/aip_tbi (CC-BY-4.0)

Status: empty repository, 2 files readable

[43281] doi:10.1038/s42003-022-03607-2 [paper, repository]

A large-scale genome-wide cross-trait analysis reveals shared genetic architecture between Alzheimer's disease and gastrointestinal tract disorders.

Journal: Communications biology

Authors' code: bulik/ldsc (GPL-3.0), mrcieu.github.io/twosamplemr (no license), vl.genoma.io/updates (no license), fuma.ctglab.nl (no license), biit.cs.ut.ee/gprofiler (no license), ebi.ac.uk/gwas/home (no license), joepickrell/gwas-pw (GPL-2.0), genetics.opentargets.org (no license)

Status: code verified, 69 files readable, 1 match

[43282] doi:10.1038/s42003-022-03632-1 [paper, data]

Mitochondria dysfunction in Charcot Marie Tooth 2B Peripheral Sensory Neuropathy.

Journal: Communications biology

Status: data only, 1 dataset cited

[43283] doi:10.1073/pnas.2201967119 [paper, data]

Elevated <i>BICD2</i> DNA methylation in blood of major depressive disorder patients and reduction of depressive-like behaviors in hippocampal <i>Bicd2</i>-knockdown mice.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 1 dataset cited

[43284] doi:10.1093/braincomms/fcac182 [paper, repository]

Hierarchical spectral clustering reveals brain size and shape changes in asymptomatic carriers of &lt;i&gt;C9orf72&lt;/i&gt;.

Journal: Brain communications

Authors' code: gitlab.kuleuven.be/u0064036/hierarchical-spectral-clustering (no license)

Status: dead link

[43285] doi:10.1111/acel.13503 [paper, data]

Effects of cerebral amyloid angiopathy on the brain vasculome.

Journal: Aging cell

Status: data only, 1 dataset cited

[43286] doi:10.1111/jsr.13701 [paper, data]

A brief nap during an acute stressor improves negative affect.

Journal: Journal of sleep research

Status: data only, 1 dataset cited

[43287] doi:10.1136/bmjopen-2021-059000 [paper, repository]

Deep learning for automatic brain tumour segmentation on MRI: evaluation of recommended reporting criteria via a reproduction and replication study.

Journal: BMJ open

Authors' code: deepmedic (no license), emiliagyska/repro_study (no license)

Status: code verified, 3 files readable, 1 match

[43288] doi:10.1155/2022/4861043 [paper, data]

The Efficacy of Remifentanil Combined with Propofol in Craniotomy for Tumor Was Evaluated by Wake Quality, Hemodynamics, and Adverse Reactions.

Journal: BioMed research international

Status: data only, 1 dataset cited

[43289] doi:10.1186/s13041-022-00945-4 [paper, data]

Subacute and chronic proteomic and phosphoproteomic analyses of a mouse model of traumatic brain injury at two timepoints and comparison with chronic traumatic encephalopathy in human samples.

Journal: Molecular brain

Status: data only, 2 datasets cited

[43290] doi:10.1186/s13229-022-00512-7 [paper, repository]

Attentional influences on neural processing of biological motion in typically developing children and those on the autism spectrum.

Journal: Molecular autism

Authors' code: ericcfields/fmut (BSD-3-Clause)

Status: code verified, 45 files readable, 2 matches

[43291] doi:10.1371/journal.pcbi.1010287 [paper, repository]

Single-cell network biology characterizes cell type gene regulation for drug repurposing and phenotype prediction in Alzheimer's disease.

Journal: PLoS computational biology

Authors' code: daifengwanglab/scNET (no license)

Status: code verified, 10 files readable, 2 matches

[43292] doi:10.1371/journal.pcbi.1010364 [paper, repository]

Network resonance can be generated independently at distinct levels of neuronal organization.

Journal: PLoS computational biology

Authors' code: EranStarkLab/NetworkResonance (no license)

Status: code verified, 26 files readable, 2 matches

[43293] doi:10.1371/journal.pone.0271279 [paper, repository]

A groupwise registration and tractography framework for cardiac myofiber architecture description by diffusion MRI: An application to the ventricular junctions.

Journal: PloS one

Authors' code: valeryozenne/Cardiac-Structure-Database (no license)

Status: code verified, 21 files readable, 1 match

[43294] doi:10.1590/0074-02760220025 [paper, data]

Design of a specific peptide against phenolic glycolipid-1 from Mycobacterium leprae and its implications in leprosy bacilli entry.

Journal: Memorias do Instituto Oswaldo Cruz

Status: data only, 1 dataset cited

[43295] doi:10.3389/fnins.2022.897226 [paper, repository]

Establishing a Baseline for Human Cortical Folding Morphological Variables: A Multisite Study.

Journal: Frontiers in neuroscience

Authors' code: Zenodo 5879895 (MIT), Zenodo 5348575 (CC-BY-4.0), Zenodo 3608675 (CC-BY-4.0), moraesfernanda/corticalfoldinghumans_deaging_harmonization (CC0-1.0)

Status: code verified, 264 files readable, 5 matches

[43296] doi:10.3389/fnins.2022.937861 [paper, repository]

A Disentangled Representation Based Brain Image Fusion <i>via</i> Group Lasso Penalty.

Journal: Frontiers in neuroscience

Authors' code: qqchong/A-Disentangled-Representation-based-Brain-Image-Fusion-via-Group-Lasso-Penalty (Apache-2.0), qqchong/A-Disentangled-Representationbased-Brain-Image-Fusion-via-Group-Lasso-Penalty (no license)

Status: code verified, 9 files readable

[43297] doi:10.3389/fpsyt.2022.939411 [paper, repository]

Optimizing functional near-infrared spectroscopy (fNIRS) channels for schizophrenic identification during a verbal fluency task using metaheuristic algorithms.

Journal: Frontiers in psychiatry

Authors' code: Xiadonn/Channel-Reduction-of-fNIRS (no license)

Status: code verified, 11 files readable, 1 match

[43298] doi:10.3390/cancers14143492 [paper, repository]

A Radiomics-Based Machine Learning Model for Prediction of Tumor Mutational Burden in Lower-Grade Gliomas.

Journal: Cancers

Authors' code: khanhlee/tmb-lgg (no license)

Status: code verified, 2 files readable

[43299] doi:10.7150/thno.72317 [paper, repository]

Dedifferentiated Schwann cell-derived TGF-β3 is essential for the neural system to promote wound healing.

Journal: Theranostics

Authors' code: aertslab/pyscenic (GPL-3.0)

Status: code verified, 48 files readable, 2 matches

[43300] doi:10.7150/thno.74125 [paper, repository]

Identification of early invisible acute ischemic stroke in non-contrast computed tomography using two-stage deep-learning model.

Journal: Theranostics

Authors' code: MedicalDataAI/AISD (CC0-1.0)

Status: code verified, 5 files readable

[43301] doi:10.7554/elife.67517 [paper, data]

Stress diminishes outcome but enhances response representations during instrumental learning.

Journal: eLife

Status: data only, 1 dataset cited

Sunday, 17 July 2022 (1 paper)

[43302] doi:10.1186/s12984-022-01049-9 [paper, data]

Intermittent theta burst stimulation modulates biceps brachii corticomotor excitability in individuals with tetraplegia.

Journal: Journal of neuroengineering and rehabilitation

Status: data only, 1 dataset cited

Saturday, 16 July 2022 (14 papers)

[43303] doi:10.1007/s11571-022-09836-9 [paper, repository]

A model of working memory for encoding multiple items and ordered sequences exploiting the theta-gamma code.

Journal: Cognitive neurodynamics

Authors' code: modeldb:267297 (no license)

Status: code found, still to be checked

[43304] doi:10.1007/s11682-022-00698-7 [paper]

Semantic fluency deficits and associated brain activity in Parkinson's disease with mild cognitive impairment.

Journal: Brain imaging and behavior

Status: code on request

[43305] doi:10.1016/j.isci.2022.104762 [paper]

Establishment of autaptic culture with human-induced pluripotent stem cell-derived astrocytes.

Journal: iScience

Status: code on request

[43306] doi:10.1016/j.jbc.2022.102272 [paper, data]

Crystal structure of Ankyrin-G in complex with a fragment of Neurofascin reveals binding mechanisms required for integrity of the axon initial segment.

Journal: The Journal of biological chemistry

Status: data only, 1 dataset cited

[43307] doi:10.1016/j.xpro.2022.101542 [paper, repository]

Measurement of ciliary beating and fluid flow in the zebrafish adult telencephalon.

Journal: STAR protocols

Authors' code: hansenjn/FreQ (GPL-3.0), Zenodo 5138071 (other-open)

Status: code verified, 22 files readable, 3 matches

[43308] doi:10.1016/j.xpro.2022.101547 [paper, repository]

Long-term SCN calcium signal recording in freely moving mice.

Journal: STAR protocols

Authors' code: Zenodo 6635701 (other-open), zhaiqiaocheng/Calcium-wave-analysis (no license)

Status: code verified, 2 files readable

[43309] doi:10.1038/s41419-022-05038-7 [paper, data]

ATM rules neurodevelopment and glutamatergic transmission in the hippocampus but not in the cortex.

Journal: Cell death & disease

Status: data only, 1 dataset cited

[43310] doi:10.1038/s41597-022-01538-5 [paper, repository]

A resource for assessing dynamic binary choices in the adult brain using EEG and mouse-tracking.

Journal: Scientific data

Authors' code: andlab-um/MT-EEG-dataset (MIT)

Status: code verified, 15 files readable, 6 matches

[43311] doi:10.1038/s41598-022-16454-2 [paper, data]

Ambiguous handedness and visuospatial pseudoneglect in schizotypy in physical and computer-generated virtual environments.

Journal: Scientific reports

Status: data only, 1 dataset cited

[43312] doi:10.1038/s42003-022-03672-7 [paper, repository]

Genome-wide association study of cerebellar volume provides insights into heritable mechanisms underlying brain development and mental health.

Journal: Communications biology

Authors' code: fuma.ctglab.nl (no license), ctg.cncr.nl/software/magma (no license), Kyoko-wtnb/mvGWAMA (GPL-3.0), bulik/ldsc (GPL-3.0), qlu-lab/SUPERGNOVA (MIT), chr1swallace.github.io/coloc (no license), christianbenner.com (no license), precimed/mixer (GPL-3.0), prsice.info (no license), privefl.github.io/bigsnpr (no license), cog-genomics.org/plink (no license), gabraham/flashpca (GPL-3.0)

Status: code verified, 93 files readable

[43313] doi:10.1155/2022/6197505 [paper]

Local and Distributed fMRI Changes Induced by 40 Hz Gamma tACS of the Bilateral Dorsolateral Prefrontal Cortex: A Pilot Study.

Journal: Neural plasticity

Status: code on request

[43314] doi:10.1186/s13148-022-01303-w [paper, data]

Psychostimulant-induced aberrant DNA methylation in an in vitro model of human peripheral blood mononuclear cells.

Journal: Clinical epigenetics

Status: data only, 1 dataset cited

[43315] doi:10.1186/s40478-022-01406-8 [paper, data]

DNA methylation alterations across time and space in paediatric brain tumours.

Journal: Acta neuropathologica communications

Status: data only, 1 dataset cited

[43316] doi:10.1186/s41235-022-00417-2 [paper, data]

Even affective changes induced by the global health crisis are insufficient to perturb the hyper-stability of visual long-term memory.

Journal: Cognitive research: principles and implications

Status: data only, 1 dataset cited

Friday, 15 July 2022 (26 papers)

[43317] doi:10.1016/j.biopsych.2022.06.033 [paper, repository]

Single-Nuclei RNA Sequencing of 5 Regions of the Human Prenatal Brain Implicates Developing Neuron Populations in Genetic Risk for Schizophrenia.

Journal: Biological psychiatry

Authors' code: neurogenomics/MAGMA_Celltyping (no license)

Status: code verified, 159 files readable, 2 matches

[43318] doi:10.1016/j.ebiom.2022.104161 [paper, repository]

Genome-wide association meta-analysis of 88,250 individuals highlights pleiotropic mechanisms of five ocular diseases in UK Biobank.

Journal: EBioMedicine

Authors' code: xuezhengbo/Pleiotropy (no license)

Status: code verified, 19 files readable, 10 matches

[43319] doi:10.1016/j.redox.2022.102403 [paper, data]

The Q-junction and the inflammatory response are critical pathological and therapeutic factors in CoQ deficiency.

Journal: Redox biology

Status: data only, 1 dataset cited

[43320] doi:10.1038/s41467-022-29594-w [paper, data]

Cryo-EM structure of the human Kv3.1 channel reveals gating control by the cytoplasmic T1 domain.

Journal: Nature communications

Status: data only, 1 dataset cited

[43321] doi:10.1038/s41467-022-31566-z [paper]

SLITRK2 variants associated with neurodevelopmental disorders impair excitatory synaptic function and cognition in mice.

Journal: Nature communications

Status: code on request

[43322] doi:10.1038/s41467-022-31817-z [paper, data]

Inhibition of NMDA receptors through a membrane-to-channel path.

Journal: Nature communications

Status: data only, 2 datasets cited

[43323] doi:10.1038/s41598-022-16251-x [paper, repository]

The effects of probiotics on risk and time preferences.

Journal: Scientific reports

Authors' code: doi:10.17632/nbz385mhny.2 (no license)

Status: code verified

[43324] doi:10.1073/pnas.2110746119 [paper, data]

Therapeutic functions of astrocytes to treat α-synuclein pathology in Parkinson's disease.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 1 dataset cited

[43325] doi:10.1073/pnas.2202015119 [paper, data]

Sox9 directs divergent epigenomic states in brain tumor subtypes.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 1 dataset cited

[43326] doi:10.1097/md.0000000000029391 [paper, data]

Identification of a pyroptosis-related prognosis gene signature and its relationship with an immune microenvironment in gliomas.

Journal: Medicine

Status: data only, 1 dataset cited

[43327] doi:10.1126/sciadv.abm1971 [paper, repository]

Mapping microstructural gradients of the human striatum in normal aging and Parkinson's disease.

Journal: Science advances

Authors' code: mezera/mrQ (MIT), MezerLab/mrGrad (no license), Zenodo 5920358 (other-open)

Status: code verified, 175 files readable, 5 matches

[43328] doi:10.1155/2022/1279945 [paper, data]

Leveraging a Neuroevolutionary Approach for Classifying Violent Behavior in Video.

Journal: Computational intelligence and neuroscience

Status: data only, 1 dataset cited

[43329] doi:10.1186/s10194-022-01452-6 [paper, data]

Gamma-aminobutyric acid and glutamate/glutamine levels in the dentate nucleus and periaqueductal gray with episodic and chronic migraine: a proton magnetic resonance spectroscopy study.

Journal: The journal of headache and pain

Status: data only, 1 dataset cited

[43330] doi:10.1186/s12868-022-00731-x [paper, data]

Motor training is improved by concurrent application of slow oscillating transcranial alternating current stimulation to motor cortex.

Journal: BMC neuroscience

Status: data only, 1 dataset cited

[43331] doi:10.1186/s12974-022-02541-8 [paper, data]

Increased levels of a pro-inflammatory IgG receptor in the midbrain of people with schizophrenia.

Journal: Journal of neuroinflammation

Status: data only, 2 datasets cited

[43332] doi:10.1186/s13024-022-00551-x [paper, repository]

17q21.31 sub-haplotypes underlying H1-associated risk for Parkinson's disease are associated with LRRC37A/2 expression in astrocytes.

Journal: Molecular neurodegeneration

Authors' code: ricardovialle/WGS-QC-Pipeline (no license)

Status: code verified, 7 files readable, 1 match

[43333] doi:10.1186/s13046-022-02431-0 [paper, data]

PDIA3P1 promotes Temozolomide resistance in glioblastoma by inhibiting C/EBPβ degradation to facilitate proneural-to-mesenchymal transition.

Journal: Journal of experimental & clinical cancer research : CR

Status: data only, 4 datasets cited

[43334] doi:10.3389/fgene.2022.906174 [paper, data]

A Pan-Cancer Analysis of the Oncogenic Role of <i>BCL7B</i>: A Potential Biomarker for Prognosis and Immunotherapy.

Journal: Frontiers in genetics

Status: data only, 1 dataset cited

[43335] doi:10.3389/fimmu.2022.946692 [paper]

Predictive value of PIMREG in the prognosis and response to immune checkpoint blockade of glioma patients.

Journal: Frontiers in immunology

Status: data only

[43336] doi:10.3389/fncel.2022.906534 [paper, data]

Abnormal spontaneous neural activity in hippocampal-cortical system of patients with obsessive-compulsive disorder and its potential for diagnosis and prediction of early treatment response.

Journal: Frontiers in cellular neuroscience

Status: data only, 3 datasets cited

[43337] doi:10.3389/fnins.2022.841145 [paper, data]

Identification of cortical interneuron cell markers in mouse embryos based on machine learning analysis of single-cell transcriptomics.

Journal: Frontiers in neuroscience

Status: data only, 1 dataset cited

[43338] doi:10.3389/fphar.2022.898360 [paper, data]

Zi Shen Wan Fang Attenuates Neuroinflammation and Cognitive Function <i>Via</i> Remodeling the Gut Microbiota in Diabetes-Induced Cognitive Impairment Mice.

Journal: Frontiers in pharmacology

Status: data only, 1 dataset cited

[43339] doi:10.3390/cancers14143441 [paper, repository]

An Open-Source AI Framework for the Analysis of Single Cells in Whole-Slide Images with a Note on CD276 in Glioblastoma.

Journal: Cancers

Authors' code: guoqingbao/pathofusion (Apache-2.0)

Status: code verified, 72 files readable, 4 matches

[43340] doi:10.3390/jcm11144119 [paper, data]

Fecal Microbiota Transplantation as New Therapeutic Avenue for Human Diseases.

Journal: Journal of clinical medicine

Status: data only, 1 dataset cited

[43341] doi:10.7554/elife.78542 [paper, repository]

Brain-wide screen of prelimbic cortex inputs reveals a functional shift during early fear memory consolidation.

Journal: eLife

Authors' code: supp:PMC9286739/elife-78542-code1.zip (no license)

Status: empty repository

[43342] doi:10.7717/peerj.13523 [paper, data]

Muscone improves hypoxia/reoxygenation (H/R)-induced neuronal injury by blocking HMGB1/TLR4/NF-κB pathway <i>via</i> modulating microRNA-142.

Journal: PeerJ

Status: data only, 1 dataset cited

Thursday, 14 July 2022 (26 papers)

[43343] doi:10.1002/hbm.26013 [paper, repository]

The age-related changes in 40 Hz Auditory Steady-State Response and sustained Event-Related Fields to the same amplitude-modulated tones in typically developing children: A magnetoencephalography study.

Journal: Human brain mapping

Authors' code: giorgioarcara/meg-lab-sc-code (MIT), OSF 2ga6h (no license)

Status: code verified, 107 files readable, 4 matches

[43344] doi:10.1007/s10143-022-01832-1 [paper]

The effect of smoking on survival in lung carcinoma patients with brain metastasis: a systematic review and meta-analysis.

Journal: Neurosurgical review

Status: code on request

[43345] doi:10.1016/j.neuroimage.2022.119451 [paper, repository]

Detecting abnormal connectivity in schizophrenia via a joint directed acyclic graph estimation model.

Journal: NeuroImage

Authors' code: xunzheng/notears (Apache-2.0), gmeng92/joint-notears (no license)

Status: code verified, 16 files readable, 5 matches

[43346] doi:10.1016/j.neuroimage.2022.119457 [paper, repository]

Decoding the temporal dynamics of spoken word and nonword processing from EEG.

Journal: NeuroImage

Authors' code: OSF wa3qr (no license)

Status: code verified, 39 files readable, 1 match

[43347] doi:10.1016/j.neuroimage.2022.119476 [paper, repository]

BOLD cofluctuation 'events' are predicted from static functional connectivity.

Journal: NeuroImage

Authors' code: GrattonLab/MSC_ROI_data (no license), GrattonLab/Ladwig_2022_Events_Static_FC (no license)

Status: code verified, 13 files readable, 1 match

[43348] doi:10.1016/j.neuroimage.2022.119485 [paper, data]

Proportional intracranial volume correction differentially biases behavioral predictions across neuroanatomical features, sexes, and development.

Journal: NeuroImage

Status: data only, 2 datasets cited

[43349] doi:10.1016/j.nicl.2022.103113 [paper, repository]

Non-invasive brain stimulation modulates neural correlates of performance monitoring in patients with obsessive-compulsive disorder.

Journal: NeuroImage. Clinical

Authors' code: OSF 7z8hj (no license)

Status: code verified, 11 files readable, 11 matches

[43350] doi:10.1021/acs.jmedchem.2c00741 [paper, data]

Design and Discovery of MRTX0902, a Potent, Selective, Brain-Penetrant, and Orally Bioavailable Inhibitor of the SOS1:KRAS Protein-Protein Interaction.

Journal: Journal of medicinal chemistry

Status: data only, 1 dataset cited

[43351] doi:10.1021/acsomega.2c02285 [paper, data]

Free Radical Chain Reactions and Polyunsaturated Fatty Acids in Brain Lipids.

Journal: ACS omega

Status: data only, 2 datasets cited

[43352] doi:10.1038/s41598-022-14904-5 [paper, repository]

Tissue volume estimation and age prediction using rapid structural brain scans.

Journal: Scientific reports

Authors' code: james-cole/brainageR (LGPL-3.0), frantisekvasa/epimix_volume_brain_age (MIT), Zenodo 3476365 (other-open)

Status: code verified, 12 files readable, 1 match

[43353] doi:10.1038/s41598-022-16219-x [paper, data]

A rationally identified panel of microRNAs targets multiple oncogenic pathways to enhance chemotherapeutic effects in glioblastoma models.

Journal: Scientific reports

Status: data only, 1 dataset cited

[43354] doi:10.1038/s42003-022-03654-9 [paper, data]

Combined MEK and JAK/STAT3 pathway inhibition effectively decreases SHH medulloblastoma tumor progression.

Journal: Communications biology

Status: data only, 1 dataset cited

[43355] doi:10.1073/pnas.2121095119 [paper, data]

Optogenetic stimulation of pre-Bötzinger complex reveals novel circuit interactions in swallowing-breathing coordination.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 1 dataset cited

[43356] doi:10.1162/nol_a_00071 [paper, data]

Differential Tracking of Linguistic vs. Mental State Content in Naturalistic Stimuli by Language and Theory of Mind (ToM) Brain Networks.

Journal: Neurobiology of language (Cambridge, Mass.)

Status: data only, 1 dataset cited

[43357] doi:10.1186/s12859-022-04776-x [paper, data]

Impaired time-distance reconfiguration patterns in Alzheimer's disease: a dynamic functional connectivity study with 809 individuals from 7 sites.

Journal: BMC bioinformatics

Status: data only, 1 dataset cited

[43358] doi:10.1186/s13148-022-01310-x [paper, repository]

Maternal-fetal stress and DNA methylation signatures in neonatal saliva: an epigenome-wide association study.

Journal: Clinical epigenetics

Authors' code: ascgitlab.helmholtz-muenchen.de/ritika.sharma/felicity-project (no license)

Status: code found, still to be checked

[43359] doi:10.1186/s40537-022-00643-x [paper, data]

Tumor antigens and immune subtypes of glioblastoma: the fundamentals of mRNA vaccine and individualized immunotherapy development.

Journal: Journal of big data

Status: data only, 6 datasets cited

[43360] doi:10.1371/journal.pbio.3001713 [paper, data]

Neural dynamics differentially encode phrases and sentences during spoken language comprehension.

Journal: PLoS biology

Status: data only, 1 dataset cited

[43361] doi:10.1371/journal.pmed.1004039 [paper, data]

Associations between moderate alcohol consumption, brain iron, and cognition in UK Biobank participants: Observational and mendelian randomization analyses.

Journal: PLoS medicine

Status: data only, 1 dataset cited

[43362] doi:10.1371/journal.pone.0269544 [paper, repository]

Unsupervised deep learning supports reclassification of Bronze age cypriot writing system.

Journal: PloS one

Authors' code: ashmikuz/sign2vec_d (CC-BY-NC-4.0)

Status: code verified, 23 files readable, 2 matches

[43363] doi:10.1523/eneuro.0066-22.2022 [paper, repository]

Navigating the Statistical Minefield of Model Selection and Clustering in Neuroscience.

Journal: eNeuro

Authors' code: kiralyb/model_selection_mines (CC0-1.0)

Status: code verified, 9 files readable, 11 matches

[43364] doi:10.3389/fpsyt.2022.950455 [paper, data]

Is Brain-Derived Neurotropic Factor Methylation Involved in the Association Between Prenatal Stress and Maternal Postnatal Anxiety During the COVID-19 Pandemic?

Journal: Frontiers in psychiatry

Status: data only, 2 datasets cited

[43365] doi:10.3390/cells11142203 [paper, repository]

Differential Susceptibility of Retinal Neurons to the Loss of Mitochondrial Biogenesis Factor Nrf1.

Journal: Cells

Authors' code: alexdobin/STAR (MIT)

Status: code verified, 331 files readable

[43366] doi:10.3390/jdb10030030 [paper, data]

Acetaminophen Disrupts the Development of Pharyngeal Arch-Derived Cartilage and Muscle in Zebrafish.

Journal: Journal of developmental biology

Status: data only, 15 datasets cited

[43367] doi:10.3390/mi13071104 [paper, data]

Optimized Design of a Self-Biased Amplifier for Seizure Detection Supplied by Piezoelectric Nanogenerator: Metaheuristic Algorithms versus ANN-Assisted Goal Attainment Method.

Journal: Micromachines

Status: data only, 1 dataset cited

[43368] doi:10.7554/elife.77468 [paper, repository]

Neural tracking of phrases in spoken language comprehension is automatic and task-dependent.

Journal: eLife

Authors' code: data.donders.ru.nl/collections/di (no license)

Status: code verified

Wednesday, 13 July 2022 (29 papers)

[43369] doi:10.1002/ejp.2000 [paper, repository]

The impact of chronic pain on creative ideation: An examination of the underlying attention-related psychophysiological mechanisms.

Journal: European journal of pain (London, England)

Authors' code: OSF 5g497 (no license)

Status: code verified, 2 files readable, 3 matches

[43370] doi:10.1002/hbm.26004 [paper]

Superficial white matter microstructure affects processing speed in cerebral small vessel disease.

Journal: Human brain mapping

Status: code on request

[43371] doi:10.1007/s12035-022-02949-6 [paper, data]

TOP2B Is Required to Maintain the Adrenergic Neural Phenotype and for ATRA-Induced Differentiation of SH-SY5Y Neuroblastoma Cells.

Journal: Molecular neurobiology

Status: data only, 1 dataset cited

[43372] doi:10.1016/j.csbj.2022.07.018 [paper, data]

Gene expression data analysis using Hellinger correlation in weighted gene co-expression networks (WGCNA).

Journal: Computational and structural biotechnology journal

Status: data only, 7 datasets cited

[43373] doi:10.1016/j.isci.2022.104754 [paper]

The endoplasmic reticulum membrane complex promotes proteostasis of GABA_A receptors.

Journal: iScience

Status: code on request

[43374] doi:10.1016/j.neuroimage.2022.119440 [paper, repository]

Evidence suggesting common mechanisms underlie contralateral and ipsilateral negative BOLD responses in the human visual cortex.

Journal: NeuroImage

Authors' code: qnlab.weill.cornell.edu/research/pre-processing-fmri-data (no license), QuantitativeNeuroimagingLaboratory (no license)

Status: code verified

[43375] doi:10.1016/j.xpro.2022.101532 [paper, repository]

Monitoring neural activity during sleep/wake events in adult C. elegans by automated sleep detection and stimulation.

Journal: STAR protocols

Authors' code: albrechtLab/ClosedLoopStimulation (no license), albrechtlab.github.io (no license), Zenodo 6629830 (other-open), albrechtLab/Neurotracker (no license), Zenodo 6632736 (other-open)

Status: code verified, 8 files readable, 1 match

[43376] doi:10.1038/s41467-022-30457-7 [paper, data]

2.7 Å cryo-EM structure of ex vivo RML prion fibrils.

Journal: Nature communications

Status: data only, 2 datasets cited

[43377] doi:10.1038/s41467-022-30458-6 [paper, data]

Cryo-EM structure of anchorless RML prion reveals variations in shared motifs between distinct strains.

Journal: Nature communications

Status: data only, 1 dataset cited

[43378] doi:10.1038/s41586-022-04925-5 [paper, repository]

Visual recognition of social signals by a tectothalamic neural circuit.

Journal: Nature

Authors' code: mpinbaierlab/kappeletal2022 (no license)

Status: code verified, 46 files readable, 6 matches

[43379] doi:10.1038/s41586-022-04954-0 [paper, repository]

Dopamine subsystems that track internal states.

Journal: Nature

Authors' code: mathworks.com/products/matlab (no license)

Status: code verified

[43380] doi:10.1083/jcb.202110057 [paper, repository]

JIP3 interacts with dynein and kinesin-1 to regulate bidirectional organelle transport.

Journal: The Journal of cell biology

Authors' code: sokrypton/colabfold (MIT)

Status: code verified, 74 files readable, 4 matches

[43381] doi:10.1098/rspb.2022.0844 [paper, repository]

Brain morphology correlates of learning and cognitive flexibility in a fish species (<i>Poecilia reticulata</i>).

Journal: Proceedings. Biological sciences

Authors' code: figshare 14406320 (CC-BY-4.0), doi:10.6084/m9.figshare.c.6060607 (no license)

Status: code verified, 2 files readable, 1 match

[43382] doi:10.1111/jfb.15142 [paper, data]

Social isolation affects intra-specific interaction behaviour and reduces the size of the cerebellar brain region in juvenile Atlantic salmon Salmo salar.

Journal: Journal of fish biology

Status: data only, 1 dataset cited

[43383] doi:10.1111/jsr.13698 [paper, data]

Abnormal brain iron accumulation in obstructive sleep apnea: A quantitative MRI study in the HypnoLaus cohort.

Journal: Journal of sleep research

Status: data only, 2 datasets cited

[43384] doi:10.1126/sciadv.abm2219 [paper, repository]

Reassessing hierarchical correspondences between brain and deep networks through direct interface.

Journal: Science advances

Authors' code: brain-score/brain-score (MIT)

Status: code verified, 2,000 files readable, 8 matches

[43385] doi:10.1523/jneurosci.0089-22.2022 [paper, repository]

Somatic Genetics Analysis of Sleep in Adult Mice.

Journal: The Journal of neuroscience : the official journal of the Society for Neuroscience

Authors' code: wochiguodong/SleepV (no license)

Status: code verified

[43386] doi:10.3389/fgene.2022.960388 [paper, repository]

Identification of Vesicle Transport Proteins <i>via</i> Hypergraph Regularized K-Local Hyperplane Distance Nearest Neighbour Model.

Journal: Frontiers in genetics

Authors' code: ferryvan/HG-HKNN (no license)

Status: dead link

[43387] doi:10.3389/fnagi.2022.837770 [paper, data]

Application of weighted co-expression network analysis and machine learning to identify the pathological mechanism of Alzheimer's disease.

Journal: Frontiers in aging neuroscience

Status: data only, 1 dataset cited

[43388] doi:10.3389/fnagi.2022.934224 [paper, data]

Brain Region- and Age-Dependent 5-Hydroxymethylcytosine Activity in the Non-Human Primate.

Journal: Frontiers in aging neuroscience

Status: data only, 2 datasets cited

[43389] doi:10.3389/fneur.2022.877386 [paper]

Developing an Asymmetry Method for Detecting Postictal Hyperperfusion in Poststroke Epilepsy.

Journal: Frontiers in neurology

Status: code on request

[43390] doi:10.3389/fninf.2022.855765 [paper]

A Spiking Neural Network Builder for Systematic Data-to-Model Workflow.

Journal: Frontiers in neuroinformatics

Status: code on request

[43391] doi:10.3389/fnint.2022.756604 [paper]

Multi-Data Integration Towards a Global Understanding of the Neurological Impact of Human Brain Severe Acute Respiratory Syndrome Coronavirus 2 Infection.

Journal: Frontiers in integrative neuroscience

Status: data only

[43392] doi:10.3389/fphar.2022.920449 [paper, data]

Preclinical Evaluation of Fingolimod in Rodent Models of Stroke With Age or Atherosclerosis as Comorbidities.

Journal: Frontiers in pharmacology

Status: data only, 1 dataset cited

[43393] doi:10.3389/frai.2022.903875 [paper, repository]

Benchmarking Perturbation-Based Saliency Maps for Explaining Atari Agents.

Journal: Frontiers in artificial intelligence

Authors' code: belimmer/PerturbationSaliencyEvaluation (no license), sicara/tf-explain (MIT)

Status: code verified, 92 files readable, 13 matches

[43394] doi:10.3390/biology11071053 [paper, repository]

Chromosome-Level Genome Assembly and Transcriptome Comparison Analysis of <i>Cephalopholis sonnerati</i> and Its Related Grouper Species.

Journal: Biology

Authors' code: TransDecoder/TransDecoder (BSD-3-Clause)

Status: code verified, 60 files readable, 1 match

[43395] doi:10.3390/biomedicines10071687 [paper, data]

Differential Neuropathology, Genetics, and Transcriptomics in Two Kindred Cases with Alzheimer's Disease and Lewy Body Dementia.

Journal: Biomedicines

Status: data only, 1 dataset cited

[43396] doi:10.3390/cancers14143402 [paper]

Long-Term Treatment with Bortezomib Induces Specific Methylation Changes in Differentiated Neuronal Cells.

Journal: Cancers

Status: data only

[43397] doi:10.7554/elife.72440 [paper, repository]

Intracerebral mechanisms explaining the impact of incidental feedback on mood state and risky choice.

Journal: eLife

Authors' code: romane-cecchi/publications-code/2022-ieeg-mood-and-risky-choice (MIT)

Status: code verified, 13 files readable, 6 matches

Tuesday, 12 July 2022 (27 papers)

[43398] doi:10.1002/btm2.10360 [paper, data]

Neuroprotective activity of a virus-safe nanofiltered human platelet lysate depleted of extracellular vesicles in Parkinson's disease and traumatic brain injury models.

Journal: Bioengineering & translational medicine

Status: data only, 1 dataset cited

[43399] doi:10.1002/pros.24411 [paper, data]

Increased cytokine gene expression and cognition risk associated with androgen deprivation therapy.

Journal: The Prostate

Status: data only, 1 dataset cited

[43400] doi:10.1007/s10548-022-00904-1 [paper, repository]

Functional localization of audiovisual speech using near infrared spectroscopy.

Journal: Brain topography

Authors' code: LABSN-pubs/2022-BrainTopogr-fNIRS-AV (BSD-3-Clause)

Status: code verified, 4 files readable, 3 matches

[43401] doi:10.1007/s12031-022-02047-1 [paper, data]

Role of Chemokines in the Development and Progression of Alzheimer's Disease.

Journal: Journal of molecular neuroscience : MN

Status: data only, 1 dataset cited

[43402] doi:10.1016/j.ajhg.2022.06.008 [paper, repository]

Bi-allelic loss-of-function variants in PPFIBP1 cause a neurodevelopmental disorder with microcephaly, epilepsy, and periventricular calcifications.

Journal: American journal of human genetics

Authors' code: Tierpsy (no license), Tom-OBrien/Phenotyping-hlb1-disease-model-mutant (no license)

Status: code verified, 8 files readable, 1 match

[43403] doi:10.1016/j.dcn.2022.101134 [paper, repository]

Spatiotemporal dynamics of EEG microstates in four- to eight-year-old children: Age- and sex-related effects.

Journal: Developmental cognitive neuroscience

Authors' code: DEEDLabEEG (no license)

Status: code verified

[43404] doi:10.1038/s41597-022-01508-x [paper, repository]

An atlas of endogenous DNA double-strand breaks arising during human neural cell fate determination.

Journal: Scientific data

Authors' code: figshare 18530531 (CC-BY-4.0), BiCroLab/NatSciData_Neuro (MIT), elgw/sci_data_20220516 (no license)

Status: code verified, 10 files readable, 6 matches

[43405] doi:10.1038/s41598-022-15587-8 [paper, data]

The cortical thickness of the area PF of the left inferior parietal cortex mediates technical-reasoning skills.

Journal: Scientific reports

Status: data only, 1 dataset cited

[43406] doi:10.1038/s42003-022-03526-2 [paper, repository]

Suppression without inhibition: how retinal computation contributes to saccadic suppression.

Journal: Communications biology

Authors' code: saadidrees/saccadic-suppression (no license), Zenodo 6562460 (other-open)

Status: code verified, 24 files readable, 9 matches

[43407] doi:10.1073/pnas.2117090119 [paper, data]

Specialization of the photoreceptor transcriptome by &lt;i&gt;Srrm3&lt;/i&gt;-dependent microexons is required for outer segment maintenance and vision.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 1 dataset cited

[43408] doi:10.1111/evo.14547 [paper, data]

Neuroanatomical shifts mirror patterns of ecological divergence in three diverse clades of mimetic butterflies.

Journal: Evolution; international journal of organic evolution

Status: data only, 1 dataset cited

[43409] doi:10.1186/s12974-022-02548-1 [paper, data]

MicroRNA-22-3p ameliorates Alzheimer's disease by targeting SOX9 through the NF-κB signaling pathway in the hippocampus.

Journal: Journal of neuroinflammation

Status: data only, 11 datasets cited

[43410] doi:10.1212/nxi.0000000000200015 [paper, data]

Immune and Genetic Signatures of Breast Carcinomas Triggering Anti-Yo-Associated Paraneoplastic Cerebellar Degeneration.

Journal: Neurology(R) neuroimmunology & neuroinflammation

Status: data only, 1 dataset cited

[43411] doi:10.1371/journal.pone.0271311 [paper, data]

Cerebellar transcranial direct current stimulation disrupts neuroplasticity of intracortical motor circuits.

Journal: PloS one

Status: data only, 1 dataset cited

[43412] doi:10.1523/eneuro.0519-21.2022 [paper, repository]

Learning Spatiotemporal Properties of Hippocampal Place Cells.

Journal: eNeuro

Authors' code: yanbolian/Learning-Spatiotemporal-Properties-of-Hippocampal-Place-Cells (no license)

Status: code verified, 26 files readable, 6 matches

[43413] doi:10.3389/fnins.2022.963082 [paper, data]

A Hierarchical Graph Learning Model for Brain Network Regression Analysis.

Journal: Frontiers in neuroscience

Status: data only, 1 dataset cited

[43414] doi:10.3389/fnmol.2022.900057 [paper, data]

A New Perspective on the Pathophysiology of Idiopathic Intracranial Hypertension: Role of the Glia-Neuro-Vascular Interface.

Journal: Frontiers in molecular neuroscience

Status: data only, 4 datasets cited

[43415] doi:10.3389/fpain.2022.868546 [paper, data]

Persistent Non-pharmacological Pain Management and Brain-Predicted Age Differences in Middle-Aged and Older Adults With Chronic Knee Pain.

Journal: Frontiers in pain research (Lausanne, Switzerland)

Status: data only, 1 dataset cited

[43416] doi:10.3389/fphar.2022.919630 [paper, data]

Pharmacokinetics of Cannabis and Its Derivatives in Animals and Humans During Pregnancy and Breastfeeding.

Journal: Frontiers in pharmacology

Status: data only, 2 datasets cited

[43417] doi:10.3389/fragi.2022.931331 [paper, data]

Pathobiology of the Klotho Antiaging Protein and Therapeutic Considerations.

Journal: Frontiers in aging

Status: data only, 1 dataset cited

[43418] doi:10.3390/brainsci12070908 [paper, repository]

Identifying Non-Math Students from Brain MRIs with an Ensemble Classifier Based on Subspace-Enhanced Contrastive Learning.

Journal: Brain sciences

Authors' code: ypzhaang/clr (no license)

Status: code verified, 10 files readable, 4 matches

[43419] doi:10.3390/v14071520 [paper, data]

Multiple Receptors Involved in Invasion and Neuropathogenicity of Canine Distemper Virus: A Review.

Journal: Viruses

Status: data only, 1 dataset cited

[43420] doi:10.3892/etm.2022.11502 [paper, data]

X-linked adrenoleukodystrophy caused by maternal ABCD1 mutation and paternal X chromosome inactivation.

Journal: Experimental and therapeutic medicine

Status: data only, 1 dataset cited

[43421] doi:10.7554/elife.73461 [paper, data]

Morphometric analysis of lungfish endocasts elucidates early dipnoan palaeoneurological evolution.

Journal: eLife

Status: data only, 1 dataset cited

[43422] doi:10.7554/elife.75804 [paper, data]

Exploring the expression patterns of palmitoylating and de-palmitoylating enzymes in the mouse brain using the curated RNA-seq database BrainPalmSeq.

Journal: eLife

Status: data only, 1 dataset cited

[43423] doi:10.7554/elife.77953 [paper, repository]

BK channel properties correlate with neurobehavioral severity in three <i>KCNMA1</i>-linked channelopathy mouse models.

Journal: eLife

Authors' code: supp:PMC9275823/elife-77953-code1.zip (no license)

Status: empty repository

[43424] doi:10.7717/peerj.13734 [paper, data]

Automated detection and removal of flat line segments and large amplitude fluctuations in neonatal electroencephalography.

Journal: PeerJ

Status: data only, 1 dataset cited

Monday, 11 July 2022 (24 papers)

[43425] doi:10.1007/s00018-022-04444-6 [paper, data]

Altered m6A RNA methylation contributes to hippocampal memory deficits in Huntington's disease mice.

Journal: Cellular and molecular life sciences : CMLS

Status: data only, 5 datasets cited

[43426] doi:10.1007/s10827-022-00826-8 [paper, repository]

Thalamocortical bistable switch as a theoretical model of fibromyalgia pathogenesis inferred from a literature survey.

Journal: Journal of computational neuroscience

Authors' code: giuliagiordano.dii.unitn.it/docs/papers (no license)

Status: code found, still to be checked

[43427] doi:10.1016/j.crmeth.2022.100253 [paper]

Rapid 3D-STORM imaging of diverse molecular targets in tissue.

Journal: Cell reports methods

Status: code on request

[43428] doi:10.1016/j.jbc.2022.102254 [paper, repository]

Profiling 26,000 Aplysia californica neurons by single cell mass spectrometry reveals neuronal populations with distinct neuropeptide profiles.

Journal: The Journal of biological chemistry

Authors' code: richardxie1119/DATSIGMA (MIT)

Status: code verified, 35 files readable, 2 matches

[43429] doi:10.1021/acschemneuro.2c00139 [paper, repository]

Computational Assessment of Different Structural Models for Claudin-5 Complexes in Blood-Brain Barrier Tight Junctions.

Journal: ACS chemical neuroscience

Authors' code: membrane.urmc.rochester.edu/content/wham (no license)

Status: code verified

[43430] doi:10.1038/s41593-022-01107-4 [paper]

Reduced neural feedback signaling despite robust neuron and gamma auditory responses during human sleep.

Journal: Nature neuroscience

Status: code on request

[43431] doi:10.1038/s41598-022-14959-4 [paper, data]

An ALE meta-analytic review of musical expertise.

Journal: Scientific reports

Status: data only, 1 dataset cited

[43432] doi:10.1038/s41598-022-15885-1 [paper, data]

Whole-genome sequencing reveals de-novo mutations associated with nonsyndromic cleft lip/palate.

Journal: Scientific reports

Status: data only, 1 dataset cited

[43433] doi:10.1039/d2ra03497b [paper, data]

Selectivity profile comparison for certain γ-butyrolactone and oxazolidinone-based ligands on a sigma 2 receptor over sigma 1: a molecular docking approach.

Journal: RSC advances

Status: data only, 1 dataset cited

[43434] doi:10.1073/pnas.2202269119 [paper, data]

Yoda1's energetic footprint on Piezo1 channels and its modulation by voltage and temperature.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 1 dataset cited

[43435] doi:10.1073/pnas.2203032119 [paper, data]

Two distinct evolutionary conserved neural degeneration pathways characterized in a colonial chordate.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 1 dataset cited

[43436] doi:10.1098/rstb.2021.0118 [paper, data]

Effect of sex and autism spectrum disorder on oxytocin receptor binding and mRNA expression in the dopaminergic pars compacta of the human substantia nigra.

Journal: Philosophical transactions of the Royal Society of London. Series B, Biological sciences

Status: data only, 2 datasets cited

[43437] doi:10.1117/1.nph.9.3.030801 [paper, repository]

Systemic physiology augmented functional near-infrared spectroscopy: a powerful approach to study the embodied human brain.

Journal: Neurophotonics

Authors' code: BUNPC/Homer3 (BSD-2-Clause)

Status: code verified, 494 files readable, 2 matches

[43438] doi:10.1155/2022/9016401 [paper, repository]

TiM-Net: Transformer in M-Net for Retinal Vessel Segmentation.

Journal: Journal of healthcare engineering

Authors' code: ZX-ECJTU/TiM-Net (no license)

Status: code verified, 7 files readable, 1 match

[43439] doi:10.1186/s12974-022-02539-2 [paper, data]

Modulation of C5a-C5aR1 signaling alters the dynamics of AD progression.

Journal: Journal of neuroinflammation

Status: data only, 1 dataset cited

[43440] doi:10.1186/s13195-022-01035-2 [paper, data]

The impact of subthreshold levels of amyloid deposition on conversion to dementia in patients with amyloid-negative amnestic mild cognitive impairment.

Journal: Alzheimer's research & therapy

Status: data only, 3 datasets cited

[43441] doi:10.1371/journal.pcbi.1010294 [paper, repository]

Thalamic deep brain stimulation paradigm to reduce consciousness: Cortico-striatal dynamics implicated in mechanisms of consciousness.

Journal: PLoS computational biology

Authors' code: OSF nfa87 (no license), ibglab.org/sarge (no license), chonux.org (no license)

Status: code verified, 170 files readable, 1 match

[43442] doi:10.14336/ad.2022.0103 [paper]

MiR-4763-3p targeting <i>RASD2</i>as a Potential Biomarker and Therapeutic Target for Schizophrenia.

Journal: Aging and disease

Status: data only

[43443] doi:10.15252/embj.2021108780 [paper, repository]

Schwann cell precursors represent a neural crest-like state with biased multipotency.

Journal: The EMBO journal

Authors' code: LouisFaure/glialfates_paper (no license)

Status: code verified, 7 files readable, 3 matches

[43444] doi:10.3389/fped.2022.925340 [paper, data]

Case Report: Primary Leptomeningeal Medulloblastoma in a Child: Clinical Case Report and Literature Review.

Journal: Frontiers in pediatrics

Status: data only, 1 dataset cited

[43445] doi:10.3389/fragi.2022.899744 [paper, data]

Auxin-Inducible Degron System Reveals Temporal-Spatial Roles of HSF-1 and Its Transcriptional Program in Lifespan Assurance.

Journal: Frontiers in aging

Status: data only, 1 dataset cited

[43446] doi:10.3390/jpm12071126 [paper, data]

Pathophysiology, Classification and Comorbidities after Traumatic Spinal Cord Injury.

Journal: Journal of personalized medicine

Status: data only, 1 dataset cited

[43447] doi:10.7554/elife.68035 [paper, repository]

The human amniotic epithelium confers a bias to differentiate toward the neuroectoderm lineage in human embryonic stem cells.

Journal: eLife

Authors' code: MaayanLab/biojupies (CC-BY-NC-SA-4.0)

Status: code verified, 45 files readable, 2 matches

[43448] doi:10.7554/elife.76039 [paper, data]

Non-uniform distribution of dendritic nonlinearities differentially engages thalamostriatal and corticostriatal inputs onto cholinergic interneurons.

Journal: eLife

Status: data only, 1 dataset cited

Sunday, 10 July 2022 (2 papers)

[43449] doi:10.1002/hbm.26000 [paper, repository]

On predictability of individual functional connectivity networks from clinical characteristics.

Journal: Human brain mapping

Authors' code: EmilyLMorris/ImagingPred (no license)

Status: code verified, 6 files readable

[43450] doi:10.3390/s22145162 [paper, data]

Dynamic Connectivity Analysis Using Adaptive Window Size.

Journal: Sensors (Basel, Switzerland)

Status: data only, 1 dataset cited

Saturday, 9 July 2022 (8 papers, 6 on this page)

[43451] doi:10.1002/hbm.26006 [paper]

Driving brain state transitions in major depressive disorder through external stimulation.

Journal: Human brain mapping

Status: code on request

[43452] doi:10.1016/j.heliyon.2022.e09899 [paper, data]

Cognitive impairment in the co-occurrence of alcohol dependence and major depression: neuropsychological assessment and event-related potentials analyses.

Journal: Heliyon

Status: data only, 1 dataset cited

[43453] doi:10.1016/j.isci.2022.104737 [paper, repository]

Contralateral dominance to speech in the adult auditory cortex immediately after cochlear implantation.

Journal: iScience

Authors' code: mne.tools/mne-nirs (no license)

Status: code verified

[43454] doi:10.1016/j.isci.2022.104747 [paper, data]

Left-right asymmetry and attractor-like dynamics of dog's tail wagging during dog-human interactions.

Journal: iScience

Status: code on request, 1 dataset cited

[43455] doi:10.1016/j.neuroimage.2022.119461 [paper, repository]

Brain-wide neural co-activations in resting human.

Journal: NeuroImage

Authors' code: Donders-Institute/bidscoin (GPL-3.0)

Status: code verified, 61 files readable

[43456] doi:10.1038/s41386-022-01370-w [paper, data]

Synaptic plasticity and mental health: methods, challenges and opportunities.

Journal: Neuropsychopharmacology : official publication of the American College of Neuropsychopharmacology

Status: data only, 2 datasets cited

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