Every paper, by date: page 195

44,644 papers with a page: 24,189 with their authors' code, 4,955 with code on request, 15,495 with data only. The most recent first, 224 a page. Page 195 of 200: 9 July 2022 to 1 July 2022.

Saturday, 9 July 2022 (8 papers, 2 on this page)

[43457] doi:10.1038/s41467-022-31731-4 [paper, repository]

Compulsive alcohol drinking in rodents is associated with altered representations of behavioral control and seeking in dorsal medial prefrontal cortex.

Journal: Nature communications

Authors' code: figshare 19387511 (GPL 3.0+)

Status: code verified

[43458] doi:10.3390/ijms23147608 [paper, data]

Regulation of Inflammation-Related Genes through <i>Fosl1</i> Suppression in a Levetiracetam-Treated Pilocarpine-Induced Status Epilepticus Mouse Model.

Journal: International journal of molecular sciences

Status: data only, 1 dataset cited

Friday, 8 July 2022 (34 papers)

[43459] doi:10.1016/j.dib.2022.108454 [paper, data]

Dataset of brain functional connectome and its maturation in adolescents.

Journal: Data in brief

Status: data only, 3 datasets cited

[43460] doi:10.1016/j.isci.2022.104728 [paper, repository]

Patent bibliometric analysis for global trend of organoid technologies in the past decade.

Journal: iScience

Authors' code: figshare 26113051 (CC BY + CC0)

Status: code verified, 1 file readable

[43461] doi:10.1016/j.neuroimage.2022.119390 [paper, repository]

HAPPILEE: HAPPE In Low Electrode Electroencephalography, a standardized pre-processing software for lower density recordings.

Journal: NeuroImage

Authors' code: Zenodo 5 (no license), PINE-Lab/HAPPE (GPL-3.0)

Status: code verified, 2,000 files readable

[43462] doi:10.1016/j.preteyeres.2022.101093 [paper, data]

Cell fate decisions, transcription factors and signaling during early retinal development.

Journal: Progress in retinal and eye research

Status: data only, 7 datasets cited

[43463] doi:10.1016/j.ynstr.2022.100469 [paper, repository]

Perceived stress associations with hippocampal-dependent behavior and hippocampal subfield volume.

Journal: Neurobiology of stress

Authors' code: celstark/MST (no license)

Status: code verified, 21 files readable, 2 matches

[43464] doi:10.1038/s41467-022-31195-6 [paper, data]

Temperature elevations can induce switches to homoclinic action potentials that alter neural encoding and synchronization.

Journal: Nature communications

Status: data only, 1 dataset cited

[43465] doi:10.1038/s41467-022-31673-x [paper, data]

A luciferase prosubstrate and a red bioluminescent calcium indicator for imaging neuronal activity in mice.

Journal: Nature communications

Status: data only, 3 datasets cited

[43466] doi:10.1038/s41467-022-31675-9 [paper, repository]

Visual timing-tuned responses in human association cortices and response dynamics in early visual cortex.

Journal: Nature communications

Authors' code: vistalab/vistasoft (no license), benharvey/vistasoftAddOns (GPL-3.0), MvaOosterhuis/fMRI_preproc (CC-BY-4.0), evi-hendrikx/MonoTunedTiming (CC-BY-4.0), Zenodo 5811114 (other-open), Zenodo 5811116 (other-open), Zenodo 6417921 (other-open), jacobmpaul/vistasoftaddons (GPL-3.0), jacobmpaul/fmri_preproc (CC-BY-4.0)

Status: code verified, 2,545 files readable, 12 matches

[43467] doi:10.1038/s41467-022-31683-9 [paper, repository]

Pro-inflammatory cytokines mediate the epithelial-to-mesenchymal-like transition of pediatric posterior fossa ependymoma.

Journal: Nature communications

Authors' code: Zenodo 6607426 (other-open), camaralab/epn_classifier (GPL-3.0)

Status: code verified, 22 files readable, 3 matches

[43468] doi:10.1038/s41467-022-31747-w [paper, repository]

A calibratable sensory neuron based on epitaxial VO₂ for spike-based neuromorphic multisensory system.

Journal: Nature communications

Authors' code: billyuanpku96/SNN-for-sensory-neuron (no license)

Status: code verified, 4 files readable

[43469] doi:10.1038/s41531-022-00350-7 [paper, repository]

Diurnal modulation of subthalamic beta oscillatory power in Parkinson's disease patients during deep brain stimulation.

Journal: NPJ Parkinson's disease

Authors' code: joramvanrheede/circa_diem (no license), neuromodulation/perceive (Apache-2.0), Zenodo 5961105 (other-open), mrcbndu.ox.ac.uk/data-sharing-policy (no license)

Status: code verified, 168 files readable, 6 matches

[43470] doi:10.1038/s41597-022-01509-w [paper, repository]

EEG Dataset for RSVP and P300 Speller Brain-Computer Interfaces.

Journal: Scientific data

Authors' code: KyunghoWon-GIST/EEG-dataset-for-RSVP-P300-speller (MIT)

Status: code verified, 27 files readable, 5 matches

[43471] doi:10.1038/s41598-022-15763-w [paper, data]

Pupil drift rate indexes groove ratings.

Journal: Scientific reports

Status: data only, 1 dataset cited

[43472] doi:10.1038/s41598-022-15780-9 [paper, data]

Large-scale cortico-cerebellar computations for horizontal and vertical vergence in humans.

Journal: Scientific reports

Status: data only, 1 dataset cited

[43473] doi:10.1038/s44184-022-00006-7 [paper]

A corticostriatal pathway mediating self-efficacy enhancement.

Journal: Npj mental health research

Status: code on request

[43474] doi:10.1073/pnas.2122395119 [paper, data]

Neuronal population dynamics during motor plan cancellation in nonhuman primates.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 1 dataset cited

[43475] doi:10.1101/2022.07.07.499197 [paper, data]

Object-centered population coding in CA1 of the hippocampus

Journal: bioRxiv (preprint)

Status: data only, 1 dataset cited

[43476] doi:10.1186/s12864-022-08723-1 [paper, data]

Assessment of label-free quantification and missing value imputation for proteomics in non-human primates.

Journal: BMC genomics

Status: data only, 4 datasets cited

[43477] doi:10.12688/wellcomeopenres.17965.1 [paper, data]

Comparative analysis of potential broad-spectrum neuronal Cre drivers.

Journal: Wellcome open research

Status: data only, 1 dataset cited

[43478] doi:10.1371/journal.pcbi.1010257 [paper, repository]

Role of actin filaments and cis binding in cadherin clustering and patterning.

Journal: PLoS computational biology

Authors' code: cellsmb/coarsegrainedcadherinactindynamics (no license)

Status: empty repository, 1 file readable

[43479] doi:10.1371/journal.pcbi.1010272 [paper, repository]

Non-zero mean alpha oscillations revealed with computational model and empirical data.

Journal: PLoS computational biology

Authors' code: astudenova/bsi_matlab (no license)

Status: code verified, 5 files readable, 5 matches

[43480] doi:10.1371/journal.pone.0265860 [paper, data]

Dementia risk and dynamic response to exercise: A non-randomized clinical trial.

Journal: PloS one

Status: data only, 1 dataset cited

[43481] doi:10.1371/journal.pone.0268351 [paper, data]

Horizontal connectivity in V1: Prediction of coherence in contour and motion integration.

Journal: PloS one

Status: data only, 1 dataset cited

[43482] doi:10.1371/journal.pone.0270981 [paper, repository]

Molecular and electrophysiological features of GABAergic neurons in the dentate gyrus reveal limited homology with cortical interneurons.

Journal: PloS one

Authors' code: Zenodo 6723946 (MIT)

Status: code verified, 31 files readable, 3 matches

[43483] doi:10.3389/fgene.2022.909714 [paper, repository]

Network Embedding Across Multiple Tissues and Data Modalities Elucidates the Context of Host Factors Important for COVID-19 Infection.

Journal: Frontiers in genetics

Authors' code: cellmapslab/embed_multimodalNet (no license)

Status: code verified, 17 files readable, 3 matches

[43484] doi:10.3389/fgene.2022.919188 [paper, data]

The Classification and Prediction of Ferroptosis-Related Genes in ALS: A Pilot Study.

Journal: Frontiers in genetics

Status: data only, 4 datasets cited

[43485] doi:10.3389/fgene.2022.931938 [paper, data]

Identification of a Five-mRNA Signature as a Novel Potential Prognostic Biomarker for Glioblastoma by Integrative Analysis.

Journal: Frontiers in genetics

Status: data only, 1 dataset cited

[43486] doi:10.3389/fnhum.2022.930291 [paper, data]

Mental State Classification Using Multi-Graph Features.

Journal: Frontiers in human neuroscience

Status: data only, 1 dataset cited

[43487] doi:10.3389/fnins.2022.795683 [paper, repository]

The Spatiotemporal Dynamics of Cerebral Autoregulation in Functional Magnetic Resonance Imaging.

Journal: Frontiers in neuroscience

Authors' code: jrwhittaker/tcr_fmri_analysis_scripts (no license)

Status: code verified, 14 files readable, 3 matches

[43488] doi:10.3389/fnins.2022.929814 [paper, repository]

Dosing Transcranial Magnetic Stimulation of the Primary Motor and Dorsolateral Prefrontal Cortices With Multi-Scale Modeling.

Journal: Frontiers in neuroscience

Authors' code: ZsoltTuri/2019_rTMS-EEG (CC-BY-4.0), ZsoltTuri/2021_human_multi_scale_modeling (CC-BY-4.0)

Status: code verified, 863 files readable, 9 matches

[43489] doi:10.3389/fped.2022.880693 [paper, data]

Clinical Characteristics and Short-Term Prognosis of Children With Antibody-Mediated Autoimmune Encephalitis: A Single-Center Cohort Study.

Journal: Frontiers in pediatrics

Status: data only, 2 datasets cited

[43490] doi:10.3390/ph15070842 [paper, data]

The Protective Effect of Edaravone on TDP-43 Plus Oxidative Stress-Induced Neurotoxicity in Neuronal Cells: Analysis of Its Neuroprotective Mechanisms Using RNA Sequencing.

Journal: Pharmaceuticals (Basel, Switzerland)

Status: data only, 1 dataset cited

[43491] doi:10.3390/pharmaceutics14071435 [paper, repository]

Improving the Efficacy and Accessibility of Intracranial Viral Vector Delivery in Non-Human Primates.

Journal: Pharmaceutics

Authors' code: yazdanlab/ced_protocol_and_analysis (no license)

Status: code verified, 9 files readable

[43492] doi:10.7554/elife.74968 [paper, repository]

Intact <i>Drosophila</i> central nervous system cellular quantitation reveals sexual dimorphism.

Journal: eLife

Authors' code: Zenodo 6574838 (CC-BY-4.0), doi:10.5281/zenodo (no license)

Status: code verified, 1 file readable

Thursday, 7 July 2022 (32 papers)

[43493] doi:10.1002/dad2.12319 [paper, data]

Physical activity is associated with increased resting-state functional connectivity in networks predictive of cognitive decline in clinically unimpaired older adults.

Journal: Alzheimer's & dementia (Amsterdam, Netherlands)

Status: data only, 1 dataset cited

[43494] doi:10.1002/hbm.25996 [paper, repository]

Highly accurate retinotopic maps of the physiological blind spot in human visual cortex.

Journal: Human brain mapping

Authors' code: OSF 2rgsm (no license)

Status: code verified, 95 files readable, 9 matches

[43495] doi:10.1002/hbm.26001 [paper]

Regional gene expression patterns are associated with task-specific brain activation during reward and emotion processing measured with functional MRI.

Journal: Human brain mapping

Status: code on request

[43496] doi:10.1007/s00701-022-05299-3 [paper]

Incidence of surgically treated post-traumatic hydrocephalus 6 months following head injury in patients undergoing acute head computed tomography.

Journal: Acta neurochirurgica

Status: code on request

[43497] doi:10.1016/j.neuroimage.2022.119423 [paper, repository]

Surface-based tracking for short association fibre tractography.

Journal: NeuroImage

Authors' code: dmitrishastin/SAF (MIT)

Status: code verified, 45 files readable, 9 matches

[43498] doi:10.1016/j.nicl.2022.103106 [paper, repository]

The Open-Access European Prevention of Alzheimer's Dementia (EPAD) MRI dataset and processing workflow.

Journal: NeuroImage. Clinical

Authors' code: exploreasl/exploreasl (no license)

Status: code verified, 2,000 files readable, 12 matches

[43499] doi:10.1038/s41467-022-31549-0 [paper, repository]

Audiovisual adaptation is expressed in spatial and decisional codes.

Journal: Nature communications

Authors' code: jdiedrichsen/pcm_toolbox (MIT), figshare 19469861 (CC-BY-4.0), allermat/audiovisual_adaptation_fMRI_EEG (GPL-2.0), Zenodo 6572895 (other-open)

Status: code verified, 488 files readable, 39 matches

[43500] doi:10.1038/s41467-022-31635-3 [paper, repository]

Sex-specific regulation of inhibition and network activity by local aromatase in the mouse hippocampus.

Journal: Nature communications

Authors' code: tdt.com/docs/sdk (no license)

Status: code verified

[43501] doi:10.1038/s41598-022-15204-8 [paper, repository]

Synthetic MRI for stroke: a qualitative and quantitative pilot study.

Journal: Scientific reports

Authors' code: r-project.org (no license)

Status: code verified

[43502] doi:10.1038/s41598-022-15687-5 [paper, data]

Longitudinal changes in auditory and reward systems following receptive music-based intervention in older adults.

Journal: Scientific reports

Status: data only, 1 dataset cited

[43503] doi:10.1038/s42003-022-03594-4 [paper, data]

KHSRP loss increases neuronal growth and synaptic transmission and alters memory consolidation through RNA stabilization.

Journal: Communications biology

Status: data only, 1 dataset cited

[43504] doi:10.1073/pnas.2107797119 [paper, repository]

Widespread ripples synchronize human cortical activity during sleep, waking, and memory recall.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: Zenodo 6270017 (CC-BY-4.0)

Status: code verified, 102 files readable, 14 matches

[43505] doi:10.1084/jem.20212307 [paper, data]

Delineating a serotonin 1B receptor circuit for appetite suppression in mice.

Journal: The Journal of experimental medicine

Status: data only, 1 dataset cited

[43506] doi:10.1093/braincomms/fcac161 [paper, repository]

Utility of the Addenbrooke's Cognitive Examination III online calculator to differentiate the primary progressive aphasia variants.

Journal: Brain communications

Authors' code: OSF 7rwk6 (no license)

Status: code verified, 2 files readable, 2 matches

[43507] doi:10.1093/oons/kvac009 [paper, repository]

Tissue-Wide Effects Override Cell-Intrinsic Gene Function in Radial Neuron Migration.

Journal: Oxford open neuroscience

Authors' code: hippenmeyerlab/cell2layer (GPL-3.0), hippenmeyerlab/undrift (LGPL-3.0)

Status: code verified, 8 files readable, 1 match

[43508] doi:10.1093/pnasnexus/pgac061 [paper, repository]

Deadly gun violence, neighborhood collective efficacy, and adolescent neurobehavioral outcomes.

Journal: PNAS nexus

Authors' code: OSF rct6q (no license)

Status: code verified, 4 files readable, 2 matches

[43509] doi:10.1136/bmjopen-2022-064173 [paper, repository]

Motor Neuron Disease Systematic Multi-Arm Adaptive Randomised Trial (MND-SMART): a multi-arm, multi-stage, adaptive, platform, phase III randomised, double-blind, placebo-controlled trial of repurposed drugs in motor neuron disease.

Journal: BMJ open

Authors' code: OSF bkscj (no license)

Status: empty repository

[43510] doi:10.1145/3534594 [paper, repository]

TinyOdom: Hardware-Aware Efficient Neural Inertial Navigation.

Journal: Proceedings of the ACM on interactive, mobile, wearable and ubiquitous technologies

Authors' code: nesl/tinyodom (BSD-3-Clause), Sachini/ronin (GPL-3.0), Richard6195/Dead-reckoning-animal-movements-in-R (no license)

Status: code verified, 402 files readable, 8 matches

[43511] doi:10.1186/s13321-022-00619-2 [paper, repository]

Blood-brain barrier penetration prediction enhanced by uncertainty estimation.

Journal: Journal of cheminformatics

Authors' code: tongxiaochu/BBB_uncertainty_project (no license)

Status: code verified, 32 files readable, 15 matches

[43512] doi:10.1186/s40478-022-01387-8 [paper, data]

Distinct cell type-specific protein signatures in GRN and MAPT genetic subtypes of frontotemporal dementia.

Journal: Acta neuropathologica communications

Status: data only, 6 datasets cited

[43513] doi:10.1242/jeb.244087 [paper, repository]

Generating spatiotemporal patterns of linearly polarised light at high frame rates for insect vision research.

Journal: The Journal of experimental biology

Authors' code: jacksupple/PolarisationStimulationDevice (no license), jacksupple/Supple22_JEB_PolDevice_DataAnalysisScripts (no license)

Status: code verified, 22 files readable, 7 matches

[43514] doi:10.1371/journal.pcbi.1010223 [paper, repository]

Trial-by-trial predictions of subjective time from human brain activity.

Journal: PLoS computational biology

Authors' code: OSF 2zqfu (no license)

Status: code verified, 1 file readable

[43515] doi:10.3389/fdgth.2022.842301 [paper, repository]

Voice Analysis for Neurological Disorder Recognition-A Systematic Review and Perspective on Emerging Trends.

Journal: Frontiers in digital health

Authors' code: Pascal-H/voice_analysis_for_neurological_disorder_recognition (no license)

Status: code verified, 4 files readable

[43516] doi:10.3389/fnhum.2022.906099 [paper]

Neural Synchrony During Naturalistic Information Processing Is Associated With Aerobically Active Lifestyle and Cardiorespiratory Fitness in Cognitively Intact Older Adults.

Journal: Frontiers in human neuroscience

Status: code on request

[43517] doi:10.3389/fnhum.2022.946156 [paper, data]

SPAMRI: A MATLAB Toolbox for Surface-Based Processing and Analysis of Magnetic Resonance Imaging.

Journal: Frontiers in human neuroscience

Status: data only, 1 dataset cited

[43518] doi:10.3389/fnins.2022.911065 [paper, repository]

Overall Survival Prediction of Glioma Patients With Multiregional Radiomics.

Journal: Frontiers in neuroscience

Authors' code: FETS-AI/LabelFusion (Apache-2.0)

Status: code verified, 12 files readable

[43519] doi:10.3389/fnmol.2022.913328 [paper, data]

Identification of Candidate Genes Associated With Prognosis in Glioblastoma.

Journal: Frontiers in molecular neuroscience

Status: data only, 1 dataset cited

[43520] doi:10.3390/clockssleep4030028 [paper, data]

Noradrenergic Signaling in Astrocytes Influences Mammalian Sleep Homeostasis.

Journal: Clocks & sleep

Status: data only, 5 datasets cited

[43521] doi:10.3390/diagnostics12071657 [paper, data]

Bayesian Depth-Wise Convolutional Neural Network Design for Brain Tumor MRI Classification.

Journal: Diagnostics (Basel, Switzerland)

Status: data only, 1 dataset cited

[43522] doi:10.3892/ijo.2022.5390 [paper, data]

Differences in actionable genomic alterations between brain metastases and non‑brain metastases in patients with non‑small cell lung cancer.

Journal: International journal of oncology

Status: data only, 1 dataset cited

[43523] doi:10.7150/thno.75123 [paper, data]

Recapitulating influenza virus infection and facilitating antiviral and neuroprotective screening in tractable brain organoids.

Journal: Theranostics

Status: data only, 1 dataset cited

[43524] doi:10.7554/elife.76411 [paper, repository]

Spatially bivariate EEG-neurofeedback can manipulate interhemispheric inhibition.

Journal: eLife

Authors' code: MasaakiHayashi/elife-neurofeedback-experiment (MIT)

Status: code verified, 36 files readable

Wednesday, 6 July 2022 (32 papers)

[43525] doi:10.1016/j.heliyon.2022.e09869 [paper, data]

A GC-MS-based untargeted metabolomics approach for comprehensive metabolic profiling of vancomycin-induced toxicity in mice.

Journal: Heliyon

Status: data only, 1 dataset cited

[43526] doi:10.1016/j.xcrm.2022.100677 [paper]

Corticostriatal circuits in the transition to chronic back pain: The predictive role of reward learning.

Journal: Cell reports. Medicine

Status: code on request

[43527] doi:10.1038/s41467-022-31212-8 [paper, repository]

Nuclear speed and cycle length co-vary with local density during syncytial blastoderm formation in a cricket.

Journal: Nature communications

Authors' code: Zenodo 6564745 (other-open)

Status: code verified, 4 files readable

[43528] doi:10.1038/s41467-022-31403-3 [paper, data]

Comparison of chromatin accessibility landscapes during early development of prefrontal cortex between rhesus macaque and human.

Journal: Nature communications

Status: code on request, 1 dataset cited

[43529] doi:10.1038/s41467-022-31578-9 [paper, repository]

Pattern decorrelation in the mouse medial prefrontal cortex enables social preference and requires MeCP2.

Journal: Nature communications

Authors' code: Lulab-GWU/Social-MS (no license)

Status: code verified, 7 files readable

[43530] doi:10.1038/s41586-022-04913-9 [paper, repository]

Hippocampal place cells have goal-oriented vector fields during navigation.

Journal: Nature

Authors' code: jakeormond/vectorFields (no license)

Status: code verified, 7 files readable

[43531] doi:10.1038/s41586-022-04915-7 [paper, repository]

A transcriptomic axis predicts state modulation of cortical interneurons.

Journal: Nature

Authors' code: ZhuangLab/storm-control (MIT), acycliq/storm-control (MIT), jduffield65/iss (GPL-3.0), ha-ha-ha-han/NeuromicsCellDetection (GPL-3.0), sbugeon/NeuromicsCellDetection (GPL-3.0), cortex-lab/Suite2P (other)

Status: code verified, 1,278 files readable, 20 matches

[43532] doi:10.1038/s41598-022-15572-1 [paper, data]

Expression pattern of Stomatin-domain proteins in the peripheral olfactory system.

Journal: Scientific reports

Status: data only, 1 dataset cited

[43533] doi:10.1073/pnas.2118192119 [paper, repository]

Luxotonic signals in human prefrontal cortex as a possible substrate for effects of light on mood and cognition.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: doi:10.6084/m9.figshare.c.6054941.v1 (no license)

Status: code found, still to be checked

[43534] doi:10.1073/pnas.2122618119 [paper, data]

Green fluorescent cAMP indicator of high speed and specificity suitable for neuronal live-cell imaging.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 2 datasets cited

[43535] doi:10.1073/pnas.2200342119 [paper, data]

Voltage-gated sodium channel &lt;i&gt;scn8a&lt;/i&gt; is required for innervation and regeneration of amputated adult zebrafish fins.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 2 datasets cited

[43536] doi:10.1093/braincomms/fcac173 [paper, repository]

Multiple mechanisms shape the relationship between pathway and duration of focal seizures.

Journal: Brain communications

Authors' code: kimjingu/nonnegfac-matlab (no license), Zenodo 5503590 (CC-BY-4.0)

Status: code verified, 10 files readable

[43537] doi:10.1111/cpr.13305 [paper, data]

Inhibition of L-type voltage-gated calcium channel-mediated Ca²⁺ influx suppresses the collective migration and invasion of ameloblastoma.

Journal: Cell proliferation

Status: data only, 1 dataset cited

[43538] doi:10.1117/1.nph.9.3.032213 [paper, repository]

Beyond correlation: functional OPTO-MAgnetic Integration Concept (OPTOMAIC) to reveal the brain-wide signature of local neuronal signals-of-interest.

Journal: Neurophotonics

Authors' code: Strohlab/OPTOMAIC_Neurophotonics2022 (GPL-3.0)

Status: code verified, 14 files readable

[43539] doi:10.1186/s12889-022-13612-z [paper]

Modeling relationships between iron status, behavior, and brain electrophysiology: evidence from a randomized study involving a biofortified grain in Indian adolescents.

Journal: BMC public health

Status: code on request

[43540] doi:10.1186/s12951-022-01493-8 [paper, data]

Establishment and evaluation of glucose-modified nanocomposite liposomes for the treatment of cerebral malaria.

Journal: Journal of nanobiotechnology

Status: data only, 5 datasets cited

[43541] doi:10.1186/s13020-022-00630-7 [paper, data]

Asafoetida exerts neuroprotective effect on oxidative stress induced apoptosis through PI3K/Akt/GSK3β/Nrf2/HO-1 pathway.

Journal: Chinese medicine

Status: data only, 1 dataset cited

[43542] doi:10.1186/s40478-022-01403-x [paper, data]

Nuclear alpha-synuclein is present in the human brain and is modified in dementia with Lewy bodies.

Journal: Acta neuropathologica communications

Status: data only, 2 datasets cited

[43543] doi:10.1186/s40478-022-01404-w [paper, data]

Terminal complement pathway activation drives synaptic loss in Alzheimer's disease models.

Journal: Acta neuropathologica communications

Status: data only, 9 datasets cited

[43544] doi:10.1212/wnl.0000000000200898 [paper, data]

Association of Pace of Aging Measured by Blood-Based DNA Methylation With Age-Related Cognitive Impairment and Dementia.

Journal: Neurology

Status: data only, 1 dataset cited

[43545] doi:10.1242/dev.199914 [paper, data]

Human iPSC-derived cerebral organoids model features of Leigh syndrome and reveal abnormal corticogenesis.

Journal: Development (Cambridge, England)

Status: data only, 2 datasets cited

[43546] doi:10.15252/embj.2021110501 [paper, data]

Neuron-specific translational control shift ensures proteostatic resilience during ER stress.

Journal: The EMBO journal

Status: data only, 1 dataset cited

[43547] doi:10.3389/fimmu.2022.928343 [paper, data]

Orally Administered Brain Protein Combined With Probiotics Increases Treg Differentiation to Reduce Secondary Inflammatory Damage Following Craniocerebral Trauma.

Journal: Frontiers in immunology

Status: data only, 2 datasets cited

[43548] doi:10.3389/fneur.2022.904027 [paper, data]

Identification of a Novel Nonsense Mutation in <i>PLA2G6</i> and Prenatal Diagnosis in a Chinese Family With Infantile Neuroaxonal Dystrophy.

Journal: Frontiers in neurology

Status: data only, 1 dataset cited

[43549] doi:10.3389/fnins.2022.919186 [paper, repository]

Multi-Coil MRI Reconstruction Challenge-Assessing Brain MRI Reconstruction Models and Their Generalizability to Varying Coil Configurations.

Journal: Frontiers in neuroscience

Authors' code: rmsouza01/MC-MRI-Rec (no license)

Status: code verified, 10 files readable, 1 match

[43550] doi:10.3389/fnmol.2022.901466 [paper]

Meis1 Regulates Nociceptor Development and Behavioral Response to Tactile Stimuli.

Journal: Frontiers in molecular neuroscience

Status: data only

[43551] doi:10.3390/antiox11071328 [paper, data]

Blocking of P2X7r Reduces Mitochondrial Stress Induced by Alcohol and Electronic Cigarette Exposure in Brain Microvascular Endothelial Cells.

Journal: Antioxidants (Basel, Switzerland)

Status: data only, 1 dataset cited

[43552] doi:10.3390/diagnostics12071644 [paper, repository]

Reduced Cerebellar Volume in Term Infants with Complex Congenital Heart Disease: Correlation with Postnatal Growth Measurements.

Journal: Diagnostics (Basel, Switzerland)

Authors' code: PIRCImagingTools/NeBSS (BSD-3-Clause)

Status: code verified, 22 files readable, 2 matches

[43553] doi:10.3390/pharmaceutics14071414 [paper, data]

Targeting the Blood-Brain Tumor Barrier with Tumor Necrosis Factor-α.

Journal: Pharmaceutics

Status: data only, 1 dataset cited

[43554] doi:10.3390/pharmaceutics14071420 [paper, data]

Efficacy of Vafidemstat in Experimental Autoimmune Encephalomyelitis Highlights the KDM1A/RCOR1/HDAC Epigenetic Axis in Multiple Sclerosis.

Journal: Pharmaceutics

Status: data only, 2 datasets cited

[43555] doi:10.7554/elife.67464 [paper, data]

β2-subunit alternative splicing stabilizes Cav2.3 Ca²⁺ channel activity during continuous midbrain dopamine neuron-like activity.

Journal: eLife

Status: data only, 1 dataset cited

[43556] doi:10.7554/elife.69013 [paper, repository]

Combining hypothesis- and data-driven neuroscience modeling in FAIR workflows.

Journal: eLife

Authors' code: osb: (no license), AllenInstitute/sonata (BSD-3-Clause), BhallaLab/HillTau (GPL-3.0), BlueBrain/BluePyOpt (GPL-3.0), KaliLab/hippounit (BSD-3-Clause), upibhalla/HOSS (GPL)

Status: code verified, 412 files readable, 3 matches

Tuesday, 5 July 2022 (20 papers)

[43557] doi:10.1002/hbm.25983 [paper, data]

Sex differences in predictors and regional patterns of brain age gap estimates.

Journal: Human brain mapping

Status: data only, 2 datasets cited

[43558] doi:10.1007/s00415-022-11224-6 [paper, data]

The clinical relevance of serum versus CSF NMDAR autoantibodies associated exclusively with psychiatric features: a systematic review and meta-analysis of individual patient data.

Journal: Journal of neurology

Status: data only, 2 datasets cited

[43559] doi:10.1021/acs.jmedchem.1c01946 [paper, data]

Glioblastoma: Current Status, Emerging Targets, and Recent Advances.

Journal: Journal of medicinal chemistry

Status: data only, 11 datasets cited

[43560] doi:10.1038/s41467-022-31580-1 [paper, repository]

Single-cell RNA-sequencing analysis of the developing mouse inner ear identifies molecular logic of auditory neuron diversification.

Journal: Nature communications

Authors' code: LouisFaure/sgnfates_paper (no license)

Status: code verified, 5 files readable, 8 matches

[43561] doi:10.1038/s41514-022-00090-1 [paper, data]

Age-dependent cognitive impairment, hydrocephalus and leukocyte infiltration in transgenic mice with endothelial expression of human EPHX2.

Journal: npj aging

Status: data only, 1 dataset cited

[43562] doi:10.1038/s41598-022-15124-7 [paper, repository]

Gray matter volumetric correlates of attention deficit and hyperactivity traits in emerging adolescents.

Journal: Scientific reports

Authors' code: jaimeide/lilabyale (MIT)

Status: code verified, 15 files readable, 2 matches

[43563] doi:10.1038/s41598-022-15423-z [paper, repository]

Fast intraoperative histology-based diagnosis of gliomas with third harmonic generation microscopy and deep learning.

Journal: Scientific reports

Authors' code: dataverse.nl/dataset.xhtml (no license)

Status: code verified

[43564] doi:10.1038/s42003-022-03615-2 [paper]

A computational model based on corticospinal functional MRI revealed asymmetrically organized motor corticospinal networks in humans.

Journal: Communications biology

Status: code on request

[43565] doi:10.1073/pnas.2111003119 [paper, data]

STING activation promotes robust immune response and NK cell-mediated tumor regression in glioblastoma models.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 1 dataset cited

[43566] doi:10.1186/s13063-022-06413-7 [paper, data]

The effects of polyunsaturated fatty acid (PUFA) administration on the microbiome-gut-brain axis in adolescents with anorexia nervosa (the MiGBAN study): study protocol for a longitudinal, double-blind, randomized, placebo-controlled trial.

Journal: Trials

Status: data only, 1 dataset cited

[43567] doi:10.1186/s13229-022-00504-7 [paper, repository]

The longitudinal bidirectional relationship between autistic traits and brain morphology from childhood to adolescence: a population-based cohort study.

Journal: Molecular autism

Authors' code: tjhwhite/Gen_R_ASD_CLPM (CC0-1.0)

Status: code verified, 5 files readable, 1 match

[43568] doi:10.1371/journal.pcbi.1010211 [paper, repository]

nAdder: A scale-space approach for the 3D analysis of neuronal traces.

Journal: PLoS computational biology

Authors' code: genepy3d.gitlab.io (no license), msphan/multiscale-intrinsic-dim (no license)

Status: code verified, 34 files readable, 6 matches

[43569] doi:10.1371/journal.pcbi.1010256 [paper, repository]

Stimulus presentation can enhance spiking irregularity across subcortical and cortical regions.

Journal: PLoS computational biology

Authors' code: doi:10.5061/dryad.0cfxpnw2c (no license), Zenodo 4836489 (MIT)

Status: code verified, 20 files readable

[43570] doi:10.1371/journal.pone.0269533 [paper, data]

Identification of COL1A1 associated with immune infiltration in brain lower grade glioma.

Journal: PloS one

Status: data only, 5 datasets cited

[43571] doi:10.1371/journal.pone.0270973 [paper, repository]

The leap to ordinal: Detailed functional prognosis after traumatic brain injury with a flexible modelling approach.

Journal: PloS one

Authors' code: sbhattacharyay/ordinal_GOSE_prediction (MIT), Zenodo 5933042 (other-open)

Status: code verified, 110 files readable, 17 matches

[43572] doi:10.3389/fgene.2022.890174 [paper, data]

Identification of BST2 Contributing to the Development of Glioblastoma Based on Bioinformatics Analysis.

Journal: Frontiers in genetics

Status: data only, 3 datasets cited

[43573] doi:10.3389/fncel.2022.917713 [paper, repository]

Real-Time Image Processing Toolbox for All-Optical Closed-Loop Control of Neuronal Activities.

Journal: Frontiers in cellular neuroscience

Authors' code: YangYangLab/ORCA (GPL-3.0)

Status: code verified, 97 files readable, 7 matches

[43574] doi:10.3389/fnhum.2022.931085 [paper, repository]

Multi-Armed Bandits in Brain-Computer Interfaces.

Journal: Frontiers in human neuroscience

Authors' code: gitlab.control.lth.se/fridah/mab_for_bci-public (MIT)

Status: code verified, 3 files readable, 1 match

[43575] doi:10.3389/fnins.2022.881598 [paper, repository]

Beyond LIF Neurons on Neuromorphic Hardware.

Journal: Frontiers in neuroscience

Authors' code: mollie-ward/beyondLIFNeurons (no license)

Status: code verified, 20 files readable, 5 matches

[43576] doi:10.7554/elife.69430 [paper, repository]

Developmental changes in story-evoked responses in the neocortex and hippocampus.

Journal: eLife

Authors' code: samsydco/HBN (MIT)

Status: code verified, 30 files readable, 6 matches

Monday, 4 July 2022 (22 papers)

[43577] doi:10.1002/mrm.29359 [paper, repository]

Ultrahigh Resolution fMRI at 7T Using Radial-Cartesian TURBINE Sampling.

Journal: Magnetic resonance in medicine

Authors' code: mchiew/highres_turbine_7T (no license)

Status: code verified, 7 files readable, 1 match

[43578] doi:10.1007/s00429-022-02526-6 [paper, data]

Mapping lesion, structural disconnection, and functional disconnection to symptoms in semantic aphasia.

Journal: Brain structure & function

Status: data only, 2 datasets cited

[43579] doi:10.1016/j.dcn.2022.101132 [paper, repository]

Parental socioeconomic status is linked to cortical microstructure and language abilities in children and adolescents.

Journal: Developmental cognitive neuroscience

Authors' code: OSF szqru (no license)

Status: code verified

[43580] doi:10.1016/j.dib.2022.108441 [paper, data]

Spectra analysis and live-neuron imaging of cyclic AMP binding domain fusing circularly permutated GFP: Data for violet light excitable cyclic AMP indicator.

Journal: Data in brief

Status: data only, 2 datasets cited

[43581] doi:10.1038/s41467-022-31437-7 [paper, data]

Structures and gating mechanisms of human bestrophin anion channels.

Journal: Nature communications

Status: data only, 1 dataset cited

[43582] doi:10.1038/s41467-022-31594-9 [paper, data]

Myotonic dystrophy RNA toxicity alters morphology, adhesion and migration of mouse and human astrocytes.

Journal: Nature communications

Status: data only, 1 dataset cited

[43583] doi:10.1038/s41467-022-31599-4 [paper]

Flexible ultrasound-induced retinal stimulating piezo-arrays for biomimetic visual prostheses.

Journal: Nature communications

Status: code on request

[43584] doi:10.1038/s41598-022-15003-1 [paper, data]

Comprehensive multi-cohort transcriptional meta-analysis of muscle diseases identifies a signature of disease severity.

Journal: Scientific reports

Status: data only, 1 dataset cited

[43585] doi:10.1038/s41598-022-15083-z [paper, repository]

In-vivo data-driven parcellation of Heschl's gyrus using structural connectivity.

Journal: Scientific reports

Authors' code: hebinalee/human_PAC_parcellation (no license)

Status: code verified, 8 files readable, 4 matches

[43586] doi:10.1155/2022/9774879 [paper]

Circadian Clock Genes Act as Diagnostic and Prognostic Biomarkers of Glioma: Clinic Implications for Chronotherapy.

Journal: BioMed research international

Status: data only

[43587] doi:10.1186/s12874-022-01664-z [paper, data]

Machine learning approach for the prediction of 30-day mortality in patients with sepsis-associated encephalopathy.

Journal: BMC medical research methodology

Status: data only, 1 dataset cited

[43588] doi:10.1186/s12885-022-09791-y [paper, data]

A bioinformatic analysis study of m⁷G regulator-mediated methylation modification patterns and tumor microenvironment infiltration in glioblastoma.

Journal: BMC cancer

Status: data only, 7 datasets cited

[43589] doi:10.1186/s12974-022-02532-9 [paper, data]

Repopulated microglia induce expression of Cxcl13 with differential changes in Tau phosphorylation but do not impact amyloid pathology.

Journal: Journal of neuroinflammation

Status: data only, 1 dataset cited

[43590] doi:10.1186/s40478-022-01398-5 [paper, data]

Increased CSF-decorin predicts brain pathological changes driven by Alzheimer's Aβ amyloidosis.

Journal: Acta neuropathologica communications

Status: data only, 3 datasets cited

[43591] doi:10.1242/dev.200448 [paper, data]

Notch signaling determines cell-fate specification of the two main types of vomeronasal neurons of rodents.

Journal: Development (Cambridge, England)

Status: data only, 1 dataset cited

[43592] doi:10.3389/fneur.2022.821570 [paper, data]

The Burden of Progressive Supranuclear Palsy on Patients, Caregivers, and Healthcare Systems by PSP Phenotype: A Cross-Sectional Study.

Journal: Frontiers in neurology

Status: data only, 4 datasets cited

[43593] doi:10.3389/fninf.2022.883333 [paper, repository]

Fast Simulation of a Multi-Area Spiking Network Model of Macaque Cortex on an MPI-GPU Cluster.

Journal: Frontiers in neuroinformatics

Authors' code: gmtiddia/ngpu_multi_area_model_simulation (CC-BY-NC-SA-4.0)

Status: code verified, 36 files readable, 4 matches

[43594] doi:10.3389/fnins.2022.915164 [paper, repository]

Structure-Function Decoupling: A Novel Perspective for Understanding the Radiation-Induced Brain Injury in Patients With Nasopharyngeal Carcinoma.

Journal: Frontiers in neuroscience

Authors' code: lichao312214129/easylearn (MIT)

Status: code verified, 231 files readable, 3 matches

[43595] doi:10.3389/fnmol.2022.923089 [paper, data]

The Underlying Pathogenesis of Neurovascular Compression Syndromes: A Systematic Review.

Journal: Frontiers in molecular neuroscience

Status: data only, 3 datasets cited

[43596] doi:10.3389/fonc.2022.893132 [paper, data]

Tumor-Associated Macrophages Correlate With Prognosis in Medulloblastoma.

Journal: Frontiers in oncology

Status: data only, 10 datasets cited

[43597] doi:10.3390/cancers14133269 [paper]

Neurobehavioral Impairment in Pediatric Brain Tumor Survivors: A Meta-Analysis.

Journal: Cancers

Status: code on request

[43598] doi:10.7554/elife.78773 [paper, repository]

Visualizing synaptic dopamine efflux with a 2D composite nanofilm.

Journal: eLife

Authors' code: davidackerman/nnmf (BSD-3-Clause), figshare 19416875 (CC-BY-4.0)

Status: code verified, 70 files readable, 4 matches

Sunday, 3 July 2022 (3 papers)

[43599] doi:10.1016/j.dcn.2022.101131 [paper, repository]

Adolescent to young adult longitudinal development across 8 years for matching emotional stimuli during functional magnetic resonance imaging.

Journal: Developmental cognitive neuroscience

Authors' code: nkroemer/reliability (GPL-3.0)

Status: code verified, 63 files readable, 1 match

[43600] doi:10.1016/j.isci.2022.104706 [paper, repository]

What do neuroanatomical networks reveal about the ontology of human cognitive abilities?

Journal: iScience

Authors' code: kristantodan12/Mining-the-brain (no license)

Status: code verified, 5 files readable, 2 matches

[43601] doi:10.1186/s12911-022-01907-5 [paper, repository]

Autonomous modeling of repetitive movement for rehabilitation exercise monitoring.

Journal: BMC medical informatics and decision making

Authors' code: Zenodo 6075092 (other-open), koonyook/repetitive-mocap (MIT)

Status: code verified, 4 files readable

Saturday, 2 July 2022 (8 papers)

[43602] doi:10.1007/s00406-022-01446-0 [paper, data]

Impact of converging sociocultural and substance-related trends on US autism rates: combined geospatiotemporal and causal inferential analysis.

Journal: European archives of psychiatry and clinical neuroscience

Status: data only, 1 dataset cited

[43603] doi:10.1016/j.brs.2022.06.013 [paper, repository]

Pulse width modulation-based TMS: Primary motor cortex responses compared to conventional monophasic stimuli.

Journal: Brain stimulation

Authors' code: OSF 5ry92 (no license)

Status: code verified

[43604] doi:10.1016/j.isci.2022.104697 [paper, repository]

Regulation of <i>Drosophila</i> oviduct muscle contractility by octopamine.

Journal: iScience

Authors' code: ucla.box.com/s/u8372zvb7awvikaovgjqo6tdefat21ub (no license)

Status: dead link

[43605] doi:10.1016/j.neuroimage.2022.119434 [paper, repository]

Psilocybin induces spatially constrained alterations in thalamic functional organizaton and connectivity.

Journal: NeuroImage

Authors' code: KKI-CNIR/CNIR-fmri_preproc_toolbox (no license), mandymejia/templateICA (no license), mandymejia/templateICAr (no license), KKI-CNIR/CNIR-fmri_preproc_toolbox- (no license), mandymejia (no license)

Status: code verified, 644 files readable, 14 matches

[43606] doi:10.1038/s41467-022-31253-z [paper, repository]

Humidity response in Drosophila olfactory sensory neurons requires the mechanosensitive channel TMEM63.

Journal: Nature communications

Authors' code: kristinbranson/FlyTracker (BSD-3-Clause)

Status: code verified, 205 files readable

[43607] doi:10.1038/s41467-022-31565-0 [paper, data]

Olfactory modulation of barrel cortex activity during active whisking and passive whisker stimulation.

Journal: Nature communications

Status: data only, 1 dataset cited

[43608] doi:10.1038/s41598-022-15252-0 [paper, repository]

Automated methodology for optimal selection of minimum electrode subsets for accurate EEG source estimation based on Genetic Algorithm optimization.

Journal: Scientific reports

Authors' code: anfesogu/Ground-Truth-EEG-Dataset (no license), se.mathworks.com/matlabcentral/fileexchange (no license)

Status: code verified, 2 files readable, 2 matches

[43609] doi:10.1038/s42003-022-03605-4 [paper, data]

Low-dose sodium-glucose cotransporter 2 inhibitor ameliorates ischemic brain injury in mice through pericyte protection without glucose-lowering effects.

Journal: Communications biology

Status: data only, 1 dataset cited

Friday, 1 July 2022 (86 papers, 71 on this page)

[43610] doi:10.1001/jamanetworkopen.2022.22999 [paper, data]

Association of Obstructive Sleep Apnea With White Matter Integrity and Cognitive Performance Over a 4-Year Period in Middle to Late Adulthood.

Journal: JAMA network open

Status: data only, 1 dataset cited

[43611] doi:10.1002/hbm.25998 [paper, repository]

Cerebral cortex layer segmentation using diffusion magnetic resonance imaging in vivo with applications to laminar connections and working memory analysis.

Journal: Human brain mapping

Authors' code: JieZhang11/LayerdMRI (no license)

Status: code verified, 14 files readable, 1 match

[43612] doi:10.1007/s00401-022-02450-3 [paper, repository]

Aberrant NOVA1 function disrupts alternative splicing in early stages of amyotrophic lateral sclerosis.

Journal: Acta neuropathologica

Authors' code: YeoLab/eclip (other), byee4/annotator (no license), byee4/clip_analysis (no license)

Status: code verified, 103 files readable

[43613] doi:10.1016/j.celrep.2022.111037 [paper]

Serotonergic regulation of bipolar cell survival in the developing cerebral cortex.

Journal: Cell reports

Status: code on request

[43614] doi:10.1016/j.celrep.2022.111040 [paper, repository]

Unified classification of mouse retinal ganglion cells using function, morphology, and gene expression.

Journal: Cell reports

Authors' code: rgctypes.org (no license)

Status: code found, still to be checked

[43615] doi:10.1016/j.celrep.2022.111042 [paper]

Hippocampal-evoked inhibition of cholinergic interneurons in the nucleus accumbens.

Journal: Cell reports

Status: code on request

[43616] doi:10.1016/j.celrep.2022.111058 [paper]

Treadmill exercise reduces α-synuclein spreading via PPARα.

Journal: Cell reports

Status: code on request

[43617] doi:10.1016/j.celrep.2022.111085 [paper, data]

Synaptic hyperexcitability of cytomegalic pyramidal neurons contributes to epileptogenesis in tuberous sclerosis complex.

Journal: Cell reports

Status: code on request, 1 dataset cited

[43618] doi:10.1016/j.celrep.2022.111119 [paper, data]

In vitro atlas of dorsal spinal interneurons reveals Wnt signaling as a critical regulator of progenitor expansion.

Journal: Cell reports

Status: code on request, 2 datasets cited

[43619] doi:10.1016/j.celrep.2022.111124 [paper, data]

Pathological mitophagy disrupts mitochondrial homeostasis in Leber's hereditary optic neuropathy.

Journal: Cell reports

Status: data only, 3 datasets cited

[43620] doi:10.1016/j.celrep.2022.111137 [paper]

Inhibition of CSPG receptor PTPσ promotes migration of newly born neuroblasts, axonal sprouting, and recovery from stroke.

Journal: Cell reports

Status: code on request

[43621] doi:10.1016/j.celrep.2022.111139 [paper]

Dynamic control of visually guided locomotion through corticosubthalamic projections.

Journal: Cell reports

Status: code on request

[43622] doi:10.1016/j.neuroimage.2022.119433 [paper, repository]

Metastability, fractal scaling, and synergistic information processing: What phase relationships reveal about intrinsic brain activity.

Journal: NeuroImage

Authors' code: franhancock/Complexity-science-in-dFC (MIT), scottclowe/superbar (BSD-2-Clause), jvohryzek/GhostAttractors (no license)

Status: code verified, 80 files readable, 17 matches

[43623] doi:10.1016/j.xcrm.2022.100686 [paper]

A RET::GRB2 fusion in pheochromocytoma defies the classic paradigm of RET oncogenic fusions.

Journal: Cell reports. Medicine

Status: code on request

[43624] doi:10.1038/s41467-022-30805-7 [paper, repository]

Association of mitochondrial DNA content, heteroplasmies and inter-generational transmission with autism.

Journal: Nature communications

Authors' code: mtstamp/stamp (MIT)

Status: code verified, 16 files readable, 10 matches

[43625] doi:10.1038/s41467-022-31284-6 [paper, repository]

Development of visual response selectivity in cortical GABAergic interneurons.

Journal: Nature communications

Authors' code: jtchang/ChangAndFitzpatrick2022 (MIT)

Status: code verified, 56 files readable, 10 matches

[43626] doi:10.1038/s41598-022-14441-1 [paper, repository]

Assessment of hair and cashmere properties and their genetic background of several goat breeds in Southwest China.

Journal: Scientific reports

Authors' code: figshare 11859945 (CC-BY-4.0)

Status: empty repository

[43627] doi:10.1038/s42003-022-03614-3 [paper, data]

Functional cargos of exosomes derived from Flk-1&lt;sup&gt;+&lt;/sup&gt; vascular progenitors enable neurulation and ameliorate embryonic anomalies in diabetic pregnancy.

Journal: Communications biology

Status: data only, 1 dataset cited

[43628] doi:10.1038/s42005-022-00950-y [paper, repository]

Metastable oscillatory modes emerge from synchronization in the brain spacetime connectome.

Journal: Communications physics

Authors' code: fcast7/Hopf_Delay_Toolbox (no license)

Status: code verified, 12 files readable, 11 matches

[43629] doi:10.1038/s44172-022-00014-7 [paper, repository]

Neuronal activity under transcranial radio-frequency stimulation in metal-free rodent brains in-vivo.

Journal: Communications engineering

Authors' code: petersenpeter/phy-plugins (GPL-3.0), MouseLand/Kilosort (GPL-3.0), omidyaghmazadeh (no license)

Status: code verified, 63 files readable

[43630] doi:10.1055/s-0042-1754345 [paper, data]

Role of the optic nerve sheath diameter in the assessment of the effectiveness of decompressive surgery after malignant middle cerebral artery infarction.

Journal: Arquivos de neuro-psiquiatria

Status: data only, 1 dataset cited

[43631] doi:10.1055/s-0042-1755277 [paper, data]

Brain volume loss and physical and cognitive impairment in naive multiple sclerosis patients treated with fingolimod: prospective cohort study in Buenos Aires, Argentina.

Journal: Arquivos de neuro-psiquiatria

Status: data only, 1 dataset cited

[43632] doi:10.1055/s-0042-1755278 [paper, data]

Thomas Willis' legacy on the 400th anniversary of his birth.

Journal: Arquivos de neuro-psiquiatria

Status: data only, 1 dataset cited

[43633] doi:10.1073/pnas.2116673119 [paper, repository]

Adolescent development of multiscale structural wiring and functional interactions in the human connectome.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: mica-mni/micaopen (GPL-3.0), MICA-MNI/BrainSpace (BSD-3-Clause), Zenodo 3688800 (BSD-3-Clause)

Status: code verified, 552 files readable, 8 matches

[43634] doi:10.1073/pnas.2117076119 [paper, repository]

Real-time visualization of mRNA synthesis during memory formation in live mice.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: Neurobiophysics (no license)

Status: code verified

[43635] doi:10.1093/biostatistics/kxab001 [paper, repository]

Dimension constraints improve hypothesis testing for large-scale, graph-associated, brain-image data.

Journal: Biostatistics (Oxford, England)

Authors' code: tienv/GraphMM (no license)

Status: code verified, 24 files readable

[43636] doi:10.1093/brain/awac022 [paper, repository]

Establishing gene regulatory networks from Parkinson's disease risk loci.

Journal: Brain : a journal of neurology

Authors' code: Genome3d/codes3d-v2 (MIT)

Status: code verified, 44 files readable, 3 matches

[43637] doi:10.1093/brain/awac034 [paper, repository]

ZBTB11 dysfunction: spectrum of brain abnormalities, biochemical signature and cellular consequences.

Journal: Brain : a journal of neurology

Authors' code: hbctraining/intro-tochipseq (no license)

Status: dead link

[43638] doi:10.1093/brain/awac037 [paper, repository]

AMPK-mediated potentiation of GABAergic signalling drives hypoglycaemia-provoked spike-wave seizures.

Journal: Brain : a journal of neurology

Authors' code: blabuva (no license)

Status: code verified

[43639] doi:10.1093/brain/awac121 [paper, repository]

Cortical phase-amplitude coupling is key to the occurrence and treatment of freezing of gait.

Journal: Brain : a journal of neurology

Authors' code: zixiao-yin/ecogFog (no license)

Status: code verified, 2 files readable, 1 match

[43640] doi:10.1093/cercor/bhab391 [paper, repository]

Striatal BOLD and Midfrontal Theta Power Express Motivation for Action.

Journal: Cerebral cortex (New York, N.Y. : 1991)

Authors' code: tuhauser/TAfT (no license), johalgermissen/Algermissen2021CerCor (MIT), denoudenlab/Algermissen2021CerCor (MIT)

Status: code verified, 308 files readable, 39 matches

[43641] doi:10.1093/cercor/bhab397 [paper, repository]

The Brain Activation-Based Sexual Image Classifier (BASIC): A Sensitive and Specific fMRI Activity Pattern for Sexual Image Processing.

Journal: Cerebral cortex (New York, N.Y. : 1991)

Authors' code: canlab.github.io (no license)

Status: code verified

[43642] doi:10.1093/cercor/bhab403 [paper, repository]

The ABCD Study: Brain Heterogeneity in Intelligence During a Neurodevelopmental Transition Stage.

Journal: Cerebral cortex (New York, N.Y. : 1991)

Authors' code: q1zhao/dglmThicknessIQ (no license)

Status: code verified, 87 files readable

[43643] doi:10.1093/cercor/bhab414 [paper]

Higher order visual areas enhance stimulus responsiveness in mouse primary visual cortex.

Journal: Cerebral cortex (New York, N.Y. : 1991)

Status: code on request

[43644] doi:10.1093/cercor/bhab415 [paper, repository]

Functional connectivity for the language network in the developing brain: 30 weeks of gestation to 30 months of age.

Journal: Cerebral cortex (New York, N.Y. : 1991)

Authors' code: bioimagesuiteweb.github.io/webapp (no license)

Status: code verified

[43645] doi:10.1093/cercor/bhab417 [paper, repository]

Magnetoencephalographic correlates of mood and reward dynamics in human adolescents.

Journal: Cerebral cortex (New York, N.Y. : 1991)

Authors' code: nimh-comppsych/matlab_meg-mmi (other), OSF vw7sz (no license)

Status: code verified, 54 files readable, 22 matches

[43646] doi:10.1093/genetics/iyac094 [paper, data]

FMRP-dependent production of large dosage-sensitive proteins is highly conserved.

Journal: Genetics

Status: data only, 1 dataset cited

[43647] doi:10.1093/hmg/ddac026 [paper, data]

NSD1 mutations deregulate transcription and DNA methylation of bivalent developmental genes in Sotos syndrome.

Journal: Human molecular genetics

Status: data only, 6 datasets cited

[43648] doi:10.1093/nar/gkac485 [paper, data]

TWIST1 methylation by SETD6 selectively antagonizes LINC-PINT expression in glioma.

Journal: Nucleic acids research

Status: data only, 1 dataset cited

[43649] doi:10.1093/neuonc/noab300 [paper, data]

Dual IGF1R/IR inhibitors in combination with GD2-CAR T-cells display a potent anti-tumor activity in diffuse midline glioma H3K27M-mutant.

Journal: Neuro-oncology

Status: data only, 5 datasets cited

[43650] doi:10.1093/oncolo/oyac064 [paper, data]

Immune Checkpoint Inhibitors in the Treatment of Breast Cancer Brain Metastases.

Journal: The oncologist

Status: data only, 7 datasets cited

[43651] doi:10.1093/scan/nsab113 [paper, data]

Increasing self-other similarity modulates ethnic bias in sensorimotor resonance to others' pain.

Journal: Social cognitive and affective neuroscience

Status: data only, 1 dataset cited

[43652] doi:10.1093/scan/nsab132 [paper, data]

Neural representation of the parent-child attachment from infancy to adulthood.

Journal: Social cognitive and affective neuroscience

Status: data only, 1 dataset cited

[43653] doi:10.1117/1.jbo.27.8.083004 [paper]

Age-related changes in diffuse optical tomography sensitivity profiles from childhood to adulthood.

Journal: Journal of biomedical optics

Status: code on request

[43654] doi:10.1117/1.nph.9.3.031920 [paper, repository]

Versatile software and hardware combo enabling photon counting acquisition and real-time display for multiplexing, 2D and continuous 3D two-photon imaging applications.

Journal: Neurophotonics

Authors' code: PBLab/rpysight (GPL-3.0)

Status: code verified, 19 files readable, 2 matches

[43655] doi:10.1117/1.nph.9.3.031921 [paper, data]

Cranial window for longitudinal and multimodal imaging of the whole mouse cortex.

Journal: Neurophotonics

Status: code on request, 1 dataset cited

[43656] doi:10.1117/1.nph.9.3.035003 [paper, repository]

Correction of global physiology in resting-state functional near-infrared spectroscopy.

Journal: Neurophotonics

Authors' code: pradlanka/rsfc-fnirs (MIT), huppertt/nirs-toolbox (no license)

Status: code verified, 2,014 files readable, 26 matches

[43657] doi:10.1117/1.nph.9.3.035004 [paper]

Comparison of optical measurements of critical closing pressure acquired before and during induced ventricular arrhythmia in adults.

Journal: Neurophotonics

Status: code on request

[43658] doi:10.1162/netn_a_00231 [paper, repository]

Normalizing the brain connectome for communication through synchronization.

Journal: Network neuroscience (Cambridge, Mass.)

Authors' code: esaps/NormConn (GPL-3.0)

Status: empty repository, 2 files readable

[43659] doi:10.1162/netn_a_00241 [paper, repository]

Altered large-scale brain network interactions associated with HIV infection and error processing.

Journal: Network neuroscience (Cambridge, Mass.)

Authors' code: Flanneryg3/HIVCB_ProjectCode (Apache-2.0)

Status: code verified, 84 files readable, 11 matches

[43660] doi:10.1162/netn_a_00243 [paper, repository]

Hyperbolic disc embedding of functional human brain connectomes using resting-state fMRI.

Journal: Network neuroscience (Cambridge, Mass.)

Authors' code: HazyResearch/hyperbolics (no license), networkgeometry/mercator (GPL-3.0)

Status: code verified, 377 files readable, 1 match

[43661] doi:10.1162/netn_a_00246 [paper, data]

Percolation may explain efficiency, robustness, and economy of the brain.

Journal: Network neuroscience (Cambridge, Mass.)

Status: data only, 1 dataset cited

[43662] doi:10.1162/netn_a_00248 [paper, repository]

Implanting intracranial electrodes does not affect spikes or network connectivity in nearby or connected brain regions.

Journal: Network neuroscience (Cambridge, Mass.)

Authors' code: erinconrad/interictal_hubs (no license)

Status: code verified, 207 files readable, 13 matches

[43663] doi:10.1162/netn_a_00252 [paper, repository]

Forecasting brain activity based on models of spatiotemporal brain dynamics: A comparison of graph neural network architectures.

Journal: Network neuroscience (Cambridge, Mass.)

Authors' code: simonvino/DCRNN_brain_connectivity (MIT)

Status: code verified, 13 files readable, 5 matches

[43664] doi:10.1162/netn_a_00253 [paper, repository]

Morphometric features of drug-resistant essential tremor and recovery after stereotactic radiosurgical thalamotomy.

Journal: Network neuroscience (Cambridge, Mass.)

Authors' code: TiBiUan/SCA_EdgeWise (no license)

Status: code verified, 16 files readable, 4 matches

[43665] doi:10.1162/netn_a_00254 [paper, repository]

Empirical evaluation of human fetal fMRI preprocessing steps.

Journal: Network neuroscience (Cambridge, Mass.)

Authors' code: ndar.nih.gov (no license)

Status: code found, still to be checked

[43666] doi:10.1162/netn_a_00255 [paper]

Intermittent brain network reconfigurations and the resistance to social media influence.

Journal: Network neuroscience (Cambridge, Mass.)

Status: code on request

[43667] doi:10.1162/netn_a_00258 [paper, repository]

Applying multilayer analysis to morphological, structural, and functional brain networks to identify relevant dysfunction patterns.

Journal: Network neuroscience (Cambridge, Mass.)

Authors' code: ADaS-Lab/Multilayer-MRI (GPL-3.0)

Status: code verified, 16 files readable, 1 match

[43668] doi:10.1167/jov.22.8.4 [paper, repository]

Feature similarity is non-linearly related to attentional selection: Evidence from visual search and sustained attention tasks.

Journal: Journal of vision

Authors' code: OSF swdqk (no license)

Status: code verified, 1 file readable, 1 match

[43669] doi:10.1172/jci156768 [paper, repository]

Human midbrain dopaminergic neuronal differentiation markers predict cell therapy outcomes in a Parkinson's disease model.

Journal: The Journal of clinical investigation

Authors' code: MichaelPeibo/mDA-time-course-scRNA-seq (no license)

Status: code verified, 6 files readable, 4 matches

[43670] doi:10.1172/jci158448 [paper, data]

Connecting aging biology and inflammation in the omics era.

Journal: The Journal of clinical investigation

Status: data only, 1 dataset cited

[43671] doi:10.1186/s12987-022-00351-x [paper, data]

Proteomics-based investigation of cerebrovascular molecular mechanisms in cerebral amyloid angiopathy by the FFPE-LMD-PCT-SWATH method.

Journal: Fluids and barriers of the CNS

Status: data only, 1 dataset cited

[43672] doi:10.1186/s40035-022-00309-x [paper, data]

Loss of tau expression attenuates neurodegeneration associated with α-synucleinopathy.

Journal: Translational neurodegeneration

Status: data only, 2 datasets cited

[43673] doi:10.1186/s41232-022-00201-1 [paper, data]

Single transcription factor efficiently leads human induced pluripotent stem cells to functional microglia.

Journal: Inflammation and regeneration

Status: data only, 5 datasets cited

[43674] doi:10.1371/journal.pone.0270895 [paper, repository]

The risk of bias in denoising methods: Examples from neuroimaging.

Journal: PloS one

Authors' code: OSF weg87 (no license), OSF qxp8y (no license), OSF a6k9m (no license), OSF 6jhmr (no license), OSF hswaq (no license), OSF 6x8kq (no license)

Status: code verified, 6 files readable, 6 matches

[43675] doi:10.14814/phy2.15368 [paper, repository]

Cholestasis alters brain lipid and bile acid composition and compromises motor function in neonatal piglets.

Journal: Physiological reports

Authors' code: Comparative-Pediatrics-and-Nutrition (no license)

Status: code verified

[43676] doi:10.1523/eneuro.0062-22.2022 [paper, repository]

Traces of Semantization, from Episodic to Semantic Memory in a Spiking Cortical Network Model.

Journal: eNeuro

Authors' code: Zenodo 5101626 (CC-BY-4.0), Nikolaos-Chrysanthidis/BCPNN-NEST2.2.2-MPICH-SINGULARITY (no license), modeldb:257610 (no license)

Status: code verified, 93 files readable, 7 matches

[43677] doi:10.1523/eneuro.0073-22.2022 [paper, repository]

Network States Classification based on Local Field Potential Recordings in the Awake Mouse Neocortex.

Journal: eNeuro

Authors' code: yzerlaut/Network_State_Index (no license), Zenodo 6597313 (other-open)

Status: code verified, 12 files readable, 2 matches

[43678] doi:10.1523/eneuro.0088-22.2022 [paper, repository]

Dynamics of Temporal Integration in the Lateral Geniculate Nucleus.

Journal: eNeuro

Authors' code: scottiealexander/relayglm_paper (CC-BY-NC-SA-4.0)

Status: code verified, 35 files readable, 5 matches

[43679] doi:10.1523/eneuro.0129-22.2022 [paper, repository]

Variation in TAF1 Expression in Female Carrier-Induced Pluripotent Stem Cells and Human Brain Ontogeny Has Implications for Adult Neostriatum Vulnerability in X-Linked Dystonia Parkinsonism.

Journal: eNeuro

Authors' code: apuapaquola (no license)

Status: code verified

[43680] doi:10.1523/eneuro.0166-22.2022 [paper, repository]

Neuromodulation Reduces Interindividual Variability of Neuronal Output.

Journal: eNeuro

Authors' code: fnadim/Schneider_et_al_variabilty_single_neuron (no license)

Status: code verified, 1 file readable

Also: by category, author, journal, institution, tool or dataset; the search; the DOI lookup for any paper read, with or without a page.