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Investigating the Contribution of Molecular-Enriched Functional Connectivity to Brain-Age Analysis.

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Paper

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The authors' code

Python · 7 lines · 88 B · MIT

  1. __version__ = '0.1.7.post1'
  2. __all__ = [ # noqa
  3. 'utils'
  4. ]
  5. from . import * # noqa

__init__.py at commit 48462c0, under MIT · at the source

Overview

Authors: Marco Pinamonti1, Manuela Moretto1,2, Valentina Sammassimo1, Marco Castellaro1, Mattia Veronese1,2
  1. Department of Information Engineering, University of Padua, Padua, Italy
  2. Institute of Psychiatry, Psychology & Neuroscience, Department of Neuroimaging, King's College London, London, UK
Institutions: University of Padua (Italy); King's College London (United Kingdom)
Journal: Human brain mapping, volume 47, issue 13, article e70627
Dates: received 7 November 2025; accepted 26 July 2026; published online 1 September 2026; in print September 2026
Type: Research article · Language: English
License: CC BY
Identifiers: DOI 10.1002/hbm.70627 · PMID 42681925 · PMCID PMC13535138 · OpenAlex W4415276263
Open access: gold, a free copy (OpenAlex)
Status: code verified
Categories: structural MRI / diffusion (modality), fMRI (modality), human (organism), cellular / molecular (subfield)
Methods: Spectral & time-frequency, Statistics, Machine learning, Connectivity, fMRI & imaging, Preprocessing
Keywords: brain‐age, molecular‐enriched functional connectivity, MRI
MeSH: Aging*, Brain*, Connectome*, Magnetic Resonance Imaging*, Nerve Net*, Adolescent, Adult, Aged, Aged, 80 and over, Female, Humans, Male, Middle Aged, Young Adult (* major topic)
Topic: Functional Brain Connectivity Studies (Cognitive Neuroscience, Neuroscience), according to OpenAlex
Funding: Ministero dell’Istruzione, dell’Università e della Ricerca (PNC0000002); NIMH NIH HHS (R01 MH081218, R01 MH083246, R21 MH084126, R01 MH094639); NIA NIH HHS (U01 AG052564); Biotechnology and Biological Sciences Research Council (BB/H008217/1)
Citations: not cited yet (Europe PMC); 109 references in the paper

Abstract

Brain‐age prediction from neuroimaging data provides a proxy of biological aging, yet most models rely on structural magnetic resonance imaging (MRI), a modality that captures macroanatomy but offers limited biological specificity. We tested whether integrating molecular‐enriched functional connectivity (FC) from resting‐state functional MRI (rs‐fMRI) data improves brain‐age prediction and biological explainability. We analyzed MRI data of 2120 healthy adults (1243/877 F/M; 18–90 years) from three public datasets. Molecular‐enriched connectivity maps were derived with Receptor‐Enriched Analysis of functional Connectivity by Targets (REACT) using receptor‐density templates for the dopamine (DAT), norepinephrine (NET), and serotonin (SERT) transporter systems. Support vector regression models were applied to predict chronological age from molecular‐enriched FC, structural morphometry, or both combined. The effect of multi‐site variability was mitigated via ComBat harmonization with and without Empirical Bayes pooling. We additionally conducted a common‐parcellation analysis to assess the impact of differing parcellations between modalities. Single‐transporter molecular‐enriched FC explained up to 51% of age variance. The most predictive transporter varied by dataset, with DAT dominating in the harmonized and common‐parcellation settings. Combining the three molecular‐enriched maps consistently improved prediction over any single map and increased explained variance up to 64%. Structural morphometry remained the strongest single modality overall. In the merged multi‐site cohort using a common parcellation, adding transporter‐enriched FC to structural features yielded a small but consistent reduction in prediction error (mean absolute error (MAE) from 6.02 to 5.81 years), supporting limited complementarity between the two modalities. Residual‐level paired comparisons across repeated cross‐validation confirmed that this improvement is statistically reliable but modest in magnitude. In contrast, when different parcellations were applied, incorporating molecular‐enriched FC into brain age prediction resulted in a 2% higher MAE compared to structural morphometry alone, suggesting that parcellation mismatch may obscure the functional contributions. In conclusion, molecular‐enriched FC is a feasible and biologically informative extension to brain‐age modeling; however, its added predictive value over structural morphometry was modest and depended on harmonization and atlas alignment.

Reproduced under the paper's license (CC BY), from the paper cited above.

Repository

Its files are read in the Code ↔ Paper reader above.

ottaviadipasquale/react-fmri

License: MIT
State: the link answers, verified on 26 September 2026
Evidence: files inventoried
Commit: 48462c0a94e8cc0db9625742b3d9c4054bd8ab79, 23 August 2023
Languages: Python (3)
Size: 13 files, 3 scripts
Software Heritage: archived
Found in: “Data Availability Statement”
Holds: README, license file, environment (setup.py)
Not found: CITATION.cff, tests, continuous integration, documentation
Tools: NumPy (1 file)
Availability: 1 check, the latest on 26 September 2026: the link answers
  • 26 September 2026: the link answers
5 files

The paper's code and data availability statement is in the Data section.

Tracing map

Proposed by the machine: these links were found in the paper and verified at the source, without human review. The map will receive a Zenodo DOI once one of the paper's authors has validated it with their ORCID.

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  • 1 repository of the authors' code, each at its verified commit, with its license and how the link was found in the paper;
  • 3 scripts, each with its path and the digest of its content;
  • no match between paragraphs and code yet;
  • neither the text of the paper nor the code itself.

Its JSON (tracing-map.json) is deposited on Zenodo with its DOI once the map is validated.

Data

Datasets cited

Data Availability Statement

All neuroimaging data used in this study are publicly accessible. T1w and rs‐fMRI scans from Cam‐CAN are available at https://camcan‐archive.mrc‐cbu.cam.ac.uk/dataaccess/ (https://camcan-archive.mrc-cbu.cam.ac.uk/dataaccess/) (Shafto et al. 2014; Taylor et al. 2017). HCP‐Aging data can be downloaded from https://www.humanconnectome.org/study/hcp‐lifespan‐aging (https://www.humanconnectome.org/study/hcp-lifespan-aging) (Bookheimer et al. 2019; Harms et al. 2018). NKI‐RS data are provided at https://fcon_1000.projects.nitrc.org/indi/enhanced/ (Nooner et al. 2012; Tobe et al. 2022). Preprocessing pipelines relied exclusively on publicly available BIDS‐Apps: functional MRI Preprocessing (fMRIPrep) (v23.2.2, https://fmriprep.org/en/23.2.2/), XCP‐D (v0.7.4, https://xcp‐d.readthedocs.io/en/0.7.4/ (https://xcp-d.readthedocs.io/en/0.7.4/)), and MRIQC (v24.1.0, https://mriqc.readthedocs.io/en/latest/) or common neuroimaging tools as FSL (v7.3.2, https://fsl.fmrib.ox.ac.uk/fsl/docs/). REACT was implemented with the open‐source react‐fmri package, available at https://github.com/ottaviadipasquale/react‐fmri (https://github.com/ottaviadipasquale/react-fmri). Custom scripts for brain‐age modeling (SVR) and feature harmonization with ComBat were written for local execution and are available upon reasonable request from the corresponding author under a standard data‐use agreement.

Reproduced under the paper's license (CC BY), from the paper cited above.

Versions

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Version 1, 27 September 2026: the first record

Recorded: type, language, journal, volume, issue, pages, dates, 5 authors, 3 keywords, 14 MeSH terms, 4 funders, 103 references.

Cite

This paper

Pinamonti, M., Moretto, M., Sammassimo, V., Castellaro, M., & Veronese, M. (2026). Investigating the Contribution of Molecular-Enriched Functional Connectivity to Brain-Age Analysis. Human brain mapping, 47(13), e70627. https://doi.org/10.1002/hbm.70627

BibTeX

@article{pinamonti2026investigating,
author = {Pinamonti, Marco and Moretto, Manuela and Sammassimo, Valentina and Castellaro, Marco and Veronese, Mattia},
title = {{Investigating the Contribution of Molecular-Enriched Functional Connectivity to Brain-Age Analysis}},
journal = {Human brain mapping},
year = {2026},
month = sep,
volume = {47},
number = {13},
pages = {e70627},
publisher = {Wiley},
issn = {1065-9471},
doi = {10.1002/hbm.70627},
url = {https://doi.org/10.1002/hbm.70627},
pmid = {42681925},
pmcid = {PMC13535138}
}

RIS

TY - JOUR
AU - Pinamonti, Marco
AU - Moretto, Manuela
AU - Sammassimo, Valentina
AU - Castellaro, Marco
AU - Veronese, Mattia
TI - Investigating the Contribution of Molecular-Enriched Functional Connectivity to Brain-Age Analysis
T2 - Human brain mapping
J2 - Hum Brain Mapp
PY - 2026
DA - 2026/09/01
VL - 47
IS - 13
SP - e70627
SN - 1065-9471
PB - Wiley
DO - 10.1002/hbm.70627
UR - https://doi.org/10.1002/hbm.70627
LA - en
ER -

CSL-JSON

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