OSCR

Hypothesis-free evaluation of circulating metabolome provides cell-specific insights regarding the role of energy substrate availability in amyotrophic lateral sclerosis.

Overview

Authors: Elham Alhathli1,2, Johnathan Cooper-Knock1,3, Zain-Ul-Abideen Girach1, Thomas H. Julian4,5, Claudia Bauer1, Hannah O. Timmons1, Billie D. Ward1, Heather Walker1, Mimoun Azzouz1, Mohamed A. Elrayess6, Fatima Al-Khelaifi7, Noha A. Yousri8, Aytac Gul9, Alan Kelsall10, Tobias Moll1, Calum Harvey1, Sarah Gornall1, Kari Wong11, Scott P. Allen1, Andrew Strange1,3, Pamela J. Shaw1,3
  1. Sheffield Institute for Translational Neuroscience, University of Sheffield,Glossop Road, Sheffield, S10 2HQ UK
  2. Faculty of Nursing, Taif University,Taif, Saudi Arabia
  3. NIHR Sheffield Biomedical Research Centre (BRC), Sheffield Teaching Hospitals NHS Foundation Trust,Glossop Road, Sheffield, S10 2JF UK
  4. Division of Evolution, Infection and Genomics, School of Biological Sciences, The University of Manchester,Manchester, UK
  5. Christabel Pankhurst Institute, The University of Manchester,Manchester, UK
  6. Biomedical Research Center (BRC), QU Health, Qatar University,P.O. Box 2713, Doha, Qatar
  7. Anti-Doping Laboratory Qatar,Doha, Qatar
  8. Computer and Systems Engineering, Faculty of Engineering, Alexandria University,Alexandria, Egypt
  9. Department of Medical Biology, Tayfur Ata Sökmen Medical Faculty, Hatay Mustafa Kemal University,Antakya, Turkey
  10. School of Medicine and Population Health, University of Sheffield,Sheffield, UK
  11. Metabolon Inc,Durham, NC USA
Institutions: University of Sheffield (United Kingdom); Taif University (Saudi Arabia); Sheffield Teaching Hospitals NHS Foundation Trust (United Kingdom); University of Manchester (United Kingdom); Qatar University (Qatar); Anti-Doping Laboratory (Qatar); Alexandria University (Egypt); Mustafa Kemal University (Türkiye); Metabolon (United States) (United States)
Journal: BMC medicine, volume 24, issue 1, article 233
Dates: received 8 October 2025; accepted 16 February 2026; published online 6 March 2026
Type: Research article · Language: English
License: CC BY
Identifiers: DOI 10.1186/s12916-026-04727-w · PMID 41787388 · PMCID PMC13077999 · OpenAlex W7133849714
Open access: gold, a free copy (OpenAlex)
Status: data only
Categories: genetics / omics (modality), human (organism), mouse (organism), other condition (population), cellular / molecular (subfield)
Methods: Spectral & time-frequency, Statistics, Smoothing, state filtering, decompositions, Machine learning, Connectivity
Keywords: Amyotrophic lateral sclerosis, Metabolomics, Mendelian randomisation, Acetylcarnitine, Carnitine shuttle, Cerebrospinal fluid, Energy metabolism, Neuronal vulnerability, GLUT3
MeSH: Amyotrophic Lateral Sclerosis*, Energy Metabolism*, Metabolome*, Animals, Astrocytes, C9orf72 Protein, Female, Humans, Male, Mendelian Randomization Analysis, Mice, Neurons (* major topic)
Topic: Amyotrophic Lateral Sclerosis Research (Neurology, Medicine), according to OpenAlex
Funding: Taif University; Motor Neurone Disease Association (894-791, 956-799); Target ALS (Target ALS Foundation); UK Research and Innovation Future (MR/Z504105/1); Academy of Medical Sciences (SBF005\1064); Neurocare; My Name'5 Doddie Foundation (DOD/14/43); National Institute for Health (NF-SI-0617-10077); NIHR Sheffield Biomedical Research Centre (NIHR 203321)
Citations: cited by 2 papers (Europe PMC); 61 references in the paper

Abstract

Background: Amyotrophic lateral sclerosis (ALS) is a neurodegenerative disease with limited therapeutic options. The circulating metabolome comprises small molecules present in plasma/serum which are the intermediates and end-products of cellular metabolism, and is linked to ALS pathogenesis.

Methods: We conducted hypothesis-free two-sample Mendelian randomisation (MR) analysis of the concentration of 575 plasma/serum metabolites, to determine which are causally linked to risk of ALS. Significant metabolites were validated in an independent GWAS of plasma/serum metabolite concentrations and evaluated for sex-specific effects. Correlations between directly measured patient biofluid metabolite concentrations and ALS risk/severity were examined in 94 ALS patients and 40 controls. We experimentally assessed metabolic function in a murine neurons and human astrocytes carrying an ALS-associated G4C2-repeat expansion within C9orf72.

Results: MR causally associated five metabolites with ALS risk after multiple-testing correction. Higher serum concentration of glycoprotein acetyls (P = 9.7e − 9, β = 0.21) and the peptide DSGEGDFXAEGGGVR (P = 8.0e − 6, β = 0.22) was associated with increased ALS risk, whereas higher plasma concentration of phenylalanylserine, isobutyrylcarnitine, and acetylcarnitine was protective (P < 5e − 5, β = − 0.29 to − 0.72). DSGEGDFXAEGGGVR has been linked to glucose metabolism but we have used genetic fine-mapping to link DSGEGDFXAEGGGVR, neuronal glucose uptake through GLUT3, and ALS risk. Direct measurement of metabolite concentrations in patient biofluids revealed elevated acetylcarnitine levels in patients with ALS, which were associated with delayed symptom onset (Cox regression, P = 0.02, HR = 0.4). Similarly, lactate is elevated in ALS patient CSF (ANOVA, P = 1.3e − 3) and in patients with longer survival time (Cox regression, P = 0.03, HR = 0.3). Plasma fructose is elevated in ALS patients with shorter survival time (Cox regression, P = 0.02, HR = 1.1). In vitro, neurons and astrocytes carrying an ALS-associated G4C2-repeat expansion within C9orf72 demonstrated reduced metabolic flexibility.

Conclusions: We provide evidence that impaired energy substrate availability contributes to ALS risk and severity. CNS cell types differ in their use of energy substrates and therefore we postulate the relative importance of different cell types for different stages of disease. Our findings support further investigation of metabolic interventions to treat or prevent ALS.

Supplementary Information: The online version contains supplementary material available at 10.1186/s12916-026-04727-w.

Reproduced under the paper's license (CC BY), from the paper cited above.

Code

The paper links to its data, not to its authors' code: see the Data section.

Tracing map

A tracing map links a paper to the code its authors published: this paper has none, so it has no map.

Data

Datasets cited

Data availability

The raw data for the metabolic flux experiments can be found in Additional Data 1. Anonymised metabolic profiling data from the AMBRoSIA project can be provided upon request by a qualified researcher.

Reproduced under the paper's license (CC BY), from the paper cited above.

Versions

The history of this record: each version stored by the harvester or made by a correction of its authors or of the maintainers of its code, and what changed in its facts. The texts of the paper (its abstract, its availability statements) are not part of it; versions that changed only those are not listed.

Version 1, 30 September 2026: the first record

Recorded: type, language, journal, volume, issue, pages, dates, 21 authors, 9 keywords, 12 MeSH terms, 9 funders, 60 references.

Cite

This paper

Alhathli, E., Cooper-Knock, J., Girach, Z.-U.-A., Julian, T. H., Bauer, C., Timmons, H. O., Ward, B. D., Walker, H., Azzouz, M., Elrayess, M. A., Al-Khelaifi, F., Yousri, N. A., Gul, A., Kelsall, A., Moll, T., Harvey, C., Gornall, S., Wong, K., Allen, S. P., . . . Shaw, P. J. (2026). Hypothesis-free evaluation of circulating metabolome provides cell-specific insights regarding the role of energy substrate availability in amyotrophic lateral sclerosis. BMC medicine, 24(1), 233. https://doi.org/10.1186/s12916-026-04727-w

BibTeX

@article{alhathli2026hypothesis,
author = {Alhathli, Elham and Cooper-Knock, Johnathan and Girach, Zain-Ul-Abideen and Julian, Thomas H. and Bauer, Claudia and Timmons, Hannah O. and Ward, Billie D. and Walker, Heather and Azzouz, Mimoun and Elrayess, Mohamed A. and Al-Khelaifi, Fatima and Yousri, Noha A. and Gul, Aytac and Kelsall, Alan and Moll, Tobias and Harvey, Calum and Gornall, Sarah and Wong, Kari and Allen, Scott P. and Strange, Andrew and Shaw, Pamela J.},
title = {{Hypothesis-free evaluation of circulating metabolome provides cell-specific insights regarding the role of energy substrate availability in amyotrophic lateral sclerosis}},
journal = {BMC medicine},
year = {2026},
month = mar,
volume = {24},
number = {1},
pages = {233},
publisher = {BioMed Central},
issn = {1741-7015},
doi = {10.1186/s12916-026-04727-w},
url = {https://doi.org/10.1186/s12916-026-04727-w},
pmid = {41787388},
pmcid = {PMC13077999}
}

RIS

TY - JOUR
AU - Alhathli, Elham
AU - Cooper-Knock, Johnathan
AU - Girach, Zain-Ul-Abideen
AU - Julian, Thomas H.
AU - Bauer, Claudia
AU - Timmons, Hannah O.
AU - Ward, Billie D.
AU - Walker, Heather
AU - Azzouz, Mimoun
AU - Elrayess, Mohamed A.
AU - Al-Khelaifi, Fatima
AU - Yousri, Noha A.
AU - Gul, Aytac
AU - Kelsall, Alan
AU - Moll, Tobias
AU - Harvey, Calum
AU - Gornall, Sarah
AU - Wong, Kari
AU - Allen, Scott P.
AU - Strange, Andrew
AU - Shaw, Pamela J.
TI - Hypothesis-free evaluation of circulating metabolome provides cell-specific insights regarding the role of energy substrate availability in amyotrophic lateral sclerosis
T2 - BMC medicine
J2 - BMC Med
PY - 2026
DA - 2026/03/06
VL - 24
IS - 1
SP - 233
SN - 1741-7015
PB - BioMed Central
DO - 10.1186/s12916-026-04727-w
UR - https://doi.org/10.1186/s12916-026-04727-w
LA - en
ER -

CSL-JSON

{
"id": "10.1186/s12916-026-04727-w",
"type": "article-journal",
"title": "Hypothesis-free evaluation of circulating metabolome provides cell-specific insights regarding the role of energy substrate availability in amyotrophic lateral sclerosis",
"container-title": "BMC medicine",
"author": [
{
"family": "Alhathli",
"given": "Elham"
},
{
"family": "Cooper-Knock",
"given": "Johnathan"
},
{
"family": "Girach",
"given": "Zain-Ul-Abideen"
},
{
"family": "Julian",
"given": "Thomas H."
},
{
"family": "Bauer",
"given": "Claudia"
},
{
"family": "Timmons",
"given": "Hannah O."
},
{
"family": "Ward",
"given": "Billie D."
},
{
"family": "Walker",
"given": "Heather"
},
{
"family": "Azzouz",
"given": "Mimoun"
},
{
"family": "Elrayess",
"given": "Mohamed A."
},
{
"family": "Al-Khelaifi",
"given": "Fatima"
},
{
"family": "Yousri",
"given": "Noha A."
},
{
"family": "Gul",
"given": "Aytac"
},
{
"family": "Kelsall",
"given": "Alan"
},
{
"family": "Moll",
"given": "Tobias"
},
{
"family": "Harvey",
"given": "Calum"
},
{
"family": "Gornall",
"given": "Sarah"
},
{
"family": "Wong",
"given": "Kari"
},
{
"family": "Allen",
"given": "Scott P."
},
{
"family": "Strange",
"given": "Andrew"
},
{
"family": "Shaw",
"given": "Pamela J."
}
],
"container-title-short": "BMC Med",
"volume": "24",
"issue": "1",
"page": "233",
"DOI": "10.1186/s12916-026-04727-w",
"PMID": "41787388",
"PMCID": "PMC13077999",
"ISSN": "1741-7015",
"publisher": "BioMed Central",
"URL": "https://doi.org/10.1186/s12916-026-04727-w",
"language": "en",
"issued": {
"date-parts": [
[
2026,
3,
6
]
]
}
}

Similar papers

The papers with a page that share the most with this one: the tools found in their code, their categories, datasets, cited references and authors, the rarest counting most.

[1] doi:10.21203/rs.3.rs-9853460/v1 [code]
Single-nucleus multiomic atlas of ALS primary motor cortex nominates neuroprotective WDR49-expressing astrocytes
Journal: Research Square (preprint)
In common: genetics / omics, other condition, 4 references, author Johnathan Cooper-Knock
[2] doi:10.1038/s41598-026-38039-z [code]
Comparison of AAV9-driven motor neuron transduction following different CNS-directed delivery methods in mice.
Journal: Scientific reports
In common: mouse, author Mimoun Azzouz
[3] doi:10.1038/s44184-026-00232-3
Integrated proteomic, transcriptomic, and epigenomic profiling identifies SRA1 as a novel therapeutic target for postpartum depression.
Journal: Npj mental health research
In common: genetics / omics, 3 references
[4] doi:10.1371/journal.pcbi.1014422 [code]
Deciphering cell type-specific causal genetic effects on brain imaging-derived phenotypes and disorders with single-cell Mendelian randomization.
Journal: PLoS computational biology
In common: genetics / omics, cellular / molecular, 3 references
[5] doi:10.1186/s40035-026-00567-z
Transaldolase 1 contributes to pentose phosphate pathway disruption and synaptic dysfunction in Alzheimer's disease.
Journal: Translational neurodegeneration
In common: genetics / omics, mouse, cellular / molecular, 2 references
[6] doi:10.1186/s13024-026-00944-2
TDP-43: [GU]-ardian of the transcriptome.
Journal: Molecular neurodegeneration
In common: genetics / omics, other condition, cellular / molecular, 2 references
[7] doi:10.1093/brain/awaf360
MYC-driven gliosis impairs neuron-glia communication in amyotrophic lateral sclerosis.
Journal: Brain : a journal of neurology
In common: other condition, mouse, cellular / molecular, 2 references
[8] doi:10.1038/s41593-026-02300-5 [code]
Integrated single-cell and spatial transcriptomic profiling in ALS uncovers peripheral-to-central immune infiltration and reprogramming.
Journal: Nature neuroscience
In common: genetics / omics, other condition, cellular / molecular, 2 references
[9] doi:10.1016/j.xcrm.2026.102758
BDNF insufficiency exacerbates ALS progression.
Journal: Cell reports. Medicine
In common: other condition, mouse, cellular / molecular, 2 references
[10] doi:10.1186/s40478-026-02341-8 [code]
Intrathecal (G&lt;sub&gt;4&lt;/sub&gt;C&lt;sub&gt;2&lt;/sub&gt;)&lt;sub&gt;149&lt;/sub&gt; delivery in C9orf72-deficient mice yields mild motor dysfunction and ALS/FTD pathological hallmarks.
Journal: Acta neuropathologica communications
In common: other condition, mouse, cellular / molecular, 2 references

Contribute

The authors of this paper can claim it, correct its record and validate its tracing map, and the maintainers of its code (its owner, or a public member of its organization) correct what it says of their repository; anyone signed in can ask for its removal. Every request goes to OSCR's own machine, which answers it; your account page follows them.

Sign in with ORCID to claim this paper as one of its authors, correct its record or validate its tracing map: when the paper's metadata lists your ORCID iD, you are recognized at once. Maintainers of its code: sign in with GitHub, then claim the repository on your account page.

Request its removal

To ask OSCR to remove this record, the copies of its authors' scripts or its tracing map, use the removal request page: signed in, you say who you are, what to remove and why, then review and confirm the request. Published rules decide every request (how).

Discussion, reproductions, activity

Discussion: questions and error reports about this paper and its code, from signed-in readers and its authors. It opens with sign-in.

Reproductions: reports from readers who ran the authors' code: what they reproduced, with which environment, commit and data. It opens with sign-in.

Activity: what happens around this paper: new versions of its record, its map's validation, discussions and reproductions. It opens with sign-in.