intracellular / patch clamp

Modality: 212 papers with a page, 138 of them with their authors' code.

Monday, 28 September 2026 (1 paper)

[1] doi:10.1007/s00424-026-03212-w [paper, data]

Analysis of sodium self-inhibition of the epithelial sodium channel (ENaC) using classical and medium-throughput automated two-electrode voltage-clamp recordings.

Journal: Pflugers Archiv : European journal of physiology

Status: data only, 1 dataset cited

Thursday, 17 September 2026 (1 paper)

[2] doi:10.1038/s41467-026-77508-x [paper, data]

Structures of the volume-regulated anion channel LRRC8A/D in activating and inhibiting conditions.

Journal: Nature communications

Status: data only, 4 datasets cited

Tuesday, 1 September 2026 (1 paper)

[3] Code ↔ Paper doi:10.1007/s12021-026-09814-0 [paper, repository]

Application of Machine Learning Models to Identify Differences in Neural Electrophysiological Properties Across Estrous Cycle Phases.

Journal: Neuroinformatics

Authors' code: doi:10.5061/dryad.k0p2ngfgm (no license), Armaan-Raina/Estrous-Phase-Classification (MIT)

Status: code verified, 3 files readable, 4 matches

Sunday, 30 August 2026 (1 paper)

[4] Code ↔ Paper doi:10.1113/ep093939 [paper, repository]

Temperature dependence of HCN channel kinetics: A systematic comparison across mammalian isoforms and species.

Journal: Experimental physiology

Authors' code: channelpedia.net (no license)

Status: code verified

Thursday, 20 August 2026 (1 paper)

[5] doi:10.1038/s41467-026-76831-7 [paper, data]

Structural origins of species-specific differences in TRPV2 activation.

Journal: Nature communications

Status: data only, 2 datasets cited

Friday, 14 August 2026 (1 paper)

[6] Code ↔ Paper doi:10.1126/sciadv.adz4123 [paper, repository]

Highly attenuated dendritic propagation of isolated synaptic potentials in vivo.

Journal: Science advances

Authors' code: NTCColumbia (no license)

Status: code verified

Wednesday, 5 August 2026 (1 paper)

[7] Code ↔ Paper doi:10.1016/j.celrep.2026.117794 [paper, repository]

Subicular plateaus signal reward locations during goal-directed behavior.

Journal: Cell reports

Authors' code: Zenodo 21177036 (CC-BY-4.0)

Status: code verified, 25 files readable, 6 matches

Thursday, 30 July 2026 (1 paper)

[8] doi:10.3390/toxics14080674 [paper, data]

Subchronic PAH Exposure Impacts Cardiac Electrophysiology of the Polar Fish, Navaga Cod (<i>Eleginus nawaga</i>).

Journal: Toxics

Status: data only, 1 dataset cited

Thursday, 23 July 2026 (1 paper)

[9] Code ↔ Paper doi:10.7554/elife.110013 [paper, repository]

Large-scale synthetic data enable digital twins of human excitable cells.

Journal: eLife

Authors' code: clancylabucd/digital-twin-for-the-win-personalized-cardiac-electrophysiology (CC-BY-NC-4.0)

Status: code verified, 17 files readable, 6 matches

Wednesday, 15 July 2026 (1 paper)

[10] doi:10.3389/fphar.2026.1881525 [paper, data]

Pentylenetetrazole kindling impairs place recognition memory associated with suppressing proBDNF-mediated neural information flows at the hippocampal CA3-CA1 synapses.

Journal: Frontiers in pharmacology

Status: data only, 1 dataset cited

Wednesday, 1 July 2026 (1 paper)

[11] Code ↔ Paper doi:10.1038/s41467-026-74834-y [paper, repository]

Voltage imaging of CA1 pyramidal cells and SST+ interneurons reveals stability and plasticity mechanisms of spatial firing.

Journal: Nature communications

Authors' code: yoavadamlab (no license)

Status: code verified

Friday, 26 June 2026 (1 paper)

[12] Code ↔ Paper doi:10.3389/fnsyn.2026.1843277 [paper, repository]

High-frequency, high-intensity electrical stimulation selectively activates human fast-spiking interneurons.

Journal: Frontiers in synaptic neuroscience

Authors' code: flosfor/pvbs (GPL-3.0)

Status: code verified, 3 files readable, 2 matches

Tuesday, 23 June 2026 (1 paper)

[13] Code ↔ Paper doi:10.1038/s41467-026-74569-w [paper, repository]

Motor cortex directly excites the substantia nigra pars reticulata, the basal ganglia output nucleus.

Journal: Nature communications

Authors' code: wstho/brainblenda (GPL-3.0)

Status: code verified, 5 files readable

Wednesday, 3 June 2026 (1 paper)

[14] Code ↔ Paper doi:10.1038/s42003-026-10418-2 [paper, repository]

Cortical PV and VIP interneurons similarly influence SST neuron output despite distinct unitary properties.

Journal: Communications biology

Authors' code: Zenodo 19664110 (CC-BY-4.0)

Status: code verified

Monday, 1 June 2026 (3 papers)

[15] doi:10.1093/neuonc/noag059 [paper, data]

Combined patch-clamp electrophysiology and single-cell genomic analysis reveal spiking tumor cells at the neocortical glioblastoma interface in humans.

Journal: Neuro-oncology

Status: data only, 1 dataset cited

[16] Code ↔ Paper doi:10.1038/s41565-026-02180-7 [paper, repository]

Intracellular neuronal recordings across DNA tiles.

Journal: Nature nanotechnology

Authors' code: shulanx1/dnatiles (no license), shulanx1/DNAtiles_analysis (no license), Zenodo 18702671 (CC-BY-4.0), Zenodo 18702664 (CC-BY-4.0)

Status: code verified, 142 files readable, 1 match

[17] Code ↔ Paper doi:10.1038/s41467-026-73772-z [paper, repository]

Nociceptor circadian clock genes control excitability and pain perception in mice in a sex- and time-dependent manner.

Journal: Nature communications

Authors' code: ComputationalGenomicsLaboratory/naiveDRG (no license), AurelieBre/DRGPatchClampProcessing (no license), Zenodo 20072530 (CC-BY-4.0), Zenodo 19856603 (CC-BY-4.0)

Status: code verified, 308 files readable, 7 matches

Thursday, 28 May 2026 (1 paper)

[18] Code ↔ Paper doi:10.1016/j.celrep.2026.117388 [paper, repository]

An unsuspected physiological role for mGluRIII glutamate receptors in hippocampal area CA1.

Journal: Cell reports

Authors' code: OSF ucj2d (no license), scimemia/mGluRIII (GPL-3.0), Zenodo 19455971 (GPL-3.0)

Status: code verified, 100 files readable, 5 matches

Tuesday, 12 May 2026 (1 paper)

[19] Code ↔ Paper doi:10.1038/s41467-026-72935-2 [paper, repository]

Spindle neurons in human cortex possess distinctive firing properties and transcriptomic signatures.

Journal: Nature communications

Authors' code: OpenGene/fastp (MIT), Youshengshu/Human_VEN (no license)

Status: code verified, 92 files readable, 16 matches

Thursday, 30 April 2026 (1 paper)

[20] doi:10.1186/s13287-026-05027-z [paper, data]

Functional development of photoreceptors in human retinal organoids.

Journal: Stem cell research & therapy

Status: data only, 1 dataset cited

Wednesday, 29 April 2026 (1 paper)

[21] doi:10.1186/s12967-026-08207-w [paper, data]

Comprehensive multiomics analyses identify guanylate cyclase activator 1A as a photoreceptor-specific target in a murine model of oxygen-induced retinopathy.

Journal: Journal of translational medicine

Status: data only, 1 dataset cited

Saturday, 25 April 2026 (1 paper)

[22] doi:10.1007/s00424-026-03173-0 [paper, data]

Guinea pig δβγ-ENaC is locked in an open state and uncoupled from regulation by proteases.

Journal: Pflugers Archiv : European journal of physiology

Status: data only, 1 dataset cited

Thursday, 23 April 2026 (1 paper)

[23] Code ↔ Paper doi:10.1038/s41467-026-72257-3 [paper, repository]

HCN1 is a primary HCN Pacemaker Channel in Neurons.

Journal: Nature communications

Authors' code: OSF 7g5ch (no license)

Status: code verified, 3 files readable, 3 matches

Tuesday, 21 April 2026 (2 papers)

[24] Code ↔ Paper doi:10.1038/s43856-026-01595-6 [paper, repository]

Non-vectorial integration of intersectional short-pulse stimulation enables enhanced deep brain modulation and effective seizure control.

Journal: Communications medicine

Authors' code: pypi.org/project/pyabf (no license)

Status: code verified

[25] Code ↔ Paper doi:10.1038/s41467-026-71914-x [paper, repository]

Developmental emergence of sparse and structured synaptic connectivity in the hippocampal CA3 memory circuit.

Journal: Nature communications

Authors' code: research-explorer.ista.ac.at/download/21442 (no license)

Status: code verified

Friday, 17 April 2026 (1 paper)

[26] doi:10.1371/journal.pbio.3003749 [paper, data]

Somatosensory input drives membrane potential dynamics in motor cortex during voluntary limb movement.

Journal: PLoS biology

Status: data only, 1 dataset cited

Monday, 13 April 2026 (1 paper)

[27] Code ↔ Paper doi:10.1038/s42003-026-10063-9 [paper, repository]

Conserved Kir channel mechanisms governing intrinsic excitability in human and rodent parvalbumin neurons.

Journal: Communications biology

Authors' code: HCEMM/ZoneSig (MIT), APPLICATION (no license)

Status: code verified, 13 files readable, 6 matches

Tuesday, 7 April 2026 (1 paper)

[28] Code ↔ Paper doi:10.1038/s41467-026-71112-9 [paper, repository]

Modelling synaptic dysfunction in childhood dementia using human iPSC-derived cortical networks.

Journal: Nature communications

Authors' code: bardylab/MPSIIIA_snRNAseq_Synaptic_Paper_2026 (no license)

Status: code verified, 4 files readable, 13 matches

Friday, 3 April 2026 (1 paper)

[29] Code ↔ Paper doi:10.1038/s41467-026-71426-8 [paper, repository]

Distinct modes of dopamine modulation on striatopallidal synaptic transmission.

Journal: Nature communications

Authors' code: Zenodo 18608880 (MIT), yelee03153/Striatopallidalsynapse (MIT)

Status: code verified, 122 files readable, 11 matches

Monday, 23 March 2026 (1 paper)

[30] doi:10.1038/s41598-026-43836-7 [paper, data]

Persistence of vestibular function in the absence of glutamatergic transmission from hair cells.

Journal: Scientific reports

Status: data only, 1 dataset cited

Monday, 16 March 2026 (1 paper)

[31] doi:10.1371/journal.pcbi.1014059 [paper, repository]

Benchmarking spike source localization algorithms in high density probes.

Journal: PLoS computational biology

Authors' code: haozhao1996/Spike-Localization-Algorithms (MIT)

Status: code verified, 6 files readable, 3 matches

Saturday, 14 March 2026 (1 paper)

[32] doi:10.1002/epi.70153 [paper, repository]

KCNJ4 variants disrupt inward-rectifier potassium channel function and cause refractory epilepsy.

Journal: Epilepsia

Authors' code: figshare 963153 (CC-BY-4.0)

Status: empty repository

Sunday, 1 March 2026 (1 paper)

[33] doi:10.1002/hipo.70081 [paper, repository]

Spatial Organization of Morpho-Electric Subtypes of Pyramidal Neuron in the Subiculum.

Journal: Hippocampus

Authors' code: neurodroid/stimfit (GPL-2.0)

Status: code verified, 237 files readable, 2 matches

Thursday, 5 February 2026 (2 papers)

[34] doi:10.1523/eneuro.0452-25.2026 [paper, repository]

Fast Spiking Interneurons Autonomously Generate Fast Gamma Oscillations in the Medial Entorhinal Cortex with Excitation Strength Tuning ING-PING Transitions.

Journal: eNeuro

Authors' code: AnanthVS23/mEC_Network_Simulations (no license), modeldb:150031 (no license), ccanav/pastoll_et_al_2013 (no license)

Status: code verified, 44 files readable, 8 matches

[35] doi:10.1002/advs.202521090 [paper, data]

Selectivity Filter Dynamics Define Ion Conductance and Selectivity Differences in CNG and HCN Channels.

Journal: Advanced science (Weinheim, Baden-Wurttemberg, Germany)

Status: data only, 1 dataset cited

Monday, 2 February 2026 (1 paper)

[36] doi:10.1371/journal.pone.0339418 [paper, data]

Complex excitability and "flipping" of granule cells: An experimental and computational study.

Journal: PloS one

Status: data only, 1 dataset cited

Sunday, 1 February 2026 (1 paper)

[37] doi:10.1096/fj.202503698r [paper, data]

Human Dorsal Root Ganglia Neuronal Cell Line to Study Nociceptive Signaling: A New Pipeline for Pain Therapy.

Journal: FASEB journal : official publication of the Federation of American Societies for Experimental Biology

Status: data only, 1 dataset cited

Wednesday, 28 January 2026 (1 paper)

[38] doi:10.1371/journal.pone.0339890 [paper, repository]

A novel methodology to characterize beat-to-beat alternations in whole-cell calcium currents.

Journal: PloS one

Authors' code: xavierMarimon/PatchClampAlternan (no license)

Status: code verified, 16 files readable, 1 match

Tuesday, 27 January 2026 (1 paper)

[39] doi:10.1371/journal.pcbi.1013889 [paper, repository]

A model for the human fetal ventricular myocyte electrophysiology.

Journal: PLoS computational biology

Authors' code: stelong/GPErks (MIT)

Status: code verified, 73 files readable, 2 matches

Wednesday, 14 January 2026 (1 paper)

[40] doi:10.1073/pnas.2503909123 [paper, repository]

Proton-selective conductance and gating of the lysosomal cation channel TMEM175.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: Zenodo 14719866 (CC-BY-4.0)

Status: code verified

Wednesday, 7 January 2026 (1 paper)

[41] doi:10.1016/j.jbc.2026.111131 [paper, data]

Structural basis and functional analysis of NMDA receptor regulation by calmodulin.

Journal: The Journal of biological chemistry

Status: data only, 1 dataset cited

Thursday, 1 January 2026 (1 paper)

[42] doi:10.1111/jnc.70360 [paper, repository]

Sevoflurane Inhibits Layer 5 Pyramidal Neurons via Kv1.2-Dependent Modulation of Subthreshold Currents.

Journal: Journal of neurochemistry

Authors' code: gin.g-node.org/aeltona/sevoflurane-l5 (no license)

Status: code verified, 4 files readable, 4 matches

Monday, 22 December 2025 (2 papers)

[43] doi:10.7554/elife.98817 [paper, data]

Cone bipolar cell synapses generate transient versus sustained signals in parallel ON pathways of the mouse retina.

Journal: eLife

Status: data only, 1 dataset cited

[44] doi:10.1073/pnas.2528602122 [paper, repository]

Synaptic integration and competition in the substantia nigra pars reticulata-An experimental and in silico analysis.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: wstho/Snudda (GPL-3.0)

Status: code verified, 71 files readable

Saturday, 20 December 2025 (1 paper)

[45] doi:10.3390/ijms27010047 [paper, repository]

β<sub>2</sub>E153 Residue at Loop B of GABA<sub>A</sub>R Is Involved in Agonist Stabilization and Gating Properties.

Journal: International journal of molecular sciences

Authors' code: DCPROGS (no license), michal2am/bioscripts (no license)

Status: code verified, 200 files readable, 1 match

Wednesday, 17 December 2025 (1 paper)

[46] doi:10.1016/j.neuron.2025.11.005 [paper, repository]

Synchrony timescales underlie irregular neocortical spiking.

Journal: Neuron

Authors' code: figshare 30866516 (CC-BY-4.0)

Status: code verified, 14 files readable, 2 matches

Thursday, 11 December 2025 (1 paper)

[47] doi:10.1038/s41467-025-66157-1 [paper, repository]

Layer 5 myelination gates corticothalamic coincidence detection.

Journal: Nature communications

Authors' code: JorritMontijn/Acquipix (GPL-3.0), JorritMontijn/ZETA (GPL-3.0), modeldb:8115 (no license), Kolelab/Neuropixels_ephys_Jamann_2025 (MIT), Kolelab/long_range-NEURON-model (no license), imagej.net/plugins/bigstitcher (no license), imagej.net/plugins/snt (no license), napari.org/stable (no license)

Status: code verified, 255 files readable, 10 matches

Wednesday, 10 December 2025 (2 papers)

[48] doi:10.1523/eneuro.0065-25.2025 [paper, repository]

In Vivo Analysis of Medial Perforant Path-Evoked Excitation and Inhibition in Dentate Granule Cells.

Journal: eNeuro

Authors' code: IEECR/In-vivo-analysis-of-medial-perforant-path-evoked-excitation-and-inhibition-in-dentate-granule-cells (GPL-3.0)

Status: code verified, 46 files readable, 3 matches

[49] doi:10.1038/s41593-025-02134-7 [paper, repository]

Electrophysiological classification of human layer 2-3 pyramidal neurons reveals subtype-specific synaptic interactions.

Journal: Nature neuroscience

Authors' code: figshare 28184126 (GPL 3.0+)

Status: code verified, 119 files readable, 38 matches

Monday, 8 December 2025 (1 paper)

[50] doi:10.1371/journal.pcbi.1013748 [paper, repository]

Observing hidden neuronal states in experiments.

Journal: PLoS computational biology

Authors' code: serafimrodrigues/Amakhin-etal-2025 (MIT)

Status: code verified, 1,757 files readable, 3 matches

Saturday, 6 December 2025 (1 paper)

[51] doi:10.1186/s13071-025-07171-6 [paper, data]

Effects of emodepside on single-channel properties of Onchocerca volvulus SLO-1A (BK) potassium channels.

Journal: Parasites & vectors

Status: data only, 1 dataset cited

Monday, 1 December 2025 (2 papers)

[52] doi:10.1111/ejn.70375 [paper, repository]

Increase in Ia Afferent Synaptic Excitation of SOD1 G93A Mouse Motoneurons by 2-Week Anodal Trans-Spinal Direct Current Stimulation Does Not Ameliorate the Cellular Burden of the Disease.

Journal: The European journal of neuroscience

Authors' code: Zenodo 17513623 (CC-BY-4.0)

Status: code verified, 1 file readable

[53] doi:10.37796/2211-8039.1680 [paper, data]

Neuroprotection of paeoniflorin as antidepressant candidate.

Journal: BioMedicine

Status: data only, 1 dataset cited

Thursday, 27 November 2025 (1 paper)

[54] doi:10.1007/s12035-025-05379-2 [paper, repository]

Cellular and Extracellular MicroRNA Dysregulation in LRRK2-Linked Parkinson's Disease.

Journal: Molecular neurobiology

Authors' code: qbic-projects/smrnaseq (MIT)

Status: code verified, 6 files readable, 1 match

Monday, 24 November 2025 (1 paper)

[55] doi:10.7554/elife.95607 [paper, repository]

Generation of biophysical neuron model parameters from recorded electrophysiological responses.

Journal: eLife

Authors' code: shlizee/epgan (BSD-3-Clause)

Status: code verified, 8 files readable, 2 matches

Wednesday, 19 November 2025 (1 paper)

[56] doi:10.1016/j.xpro.2025.104217 [paper, data]

Protocol to study human Kv1.2 potassium channel pathogenic sequence variants using two-electrode voltage-clamp technique.

Journal: STAR protocols

Status: data only, 1 dataset cited

Monday, 10 November 2025 (1 paper)

[57] doi:10.1080/07853890.2025.2584694 [paper, data]

Mid-infrared photons relieve tinnitus-like behavior of mice by regulating HCN2 ion channels in the medial geniculate body.

Journal: Annals of medicine

Status: data only, 1 dataset cited

Friday, 7 November 2025 (1 paper)

[58] doi:10.1371/journal.pone.0335978 [paper, data]

Mechanistic insights into excitonic and electrostatic stimulation of cells by photovoltaic substrates/nanocrystals and through light polarization modulation.

Journal: PloS one

Status: data only, 1 dataset cited

Thursday, 6 November 2025 (1 paper)

[59] doi:10.1038/s41467-025-65919-1 [paper, repository]

The locking mechanism of human TRPV6 inhibition by intracellular magnesium.

Journal: Nature communications

Authors' code: Zenodo 17233354 (CC-BY-4.0)

Status: code verified

Thursday, 23 October 2025 (1 paper)

[60] doi:10.1038/s41467-025-64392-0 [paper, repository]

Structure-guided discovery of Otopetrin 1 inhibitors reveals druggable binding sites at the intrasubunit interface.

Journal: Nature communications

Authors' code: forlilab/molscrub (GPL-3.0), forlilab/Meeko (LGPL-2.1), ccsb-scripps/AutoDock-GPU (GPL-2.0), ccsb-scripps/autogrid (GPL-2.0), lmcinnes/umap (BSD-3-Clause), scikit-learn-contrib/hdbscan (BSD-3-Clause), whitead/molcloud (MIT)

Status: code verified, 337 files readable, 4 matches

Friday, 17 October 2025 (1 paper)

[61] doi:10.3791/69155 [paper, repository]

Dynamic Clamp Methods to Investigate Impaired Neuronal Excitability Associated with Autism.

Journal: Journal of visualized experiments : JoVE

Authors' code: morenomdphd/Resurgent_INa (no license)

Status: code verified, 17 files readable

Monday, 13 October 2025 (1 paper)

[62] doi:10.1242/jcs.264088 [paper, data]

The superficial tufted and mitral cell output neurons of the mouse olfactory bulb have dual roles in insulin sensing.

Journal: Journal of cell science

Status: data only, 1 dataset cited

Friday, 10 October 2025 (1 paper)

[63] doi:10.1016/j.dib.2025.112160 [paper, data]

Electrophysiological data showing the acute alcohol effect on neuronal excitability in the murine posterior parietal cortex.

Journal: Data in brief

Status: data only, 1 dataset cited

Tuesday, 7 October 2025 (1 paper)

[64] doi:10.7554/elife.97270 [paper, repository]

Distributed subthreshold representation of sharp wave-ripples by hilar mossy cells.

Journal: eLife

Authors' code: ohchako/DistributedSubthresholdRepresentationOfSharpWaveRipplesByHilarMossyCells (MIT)

Status: code verified, 24 files readable, 6 matches

Friday, 3 October 2025 (1 paper)

[65] doi:10.1073/pnas.2512294122 [paper, repository]

Overcoming the space clamp effect: Reliable recovery of local and effective synaptic conductances of neurons.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: vivian-wang-maker/conductance-measurement (no license)

Status: code verified, 58 files readable, 1 match

Tuesday, 30 September 2025 (1 paper)

[66] doi:10.7554/elife.106621 [paper, repository]

Sparse innervation and local heterogeneity in the vibrissal corticostriatal projection.

Journal: eLife

Authors' code: fr.mathworks.com/matlabcentral/fileexchange (no license)

Status: code found, still to be checked

Saturday, 27 September 2025 (1 paper)

[67] doi:10.1113/jp288183 [paper, repository]

'Mini analysis' misrepresents changes in synaptic properties due to incomplete event detection.

Journal: The Journal of physiology

Authors' code: biosig.sourceforge.net (no license), jakefwatson/miniplace (GPL-3.0)

Status: code verified, 9 files readable, 5 matches

Thursday, 25 September 2025 (1 paper)

[68] doi:10.1016/j.molpha.2025.100076 [paper, repository]

Electrophysiological characterization of the state-dependent inhibition of Kv7.1 and I<sub>Ks</sub> by UCL2077.

Journal: Molecular pharmacology

Authors' code: Zenodo 17448661 (CC-BY-4.0), danielsastrem/molecular-pharmacology-2025 (MIT)

Status: code verified, 12 files readable, 2 matches

Tuesday, 23 September 2025 (1 paper)

[69] doi:10.3390/ijms26199284 [paper, data]

Hypergravity Enhances Stretch Sensitivity in Rat Cardiomyocytes via Increased Expression and Activity of Stretch-Activated Channels.

Journal: International journal of molecular sciences

Status: data only, 1 dataset cited

Friday, 19 September 2025 (1 paper)

[70] doi:10.1038/s44319-025-00565-8 [paper]

The invasion pore induced by Toxoplasma gondii.

Journal: EMBO reports

Status: data only

Tuesday, 16 September 2025 (3 papers)

[71] doi:10.1073/pnas.2512278122 [paper, repository]

Φ value analysis underscores strong functional and structural compactness of the GABA<sub>A</sub> receptor.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: michal2am/bioscripts (no license)

Status: code verified, 200 files readable, 4 matches

[72] doi:10.1038/s41467-025-63949-3 [paper, repository]

Multicolor fate mapping of microglia reveals polyclonal proliferation, heterogeneity, and cell-cell interactions after ischemic stroke in mice.

Journal: Nature communications

Authors' code: OSF h9fjy (no license), kikhiam/kikhia_et_al_2025 (BSD-3-Clause), Zenodo 16891419 (BSD-3-Clause)

Status: code verified, 26 files readable, 7 matches

[73] doi:10.1016/j.celrep.2025.116309 [paper, data]

Impaired thalamic burst firing in fragile X syndrome.

Journal: Cell reports

Status: code on request, 1 dataset cited

Thursday, 11 September 2025 (2 papers)

[74] doi:10.1111/epi.18630 [paper, repository]

Potassium-chloride cotransporter 2 activity dampens induced ictal-like activity in neocortical slices containing the seizure propagation zone of temporal lobe epilepsy patients.

Journal: Epilepsia

Authors' code: Zenodo 15802113 (CC-BY-4.0)

Status: code verified

[75] doi:10.1016/j.brs.2025.09.004 [paper, repository]

Transcranial ultrasound stimulation modulates neuronal membrane potentials across broad timescales in the awake mammalian brain.

Journal: Brain stimulation

Authors' code: HanLabBU/TUS-Brain-Stimulation-2025 (no license)

Status: code verified, 7 files readable, 7 matches

Friday, 5 September 2025 (1 paper)

[76] doi:10.1016/j.celrep.2025.116219 [paper]

Adverse gestational environment configures a subpopulation of ventral dentate granule cells for recruitment to drive innate anxiety.

Journal: Cell reports

Status: code on request

Wednesday, 3 September 2025 (1 paper)

[77] doi:10.1523/jneurosci.0102-25.2025 [paper, repository]

Optical Recordings of Unitary Synaptic Connections Reveal High and Random Local Connectivity between CA3 Pyramidal Cells.

Journal: The Journal of neuroscience : the official journal of the Society for Neuroscience

Authors' code: repo.researchdata.hu/dataverse/szabadics_lab (no license)

Status: code verified

Monday, 1 September 2025 (1 paper)

[78] doi:10.3389/fncom.2025.1515194 [paper, repository]

Quantitative prediction of intracellular dynamics and synaptic currents in a small neural circuit.

Journal: Frontiers in computational neuroscience

Authors' code: thiagoburghi/rmm (MIT)

Status: code verified, 26 files readable, 8 matches

Friday, 22 August 2025 (1 paper)

[79] doi:10.1016/j.csbj.2025.08.024 [paper, repository]

Non-invasive maturity assessment of iPSC-CMs based on optical maturity characteristics using interpretable AI.

Journal: Computational and structural biotechnology journal

Authors' code: QuoData/Maia (BSD-3-Clause)

Status: code verified, 18 files readable, 4 matches

Thursday, 14 August 2025 (1 paper)

[80] doi:10.1073/pnas.2425172122 [paper, repository]

Atomistic mechanisms of calcium permeation modulated by Q/R editing and selectivity filter mutations in GluA2 AMPA receptors.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: AGPlested/GluA2-D590X-Mutants (no license)

Status: dead link

Tuesday, 12 August 2025 (1 paper)

[81] doi:10.1038/s41467-025-62805-8 [paper, data]

Lipid interactions and gating hysteresis suggest a physiological role for mechanosensitive channel YnaI.

Journal: Nature communications

Status: data only, 1 dataset cited

Monday, 11 August 2025 (1 paper)

[82] doi:10.1016/j.cell.2025.07.024 [paper, data]

Molecular and neural control of social hierarchy by a forebrain-thalamocortical circuit.

Journal: Cell

Status: data only, 1 dataset cited

Wednesday, 6 August 2025 (1 paper)

[83] doi:10.1126/sciadv.adx1680 [paper, data]

Atomistic mechanism of noncanonical voltage gating in K<sub>2P</sub> channels.

Journal: Science advances

Status: data only, 1 dataset cited

Thursday, 31 July 2025 (1 paper)

[84] doi:10.1113/jp287624 [paper, repository]

Mathematical model of the zebrafish ventricular cardiomyocyte action potential and calcium transient.

Journal: The Journal of physiology

Authors' code: jfrodrig1971/Zebrafish (no license)

Status: code verified

Monday, 7 July 2025 (1 paper)

[85] doi:10.1111/epi.18532 [paper, repository]

Medial septum parvalbumin-expressing inhibitory neurons are impaired in a mouse model of Dravet syndrome.

Journal: Epilepsia

Authors' code: mattis-laboratory/Slice-Physiology-Automated-Analysis (no license)

Status: code verified, 9 files readable, 4 matches

Tuesday, 1 July 2025 (3 papers)

[86] doi:10.1038/s41467-025-59150-1 [paper, repository]

Visualizing PIEZO1 localization and activity in hiPSC-derived single cells and organoids with HaloTag technology.

Journal: Nature communications

Authors' code: doi:10.5061/dryad.w6m905qwm (no license), Zenodo 15059239 (CC-BY-4.0), Zenodo 15048049 (CC-BY-4.0), pathak-lab/piezo1-localizationtools (MIT)

Status: code verified, 188 files readable, 1 match

[87] doi:10.1038/s41467-025-60837-8 [paper, repository]

Brainstem noradrenergic modulation of the kisspeptin neuron GnRH pulse generator in mice.

Journal: Nature communications

Authors' code: feszilvi/Fiber_photom (GPL-3.0), Zenodo 15320261 (GPL-3.0), Zenodo 7334481 (no license)

Status: code verified, 9 files readable, 1 match

[88] doi:10.1038/s42003-025-08431-y [paper, repository]

Direct excitatory loop and theta resonance in the anterior cingulate-mediodorsal thalamic circuit.

Journal: Communications biology

Authors' code: figshare 29362343 (CC0-1.0)

Status: code verified, 16 files readable, 2 matches

Monday, 30 June 2025 (1 paper)

[89] doi:10.1016/j.xpro.2025.103915 [paper, repository]

Protocol for generating and using human iPSC-derived microglia-containing air-liquid-interface cortical organoid cultures.

Journal: STAR protocols

Authors' code: junzhanj/HEKADatConverter (MIT)

Status: code verified, 6 files readable

Saturday, 28 June 2025 (1 paper)

[90] doi:10.1111/epi.18489 [paper, data]

Contribution of perineuronal nets to hyperexcitability in pilocarpine-induced status epilepticus.

Journal: Epilepsia

Status: data only, 1 dataset cited

Wednesday, 18 June 2025 (1 paper)

[91] doi:10.3389/fncel.2025.1598016 [paper, repository]

A novel method for reliably measuring miniature and spontaneous postsynaptic events in whole-cell patch clamp recordings in the central nervous system.

Journal: Frontiers in cellular neuroscience

Authors' code: gin.g-node.org/dervinism/minis-benchmarking-data2 (no license), dervinism/minis-benchmarking (GPL-3.0), dervinism/minis (no license)

Status: code verified, 177 files readable, 19 matches

Friday, 6 June 2025 (1 paper)

[92] doi:10.1002/advs.202500691 [paper, repository]

Resolving Artifacts in Voltage-Clamp Experiments with Computational Modeling: An Application to Fast Sodium Current Recordings.

Journal: Advanced science (Weinheim, Baden-Wurttemberg, Germany)

Authors' code: CardiacModelling/nav-artefact-model (BSD-3-Clause), Zenodo 15200038 (BSD-3-Clause)

Status: code verified, 60 files readable, 2 matches

Thursday, 5 June 2025 (1 paper)

[93] doi:10.21769/bioprotoc.5338 [paper, repository]

Local Iontophoretic Application for Pharmacological Induction of Long-Term Synaptic Depression.

Journal: Bio-protocol

Authors' code: wisstock/domb-napari (MIT), Zenodo 14843771 (MIT)

Status: code verified, 13 files readable, 7 matches

Tuesday, 3 June 2025 (1 paper)

[94] doi:10.1016/j.celrep.2025.115768 [paper, repository]

Vasopressin and oxytocin excite BNST neurons via oxytocin receptors, which reduce anxious arousal.

Journal: Cell reports

Authors' code: Zenodo 15238413 (CC-BY-4.0), nsdesai/patch_clamp_analysis (no license)

Status: code verified, 36 files readable, 4 matches

Saturday, 3 May 2025 (1 paper)

[95] doi:10.1186/s13024-025-00840-1 [paper, repository]

Alzheimer's disease protective allele of Clusterin modulates neuronal excitability through lipid-droplet-mediated neuron-glia communication.

Journal: Molecular neurodegeneration

Authors' code: Zenodo 11568090 (CC-BY-4.0)

Status: code verified, 11 files readable, 4 matches

Tuesday, 29 April 2025 (1 paper)

[96] doi:10.1073/pnas.2421900122 [paper]

Calcium-activated chloride channel TMEM16A opens via pi-helical transition in transmembrane segment 4.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: code on request

Thursday, 24 April 2025 (1 paper)

[97] doi:10.7554/elife.93781 [paper, repository]

Accelerated signal propagation speed in human neocortical dendrites.

Journal: eLife

Authors' code: GasparOlah/Analysis_scripts_for_Accelerated-signal-propagation-speed-in-human-neocortical-dendrites (no license), ssapir/AcceleratedSignalPaper (no license)

Status: code verified, 79 files readable, 2 matches

Wednesday, 9 April 2025 (1 paper)

[98] doi:10.1371/journal.pcbi.1012918 [paper, repository]

Multiple patterns of persistent inward currents with multiple types of repetitive firings in medullary serotonergic neurons of mice: An experimental and modeling study.

Journal: PLoS computational biology

Authors' code: Cheng-ECNU/5-HT-model-PIC (GPL-3.0)

Status: code verified, 38 files readable

Friday, 4 April 2025 (1 paper)

[99] doi:10.1038/s41467-025-58013-z [paper, repository]

Ex vivo cortical circuits learn to predict and spontaneously replay temporal patterns.

Journal: Nature communications

Authors' code: OSF qspnv (no license)

Status: code verified

Tuesday, 1 April 2025 (3 papers)

[100] doi:10.1113/jp287286 [paper, data]

Neuron-non-neuron electrical coupling networks are involved in chronic stress-induced electrophysiological changes in lateral habenular neurons.

Journal: The Journal of physiology

Status: data only, 1 dataset cited

[101] doi:10.1016/j.ebiom.2025.105648 [paper, data]

The severity of SLC1A2-associated neurodevelopmental disorders correlates with transporter dysfunction.

Journal: EBioMedicine

Status: data only, 2 datasets cited

[102] doi:10.1093/cercor/bhaf073 [paper, repository]

Information transfer and recovery for the sense of touch.

Journal: Cerebral cortex (New York, N.Y. : 1991)

Authors' code: DepartmentofNeurophysiology/Information-transfer-and-recovery-for-sense-of-touch-code-for-figures (CC0-1.0), DepartmentofNeurophysiology/Cortical-representation-of-touch-in-silico (no license)

Status: code verified, 98 files readable, 3 matches

Wednesday, 26 March 2025 (1 paper)

[103] doi:10.1093/braincomms/fcaf124 [paper, repository]

Absence of GluN2A in hippocampal CA1 neurons leads to altered dendritic structure and reduced frequency of miniature excitatory synaptic events.

Journal: Brain communications

Authors' code: adj-4/intrinsicanalysis (no license)

Status: code verified, 12 files readable

Tuesday, 25 March 2025 (1 paper)

[104] doi:10.1152/jn.00052.2025 [paper, repository]

Distinct firing responses to synthetic synaptic currents in the adult murine reticular and relay thalamus.

Journal: Journal of neurophysiology

Authors' code: Zenodo 13942488 (CC-BY-4.0)

Status: code verified

Thursday, 20 March 2025 (1 paper)

[105] doi:10.1038/s41467-025-58034-8 [paper, repository]

Location-specific neural facilitation in marmoset auditory cortex.

Journal: Nature communications

Authors' code: ccg1988/LSF_Nature_Communications_2024 (no license), Zenodo 14737013 (CC-BY-4.0), ccg1988/lsf_nature_communications_2025 (no license)

Status: code verified, 74 files readable, 9 matches

Wednesday, 19 March 2025 (1 paper)

[106] doi:10.1038/s44319-025-00404-w [paper, data]

SERTM2: a neuroactive player in the world of micropeptides.

Journal: EMBO reports

Status: data only, 2 datasets cited

Tuesday, 18 March 2025 (1 paper)

[107] doi:10.1007/s12021-025-09721-w [paper, repository]

Efficient, Automatic, and Reproducible Patch Clamp Data Analysis with "Auto ANT", a User-Friendly Interface for Batch Analysis of Patch Clamp Recordings.

Journal: Neuroinformatics

Authors' code: Auto-ANT/Auto-ANT (no license)

Status: code verified, 15 files readable, 10 matches

Thursday, 13 March 2025 (1 paper)

[108] doi:10.1098/rsta.2024.0211 [paper, repository]

Evaluating the predictive accuracy of ion-channel models using data from multiple experimental designs.

Journal: Philosophical transactions. Series A, Mathematical, physical, and engineering sciences

Authors' code: Zenodo 14536882 (BSD-3-Clause)

Status: code verified, 13 files readable, 1 match

Tuesday, 4 March 2025 (1 paper)

[109] doi:10.1007/s00018-025-05629-5 [paper, data]

NEIL3 influences adult neurogenesis and behavioral pattern separation via WNT signaling.

Journal: Cellular and molecular life sciences : CMLS

Status: data only, 1 dataset cited

Tuesday, 25 February 2025 (1 paper)

[110] doi:10.1097/j.pain.0000000000003512 [paper, repository]

Modelling inflammation-induced peripheral sensitization in a dish-more complex than expected?

Journal: Pain

Authors' code: Zenodo 12783430 (CC-BY-4.0), Zenodo 13122856 (CC-BY-4.0)

Status: code verified, 1 file readable

Tuesday, 18 February 2025 (1 paper)

[111] doi:10.1038/s41467-025-56998-1 [paper, data]

Neuronal hyperactivity in neurons derived from individuals with gray matter heterotopia.

Journal: Nature communications

Status: data only, 1 dataset cited

Monday, 10 February 2025 (1 paper)

[112] doi:10.1186/s12974-025-03353-2 [paper, data]

Inflammatory responses revealed through HIV infection of microglia-containing cerebral organoids.

Journal: Journal of neuroinflammation

Status: data only, 1 dataset cited

Monday, 3 February 2025 (1 paper)

[113] doi:10.7554/elife.87078 [paper, repository]

Live imaging of excitable axonal microdomains in ankyrin-G-GFP mice.

Journal: eLife

Authors' code: Zenodo 4264831 (other-open)

Status: code verified, 92 files readable

Tuesday, 14 January 2025 (2 papers)

[114] doi:10.1038/s41467-024-55571-6 [paper, repository]

Intelligent in-cell electrophysiology: Reconstructing intracellular action potentials using a physics-informed deep learning model trained on nanoelectrode array recordings.

Journal: Nature communications

Authors' code: Bionelab/Reconstructing-intracellular-action-potentials-from-cardiac-extracellular-waveforms (MIT)

Status: code verified, 18 files readable, 3 matches

[115] doi:10.1186/s12920-025-02084-w [paper, repository]

Evaluation of a biomarker for amyotrophic lateral sclerosis derived from a hypomethylated DNA signature of human motor neurons.

Journal: BMC medical genomics

Authors' code: broadinstitute/ABC-Enhancer-Gene-Prediction (MIT), bulik/ldsc (GPL-3.0)

Status: code verified, 51 files readable, 3 matches

Friday, 10 January 2025 (1 paper)

[116] doi:10.1016/j.bpr.2025.100196 [paper, data]

Toward measurements of absolute membrane potential in Bacillus subtilis using fluorescence lifetime.

Journal: Biophysical reports

Status: data only, 1 dataset cited

Monday, 6 January 2025 (1 paper)

[117] doi:10.3389/fcell.2024.1518533 [paper, data]

Altered cytoskeleton dynamics in patient-derived iPSC-based model of PCDH19 clustering epilepsy.

Journal: Frontiers in cell and developmental biology

Status: data only, 1 dataset cited

Wednesday, 1 January 2025 (1 paper)

[118] doi:10.1111/jnc.70004 [paper]

GABA<sub>B</sub> Receptor Modulation of Membrane Excitability in Human Pluripotent Stem Cell-Derived Sensory Neurons by Baclofen and α-Conotoxin Vc1.1.

Journal: Journal of neurochemistry

Status: data only

Thursday, 12 December 2024 (1 paper)

[119] doi:10.1038/s41467-024-53901-2 [paper, repository]

Membrane potential states gate synaptic consolidation in human neocortical tissue.

Journal: Nature communications

Authors' code: figshare 24793218 (CC-BY-4.0)

Status: code verified, 22 files readable, 10 matches

Monday, 2 December 2024 (1 paper)

[120] doi:10.1371/journal.pbio.3002929 [paper, repository]

Axons compensate for biophysical constraints of variable size to uniformize their action potentials.

Journal: PLoS biology

Authors' code: Zenodo 13977231 (CC-BY-4.0), brunnerjanos/axonal-ap (MIT), repo.researchdata.hu/dataset.xhtml (no license)

Status: code verified, 2 files readable

Thursday, 21 November 2024 (1 paper)

[121] doi:10.1073/pnas.2414038121 [paper, data]

Lateral entorhinal cortex afferents reconfigure the activity in piriform cortex circuits.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 1 dataset cited

Monday, 18 November 2024 (2 papers)

[122] doi:10.7554/elife.97399 [paper, repository]

Patch-walking, a coordinated multi-pipette patch clamp for efficiently finding synaptic connections.

Journal: eLife

Authors' code: autopatcher.org (no license), mightenyip/Pipette-Cleaning-Software (MIT)

Status: code verified, 2 files readable

[123] doi:10.1038/s41598-024-79856-4 [paper, data]

A low-cost perfusion heating system for slice electrophysiology.

Journal: Scientific reports

Status: data only, 1 dataset cited

Friday, 15 November 2024 (1 paper)

[124] doi:10.1038/s41467-024-54053-z [paper, data]

Membrane lipid nanodomains modulate HCN pacemaker channels in nociceptor DRG neurons.

Journal: Nature communications

Status: data only, 1 dataset cited

Thursday, 7 November 2024 (1 paper)

[125] doi:10.1016/j.xpro.2024.103406 [paper, repository]

Protocol to study electrophysiological properties of hPSC-derived 3D cardiac organoids using MEA and sharp electrode techniques.

Journal: STAR protocols

Authors' code: axionbio/AxionFileLoader (MIT)

Status: code verified, 50 files readable

Saturday, 2 November 2024 (1 paper)

[126] doi:10.1007/s43440-024-00674-6 [paper, data]

Activation of 5-HT₇ receptors in the mouse dentate gyrus does not affect theta-burst-induced plasticity at the perforant path synapse.

Journal: Pharmacological reports : PR

Status: data only, 1 dataset cited

Friday, 1 November 2024 (2 papers)

[127] doi:10.7554/elife.92854 [paper, repository]

Synaptic interactions between stellate cells and parvalbumin interneurons in layer 2 of the medial entorhinal cortex are organized at the scale of grid cell clusters.

Journal: eLife

Authors' code: datashare.ed.ac.uk/handle/10283 (no license)

Status: code verified

[128] doi:10.1002/cne.70001 [paper, repository]

Comparative Physiology and Morphology of BLA-Projecting NBM/SI Cholinergic Neurons in Mouse and Macaque.

Journal: The Journal of comparative neurology

Authors' code: Zenodo 10975327 (CC-BY-4.0), nsdesai/patch_clamp_analysis (no license)

Status: code verified, 33 files readable, 3 matches

Thursday, 31 October 2024 (1 paper)

[129] doi:10.1186/s12888-024-06127-x [paper, data]

Patient iPSC-derived neural progenitor cells display aberrant cell cycle control, p53, and DNA damage response protein expression in schizophrenia.

Journal: BMC psychiatry

Status: data only, 3 datasets cited

Monday, 28 October 2024 (1 paper)

[130] doi:10.1073/pnas.2403325121 [paper, repository]

Learning-dependent gating of hippocampal inputs by frontal interneurons.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: neurodroid/haussmeister (no license), neurodroid/ZH2024 (no license), Zenodo 13940195 (CC-BY-4.0), Zenodo 13940218 (CC-BY-4.0)

Status: code verified, 42 files readable, 3 matches

Monday, 7 October 2024 (1 paper)

[131] doi:10.1371/journal.pcbi.1012475 [paper, repository]

Reverse-engineered models reveal differential membrane properties of autonomic and cutaneous unmyelinated fibers.

Journal: PLoS computational biology

Authors' code: gitlab.oit.duke.edu/bjt20/thio_cfiber (other)

Status: code verified, 138 files readable, 4 matches

Thursday, 3 October 2024 (1 paper)

[132] doi:10.1523/eneuro.0248-24.2024 [paper, repository]

Machine Learning Elucidates Electrophysiological Properties Predictive of Multi- and Single-Firing Human and Mouse Dorsal Root Ganglia Neurons.

Journal: eNeuro

Authors' code: PainLabUNM/Zurek_et_al_eNeuro_2024 (no license)

Status: code verified, 5 files readable, 2 matches

Saturday, 28 September 2024 (1 paper)

[133] doi:10.1038/s41467-024-52539-4 [paper, data]

Structural basis for the rescue of hyperexcitable cells by the amyotrophic lateral sclerosis drug Riluzole.

Journal: Nature communications

Status: data only, 1 dataset cited

Wednesday, 4 September 2024 (1 paper)

[134] doi:10.1016/j.crmeth.2024.100845 [paper, data]

3D model for human glia conversion into subtype-specific neurons, including dopamine neurons.

Journal: Cell reports methods

Status: code on request, 1 dataset cited

Wednesday, 28 August 2024 (1 paper)

[135] doi:10.1126/sciadv.adj2547 [paper, repository]

Cl<sup>-</sup>-dependent amplification of excitatory synaptic potentials at distal dendrites revealed by voltage imaging.

Journal: Science advances

Authors' code: nb.biophys.kyoto-u.ac.jp/model (no license), supp:PMC11352850/sciadv.adj2547_supplementary_code.zip (no license)

Status: code verified, 16 files readable, 3 matches

Monday, 26 August 2024 (1 paper)

[136] doi:10.1371/journal.pbio.3002660 [paper, data]

Fast-spiking interneuron detonation drives high-fidelity inhibition in the olfactory bulb.

Journal: PLoS biology

Status: data only, 1 dataset cited

Tuesday, 6 August 2024 (2 papers)

[137] doi:10.1038/s41467-024-51065-7 [paper, repository]

Net synaptic drive of fast-spiking interneurons is inverted towards inhibition in human FCD I epilepsy.

Journal: Nature communications

Authors' code: flosfor/pvbs (GPL-3.0), BSP-Uniandes/RIPPLELAB (GPL-2.0)

Status: code verified, 1,475 files readable, 2 matches

[138] doi:10.1038/s41598-024-65866-9 [paper, repository]

Demonstration that sublinear dendrites enable linearly non-separable computations.

Journal: Scientific reports

Authors' code: Zenodo 7875425 (CC-BY-4.0)

Status: code verified, 1 file readable

Wednesday, 31 July 2024 (1 paper)

[139] doi:10.1371/journal.pcbi.1011728 [paper, data]

Multitask learning of a biophysically-detailed neuron model.

Journal: PLoS computational biology

Status: data only, 1 dataset cited

Monday, 29 July 2024 (1 paper)

[140] doi:10.1523/eneuro.0203-24.2024 [paper, repository]

Impact of Unitary Synaptic Inhibition on Spike Timing in Ventral Tegmental Area Dopamine Neurons.

Journal: eNeuro

Authors' code: higgsm/unitary-ipsc (no license)

Status: code verified, 10 files readable, 10 matches

Friday, 26 July 2024 (1 paper)

[141] doi:10.1038/s41467-024-50546-z [paper, repository]

Functional architecture of intracellular oscillations in hippocampal dendrites.

Journal: Nature communications

Authors' code: Zenodo 11215569 (CC-BY-4.0)

Status: code verified

Sunday, 14 July 2024 (1 paper)

[142] doi:10.1007/s00018-024-05312-1 [paper, data]

A versatile functional interaction between electrically silent K_V subunits and K_V7 potassium channels.

Journal: Cellular and molecular life sciences : CMLS

Status: data only, 1 dataset cited

Thursday, 11 July 2024 (1 paper)

[143] doi:10.7554/elife.93498 [paper, repository]

Clustered synapses develop in distinct dendritic domains in visual cortex before eye opening.

Journal: eLife

Authors' code: figshare 22674748 (CC-BY-4.0)

Status: code verified, 37 files readable, 7 matches

Tuesday, 9 July 2024 (1 paper)

[144] doi:10.1038/s41467-024-49339-1 [paper, repository]

Structured connectivity in the output of the cerebellar cortex.

Journal: Nature communications

Authors' code: Zenodo 11090249 (CC-BY-4.0), kgruver/StructuredConnectivity (CC0-1.0)

Status: code verified, 24 files readable, 3 matches

Tuesday, 2 July 2024 (1 paper)

[145] doi:10.1097/j.pain.0000000000003315 [paper, repository]

A cellular mechanism contributing to pain-induced analgesia.

Journal: Pain

Authors' code: nevian_group_unibe/in-vitro-ephys (no license)

Status: code verified, 53 files readable, 2 matches

Monday, 1 July 2024 (1 paper)

[146] doi:10.1016/j.ynpai.2024.100166 [paper, repository]

Induction of long-term hyperexcitability by memory-related cAMP signaling in isolated nociceptor cell bodies.

Journal: Neurobiology of pain (Cambridge, Mass.)

Authors' code: rmcassidy/FIBSI_program (BSD-3-Clause)

Status: code verified, 8 files readable

Friday, 28 June 2024 (1 paper)

[147] doi:10.7554/elife.90278 [paper, data]

Serotonergic and dopaminergic neurons in the dorsal raphe are differentially altered in a mouse model for parkinsonism.

Journal: eLife

Status: data only, 3 datasets cited

Tuesday, 18 June 2024 (2 papers)

[148] doi:10.1038/s41467-024-49396-6 [paper, repository]

PIP<sub>2</sub> modulates TRPC3 activity via TRP helix and S4-S5 linker.

Journal: Nature communications

Authors' code: medunigraz/scana (GPL-3.0), Zenodo 11203604 (CC-BY-4.0)

Status: code verified, 18 files readable, 1 match

[149] doi:10.1038/s42003-024-06359-3 [paper, repository]

Membrane depolarization mediates both the inhibition of neural activity and cell-type-differences in response to high-frequency stimulation.

Journal: Communications biology

Authors' code: OSF hnpq4 (no license)

Status: code verified, 6 files readable, 1 match

Friday, 14 June 2024 (1 paper)

[150] doi:10.1038/s41467-024-49192-2 [paper, repository]

Scanless two-photon voltage imaging.

Journal: Nature communications

Authors' code: Zenodo 11507381 (CC-BY-4.0)

Status: code verified, 1 file readable

Thursday, 13 June 2024 (1 paper)

[151] doi:10.1038/s41593-024-01676-6 [paper, data]

Fear learning induces synaptic potentiation between engram neurons in the rat lateral amygdala.

Journal: Nature neuroscience

Status: data only, 2 datasets cited

Wednesday, 12 June 2024 (1 paper)

[152] doi:10.1093/pnasnexus/pgae234 [paper, data]

A leak K⁺ channel TWK-40 sustains the rhythmic motor program.

Journal: PNAS nexus

Status: data only, 1 dataset cited

Tuesday, 11 June 2024 (1 paper)

[153] doi:10.1085/jgp.202313484 [paper, repository]

Fusion pore flux controls the rise-times of quantal synaptic responses.

Journal: The Journal of general physiology

Authors' code: meyerjackson/minis-jgp-2024 (no license)

Status: code verified, 2 files readable, 1 match

Monday, 10 June 2024 (1 paper)

[154] doi:10.1098/rstb.2023.0475 [paper, repository]

Cortical nitric oxide required for presynaptic long-term potentiation in the insular cortex.

Journal: Philosophical transactions of the Royal Society of London. Series B, Biological sciences

Authors' code: doi:10.6084/m9.figshare.c.7202785 (no license)

Status: code found, still to be checked

Thursday, 6 June 2024 (1 paper)

[155] doi:10.1016/j.crmeth.2024.100791 [paper, repository]

ElecFeX is a user-friendly toolbox for efficient feature extraction from single-cell electrophysiological recordings.

Journal: Cell reports methods

Authors' code: XinyueMa-neuro/ElecFeX (GPL-3.0), XinyueMa-neuro/ElecFeX-MaEtAl2024 (CC-BY-4.0)

Status: code verified, 10 files readable, 5 matches

Tuesday, 4 June 2024 (1 paper)

[156] doi:10.1016/j.neuron.2024.05.009 [paper, repository]

Cell-class-specific electric field entrainment of neural activity.

Journal: Neuron

Authors' code: anastassiou-team/celltype_brainstim_invitro (no license), anastassiou-team/celltype_brainstim_insilico (no license), AllenInstitute/MIES (BSD-2-Clause), Zenodo 11111558 (CC-BY-4.0), Zenodo 11111563 (CC-BY-4.0)

Status: code verified, 4,058 files readable, 1 match

Monday, 6 May 2024 (1 paper)

[157] doi:10.1371/journal.pcbi.1012053 [paper, repository]

Removing direct photocurrent artifacts in optogenetic connectivity mapping data via constrained matrix factorization.

Journal: PLoS computational biology

Authors' code: bantin/PhoRC (no license)

Status: code verified, 51 files readable, 6 matches

Monday, 29 April 2024 (1 paper)

[158] doi:10.1371/journal.pcbi.1011964 [paper, repository]

Ensemble learning and ground-truth validation of synaptic connectivity inferred from spike trains.

Journal: PLoS computational biology

Authors' code: christiando/spycon (MIT), renkulab.io/projects/christian.donner (no license)

Status: code verified, 26 files readable, 4 matches

Monday, 11 March 2024 (1 paper)

[159] doi:10.1007/s12311-024-01682-1 [paper, repository]

The Effect of Nucleo-Olivary Stimulation on Climbing Fiber EPSPs in Purkinje Cells.

Journal: Cerebellum (London, England)

Authors' code: rasmussenanders/CFR (no license)

Status: code verified, 1 file readable, 1 match

Tuesday, 27 February 2024 (1 paper)

[160] doi:10.1016/j.bpj.2024.02.025 [paper, repository]

SanPy: Software for the analysis and visualization of whole-cell current-clamp recordings.

Journal: Biophysical journal

Authors' code: cudmore/sanpy (GPL-3.0), Zenodo 7931648 (other-open)

Status: code verified, 223 files readable, 10 matches

Friday, 23 February 2024 (1 paper)

[161] doi:10.1016/j.jbc.2024.105785 [paper, repository]

The small molecule activator S3969 stimulates the epithelial sodium channel by interacting with a specific binding pocket in the channel's β-subunit.

Journal: The Journal of biological chemistry

Authors' code: f-sure/minimal-distance-MD (no license)

Status: code verified, 3 files readable, 1 match

Friday, 2 February 2024 (1 paper)

[162] doi:10.1016/j.jbc.2024.105717 [paper, repository]

Recovery from desensitization in GluA2 AMPA receptors is affected by a single mutation in the N-terminal domain interface.

Journal: The Journal of biological chemistry

Authors' code: andreashlarsen/Larsen2024-GluA2 (no license)

Status: code verified, 22 files readable, 5 matches

Wednesday, 31 January 2024 (1 paper)

[163] doi:10.1073/pnas.2315804121 [paper, repository]

Detecting unitary synaptic events with machine learning.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: mrreganwang/Mini_Scripts (no license)

Status: code verified, 22 files readable, 8 matches

Monday, 11 December 2023 (1 paper)

[164] doi:10.1016/j.crmeth.2023.100671 [paper, repository]

Opto-electronic feedback control of membrane potential for real-time control of action potentials.

Journal: Cell reports methods

Authors' code: Zenodo 10116142 (GPL-3.0)

Status: code verified

Friday, 27 October 2023 (1 paper)

[165] doi:10.1523/eneuro.0250-23.2023 [paper, repository]

Reciprocal Connections between Parvalbumin-Expressing Cells and Adjacent Pyramidal Cells Are Regulated by Clustered Protocadherin γ.

Journal: eNeuro

Authors' code: scicrunch.org/resolver/scr_001622 (no license)

Status: code found, still to be checked

Wednesday, 18 October 2023 (1 paper)

[166] doi:10.3390/ijms242015313 [paper, data]

Expression Pattern of Trace Amine-Associated Receptors during Differentiation of Human Pluripotent Stem Cells to Dopaminergic Neurons.

Journal: International journal of molecular sciences

Status: data only, 1 dataset cited

Wednesday, 19 July 2023 (1 paper)

[167] doi:10.1038/s41586-023-06357-1 [paper, repository]

A cell-type-specific error-correction signal in the posterior parietal cortex.

Journal: Nature

Authors' code: HarveyLab/Acquisition2P_class (MIT), HarveyLab/mouseVR (MIT)

Status: code verified, 159 files readable, 1 match

Thursday, 13 July 2023 (1 paper)

[168] doi:10.3389/fncel.2023.1153970 [paper, repository]

Different resting membrane potentials in posterior parietal cortex and prefrontal cortex in the view of recurrent synaptic strengths and neural network dynamics.

Journal: Frontiers in cellular neuroscience

Authors' code: EPFL-LCN/neuronaldynamics-exercises (GPL-2.0)

Status: code verified, 61 files readable, 5 matches

Wednesday, 5 July 2023 (1 paper)

[169] doi:10.7554/elife.84387 [paper, repository]

Cholinergic modulation shifts the response of CA1 pyramidal cells to depolarizing ramps via TRPM4 channels with potential implications for place field firing.

Journal: eLife

Authors' code: modeldb:267599 (no license)

Status: code verified

Monday, 26 June 2023 (1 paper)

[170] doi:10.1038/s41467-023-39497-z [paper, repository]

Striatal cholinergic interneuron membrane voltage tracks locomotor rhythms in mice.

Journal: Nature communications

Authors' code: HanLabBU/Shroff-Lowet-Nature-Communication-2023 (MIT), Zenodo 7805663 (other-open)

Status: code verified, 45 files readable, 4 matches

Tuesday, 13 June 2023 (1 paper)

[171] doi:10.1371/journal.pone.0287174 [paper, data]

Membrane potential dynamics of excitatory and inhibitory neurons in mouse barrel cortex during active whisker sensing.

Journal: PloS one

Status: data only, 2 datasets cited

Saturday, 3 June 2023 (1 paper)

[172] doi:10.1016/j.xpro.2023.102345 [paper]

Protocol to prepare mouse spinal cord for patch-clamp and histology experiments.

Journal: STAR protocols

Status: code on request

Friday, 12 May 2023 (1 paper)

[173] doi:10.3390/ijms24108704 [paper, data]

Differential Functional Contribution of BK Channel Subunits to Aldosterone-Induced Channel Activation in Vascular Smooth Muscle and Eventual Cerebral Artery Dilation.

Journal: International journal of molecular sciences

Status: data only, 1 dataset cited

Monday, 17 April 2023 (3 papers)

[174] doi:10.1371/journal.pcbi.1011046 [paper, repository]

How synaptic strength, short-term plasticity, and input synchrony contribute to neuronal spike output.

Journal: PLoS computational biology

Authors' code: gschuhknecht/Buchholz_GastoneGuilabert_2023 (no license)

Status: code verified, 13 files readable, 6 matches

[175] doi:10.1186/s12915-023-01559-5 [paper, data]

The retinal pigment epithelium displays electrical excitability and lateral signal spreading.

Journal: BMC biology

Status: data only, 2 datasets cited

[176] doi:10.1016/j.cell.2023.03.025 [paper, repository]

Pyramidal neurons form active, transient, multilayered circuits perturbed by autism-associated mutations at the inception of neocortex.

Journal: Cell

Authors' code: Zenodo 7689306 (CC-BY-4.0), Zenodo 7689305 (CC-BY-4.0)

Status: code verified, 108 files readable, 20 matches

Thursday, 13 April 2023 (1 paper)

[177] doi:10.1016/j.celrep.2023.112394 [paper]

A plasma membrane-associated glycolytic metabolon is functionally coupled to K<sub>ATP</sub> channels in pancreatic α and β cells from humans and mice.

Journal: Cell reports

Status: code on request

Wednesday, 22 March 2023 (1 paper)

[178] doi:10.1152/jn.00029.2022 [paper, repository]

Developmental changes in electrophysiological properties of auditory cortical neurons in the <i>Cntnap2</i> knockout rat.

Journal: Journal of neurophysiology

Authors' code: AllenInstitute/ipfx (BSD-2-Clause)

Status: code verified, 144 files readable, 4 matches

Wednesday, 8 March 2023 (1 paper)

[179] doi:10.3389/fsysb.2023.1122433 [paper, repository]

Distinct mechanisms underlie electrical coupling resonance and its interaction with membrane potential resonance.

Journal: Frontiers in systems biology

Authors' code: fnadim/ECouplingResonance (no license)

Status: empty repository

Sunday, 5 March 2023 (1 paper)

[180] doi:10.1016/j.jneumeth.2023.109827 [paper, repository]

A cranial implant for stabilizing whole-cell patch-clamp recordings in behaving rodents.

Journal: Journal of neuroscience methods

Authors' code: losonczylab/sima (GPL-2.0)

Status: code verified, 55 files readable

Monday, 27 February 2023 (1 paper)

[181] doi:10.3389/fphar.2023.1138556 [paper, data]

Kv7-specific activators hyperpolarize resting membrane potential and modulate human iPSC-derived sensory neuron excitability.

Journal: Frontiers in pharmacology

Status: data only, 1 dataset cited

Wednesday, 1 February 2023 (1 paper)

[182] doi:10.1093/cercor/bhac195 [paper, data]

Differential effects of group III metabotropic glutamate receptors on spontaneous inhibitory synaptic currents in spine-innervating double bouquet and parvalbumin-expressing dendrite-targeting GABAergic interneurons in human neocortex.

Journal: Cerebral cortex (New York, N.Y. : 1991)

Status: data only, 1 dataset cited

Thursday, 12 January 2023 (1 paper)

[183] doi:10.1016/j.crmeth.2022.100385 [paper, repository]

High-throughput combined voltage-clamp/current-clamp analysis of freshly isolated neurons.

Journal: Cell reports methods

Authors' code: emrekiziltug3/AutomatedClampAnalysis (no license), Zenodo 7411103 (other-open)

Status: code verified, 2 files readable

Tuesday, 10 January 2023 (1 paper)

[184] doi:10.1016/j.redox.2023.102604 [paper, data]

Chemogenetic emulation of intraneuronal oxidative stress affects synaptic plasticity.

Journal: Redox biology

Status: data only, 1 dataset cited

Thursday, 5 January 2023 (2 papers)

[185] doi:10.1016/j.celrep.2022.111943 [paper]

Electrical signals in the ER are cell type and stimulus specific with extreme spatial compartmentalization in neurons.

Journal: Cell reports

Status: code on request

[186] doi:10.3389/fcell.2022.1023340 [paper, repository]

Differentiation of human induced pluripotent stem cells into cortical neural stem cells.

Journal: Frontiers in cell and developmental biology

Authors' code: wtsi-hgi/nextflow-pipelines (no license)

Status: code verified, 42 files readable, 1 match

Wednesday, 4 January 2023 (1 paper)

[187] doi:10.3389/fncel.2022.1060189 [paper, data]

Neurotransmitter content heterogeneity within an interneuron class shapes inhibitory transmission at a central synapse.

Journal: Frontiers in cellular neuroscience

Status: data only, 1 dataset cited

Tuesday, 20 December 2022 (1 paper)

[188] doi:10.1016/j.xpro.2022.101963 [paper]

In vivo whole-cell recording from morphologically identified mouse superior colliculus neurons.

Journal: STAR protocols

Status: code on request

Monday, 19 December 2022 (1 paper)

[189] doi:10.1073/pnas.2202962119 [paper, repository]

Heterogeneous stochastic bifurcations explain intrinsic oscillatory patterns in entorhinal cortical stellate cells.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: Zenodo 7413666 (CC-BY-4.0), Zenodo 7413665 (CC-BY-4.0)

Status: code verified, 70 files readable, 2 matches

Thursday, 1 December 2022 (1 paper)

[190] doi:10.1016/j.celrep.2022.111757 [paper, repository]

Circuit-selective cell-autonomous regulation of inhibition in pyramidal neurons by Ste20-like kinase.

Journal: Cell reports

Authors' code: pedroxroyero/Patch-Seq-analysis-SLK-KD (no license)

Status: code verified, 6 files readable, 11 matches

Tuesday, 1 November 2022 (1 paper)

[191] doi:10.1093/gigascience/giac108 [paper, repository]

An in vitro whole-cell electrophysiology dataset of human cortical neurons.

Journal: GigaScience

Authors' code: derekhoward/nwb_conversion (MIT)

Status: code verified, 14 files readable, 11 matches

Saturday, 29 October 2022 (1 paper)

[192] doi:10.3390/ijms232113190 [paper, repository]

GDNF Increases Inhibitory Synaptic Drive on Principal Neurons in the Hippocampus via Activation of the Ret Pathway.

Journal: International journal of molecular sciences

Authors' code: AMikroulis/xPSC-detection (AGPL-3.0), AMikroulis/staining-analysis (GPL-3.0)

Status: code verified, 6 files readable, 2 matches

Friday, 28 October 2022 (1 paper)

[193] doi:10.3390/ijms232113080 [paper, data]

Depleted Calcium Stores and Increased Calcium Entry in Rod Photoreceptors of the <i>Cacna2d4</i> Mouse Model of Cone-Rod Dystrophy RCD4.

Journal: International journal of molecular sciences

Status: data only, 1 dataset cited

Monday, 24 October 2022 (1 paper)

[194] doi:10.1073/pnas.2203748119 [paper, repository]

Mammalian octopus cells are direction selective to frequency sweeps by excitatory synaptic sequence detection.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: hsinweilu/Lu2022 (no license)

Status: code verified, 9 files readable, 2 matches

Thursday, 20 October 2022 (1 paper)

[195] doi:10.1016/j.jbc.2022.102621 [paper, repository]

A lysine residue from an extracellular turret switches the ion preference in a Cav3 T-Type channel from calcium to sodium ions.

Journal: The Journal of biological chemistry

Authors' code: deepmind/alphafold (Apache-2.0)

Status: code verified, 101 files readable

Wednesday, 5 October 2022 (1 paper)

[196] doi:10.1007/s00018-022-04506-9 [paper, repository]

Hetero-pentamerization determines mobility and conductance of Glycine receptor α3 splice variants.

Journal: Cellular and molecular life sciences : CMLS

Authors' code: cup.uni-muenchen.de/pc/lamb (no license), PAM-PIE/PAM (GPL-3.0), PAM-PIE/PAMcompiled (GPL-3.0)

Status: code verified, 1,231 files readable, 2 matches

Wednesday, 31 August 2022 (1 paper)

[197] doi:10.3389/fendo.2022.889122 [paper, data]

Gabra5 plays a sexually dimorphic role in POMC neuron activity and glucose balance.

Journal: Frontiers in endocrinology

Status: data only, 1 dataset cited

Wednesday, 10 August 2022 (2 papers)

[198] doi:10.1152/jn.00184.2022 [paper, data]

In vitro longitudinal lumbar spinal cord preparations to study sensory and recurrent motor microcircuits of juvenile mice.

Journal: Journal of neurophysiology

Status: data only, 1 dataset cited

[199] doi:10.3389/fncel.2022.913299 [paper, repository]

Interferon-γ augments GABA release in the developing neocortex <i>via</i> nitric oxide synthase/soluble guanylate cyclase and constrains network activity.

Journal: Frontiers in cellular neuroscience

Authors' code: spyking-circus/spyking-circus (CECILL-2.1), cortex-lab/phy (BSD-3-Clause)

Status: code verified, 269 files readable, 2 matches

Tuesday, 9 August 2022 (1 paper)

[200] doi:10.3389/fnmol.2022.976910 [paper, data]

Biophysical characterization of light-gated ion channels using planar automated patch clamp.

Journal: Frontiers in molecular neuroscience

Status: data only, 1 dataset cited

Saturday, 30 July 2022 (1 paper)

[201] doi:10.1038/s41597-022-01569-y [paper, repository]

Single cell transcriptome sequencing of inspiratory neurons of the preBötzinger complex in neonatal mice.

Journal: Scientific data

Authors' code: prajkta9/bioinformatics-scRNA-seq (no license), doi:10.6084/m9.figshare.c.6097332.v1 (no license)

Status: code verified, 4 files readable, 2 matches

Tuesday, 19 July 2022 (1 paper)

[202] doi:10.3390/ijms23147953 [paper, data]

Disruption of a Conservative Motif in the C-Terminal Loop of the KCNQ1 Channel Causes LQT Syndrome.

Journal: International journal of molecular sciences

Status: data only, 1 dataset cited

Monday, 18 July 2022 (1 paper)

[203] doi:10.1371/journal.pcbi.1010364 [paper, repository]

Network resonance can be generated independently at distinct levels of neuronal organization.

Journal: PLoS computational biology

Authors' code: EranStarkLab/NetworkResonance (no license)

Status: code verified, 26 files readable, 2 matches

Monday, 11 July 2022 (1 paper)

[204] doi:10.1073/pnas.2202269119 [paper, data]

Yoda1's energetic footprint on Piezo1 channels and its modulation by voltage and temperature.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 1 dataset cited

Friday, 1 July 2022 (1 paper)

[205] doi:10.1523/eneuro.0073-22.2022 [paper, repository]

Network States Classification based on Local Field Potential Recordings in the Awake Mouse Neocortex.

Journal: eNeuro

Authors' code: yzerlaut/Network_State_Index (no license), Zenodo 6597313 (other-open)

Status: code verified, 12 files readable, 2 matches

Sunday, 19 June 2022 (1 paper)

[206] doi:10.1111/acel.13661 [paper]

Sensitivity of the S1 neuronal calcium network to insulin and Bay-K 8644 in vivo: Relationship to gait, motivation, and aging processes.

Journal: Aging cell

Status: code on request

Friday, 17 June 2022 (1 paper)

[207] doi:10.1186/s13041-022-00941-8 [paper, data]

mTORC1 function in hippocampal parvalbumin interneurons: regulation of firing and long-term potentiation of intrinsic excitability but not long-term contextual fear memory and context discrimination.

Journal: Molecular brain

Status: data only, 1 dataset cited

Wednesday, 15 June 2022 (1 paper)

[208] doi:10.3390/brainsci12060789 [paper, repository]

Synaptic Dysfunction by Mutations in &lt;i&gt;GRIN2B&lt;/i&gt;: Influence of Triheteromeric NMDA Receptors on Gain-of-Function and Loss-of-Function Mutant Classification.

Journal: Brain sciences

Authors' code: acp29/Elmasri_GRIN2B (GPL-3.0)

Status: code verified, 16 files readable, 15 matches

Monday, 13 June 2022 (1 paper)

[209] doi:10.1371/journal.pcbi.1009717 [paper, repository]

Computational simulations and Ca2+ imaging reveal that slow synaptic depolarizations (slow EPSPs) inhibit fast EPSP evoked action potentials for most of their time course in enteric neurons.

Journal: PLoS computational biology

Authors' code: ParvinZE/Slow-EPSPs (no license)

Status: code verified, 8 files readable

Friday, 6 May 2022 (1 paper)

[210] doi:10.1016/j.neuron.2022.04.008 [paper, repository]

Walking strides direct rapid and flexible recruitment of visual circuits for course control in Drosophila.

Journal: Neuron

Authors' code: jbohnslav/deepethogram (other), Zenodo 6365304 (CC-BY-4.0)

Status: code verified, 99 files readable, 15 matches

Sunday, 1 May 2022 (2 papers)

[211] doi:10.1016/j.celrep.2022.110892 [paper, repository]

Differentiation of Hebbian and homeostatic plasticity mechanisms within layer 5 visual cortex neurons.

Journal: Cell reports

Authors' code: Zenodo 6482880 (other-open)

Status: code verified, 5 files readable

[212] doi:10.1523/eneuro.0060-22.2022 [paper, repository]

Dendritic Compartmentalization of Learning-Related Plasticity.

Journal: eNeuro

Authors' code: adamimos/FearfulDendrites (no license)

Status: code verified, 136 files readable, 1 match