A µ-opioid receptor superagonist analgesic with minimal adverse effects.
A correction to this paper has been published: the notice, 42032332, from Europe PMC.
The 2 matches
- [1] § Methods › Fibre photometry › dLight 1.3b ↔ GREEN_ISO_awake_inj.m, lines 83–139 · score 0.71 · pass filtered, biosensor signal, baseline period, awake, Isosbestic, fit
- [2] § Methods › Fibre photometry › dLight 1.3b ↔ Spikes_Events_Drug_Script.m, lines 1–48 · score 0.57 · polynomial fit, baseline period, downsampled, Isosbestic, drugs, signal
Paper
Loaded from Europe PMC by your browser, not stored by OSCR: doi.org · Europe PMC
The paper is loaded when this pane is shown.
The authors' code
MATLAB · 242 lines · 6.9 KB · no license · 1 match
- %% IMPORT AND PROCESS DORIC DATA FROM DORIC FILE
- % ([email hidden])
- % update: uses ALS calculated baseline to fit isosbestic
- % update 20/01/2026: bin peak data
- clear
- close all
- filename = uigetfile({'*.doric'}, 'Pick the FP file'); %select a file (open split down menu and select all file to show the CSV files)
- name = input("Enter a name: ", 's');
- if isempty(name)
- name = strsplit(filename,".");
- name = string(name(1));
- end
- RAWDATA = ExtractDataAcquisition(filename);
- GREEN = RAWDATA(3).Data(2).Data;
- ISOSBESTIC = RAWDATA(4).Data(2).Data;
- % RED = RAWDATA(5).Data(1).Data ;
- Times = RAWDATA(3).Data(1).Data ;
- sr = round(length(Times)/Times(end)); % update to your sampling rate
- %sr= 1205;
- Fig1 = figure;
- subplot (2,1,1)
- plot (Times, GREEN, 'g--');hold on;
- %plot( Times, RED, 'r--');hold on;
- plot (Times, ISOSBESTIC, 'm--')
- % smooth the control trace using the running average
- window_size = round(0.5*sr); % in (C*sr), C is the window size in seconds
- smooth_ISOS = conv(ISOSBESTIC, ones(1, window_size) / window_size, 'same');
- %smooth the GREEN and RED
- GREEN_raw = GREEN;
- GREEN = smoothdata(GREEN, 'sgolay', 0.1*sr);
- %RED_raw = RED;
- %RED = smoothdata(RED, 'sgolay', 100);
- %% ACTIVATE to IMPORT DIGITAL OR ANALOG SIGNALS if NECESSARY
- % data sources will need to be defined
- %DIin1pre = RAWDATA(5).Data(1).Data;
- %DIin4pre = RAWDATA(4).Data(2).Data;
- %AOut1pre = RAWDATA(3).Data(1).Data;
- %AOut4pre = RAWDATA(2).Data(3).Data;
- % fix the timing/align with locked-in data
- %time2 = RAWDATA(2).Data(4).Data;
- %AOut4 = interp1(time2, AOut4pre, Times, 'nearest', 'extrap');
- %attr = h5readatt(filename, '/DataAcquisition/FPConsole', 'DifferenceMasterStartToFirstData')
- %% TRIM DATA TO REMOVE ARTIFACTS
- trimON = 1; %seconds to remove at the start
- trimOFF = 1; %seconds to remove at the end
- GREEN = GREEN(trimON*sr:(length(Times)-trimOFF*sr));
- %RED = RED(trimON*sr:(length(Times)-trimOFF*sr));
- CON = smooth_ISOS(trimON*sr:(length(Times)-trimOFF*sr));
- T = Times(trimON*sr:(length(Times)-trimOFF*sr));
- % if you have imported signals, activate/rename:
- %Pelec = AOut4(trimON*sr:(length(AOut4)-trimOFF*sr));
- %Popto = AOut1(trimON*sr:(length(AOut4)-trimOFF*sr));
- %IN1 = DIin1(trimON*sr:(length(DIin1)-trimOFF*sr));
- %IN2 = DIin2(trimON*sr:(length(DIin2)-trimOFF*sr));
- subplot(2,1,1)
- plot (T, GREEN, 'g','LineWidth', 2); hold on;
- plot(T, CON, 'm','LineWidth', 2)
- %plot(T, RED, 'r','LineWidth', 2)
- %plot (T, Pelec*0.1)
- %% correct using isosbestic
- % SCALE ISOSBESTIC CONTROL TO BIOSENSOR SIGNAL LEVELS
- % it uses the minima of the signal values
- %OLD METHOD
- %[~, gminloc] = findpeaks (-GREEN(1:100*sr), 'MinPeakDistance', 3*sr); %find minima locs
- %p = polyfit (CON(gminloc), GREEN(gminloc), 1); %fits a a 1st order equation y = a*x + b
- % if baseline has no peaks, ingore the minima, take only baseline period (~20s)
- %base = 20*60*sr; %the first 20min of data
- %p = polyfit (CON(1:base), GREEN(1:base), 1); %fits a a 1st order equation y = a*x + b
- % NEW METHOD
- % Define parameters for ALS
- lambda = sr*1e4; % Smoothing parameter (higher value = smoother baseline)
- p = 0.01; % Asymmetry parameter (adjust for how peaks affect baseline)
- baseline_G = als_baseline(GREEN, lambda, p);
- flatzone = 60*sr; %define the zone in which the signal should be flat
- % i.e. before the injection/treatment
- p = polyfit (CON(1:flatzone), baseline_G(1:flatzone), 1);
- a = p(1); b = p(2);
- %scale the control
- greenCON = CON*a + b;
- %clear p a b
- cGREEN = (GREEN - greenCON)./greenCON;
- %cGREEN2 = (GREEN - baseline_G)./baselineG; % high pass filter, removes trends
- % same for red channel
- %[~, rminloc] = findpeaks (-RED, 'MinPeakDistance', 2*sr); %find minima locs
- %p = polyfit (CON(rminloc), RED(rminloc), 1); %fits a a 1st order equation y = a*x + b
- %a = p(1); b = p(2);
- %scale the control
- %redCON = CON*a + b;
- %clear p a b
- %cRED = (RED -redCON)./redCON;
- subplot (2,1,1)
- plot (T, greenCON, 'm','LineWidth', 2);
- plot (T, baseline_G, 'y','LineWidth', 1);
- subplot (2,1,2)
- %plot(T, cRED, 'r','LineWidth', 2); hold on;
- plot (T, cGREEN, 'g','LineWidth', 2, 'DisplayName','Corrected w/ iso'); hold on
- %plot (T, cGREEN2, 'b','LineWidth', 1, 'DisplayName','Corrected w/ baseline'); hold on
- %plot (T, Pelec*0.02-0.01, 'k');
- legend('Corrected w/ iso')
- %% trim around injection
- % keep 15 pre injection and 30 min post
- before = 15 * 60 *sr;
- after = 30 * 60 *sr;
- %
- INJstart = 20*60 + 5;
- INJend = 20*60 + 15;
- %
- [~, idxSTART] = min(abs(T - INJstart));
- [~, idxEND] = min(abs(T - INJend));
- %
- cGREENbefore = cGREEN(idxSTART-before:idxSTART);
- cGREENafter = cGREEN(idxEND:idxEND+after);
- cGREENcut = vertcat(cGREENbefore(2:end), cGREENafter);
- %
- % %cGREENcut(1357727:1359845)=NaN;
- % %cGREENcut(1361776:1366921)=NaN;
- %
- figure
- newT = (-10:1/sr/60:30)';
- plot (newT, cGREENcut);hold on;
- plot ([0 0], [-0.1 0.2], 'k--')
- ylim([-0.1 0.2])
- %% quantify peaks
- [ampl, loc, width, prom] = findpeaks (cGREENcut, ...
- 'MinPeakProminence',0.01,'MinPeakWidth', 0,'MinPeakDistance',0);
- width = width/sr; % in s
- pk_time = newT(loc);
- peak_tbl = table (loc, ampl, prom, width);
- plot (pk_time, ampl, 'or')
- title('dFF corrected data')
- %% zScore
- % and its peaks
- zScore = (cGREENcut-median(cGREENbefore))./std(cGREENbefore);
- [zampl, zloc, zwidth, zprom] = findpeaks (zScore, ...
- 'MinPeakProminence',1.6,'MinPeakWidth', 0,'MinPeakDistance',0);
- zwidth = zwidth/sr; % in s
- zpk_time = newT(zloc);
- zscore_peak_tbl = table (zloc, zampl, zprom, zwidth);
- figure
- plot (newT, zScore); hold on;
- plot (zpk_time, zampl, 'or')
- title('z-score corrected data')
- % bin peak data
- timebin = 5; % bin size in minutes
- t0 = -10; % STARTING TIME in minutes
- nbins = 8; % number of bins
- gbins = nan(nbins,4);
- for i = 1:nbins
- t_start = t0 + timebin*(i-1);
- t_end = t0 + timebin*i;
- idx = zpk_time >= t_start & zpk_time < t_end;
- greenwid = zwidth(idx);
- greenamp = zprom(idx);
- gbins(i,1)= t_end;
- gbins(i,2) = numel(greenwid) / (timebin); % peaks per min
- gbins(i,3) = mean(greenwid, 'omitnan');
- gbins(i,4) = mean(greenamp, 'omitnan');
- end
- disp(['Time bin / Pks per min / Width / Prom ...in: ', num2str(timebin), ' minute bins'])
- disp(gbins)
- %% save figures and selected data
- % activate/deatctivate your option
- save (name)
- %save(name, "T", 'newT', 'cGREENcut', "cGREEN", "peak_tbl","greenCON",'GREEN', 'sr');
- %savefig (Fig1, strcat(name,"_Fig1"))
- %writetable (Gpeaktbl,strcat("summaryPeaksGREEN_",name,".xls"))
- %writetable (Rpeaktbl,strcat("summaryPeaksRED_",name,".xls"))
- %%
- % ALS function
- function baseline = als_baseline(y, lambda, p)
- L = length(y);
- D = diff(speye(L), 2);
- w = ones(L, 1);
- for i = 1:10
- W = spdiags(w, 0, L, L);
- Z = W + lambda * (D' * D);
- baseline = Z \ (w .* y(:));
- w = p * (y > baseline) + (1 - p) * (y <= baseline);
- end
- end
GREEN_ISO_awake_inj.m at commit 0fcc79d, no license · at the source
Overview
and 24 other authors
Grant C. Glatfelter10, Margaret Robinson11, Li Chen11, Angelina A. Mullarkey3, Dain R. Brademan3, Garrett Enten12, William Dunne1, César Quiroz12, Ingrid Schoenborn1, Chae Bin Lee13,14, Rana Rais13,14, Daniel P. Holt15, Robert F. Dannals15, Lei Shi11, Ruth Hüttenhain3, Sergi Ferré12, Eugene Kiyatkin9, Jordi Bonaventura7,8, Yavin Shaham6, Venetia Zachariou5, Michael H. Baumann10, Georgios Skiniotis3,4,16,17, Kenner C. Rice2, Michael Michaelides117 affiliations
- Biobehavioral Imaging and Molecular Neuropsychopharmacology Section, National Institute on Drug Abuse Intramural Research Program,Baltimore, MD USA
- Drug Design and Synthesis Section, Molecular Targets and Medication Discovery Branch, National Institute on Drug Abuse Intramural Research Program,Baltimore, MD USA
- Department of Molecular and Cellular Physiology, Stanford University School of Medicine,Stanford, CA USA
- Department of Structural Biology, Stanford University School of Medicine,Stanford, CA USA
- Department of Pharmacology, Physiology and Biophysics, Boston University Chobanian and Avedisian School of Medicine,Boston, MA USA
- Neurobiology of Relapse Section, National Institute on Drug Abuse Intramural Research Program,Baltimore, MD USA
- Departament de Patologia i Terapèutica Experimental, Institut de Neurociències, Universitat de Barcelona,L’Hospitalet de Llobregat, Spain
- Neuropharmacology and Pain Group, Neuroscience Program, Bellvitge Institute for Biomedical Research (IDIBELL),L’Hospitalet de Llobregat, Spain
- Behavioral Neuroscience Research Branch, National Institute on Drug Abuse Intramural Research Program,Baltimore, MD USA
- Designer Drug Research Unit, National Institute on Drug Abuse Intramural Research Program,Baltimore, MD USA
- Computational Chemistry and Molecular Biophysics Section, National Institute on Drug Abuse Intramural Research Program,Baltimore, MD USA
- Integrative Neurobiology Section, National Institute on Drug Abuse Intramural Research Program,Baltimore, MD USA
- Johns Hopkins Drug Discovery, Johns Hopkins School of Medicine,Baltimore, MD USA
- Department of Neurology, Johns Hopkins School of Medicine,Baltimore, MD USA
- Department of Radiology, Johns Hopkins School of Medicine,Baltimore, MD USA
- Department of Structural Biology, St Jude Children’s Research Hospital,Memphis, TN USA
- Center of Excellence for Structural Cell Biology, St Jude Children’s Research Hospital,Memphis, TN USA
Abstract
Developing safe and effective pain medications is an ongoing challenge for human health. Agonists for the µ-opioid receptor (MOR) are essential pain medications, but their high intrinsic efficacy also induces adverse side effects, including respiratory depression, constipation, tolerance, dependence, withdrawal and addiction1–7. Strategies to limit adverse effects traditionally include developing MOR agonists that have low intrinsic efficacy or that preferentially activate G-protein signalling over β-arrestin signalling8. Here we identify a novel MOR agonist with supramaximal intrinsic efficacy and a unique pharmacological profile that produced effective analgesia in rodents with minimal adverse effects. N-desethyl-fluornitrazen
Reproduced under the paper's license (CC BY), from the paper cited above.
Repositories
Its files are read in the Code ↔ Paper reader above, with 2 matches between paragraphs and lines of code.
wdunne3/Calcium-Fiber-Photometry-Analysis
5692b79b36d2d110988111070b5728c0d2a7e50a, 21 November 2025Availability: 1 check, the latest on 28 September 2026: the link answers
- 28 September 2026: the link answers
9 files
- GCaMP_Drug_Script.m, MATLAB, 149 lines
- Spikes_Events_Drug_Scrip
t.m , MATLAB, 412 lines, 1 match - combineFP3.m, MATLAB, 119 lines
- downsampleFP1.m, MATLAB, 59 lines
- normalizeFP3.m, MATLAB, 183 lines
- packageFP3.m, MATLAB, 44 lines
- pharm_aucFP1.m, MATLAB, 116 lines
- rawTDT1.m, MATLAB, 128 lines
- README.md, Text, 55 lines
BonaventuraLab/fiber-photometry
0fcc79d2f6d612a8b5e1e23ae61f9736538cb9da, 20 January 2026Availability: 1 check, the latest on 28 September 2026: the link answers
- 28 September 2026: the link answers
12 files
- BIN_peak_data.m, MATLAB, 23 lines
- DoricFP3color.m, MATLAB, 175 lines
- FP_video_analysis.m, MATLAB, 119 lines
- FP_video_events.m, MATLAB, 195 lines
- GREEN_ISO_awake_inj.m, MATLAB, 242 lines, 1 match
- GREEN_Pelec_anest.m, MATLAB, 188 lines
- TDTbin2mat.m, MATLAB, 1,442 lines
- TDTprocess.m, MATLAB, 168 lines
- analyzeEnormv2.m, MATLAB, 104 lines
- filterpeaksINZONE.m, MATLAB, 56 lines
- sortFEDsignals_v2.m, MATLAB, 164 lines
- README.md, Text, 3 lines
Code availability
Analysis code is available at GitHub (https://
Reproduced under the paper's license (CC BY), from the paper cited above.
Tracing map
Proposed by the machine: these links were found in the paper and verified at the source, without human review. The map will receive a Zenodo DOI once one of the paper's authors has validated it with their ORCID.
What the map holds:
- 2 repositories of the authors' code, each at its verified commit, with its license and how the link was found in the paper;
- 19 scripts, each with its path and the digest of its content;
- 2 matches between paragraphs of the paper and lines of the code (method lexical-v1);
- neither the text of the paper nor the code itself.
Its JSON (tracing-map.json) is deposited on Zenodo with its DOI once the map is validated.
Data
Datasets cited
- ebi.ac.uk/
pdbe/ , at EMBL-EBI; found in “Data availability”entry
Data availability
The data supporting the findings of this study are available within the paper and its supplementary information files. The cryo-EM density map has been deposited in the Electron Microscopy Data Bank under accession codes EMD-70069 (http://
Reproduced under the paper's license (CC BY), from the paper cited above.
Versions
The history of this record: each version stored by the harvester or made by a correction of its authors or of the maintainers of its code, and what changed in its facts. The texts of the paper (its abstract, its availability statements) are not part of it; versions that changed only those are not listed.
Version 2, 28 September 2026
- Publisher: n/a → Nature Portfolio
Version 1, 28 September 2026: the first record
Recorded: type, language, journal, volume, issue, pages, dates, 44 authors, 4 keywords, 17 MeSH terms, 2 funders, 95 references, 1 RRID, 1 integrity notice.
Cite
This paper
Gomez, J. L., Ventriglia, E. N., Frangos, Z. J., Sulima, A., Robertson, M. J., Sacco, M. D., Budinich, R. C., Giosan, I. M., Xie, T., Solis, O., Tischer, A. E., Bossert, J. M., Caldwell, K. E., Bonbrest, H., Essmann, A., Garçon-Poca, Z. M., Choi, S., Noya, M. R., Limiac, F., . . . Michaelides, M. (2026). A µ-opioid receptor superagonist analgesic with minimal adverse effects. Nature, 652(8112), 1393-1404. https://
BibTeX
@article{gomez2026opioid
author = {Gomez, Juan L. and Ventriglia, Emilya N. and Frangos, Zachary J. and Sulima, Agnieszka and Robertson, Michael J. and Sacco, Michael D. and Budinich, Reece C. and Giosan, Ilinca M. and Xie, Tongzhen and Solis, Oscar and Tischer, Anna E. and Bossert, Jennifer M. and Caldwell, Kiera E. and Bonbrest, Hannah and Essmann, Amelie and Garçon-Poca, Zelai M. and Choi, Shinbe and Noya, Michael R. and Limiac, Feonil and Arce, Ali and Glatfelter, Grant C. and Robinson, Margaret and Chen, Li and Mullarkey, Angelina A. and Brademan, Dain R. and Enten, Garrett and Dunne, William and Quiroz, César and Schoenborn, Ingrid and Lee, Chae Bin and Rais, Rana and Holt, Daniel P. and Dannals, Robert F. and Shi, Lei and Hüttenhain, Ruth and Ferré, Sergi and Kiyatkin, Eugene and Bonaventura, Jordi and Shaham, Yavin and Zachariou, Venetia and Baumann, Michael H. and Skiniotis, Georgios and Rice, Kenner C. and Michaelides, Michael},
title = {{A µ-opioid receptor superagonist analgesic with minimal adverse effects}},
journal = {Nature},
year = {2026},
month = apr,
volume = {652},
number = {8112},
pages = {1393--1404},
publisher = {Nature Portfolio},
issn = {0028-0836},
doi = {10.1038/
url = {https://
pmid = {41922775},
pmcid = {PMC13128446}
}
RIS
TY - JOUR
AU - Gomez, Juan L.
AU - Ventriglia, Emilya N.
AU - Frangos, Zachary J.
AU - Sulima, Agnieszka
AU - Robertson, Michael J.
AU - Sacco, Michael D.
AU - Budinich, Reece C.
AU - Giosan, Ilinca M.
AU - Xie, Tongzhen
AU - Solis, Oscar
AU - Tischer, Anna E.
AU - Bossert, Jennifer M.
AU - Caldwell, Kiera E.
AU - Bonbrest, Hannah
AU - Essmann, Amelie
AU - Garçon-Poca, Zelai M.
AU - Choi, Shinbe
AU - Noya, Michael R.
AU - Limiac, Feonil
AU - Arce, Ali
AU - Glatfelter, Grant C.
AU - Robinson, Margaret
AU - Chen, Li
AU - Mullarkey, Angelina A.
AU - Brademan, Dain R.
AU - Enten, Garrett
AU - Dunne, William
AU - Quiroz, César
AU - Schoenborn, Ingrid
AU - Lee, Chae Bin
AU - Rais, Rana
AU - Holt, Daniel P.
AU - Dannals, Robert F.
AU - Shi, Lei
AU - Hüttenhain, Ruth
AU - Ferré, Sergi
AU - Kiyatkin, Eugene
AU - Bonaventura, Jordi
AU - Shaham, Yavin
AU - Zachariou, Venetia
AU - Baumann, Michael H.
AU - Skiniotis, Georgios
AU - Rice, Kenner C.
AU - Michaelides, Michael
TI - A µ-opioid receptor superagonist analgesic with minimal adverse effects
T2 - Nature
J2 - Nature
PY - 2026
DA - 2026/
VL - 652
IS - 8112
SP - 1393
EP - 1404
SN - 0028-0836
PB - Nature Portfolio
DO - 10.1038/
UR - https://
LA - en
ER -
CSL-JSON
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