Every paper, by date: page 28

4,974 papers with a page: 2,882 with their authors' code, 597 with code on request, 1,495 with data only. The most recent first, 100 a page. Page 28 of 50: 8 June 2026 to 4 June 2026.

Monday, 8 June 2026 (43 papers, 32 on this page)

[2701] doi:10.1038/s41531-026-01420-w [paper, data]

Locus coeruleus α-synuclein overexpression induces prodromal Parkinsonian features in mice.

Journal: NPJ Parkinson's disease

Status: data only, 1 dataset cited

[2702] Code ↔ Paper doi:10.1038/s41586-026-10735-w [paper, repository]

Distributed control circuits across a brain-and-cord connectome.

Journal: Nature

Authors' code: doi:10.7910/dvn/7wth1n (no license), Zenodo 15999929 (BSD-3-Clause), jasper-tms/the-banc-fly-connectome (GPL-3.0), huit.harvard.edu/ai-sandbox (no license), console.cloud.google.com/storage/browser (no license), CAVEconnectome/pcg_skel (MIT), sjcabs/fly_connectome_data_tutorial (MIT), Zenodo 20350642 (CC-BY-4.0), Zenodo 20350572 (GPL-3.0), Zenodo 20350564 (GPL-3.0), Zenodo 20350570 (GPL-3.0), Zenodo 20350648 (GPL-3.0), Zenodo 20350566 (GPL-3.0), Zenodo 21282630 (BSD-3-Clause)

Status: code verified, 467 files readable, 40 matches

[2703] Code ↔ Paper doi:10.1038/s41593-026-02318-9 [paper, repository]

Induction of cortical on/off periods in awake mice fulfills sleep functions.

Journal: Nature neuroscience

Authors' code: CSC-UW/OFF_PERIOD_INDUCTION_MATERIALS (MIT), CSC-UW/sleepscore (no license)

Status: code verified, 92 files readable, 7 matches

[2704] doi:10.1038/s41597-026-07540-5 [paper, data]

A multimodal epilepsy dataset of paired 3-Tesla and 7-Tesla MRI and intracranial EEG.

Journal: Scientific data

Status: data only, 1 dataset cited

[2705] doi:10.1038/s41598-026-50542-x [paper, data]

Cortical representation of motion sequence processing in younger and older adults: an fMRI study.

Journal: Scientific reports

Status: data only, 1 dataset cited

[2706] doi:10.1038/s41598-026-54127-6 [paper, data]

Canonical autophagy remains inactive in induced pluripotent stem cells and neuronal progenitor cells following DNA damage induced by BPDE or etoposide.

Journal: Scientific reports

Status: data only, 1 dataset cited

[2707] Code ↔ Paper doi:10.1038/s41598-026-55225-1 [paper, repository]

Benchmarking criteria to determine latent linear dimensionality in neural data.

Journal: Scientific reports

Authors' code: francescovaccari/Dimensionality-estimation (MIT), francescovaccari/Dimensionality-estimation-upper-bound (MIT)

Status: code verified, 23 files readable, 19 matches

[2708] doi:10.1038/s41598-026-55790-5 [paper, data]

Parthenogenote-derived brain unveils the critical role of paternal genome in neural development.

Journal: Scientific reports

Status: data only, 1 dataset cited

[2709] Code ↔ Paper doi:10.1038/s41598-026-56070-y [paper, repository]

SSDLabeler: realistic semi-synthetic data generation for multi-label artifact classification in EEG.

Journal: Scientific reports

Authors' code: AkimaCon/SSDLabeler (CC-BY-SA-4.0)

Status: code verified, 17 files readable, 8 matches

[2710] Code ↔ Paper doi:10.1038/s41598-026-56387-8 [paper, repository]

Alterations in topological and dynamical parameters correlate with disease biomarkers and neuropsychological scores in prodromic stages of dementia.

Journal: Scientific reports

Authors' code: Anita-93/TVB_rww_tutorial (no license), wiki.ebrains.eu/bin/view (no license)

Status: code verified, 2 files readable, 1 match

[2711] doi:10.1038/s41598-026-56607-1 [paper, data]

Flunarizine changes microRNA expression in cell cultures and in a mouse model of spinal muscular atrophy.

Journal: Scientific reports

Status: data only, 2 datasets cited

[2712] doi:10.1038/s41598-026-56920-9 [paper, data]

Overexpression of miR-219 as a potential therapeutic strategy of glioblastoma cells in vitro.

Journal: Scientific reports

Status: data only, 1 dataset cited

[2713] doi:10.1038/s41598-026-57238-2 [paper]

Cardiac biomarkers combined with neuroimaging localization predict long-term outcomes in acute stroke patients.

Journal: Scientific reports

Status: code on request

[2714] Code ↔ Paper doi:10.1038/s42003-026-10446-y [paper, repository]

Transcriptional analyses identify pericyte-centered signaling programs altered by sex and brain region in Alzheimer's Disease.

Journal: Communications biology

Authors' code: ccc-protocols.readthedocs.io (no license), Zenodo 16760785 (CC-BY-4.0)

Status: code verified

[2715] Code ↔ Paper doi:10.1038/s42255-026-01539-3 [paper, repository]

A cross-species atlas of the dorsal vagal complex reveals neural mediators of the effects of cagrilintide on energy balance.

Journal: Nature metabolism

Authors' code: perslab/ludwig-coester-Gordian-2025 (no license)

Status: code verified, 17 files readable, 15 matches

[2716] doi:10.1073/pnas.2523612123 [paper, data]

A pericyte chloride clamp mechanism governs capillary control of cerebral blood flow.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 1 dataset cited

[2717] Code ↔ Paper doi:10.1093/braincomms/fcag217 [paper, repository]

Investigation of stress hormones across multiday seizure cycles.

Journal: Brain communications

Authors' code: RiPLresearch/cortisol-study-brain-communications (no license)

Status: code verified, 7 files readable, 3 matches

[2718] Code ↔ Paper doi:10.1113/jp290979 [paper, repository]

A method of compensating for the excitability of spinal motoneurones when estimating the magnitude of potentials evoked in skeletal muscles.

Journal: The Journal of physiology

Authors' code: Zenodo 20037178 (CC-BY-4.0)

Status: code verified, 4 files readable, 11 matches

[2719] Code ↔ Paper doi:10.1159/000552942 [paper, repository]

How Standardized Is Transcranial Magnetic Stimulation Treatment for Depression? Large-Cohort Modeling Reveals Systematic Dosimetric Variability.

Journal: Psychotherapy and psychosomatics

Authors' code: nuan750/2026-zhang-TMS-dosimetric-variability (no license)

Status: code verified, 9 files readable, 2 matches

[2720] Code ↔ Paper doi:10.1162/imag.a.1268 [paper, repository]

Real-time fMRI-triggered experience sampling: A proof-of-concept study.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: DynamicBrainMind/rtfMRI_prep (no license), OSF as2q9 (no license)

Status: code verified, 10 files readable, 5 matches

[2721] doi:10.1186/s12864-026-13028-8 [paper, data]

Selective hippocampal transcriptional adaptation to long-term cannabidiol exposure in mice.

Journal: BMC genomics

Status: data only, 5 datasets cited

[2722] Code ↔ Paper doi:10.1186/s12888-026-08178-8 [paper, repository]

Machine learning model to identify gut microbiome-derived metabolites as potential biomarkers of autism spectrum disorder: a pilot study.

Journal: BMC psychiatry

Authors' code: dec0der0b/IMPC (MIT)

Status: code verified, 14 files readable, 4 matches

[2723] doi:10.1186/s12913-026-14781-y [paper, data]

Indicators for palliative care integration in primary health care: how expert profile shapes consensus in a modified Delphi study.

Journal: BMC health services research

Status: data only, 9 datasets cited

[2724] doi:10.1186/s12967-026-08397-3 [paper, data]

FAM135B suppresses glioblastoma angiogenesis via stabilizing the IKK complex and inactivating the NF-κB/IL-6 signaling pathway.

Journal: Journal of translational medicine

Status: data only, 1 dataset cited

[2725] Code ↔ Paper doi:10.1371/journal.pbio.3003847 [paper, repository]

Metabolic organization of macaque visual cortex reflects visual field topography and perceptual specialization.

Journal: PLoS biology

Authors' code: mikearcaro/brainmaps (no license)

Status: code verified, 2 files readable

[2726] Code ↔ Paper doi:10.1371/journal.pcbi.1014297 [paper, repository]

Statistics of cortical representational drift can enable robust readout.

Journal: PLoS computational biology

Authors' code: CharlesMicou/heavy-tailed-drift (no license)

Status: code verified, 11 files readable

[2727] Code ↔ Paper doi:10.21203/rs.3.rs-9940836/v1 [paper, repository]

Representational Tuning Models: Parametric Encoding Within Arbitrary Stimulus Domains

Journal: Research Square (preprint)

Authors' code: StanBgy/representational_tuning (MIT)

Status: code verified, 79 files readable, 5 matches

[2728] Code ↔ Paper doi:10.2196/80616 [paper, repository]

Digital Interventions Addressing Cognitive and Psychological Symptoms in Long COVID: Scoping Review of Multicomponent Approaches.

Journal: Interactive journal of medical research

Authors' code: OSF hx7ue (no license)

Status: empty repository

[2729] doi:10.3389/fendo.2026.1789738 [paper]

Cellular expression domains of type 3 deiodinase in the meninges, choroid plexus, tanycytes and barrier tissues of the brain.

Journal: Frontiers in endocrinology

Status: data only

[2730] Code ↔ Paper doi:10.3390/e28060644 [paper, repository]

Riemannian Geometry for Noise-Robust Covariance Network Analysis of Schizophrenia EEG: Geometric-Entropic Signatures of Dysconnectivity.

Journal: Entropy (Basel, Switzerland)

Authors' code: kaggle.com/datasets/broach (no license)

Status: dead link

[2731] Code ↔ Paper doi:10.34133/csbj.0134 [paper, repository]

Integrated Multi-Tissue Transcriptomics Reveals Antagonistic Pleiotropy in Aging and Alzheimer's Disease.

Journal: Computational and structural biotechnology journal

Authors' code: salihoglu/Alzheimer_AP (no license)

Status: code verified, 15 files readable, 18 matches

[2732] Code ↔ Paper doi:10.7554/elife.99278 [paper, repository]

Brain-wide arousal signals are segregated from movement planning in the superior colliculus of the macaque.

Journal: eLife

Authors' code: SmithLabNeuro/nasnet (no license)

Status: code verified, 21 files readable

Sunday, 7 June 2026 (1 paper)

[2733] Code ↔ Paper doi:10.1038/s41598-026-56170-9 [paper, repository]

Path integration from optic flow and the role of eye movements.

Journal: Scientific reports

Authors' code: tam-datahub.online.uni-marburg.de/handle/tam (no license)

Status: code verified

Saturday, 6 June 2026 (16 papers)

[2734] Code ↔ Paper doi:10.1016/j.celrep.2026.117505 [paper, repository]

Impaired spatial coding and neuronal hyperactivity in the medial entorhinal cortex of aged APP knock-in mice.

Journal: Cell reports

Authors' code: Zenodo 19040105 (CC-BY-4.0), klusta-team/klustakwik (no license), glmmTMB/glmmTMB (no license), florianhartig/DHARMa (gnu), hussainilab/rodriguez-et-al-cell-reports-2026 (no license)

Status: code verified, 365 files readable, 2 matches

[2735] doi:10.1016/j.dib.2026.112940 [paper, data]

BIDS-formatted resting-state and loudness dependence of auditory evoked potentials (LDAEP) EEG dataset from healthy women.

Journal: Data in brief

Status: data only, 1 dataset cited

[2736] Code ↔ Paper doi:10.1016/j.ebiom.2026.106324 [paper, repository]

Refined single-cell profiling captures a CCR5<sup>high</sup> CD4<sup>+</sup> cytotoxic T-cell precursor in multiple sclerosis.

Journal: EBioMedicine

Authors' code: YFWang-YvH/Refined-single-cell-profiling-captures-a-CCR5high-CD4-cytotoxic-T-cell-precursor-in-MS (no license)

Status: code verified, 7 files readable, 4 matches

[2737] Code ↔ Paper doi:10.1038/s41467-026-73945-w [paper, repository]

Brain neuromarkers predict self- and other-related mentalizing across adult, clinical, and developmental samples.

Journal: Nature communications

Authors' code: ldmk/2025_MentalizingSignatures (MIT), Zenodo 19461625 (MIT)

Status: code verified, 40 files readable, 22 matches

[2738] Code ↔ Paper doi:10.1038/s41467-026-74000-4 [paper, repository]

ArchVelo: archetypal velocity modeling for single-cell multi-omic trajectories.

Journal: Nature communications

Authors' code: pritykinlab/ArchVelo (BSD-3-Clause), pritykinlab/ArchVelo_notebooks (BSD-3-Clause), Zenodo 20085695 (BSD-3-Clause)

Status: code verified, 51 files readable, 14 matches

[2739] doi:10.1038/s41467-026-74058-0 [paper, data]

IQGAP3 bridges matrix stiffness with glioma stem cell maintenance and radioresistance by stabilizing SOX2.

Journal: Nature communications

Status: data only, 1 dataset cited

[2740] Code ↔ Paper doi:10.1038/s41467-026-74087-9 [paper, repository]

Cryo-EM structures of heteromeric Kir4.1/5.1 channel suggest mechanisms of inward rectification and channel blockage.

Journal: Nature communications

Authors' code: Zenodo 20374687 (CC-BY-4.0)

Status: code verified

[2741] Code ↔ Paper doi:10.1038/s41531-026-01421-9 [paper, repository]

Cortico-pallidal beta dynamics underlie impaired turning in Parkinson's disease.

Journal: NPJ Parkinson's disease

Authors' code: openmind-consortium/Analysis-rcs-data (no license)

Status: code verified, 157 files readable

[2742] Code ↔ Paper doi:10.1038/s41597-026-07423-9 [paper, repository]

Unraveling the Complexity of Multilingual Comprehension: Neuroimaging and Linguistic Profiling in 700+ Adults.

Journal: Scientific data

Authors' code: OSF b6ur5 (no license)

Status: code verified, 39 files readable, 7 matches

[2743] Code ↔ Paper doi:10.1038/s42003-026-10462-y [paper, repository]

SpaDC enables sequence-based integrative analysis and regulatory inference of spatial chromatin accessibility data.

Journal: Communications biology

Authors' code: mcllllllll/SpaDC (MIT), Zenodo 20300757 (CC-BY-4.0)

Status: code verified, 30 files readable, 12 matches

[2744] Code ↔ Paper doi:10.1093/braincomms/fcag216 [paper, repository]

Affective and cognitive theory of mind and associated brain functional alterations in frontotemporal dementia.

Journal: Brain communications

Authors' code: SilviaBasaia/Theory-of-mind-in-frontotemporal-dementia (no license)

Status: code verified, 4 files readable, 1 match

[2745] Code ↔ Paper doi:10.1186/s10194-026-02419-7 [paper, repository]

Transcriptional correlates of structure-function coupling plasticity in trigeminal neuralgia: unveiling the synaptic and metabolic associations.

Journal: The journal of headache and pain

Authors' code: starz0275/TN_SF_Code (no license)

Status: code verified, 4 files readable, 2 matches

[2746] doi:10.1186/s12879-026-13704-w [paper, data]

Association of Staphylococcus aureus bloodstream infection with 7-day incident delirium in critically Ill adults: a propensity-weighted competing risk analysis.

Journal: BMC infectious diseases

Status: data only, 2 datasets cited

[2747] doi:10.1186/s13195-026-02107-3 [paper, data]

FKBP51 inhibition by SAFit2 modulates tau pathology and cognitive deficits in PS19 mice.

Journal: Alzheimer's research & therapy

Status: data only, 1 dataset cited

[2748] doi:10.3390/jimaging12060251 [paper, data]

3D Deep Learning for Brain Tumor Segmentation and Survival Prediction: A Comprehensive Multi-Modal Analysis Using the BraTS2020 Dataset.

Journal: Journal of imaging

Status: data only, 1 dataset cited

[2749] doi:10.3390/mi17060697 [paper]

Miniaturized Wearable System for Multimodal EEG/ECG/EMG Sensing and Real-Time Physiological Monitoring.

Journal: Micromachines

Status: code on request

Friday, 5 June 2026 (34 papers)

[2750] doi:10.1002/epi.70254 [paper]

Use of artificial intelligence in magnetic resonance imaging across the epileptic patient's journey: A meta-analysis of four clinical applications.

Journal: Epilepsia

Status: code on request

[2751] doi:10.1007/s11682-026-01167-1 [paper, data]

Estradiol modulated brain connectivity in females during midlife performing an episodic memory task.

Journal: Brain imaging and behavior

Status: data only, 1 dataset cited

[2752] doi:10.1007/s12035-026-05965-y [paper, data]

Microglia Attenuate Neuroinflammation After Subarachnoid Hemorrhage by Modulating Astrocyte Phenotypic Transformation via the RARα/Mafb/Msr1 Pathway.

Journal: Molecular neurobiology

Status: data only, 1 dataset cited

[2753] doi:10.1007/s12672-026-05243-2 [paper]

Identification of hub mRNAs and long non-coding RNAs involved in temozolomide-resistant glioblastoma (brain cancer) cell lines.

Journal: Discover oncology

Status: data only

[2754] Code ↔ Paper doi:10.1016/j.bbih.2026.101275 [paper, repository]

A protocol for the Teen Bugs study: An integrative, multi-omics approach to understanding the role of the gut microbiome and mesocorticolimbic system in adolescent mental health following early adverse caregiving.

Journal: Brain, behavior, & immunity - health

Authors' code: bablab/bablab_hoffman_metagenomics (no license)

Status: code verified, 7 files readable

[2755] Code ↔ Paper doi:10.1016/j.bpj.2026.06.005 [paper, repository]

Curvature-based machine-learning method for automated segmentation of dendritic spines.

Journal: Biophysical journal

Authors' code: aka-gera/curvature-based-machine-learning-for-automated-segmentation-of-dendritic-spines (no license), Zenodo 19593999 (CC-BY-4.0)

Status: code verified, 47 files readable, 7 matches

[2756] Code ↔ Paper doi:10.1016/j.crmeth.2026.101476 [paper, repository]

Unsupervised deep learning enables blur-free resolution enhancement in two-photon microscopy.

Journal: Cell reports methods

Authors' code: HaLU-9000/TENET (no license), Zenodo 19663648 (CC-BY-4.0)

Status: code verified, 47 files readable, 5 matches

[2757] Code ↔ Paper doi:10.1016/j.dcn.2026.101755 [paper, repository]

ABCD-ReproNim: An educational program for responsible and reproducible analyses of ABCD data.

Journal: Developmental cognitive neuroscience

Authors' code: ABCD-ReproNim (no license)

Status: code verified

[2758] Code ↔ Paper doi:10.1016/j.isci.2026.116116 [paper, repository]

Learning stable radiation boundaries for wave simulations via passive neural state-space models.

Journal: iScience

Authors' code: Blizzard-Passage-Lab/NP-SSM_CRBC (no license), Blizzard-Passage-Lab/NP-SSM–CRBC.•Any (no license)

Status: dead link

[2759] doi:10.1016/j.isci.2026.116190 [paper]

Behavioral algorithms of ontogenetic switching in larval and juvenile zebrafish phototaxis.

Journal: iScience

Status: code on request

[2760] Code ↔ Paper doi:10.1016/j.isci.2026.116231 [paper, repository]

Endocytic turnover of endothelial cell-membrane proteins as a driver of rat blood-brain barrier specialization and dysfunction.

Journal: iScience

Authors' code: Molecular-Bionics-Labs/DP_GP_cluster_proteomics (BSD-3-Clause), PrincetonUniversity/DP_GP_cluster (BSD-3-Clause)

Status: code verified, 26 files readable, 2 matches

[2761] doi:10.1038/s12276-026-01732-0 [paper, data]

Comprehensive proteogenomic characterization reveals clinically relevant molecular subtypes associated with medulloblastoma progression.

Journal: Experimental & molecular medicine

Status: data only, 1 dataset cited

[2762] Code ↔ Paper doi:10.1038/s41398-026-04143-x [paper, repository]

Neighborhood opportunity, white matter, and cognition in a large pediatric neuroimaging study.

Journal: Translational psychiatry

Authors' code: neslihanyildizozhan/ABCD-COI (CC-BY-4.0), pnlbwh/dMRIharmonization (other), Zenodo 2584275 (CC-BY-4.0)

Status: code verified, 79 files readable, 8 matches

[2763] Code ↔ Paper doi:10.1038/s41420-026-03185-w [paper, repository]

An electrophysiological and proteomics roadmap for human induced glutamatergic neurons: fine-tuning of culture conditions for pathophysiological studies.

Journal: Cell death discovery

Authors' code: mathworks.com/matlabcentral/fileexchange (no license), ennionano/functional_roadmap_for_induced_glut-neurons (no license)

Status: code verified, 3 files readable, 6 matches

[2764] Code ↔ Paper doi:10.1038/s41467-026-73347-y [paper, repository]

A week in the life of the human brain reveals stable states punctuated by chaotic-like transitions.

Journal: Nature communications

Authors' code: MNobodyWang/WeekLongBrain (no license), Zenodo 18718538 (CC-BY-4.0)

Status: code verified, 70 files readable, 8 matches

[2765] Code ↔ Paper doi:10.1038/s41467-026-73858-8 [paper, repository]

A pegivirus associated with encephalitis in red-legged partridges shows neurotropism across avian species.

Journal: Nature communications

Authors' code: nicola-palmieri/TableAnalyzer (MIT), Zenodo 19233119 (CC-BY-4.0)

Status: code verified, 114 files readable

[2766] doi:10.1038/s41467-026-74037-5 [paper, data]

Microglial CD31 suppresses Aβ clearance and promotes Alzheimer pathology in 5×FAD mice.

Journal: Nature communications

Status: data only, 1 dataset cited

[2767] Code ↔ Paper doi:10.1038/s41514-026-00397-3 [paper, repository]

Nasal administration of Protollin enhances monocyte phagocytosis and decreases CD8<sup>+</sup> T cell cytotoxicity in subjects with early Alzheimer's disease: a Phase 1 clinical trial.

Journal: npj aging

Authors' code: ronaldosfjunior/Kolypetri-et-al-2025 (no license)

Status: code verified, 6 files readable, 12 matches

[2768] Code ↔ Paper doi:10.1038/s41598-026-51531-w [paper, repository]

Multimodal age-dependent diffusion-MRI analysis of the neocortex in a rat model of cortical dysplasia.

Journal: Scientific reports

Authors' code: Biomedical-Imaging-Group/OrientationJ (GPL-3.0), paulinajv/Vertex-wise-LMM-analysis (no license), lconcha/Displasias (no license)

Status: code verified, 228 files readable, 5 matches

[2769] Code ↔ Paper doi:10.1038/s41746-026-02713-3 [paper, repository]

Learning like a radiologist: a medical vision-language model for radiological image analysis via curriculum learning.

Journal: NPJ digital medicine

Authors' code: Erickeyan/RadiSim (no license)

Status: code verified, 44 files readable

[2770] doi:10.1038/s41746-026-02828-7 [paper]

Age, emotional burden and deep brain stimulation electrode location shape Parkinson's disease quality of life.

Journal: NPJ digital medicine

Status: code on request

[2771] doi:10.1038/s42003-026-10445-z [paper]

Structure-function coupling of large-scale cortical networks across the lifespan is spectrally specific.

Journal: Communications biology

Status: code on request

[2772] doi:10.1080/15476286.2026.2682069 [paper, data]

The RNA-binding activity of the <i>Drosophila</i> Brat protein is necessary for viability and mRNA regulation.

Journal: RNA biology

Status: data only, 1 dataset cited

[2773] Code ↔ Paper doi:10.1162/imag.a.1249 [paper, repository]

Global search metaheuristics for neural mass model calibration.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: domdunstan/Global_NMM_parameter_inference (MIT)

Status: code verified, 12 files readable, 7 matches

[2774] doi:10.1162/imag.a.1265 [paper]

Neurophysiological mechanisms of optimized graphomotor performance in biscriptuals.

Journal: Imaging neuroscience (Cambridge, Mass.)

Status: code on request

[2775] Code ↔ Paper doi:10.1186/s12888-026-08253-0 [paper, repository]

Longitudinal changes in amygdala-supplementary motor area connectivity and their association with recurrent self-harm in adolescents with mood disorders.

Journal: BMC psychiatry

Authors' code: HerveAbdi/data4PCCAR (no license)

Status: code verified, 52 files readable, 3 matches

[2776] Code ↔ Paper doi:10.1371/journal.pcbi.1014346 [paper, repository]

StPedf: Cell trajectory inference of spatial transcriptomics via spatial proximity embedding and spatial density-adaptive fusion.

Journal: PLoS computational biology

Authors' code: YuanZ0316/StPedf (no license)

Status: code verified, 20 files readable, 7 matches

[2777] doi:10.1371/journal.pone.0351146 [paper]

Differential analysis of Short chain fatty acids incubation in autistic organoids based on transcriptome sequencing.

Journal: PloS one

Status: data only

[2778] Code ↔ Paper doi:10.21769/bioprotoc.5708 [paper, repository]

Measuring Electrophysiological Activity in Acute Brain Slices, Spheroids, and Organoids Using 3D High-Density Multielectrode Arrays.

Journal: Bio-protocol

Authors' code: Zenodo 13908319 (no license)

Status: code verified, 1 file readable

[2779] Code ↔ Paper doi:10.21769/bioprotoc.5711 [paper, repository]

Quantitative Analysis of Cell and Tissue Shape During Mouse Cranial Neural Tube Closure.

Journal: Bio-protocol

Authors' code: davidmashburn/SeedWaterSegmenter (other)

Status: code verified, 21 files readable, 1 match

[2780] doi:10.3389/fnins.2026.1856135 [paper, data]

Enhancing seizure prediction using a DC-SA-EBiLSTM framework with self-attention mechanism.

Journal: Frontiers in neuroscience

Status: data only, 2 datasets cited

[2781] doi:10.3390/diagnostics16111745 [paper, data]

Brain Tumor Classification and Segmentation in MR Images Using EfficientNet and U-Net++ Models.

Journal: Diagnostics (Basel, Switzerland)

Status: data only, 3 datasets cited

[2782] doi:10.3390/diagnostics16111749 [paper, data]

A Dual-Branch Frequency-Aware Attention Framework for Rare Neurological Disease Classification from Brain MRI.

Journal: Diagnostics (Basel, Switzerland)

Status: data only, 3 datasets cited

[2783] Code ↔ Paper doi:10.3390/molecules31111972 [paper, repository]

A Bond-Level Sequence Framework for Molecular Representation Learning with Structural Constraints.

Journal: Molecules (Basel, Switzerland)

Authors' code: Haoran-Fan/bondformer (no license)

Status: code verified, 21 files readable, 3 matches

Thursday, 4 June 2026 (53 papers, 17 on this page)

[2784] Code ↔ Paper doi:10.1002/advs.202518450 [paper, repository]

A Brain-Wide Atlas of Astrocytic Oxytocin Receptors Reveals a Glial Basis for Nucleus Accumbens Modulation of Affiliative Behavior.

Journal: Advanced science (Weinheim, Baden-Wurttemberg, Germany)

Authors' code: Team-Charlet/Denis_et_al._2026 (no license)

Status: code verified, 22 files readable, 3 matches

[2785] doi:10.1007/s00701-026-06927-y [paper]

Digital MULTIMAP: a standardization of objects and actions naming task in a french population.

Journal: Acta neurochirurgica

Status: code on request

[2786] Code ↔ Paper doi:10.1016/j.celrep.2026.117456 [paper, repository]

Anterior lateral motor cortex enables contextual decision-making via dynamic reconfiguration of local circuits.

Journal: Cell reports

Authors' code: Zenodo 19828551 (CC-BY-4.0), asjessie/shadlen-lab (no license)

Status: code verified, 8 files readable, 2 matches

[2787] Code ↔ Paper doi:10.1016/j.celrep.2026.117500 [paper, repository]

Spatio-molecular gene expression reflects dorsal anterior cingulate cortex structure and function in the human brain.

Journal: Cell reports

Authors' code: LieberInstitute/spatialdACC (no license), Zenodo 15830481 (CC-BY-4.0), research.libd.org/globus (no license)

Status: code verified, 2,000 files readable, 40 matches

[2788] Code ↔ Paper doi:10.1016/j.dib.2026.112932 [paper, repository]

Dataset of audiovisual unscripted monologues with speech annotations.

Journal: Data in brief

Authors' code: Zenodo 17578693 (CC-BY-4.0)

Status: code verified

[2789] Code ↔ Paper doi:10.1016/j.isci.2026.116123 [paper, repository]

Developmental manganese exposure, but not concurrent lead, alters social processing selectively in male mice.

Journal: iScience

Authors' code: alexdobin/STAR (MIT)

Status: code verified, 331 files readable

[2790] Code ↔ Paper doi:10.1016/j.isci.2026.116135 [paper, repository]

Predicting ICU in-hospital mortality from text-encoded structured EHR data using adaptive transformer layer fusion.

Journal: iScience

Authors' code: Hanziwww/ALFIA (Apache-2.0)

Status: code verified, 4 files readable, 13 matches

[2791] Code ↔ Paper doi:10.1016/j.isci.2026.116151 [paper, repository]

Impaired sleep resilience underlies transient neural instability in insomnia disorder.

Journal: iScience

Authors' code: Zenodo 20070128 (CC-BY-4.0), guhai123/Impaired-sleep-resilience-underlies-transient-neural-instability-in-insomnia-disorder (no license), EtienneCmb/tensorpac (BSD-3-Clause)

Status: code verified, 70 files readable, 2 matches

[2792] Code ↔ Paper doi:10.1016/j.isci.2026.116173 [paper, repository]

Hierarchical sparse spatiotemporal graph neural network for brain graph classification.

Journal: iScience

Authors' code: JiaqiCUI-npu/GLNSTGNNCode (no license)

Status: code verified, 61 files readable, 5 matches

[2793] Code ↔ Paper doi:10.1016/j.isci.2026.116188 [paper, repository]

Genetic inactivation of Translin/Trax RNase disrupts miRNAs, hippocampal synaptic plasticity, and memory.

Journal: iScience

Authors' code: zjpeters/traxTranslinABCAnalysis (no license)

Status: code verified, 3 files readable, 4 matches

[2794] Code ↔ Paper doi:10.1016/j.isci.2026.116242 [paper, repository]

Brain and central nervous system cancer burden in children across Asia.

Journal: iScience

Authors' code: Z-C-Q/CNS (no license)

Status: code verified, 8 files readable, 10 matches

[2795] doi:10.1016/j.isci.2026.116257 [paper, data]

Decoding neuron-specific lineage to identify diagnostic biomarkers and therapeutic targets for ischemic stroke.

Journal: iScience

Status: code on request, 1 dataset cited

[2796] doi:10.1016/j.prdoa.2026.100458 [paper, data]

Timing of device-aided therapy initiation in Parkinson's disease: reference estimates for healthcare planning and biological heterogeneity.

Journal: Clinical parkinsonism & related disorders

Status: data only, 1 dataset cited

[2797] doi:10.1017/s0033291726104711 [paper, data]

Cell-type and spatiotemporal transcriptional signatures of white matter morphometric similarity network alterations in major depressive disorder.

Journal: Psychological medicine

Status: data only, 1 dataset cited

[2798] Code ↔ Paper doi:10.1021/acs.jpcb.6c01662 [paper, repository]

Metadensity Functional Learning for Classical Fluids: Regularizing with Pair Correlations.

Journal: The journal of physical chemistry. B

Authors' code: sfalmo/NeuralDFT-Tutorial (MIT)

Status: code verified, 6 files readable, 2 matches

[2799] doi:10.1038/s41398-026-04121-3 [paper]

The sex-specific role of adrenal androgens in youth psychopathology.

Journal: Translational psychiatry

Status: code on request

[2800] doi:10.1038/s41398-026-04128-w [paper]

A nucleus accumbens-projecting prefrontal cortex circuit underlies chronic social stress-induced depression-like behaviors.

Journal: Translational psychiatry

Status: code on request

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