Every paper, by date: page 27

44,644 papers with a page: 24,189 with their authors' code, 4,955 with code on request, 15,495 with data only. The most recent first, 224 a page. Page 27 of 200: 25 March 2026 to 19 March 2026.

Wednesday, 25 March 2026 (56 papers, 37 on this page)

[5825] Code ↔ Paper doi:10.1038/s41590-026-02472-z [paper, repository]

A transcriptomic microglia taxonomy across mouse and human pathologies.

Journal: Nature immunology

Authors' code: Zenodo 16938034 (CC-BY-4.0)

Status: code verified, 15 files readable, 26 matches

[5826] Code ↔ Paper doi:10.1038/s41593-026-02204-4 [paper, repository]

NeMO Analytics: a compendium of transcriptomic data for the exploration of neocortical development.

Journal: Nature neuroscience

Authors' code: carlocolantuoni/NeocortexDevelopment_Sonthalia2024 (no license), CHuanSite/SJD (no license)

Status: code verified, 63 files readable, 5 matches

[5827] Code ↔ Paper doi:10.1038/s41593-026-02227-x [paper, repository]

Acetylcholine demixes heterogeneous dopamine signals for learning and moving.

Journal: Nature neuroscience

Authors' code: constantinoplelab/published (MIT)

Status: code verified, 454 files readable, 21 matches

[5828] Code ↔ Paper doi:10.1038/s41597-026-07081-x [paper, repository]

A Multimodal Dataset to Investigate Task-Evoked Negative BOLD Response and Neurodegeneration.

Journal: Scientific data

Authors' code: QuantitativeNeuroimagingLaboratory (no license)

Status: code verified

[5829] Code ↔ Paper doi:10.1038/s41598-026-44137-9 [paper, repository]

Predicting the degree of trait emotional empathy from cortical features using surface-based morphometry.

Journal: Scientific reports

Authors' code: OSF 5zc47 (no license), lukas.novak/psychtoolbox (CC-BY-4.0)

Status: code verified, 24 files readable

[5830] Code ↔ Paper doi:10.1038/s44321-026-00393-w [paper, repository]

CDK12/CDK13 inhibition disrupts transcriptional elongation and replication fork progression in glioblastoma.

Journal: EMBO molecular medicine

Authors' code: t-neumann/slamdunk (AGPL-3.0)

Status: code verified, 52 files readable, 3 matches

[5831] Code ↔ Paper doi:10.1073/pnas.2514753123 [paper, repository]

Immune cell profiling reveals expanded stem cell-like memory T cells in anti-GAD65-associated neurological syndromes.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: sumanta-barman/immune-cell-profiling-anti-gad65 (MIT)

Status: code verified, 12 files readable, 9 matches

[5832] Code ↔ Paper doi:10.1073/pnas.2520822123 [paper, repository]

Uncovering the embodied dimension of the wandering mind.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: embodied-computation-group/body_wandering_CCA (no license)

Status: code verified, 126 files readable, 23 matches

[5833] Code ↔ Paper doi:10.1073/pnas.2524075123 [paper, repository]

Neural signatures of human psychological resilience driven by acute stress.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: OSF kvnh9 (no license)

Status: code verified, 3 files readable, 8 matches

[5834] doi:10.1073/pnas.2528466123 [paper, data]

Cnpy1 is a candidate endoplasmic reticulum chaperone of vomeronasal type 2 GPCRs.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 1 dataset cited

[5835] Code ↔ Paper doi:10.1080/15476286.2026.2643366 [paper, repository]

Long non-coding RNA transcripts in crucian carp brain - annotation and expression patterns in anoxia and reoxygenation.

Journal: RNA biology

Authors' code: MagdalenaWinklhofer/LncRNA (no license)

Status: code verified, 44 files readable, 11 matches

[5836] Code ↔ Paper doi:10.1088/1741-2552/ae4925 [paper, repository]

Computational optimization of two-photon holographic stimulation sites<i>in vivo</i>.

Journal: Journal of neural engineering

Authors' code: marcustriplett/photostim-optimizer (GPL-3.0)

Status: code verified, 9 files readable

[5837] Code ↔ Paper doi:10.1126/sciadv.aea8233 [paper, repository]

The human amygdala in threat learning and extinction.

Journal: Science advances

Authors' code: meijer-s/FEARTUS (MIT), Zenodo 17899009 (MIT)

Status: code verified, 602 files readable, 1 match

[5838] doi:10.1126/sciadv.aec9284 [paper, data]

Functional and structural basis of a hypermorphic TRPC3 variant.

Journal: Science advances

Status: data only, 1 dataset cited

[5839] doi:10.1177/13872877261434058 [paper, data]

Aerobic exercise significantly alters <i>Notch1</i> signaling in a neurotoxic hippocampal rat model of Alzheimer's disease.

Journal: Journal of Alzheimer's disease : JAD

Status: data only, 1 dataset cited

[5840] Code ↔ Paper doi:10.1186/s11689-026-09683-3 [paper, repository]

Brain idiosyncrasy during biological-motion perception is amplified in autistic individuals with intellectual impairment.

Journal: Journal of neurodevelopmental disorders

Authors' code: chichael-meng/Brain-idiosyncrasy-in-autism (other)

Status: code verified, 8 files readable, 5 matches

[5841] doi:10.1186/s12935-026-04278-3 [paper, data]

Integrating multi-omics data revealing LIMK1 as a metastatic biomarker in LUAD patients with brain metastasis.

Journal: Cancer cell international

Status: data only, 1 dataset cited

[5842] doi:10.1186/s12944-026-02918-1 [paper, data]

Exploration of the structural diversity and distribution pattern of gangliosides and sulfatides in mouse brain tissues and biomarkers for Parkinson's Disease.

Journal: Lipids in health and disease

Status: data only, 1 dataset cited

[5843] doi:10.1186/s12974-026-03771-w [paper, data]

Dynamics of neutrophilia at the neurovascular unit arising from repeated pulmonary inflammation.

Journal: Journal of neuroinflammation

Status: data only, 1 dataset cited

[5844] Code ↔ Paper doi:10.1186/s12987-026-00797-3 [paper, repository]

Extracellular space diffusion modelling identifies distinct functional advantages of glutamatergic and GABAergic synapse geometries.

Journal: Fluids and barriers of the CNS

Authors' code: Zenodo 18750224 (BSD-3-Clause), tonnesenlab/diffusion-model (BSD-3-Clause)

Status: code verified, 54 files readable, 2 matches

[5845] Code ↔ Paper doi:10.1242/jcs.264245 [paper, repository]

Auxin-inducible degradation of UNC-116 in C. elegans inhibits bidirectional dense core vesicle transport and worm locomotion on different timescales.

Journal: Journal of cell science

Authors' code: umkich/organelle_transport_analysis (MIT), cran.r-project.org/web/packages (no license), jcherzig/ida1_vesicle_analysis (no license)

Status: code verified, 18 files readable, 2 matches

[5846] doi:10.1371/journal.pbio.3003541 [paper, data]

Three-dimensional scene boundary representations for wall orientation and distance are represented distinctly in the human visual cortex.

Journal: PLoS biology

Status: data only, 1 dataset cited

[5847] doi:10.1371/journal.pbio.3003723 [paper, data]

Frontotemporal network interactions causally support rapid concreteness judgments during reading.

Journal: PLoS biology

Status: data only, 1 dataset cited

[5848] doi:10.1523/eneuro.0389-25.2026 [paper, data]

Numbers of Granule Cells and GABAergic Boutons Are Correlated in Shrunken Sclerotic Hippocampi of Sea Lions with Temporal Lobe Epilepsy.

Journal: eNeuro

Status: data only, 1 dataset cited

[5849] Code ↔ Paper doi:10.1523/jneurosci.1151-25.2026 [paper, repository]

β-Bursting as a Sensitive Neural Marker of Inhibitory Control in Healthy Older Adults: A Linear Mixed-Effects Modeling and Threshold-Free Cluster Approach.

Journal: The Journal of neuroscience : the official journal of the Society for Neuroscience

Authors' code: sourceforge.net/faster (no license), OSF 4yu9n (no license)

Status: code verified, 30 files readable, 7 matches

[5850] doi:10.3389/fnhum.2026.1593289 [paper, data]

Processing ergativity in compound light verb constructions: electrophysiological evidence from Hindi.

Journal: Frontiers in human neuroscience

Status: data only, 1 dataset cited

[5851] Code ↔ Paper doi:10.3390/brainsci16040350 [paper, repository]

Self-Learning Multimodal Emotion Recognition Based on Multi-Scale Dilated Attention.

Journal: Brain sciences

Authors' code: yy11z/SL_MER_MSDA (no license)

Status: code verified, 1 file readable

[5852] Code ↔ Paper doi:10.3390/jintelligence14040051 [paper, repository]

Attentional Impairments and Neural Compensation in Adolescents with High Social Anxiety Traits: A Combined ERP and Functional Connectivity Study.

Journal: Journal of Intelligence

Authors' code: pan.baidu.com/s/1skm0pxnxcuifsfdlxi5uaa (no license)

Status: code verified

[5853] Code ↔ Paper doi:10.3390/tomography12040044 [paper, repository]

HAAU-Net: Hybrid Adaptive Attention U-Net Integrated with Context-Aware Morphologically Stable Features for Real-Time MRI Brain Tumor Detection and Segmentation.

Journal: Tomography (Ann Arbor, Mich.)

Authors' code: adeelasghar-cell (no license)

Status: code verified

[5854] Code ↔ Paper doi:10.3758/s13415-025-01394-x [paper, repository]

Mood modulations of emotional word processing: A predictive perspective view of EEG data.

Journal: Cognitive, affective & behavioral neuroscience

Authors' code: OSF j2enh (no license)

Status: code verified, 4 files readable, 1 match

[5855] Code ↔ Paper doi:10.64898/2026.03.23.712909 [paper, repository]

Auditory-motor interactions are sensitive to adaptation and learning on multiple timescales

Journal: bioRxiv (preprint)

Authors' code: haiqin-zhang/AuditoryMotorPiano (MIT)

Status: code verified, 31 files readable, 2 matches

[5856] Code ↔ Paper doi:10.64898/2026.03.24.713850 [paper, repository]

A cortical semantic space integrating fractions and integers

Journal: bioRxiv (preprint)

Authors' code: OSF 267s5 (no license)

Status: code verified, 3 files readable

[5857] Code ↔ Paper doi:10.64898/2026.03.24.713929 [paper, repository]

Distinct Disinhibitory Circuits Link Short-Term Adaptation to Familiarity and Reward Learning in Visual Cortex

Journal: bioRxiv (preprint)

Authors' code: lagnadoLab/CortexModel-Learning (Apache-2.0)

Status: code verified, 42 files readable

[5858] Code ↔ Paper doi:10.64898/2026.03.24.714079 [paper, repository]

Thalamocortical constraints on areal connectivity in the developing human brain

Journal: bioRxiv (preprint)

Authors' code: garedaba/prenatal-thalamus (no license)

Status: dead link

[5859] Code ↔ Paper doi:10.64898/2026.03.25.714146 [paper, repository]

Distinct signaling center and progenitor identity dynamics initiate human forebrain patterning

Journal: bioRxiv (preprint)

Authors' code: ctucl/pybridizer (no license)

Status: code verified, 5 files readable

[5860] Code ↔ Paper doi:10.64898/2026.03.25.714150 [paper, repository]

Functional connectome harmonics capture early brain organization and maturity in neonates

Journal: bioRxiv (preprint)

Authors' code: git.fmrib.ox.ac.uk/seanf/dhcp-neonatal-fmri-pipeline (no license)

Status: code verified

[5861] doi:10.7150/ijbs.127108 [paper, data]

Oligodendrocyte-secreted ERBB3 Mediates the Competitive Uptake of Copper Ions by Tumor Cells to Promote Brain Metastasis in Lung Cancer.

Journal: International journal of biological sciences

Status: data only, 1 dataset cited

Tuesday, 24 March 2026 (59 papers)

[5862] doi:10.1002/mrm.70361 [paper]

A Hybrid RF Coil for Whole-Brain Imaging in Non-Human Primates at 7 T.

Journal: Magnetic resonance in medicine

Status: code on request

[5863] doi:10.1007/s11307-026-02098-5 [paper]

Astrocyte Activation Persists after Recovery of Myelin and Motor Deficits in the Cuprizone Model: a Longitudinal PET and CNS Tissue Analysis Study.

Journal: Molecular imaging and biology

Status: code on request

[5864] Code ↔ Paper doi:10.1016/j.cnp.2026.03.005 [paper, repository]

A lightweight deep convolutional neural network for detecting artifacts in continuous EEG signals.

Journal: Clinical neurophysiology practice

Authors' code: evansnyanney/EEG-Artifact-Detection-DLCNN (MIT), Zenodo 19554507 (MIT)

Status: code verified, 64 files readable, 14 matches

[5865] Code ↔ Paper doi:10.1016/j.isci.2026.115443 [paper, repository]

Longitudinal changes in coagulation-fibrinolysis in patients with traumatic brain injury within seven days after injury.

Journal: iScience

Authors' code: datadryad.org/share/link_not_for_publication/sgsfugtaavnujuzck3x9dqoetem4rph0lzoav7grm0g (no license)

Status: code verified

[5866] Code ↔ Paper doi:10.1016/j.xpro.2026.104453 [paper, repository]

Protocol to design and implement scalable wireless network system for high-throughput, automated behavioral and circuit neuroscience in mice.

Journal: STAR protocols

Authors' code: support.arduino.cc/hc/en-us (no license), Zenodo 15388068 (CC-BY-4.0)

Status: code verified

[5867] Code ↔ Paper doi:10.1016/j.xpro.2026.104462 [paper, repository]

Protocol for whole-brain immunolabeling, clearing, and light-sheet imaging of C-FOS in the pigeon.

Journal: STAR protocols

Authors' code: ChristophKirst/ClearMap (GPL-3.0), KeaysLab/ClearingProtocol (no license), Zenodo 18406963 (CC-BY-4.0)

Status: code verified, 113 files readable, 3 matches

[5868] doi:10.1016/j.ynirp.2026.100338 [paper]

An interpretable cross-attentive multi-modal MRI fusion framework for schizophrenia identification.

Journal: Neuroimage. Reports

Status: code on request

[5869] Code ↔ Paper doi:10.1021/acsnano.5c16690 [paper, repository]

Digital Immunoassays for Sensitive Quantification of Blood Biomarkers Using Solid-State Nanopores.

Journal: ACS nano

Authors' code: shadowk29/CUSUM (GPL-3.0), Zenodo 595675 (other-open)

Status: code verified, 32 files readable

[5870] Code ↔ Paper doi:10.1038/s41380-026-03526-2 [paper, repository]

Neuroanatomy reflects individual variability in impulsivity in youth.

Journal: Molecular psychiatry

Authors' code: elvisha/neuroanat_impulsivity (no license)

Status: code verified, 2 files readable, 2 matches

[5871] doi:10.1038/s41380-026-03549-9 [paper, data]

Dynamic brain connectivity patterns induced by oxytocin: An fMRI Co-Activation pattern analysis study.

Journal: Molecular psychiatry

Status: data only, 1 dataset cited

[5872] Code ↔ Paper doi:10.1038/s41398-026-03948-0 [paper, repository]

Locus coeruleus modulation of neurophysiological sensory selectivity differs in autism and other mental health conditions.

Journal: Translational psychiatry

Authors' code: sega-studie/code (no license)

Status: code verified, 11 files readable, 11 matches

[5873] Code ↔ Paper doi:10.1038/s41398-026-03960-4 [paper, repository]

Prediction of depressive episodes based on clinical features, cognitive characteristics, inflammation-related proteins, and EEG data.

Journal: Translational psychiatry

Authors' code: Forworks0410/a-fash-of-insight (no license)

Status: dead link

[5874] Code ↔ Paper doi:10.1038/s41419-026-08576-6 [paper, repository]

HNRNPH1 drives glioblastoma progression by regulating the splicing of cell cycle genes.

Journal: Cell death & disease

Authors' code: tiroshlab/Spatial_Glioma (no license)

Status: code verified, 7 files readable, 2 matches

[5875] Code ↔ Paper doi:10.1038/s41467-026-70639-1 [paper, repository]

Anterior cingulate neurons combine outcome monitoring of past decisions with ongoing movement signals.

Journal: Nature communications

Authors' code: churchlandlab/chipmunk (no license), jcouto/fit_psychometric (GPL-3.0), churchlandlab/chiCa (no license), jcouto/labdata-tools (GPL-3.0), jcouto/wfield (GPL-3.0), LukasOesch/Oesch_et_al_Trial_History_ACC (GPL-3.0), Zenodo 18793084 (GPL-3.0)

Status: code verified, 217 files readable, 25 matches

[5876] doi:10.1038/s41467-026-70802-8 [paper]

Nanoscale exchange-bias magnetic tunnel junctions enabled memristive synapse and leaky-integrate-fire neuron for neuromorphic computing.

Journal: Nature communications

Status: code on request

[5877] Code ↔ Paper doi:10.1038/s41467-026-70962-7 [paper, repository]

Regulation of physical activity and energy expenditure through Phf6 in the medial preoptic area.

Journal: Nature communications

Authors' code: echo1318/MPOA_Phf6_Esr1 (no license), Zenodo 17972970 (CC-BY-4.0)

Status: code verified, 6 files readable, 3 matches

[5878] Code ↔ Paper doi:10.1038/s41597-026-07065-x [paper, repository]

"Dense Amygdala": Extensive Complex-valued Functional MRI of the Ventral and Medial Temporal Lobe during Passive Movie Watching in Three Individuals.

Journal: Scientific data

Authors' code: ukeles/VidFeatureXtract (BSD-3-Clause), adolphslab/mriphysio (MIT), jmtyszka/voxface (MIT)

Status: code verified, 44 files readable, 12 matches

[5879] Code ↔ Paper doi:10.1038/s41598-026-41754-2 [paper, repository]

Motor cortex activity during sleep and wake movements sharpens across development but continues to lag the red nucleus.

Journal: Scientific reports

Authors' code: jcdooley/Reid_Sattler_Dooley_2026 (no license)

Status: empty repository

[5880] doi:10.1038/s41598-026-44992-6 [paper, data]

TUBB2A related epilepsy: novel variants and genotype-phenotype correlation.

Journal: Scientific reports

Status: data only, 1 dataset cited

[5881] doi:10.1038/s41598-026-45376-6 [paper, data]

Brain network functional connectivity changes induced by music-induced analgesia in fibromyalgia patients.

Journal: Scientific reports

Status: data only, 1 dataset cited

[5882] doi:10.1038/s41698-026-01379-0 [paper, data]

Cellular landscape and diagnostic value of TROP2 in cerebrospinal fluid of lung adenocarcinoma leptomeningeal metastases.

Journal: NPJ precision oncology

Status: data only, 1 dataset cited

[5883] doi:10.1038/s41746-026-02543-3 [paper]

Digital physiological biomarkers predict within-person symptom changes in complex chronic illness.

Journal: NPJ digital medicine

Status: code on request

[5884] Code ↔ Paper doi:10.1038/s43856-026-01530-9 [paper, repository]

Thalamic organization differentially contributes to clinical conditions in epilepsy.

Journal: Communications medicine

Authors' code: OSF 49xde (no license), xiaosonghe/DynamicFunctionalConnectivity (no license), brain-intelligence-lab/functional_controllability (MIT), mickcrosse/PERMUTOOLS (BSD-3-Clause)

Status: code verified, 99 files readable, 8 matches

[5885] doi:10.1038/s44319-026-00735-2 [paper, data]

Transcription elongation can be sufficient, but is not necessary, to advance replication timing.

Journal: EMBO reports

Status: data only, 1 dataset cited

[5886] doi:10.1073/pnas.2513459123 [paper, data]

Biologically grounded on-chip model identifies selective topographic reorganization within hyperexcitable corticostriatal networks.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 1 dataset cited

[5887] doi:10.1073/pnas.2520352123 [paper, data]

GFAP<sup>+</sup> FOXF2<sup>+</sup> ependymal cells promote blood-brain barrier repair via DLL4-NOTCH signaling after neural injury.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 1 dataset cited

[5888] Code ↔ Paper doi:10.1073/pnas.2524661123 [paper, repository]

Convergent motifs of early olfactory processing are recapitulated by layer-wise efficient coding.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: VNMurthyLab/olfactory-ec (MIT), samuellab/larval-orn (MIT)

Status: code verified, 71 files readable, 3 matches

[5889] doi:10.1073/pnas.2537571123 [paper, data]

Cell type diversification and phenotype convergence underlying white fin-ornamentation of cyprinid fishes.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 2 datasets cited

[5890] Code ↔ Paper doi:10.1073/pnas.2602529123 [paper, repository]

Inorganic phosphate and the rapid mobilization of metabolic energy in neurons.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: supp:PMC13014856/pnas.2602529123.sd04.gz (no license)

Status: code verified

[5891] Code ↔ Paper doi:10.1093/braincomms/fcag106 [paper, repository]

Network-specific enhancement of global blood-oxygen-level-dependent signals and CSF coupling after language therapy in post-stroke aphasia.

Journal: Brain communications

Authors' code: Freebird811/Code_for_cal_gBOLD_CSF (no license)

Status: code verified, 1 file readable

[5892] doi:10.1093/braincomms/fcag107 [paper]

Juvenile myoclonic epilepsy heterogeneity uncovered: Z-mapped imaging endophenotypes of cortical and subcortical structures and their clinical, cognitive and psychiatric features.

Journal: Brain communications

Status: code on request

[5893] doi:10.1111/1471-0528.70225 [paper]

Impaired Hearing and Systolic Blood Pressure as Potential Markers of Cerebral Infarction After Eclampsia: A Cross-Sectional Study.

Journal: BJOG : an international journal of obstetrics and gynaecology

Status: code on request

[5894] doi:10.1111/jnp.70039 [paper]

Educational attainment mitigates hippocampal-related episodic memory decline in individuals at risk of Alzheimer's disease.

Journal: Journal of neuropsychology

Status: code on request

[5895] Code ↔ Paper doi:10.1117/1.bios.3.2.025003 [paper, repository]

Functional dual-slope frequency-domain near-infrared spectroscopy data interpreted with two- and three-layer models.

Journal: Biophotonics discovery

Authors' code: doit-lab/doit-public (no license)

Status: code verified, 199 files readable, 10 matches

[5896] Code ↔ Paper doi:10.1117/1.nph.13.2.025006 [paper, repository]

Choosing a skull clearing technique for chronic mesoscopic optical imaging in awake mice.

Journal: Neurophotonics

Authors' code: BUNPC/rsfcIOS (no license)

Status: code verified, 3 files readable

[5897] Code ↔ Paper doi:10.1162/imag.a.1163 [paper, repository]

Noise2Average: An iterative residual learning strategy for image denoising without clean data.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: webpages.tuni.fi/foi/gcf-bm3d (no license), birthlab/Noise2Average (no license)

Status: code verified, 5 files readable, 2 matches

[5898] doi:10.1162/imag.a.1179 [paper]

Function of the auditory cortex characterized by its intrinsic dynamic coactivation patterns estimated in individuals.

Journal: Imaging neuroscience (Cambridge, Mass.)

Status: code on request

[5899] doi:10.1186/s12916-026-04805-z [paper, data]

Digenic inheritance of mutations in SPG7 and AFG3L2 causes motor neuron and cerebellar disorders.

Journal: BMC medicine

Status: data only, 2 datasets cited

[5900] doi:10.1186/s13024-026-00940-6 [paper, data]

Molecular characterization of humanized APOE mouse models reveals source and genotype dependent differences.

Journal: Molecular neurodegeneration

Status: code on request, 4 datasets cited

[5901] doi:10.1371/journal.pbio.3003662 [paper, data]

A quantitative cell-based reporter links TDP-43 aggregation and dysfunction to define pathogenic mechanisms.

Journal: PLoS biology

Status: data only, 1 dataset cited

[5902] Code ↔ Paper doi:10.1371/journal.pbio.3003683 [paper, repository]

Immersive NREM2 dreaming preserves subjective sleep depth against declining sleep pressure.

Journal: PLoS biology

Authors' code: Zenodo 15372992 (CC-BY-4.0)

Status: code verified, 1 file readable

[5903] Code ↔ Paper doi:10.1371/journal.pcbi.1014106 [paper, repository]

A multimodal spatial atlas of transcriptomic, morphological, and electrophysiological cell type densities in the mouse brain.

Journal: PLoS computational biology

Authors' code: BlueBrain/Molsys-transcriptomic-atlas (Apache-2.0), cveraszto/TME-types (MIT), YannRoussel/probabilistic_mapping_extention (Apache-2.0), BlueBrain/ccfv3a-extended-atlas (Apache-2.0), registry.opendata.aws/bluebrain_opendata (no license), Zenodo 15176439 (CC-BY-4.0), YannRoussel/probabilistic_mapping_extension (Apache-2.0)

Status: code verified, 98 files readable, 14 matches

[5904] doi:10.1371/journal.pone.0344733 [paper, data]

Automatic pairing of real-world stimuli in younger and older adults: An event-related potential study.

Journal: PloS one

Status: data only, 1 dataset cited

[5905] doi:10.18632/aging.206363 [paper, data]

Age-specific relationship between the modulation of brain dynamics in response to task demands and bimanual performance.

Journal: Aging

Status: data only, 1 dataset cited

[5906] doi:10.21037/tcr-2025-1-2668 [paper]

Evaluation of triphenyl phosphate's pathogenic potential and molecular mechanisms in glioblastoma: an integrated network toxicology investigation employing multiple machine learning approaches.

Journal: Translational cancer research

Status: data only

[5907] doi:10.21203/rs.3.rs-9023856/v1 [paper, data]

Bridging Continuous and Discrete Models of the Anterior Temporal Lobe via Cortical Gradients

Journal: Research Square (preprint)

Status: code on request, 1 dataset cited

[5908] doi:10.21203/rs.3.rs-9043045/v2 [paper, data]

Early mitochondrial gene dysregulation precedes motor neuron degeneration in genomically humanised FUS mutant mice

Journal: Research Square (preprint)

Status: data only, 1 dataset cited

[5909] Code ↔ Paper doi:10.3389/fpsyg.2026.1691912 [paper, repository]

Gray matter volume correlates of resilience: a coordinate-based meta-analysis.

Journal: Frontiers in psychology

Authors' code: canlab/Canlab_MKDA_MetaAnalysis (GPL-2.0)

Status: code verified, 203 files readable, 2 matches

[5910] Code ↔ Paper doi:10.3389/frmbi.2026.1777385 [paper, repository]

Gut microbiota and its association with gastrointestinal symptoms and pharmacological treatments in a sibling-matched cohort with autism spectrum disorder.

Journal: Frontiers in microbiomes

Authors' code: fpenalba09 (no license)

Status: code verified

[5911] doi:10.3390/biomimetics11040224 [paper]

Resonance-Dependent Pattern Dynamics in a Neural Field for Spatial Coding.

Journal: Biomimetics (Basel, Switzerland)

Status: code on request

[5912] Code ↔ Paper doi:10.3390/brainsci16040347 [paper, repository]

In Silico-Identified miR-16-5p and miR-32-5p as a Shared Molecular Signature of Primary Gliomas and Parkinson's Disease: Plasma Levels Are Increased Only in Glioma Patients.

Journal: Brain sciences

Authors' code: wizbionet/wizbionet (MIT)

Status: code verified, 41 files readable, 1 match

[5913] doi:10.3390/cancers18071053 [paper, data]

Stimulated Raman Spectroscopy for Intraoperative Glioblastoma Diagnosis-A Complementary Tool to Frozen Section?

Journal: Cancers

Status: data only, 1 dataset cited

[5914] doi:10.3390/ijms27072958 [paper, data]

HP1β and H3K9me3 Regulate Olfactory Receptor Choice and Transcriptional Identity.

Journal: International journal of molecular sciences

Status: data only, 1 dataset cited

[5915] doi:10.3390/life16040536 [paper, data]

Reply to Pastore, E.P. Comment on "Rastogi et al. Brain Tumor Detection and Prediction in MRI Images Utilizing a Fine-Tuned Transfer Learning Model Integrated Within Deep Learning Frameworks. <i>Life</i> 2025, <i>15</i>, 327".

Journal: Life (Basel, Switzerland)

Status: data only, 1 dataset cited

[5916] Code ↔ Paper doi:10.34133/research.1143 [paper, repository]

Lifestyle and Transcriptional Signatures Associated with Ethnicity/Race-Related Variations in the Functional Connectome.

Journal: Research (Washington, D.C.)

Authors' code: thomasyeolab/cbig (MIT), Zenodo 7606653 (other-open), TianyiYanLab/Ethnicity_Race_Diversity (no license), pennlinc/spatiotemp_dev_plasticity (no license)

Status: code verified, 2,045 files readable, 14 matches

[5917] Code ↔ Paper doi:10.7554/elife.105391 [paper, repository]

Contributions of insula and superior temporal sulcus to interpersonal guilt and responsibility in social decisions.

Journal: eLife

Authors' code: canlab/neuroimaging_pattern_masks (GPL-3.0), bonnsocialneuroscienceunit/responsibilityexperiment (MIT)

Status: code verified, 400 files readable, 27 matches

[5918] Code ↔ Paper doi:10.7554/elife.95525 [paper, repository]

A deep learning pipeline for mapping in situ network-level neurovascular coupling in multi-photon fluorescence microscopy.

Journal: eLife

Authors' code: AICONSlab/novas3d (GPL-3.0)

Status: code verified, 10 files readable, 5 matches

[5919] Code ↔ Paper doi:10.7554/elife.97848 [paper, repository]

Visual information is broadcast among cortical areas in discrete channels.

Journal: eLife

Authors' code: yuyiyi/Broadcast_channel (GPL-3.0)

Status: code verified, 7 files readable, 4 matches

[5920] doi:10.7717/peerj.20951 [paper, data]

Behavioral and biological alterations following transplantation of ASD-associated gut microbiota in mice.

Journal: PeerJ

Status: data only, 1 dataset cited

Monday, 23 March 2026 (41 papers)

[5921] Code ↔ Paper doi:10.1002/advs.202516802 [paper, repository]

Structural Eigenmodes of the Brain to Improve the Source Localization of EEG: Application to Epileptiform Activity.

Journal: Advanced science (Weinheim, Baden-Wurttemberg, Germany)

Authors' code: Spokhim/sesl (BSD-3-Clause)

Status: code verified, 8 files readable, 14 matches

[5922] doi:10.1002/ptr.70303 [paper, data]

A Combined Colon Organoid-Sensory Neuron Model Reveals Epithelial Contribution to Moringin Efficacy Against Painful Inflammatory Bowel Disease.

Journal: Phytotherapy research : PTR

Status: data only, 1 dataset cited

[5923] doi:10.1007/s00429-026-03097-6 [paper, data]

Standardized methodology for assessing the presence, variants and area of the interthalamic adhesion using anatomical MRI (SNAP-IA): multicentric validation on 565 healthy individuals and multiple neurological disorders.

Journal: Brain structure & function

Status: data only, 1 dataset cited

[5924] doi:10.1007/s10238-026-02097-4 [paper, data]

MEG3 in glioma stem cells promotes glioblastoma angiogenesis through FUBP3-mediated VGF expression.

Journal: Clinical and experimental medicine

Status: data only, 1 dataset cited

[5925] Code ↔ Paper doi:10.1007/s12311-026-01983-7 [paper, repository]

Effective Connectivity Identifies Divergent Cerebro-Cerebellar Network Organization in Schizophrenia.

Journal: Cerebellum (London, England)

Authors' code: OSF g3bkf (no license)

Status: code verified, 2 files readable

[5926] doi:10.1016/j.isci.2026.115430 [paper, data]

Arp2/3 involvement in intercellular bridge membrane fluctuations and constriction during neural stem cell divisions.

Journal: iScience

Status: code on request, 1 dataset cited

[5927] Code ↔ Paper doi:10.1016/j.xpro.2026.104443 [paper, repository]

Protocol for identifying and comparing neuronal ensembles using different algorithms within a graphical user interface.

Journal: STAR protocols

Authors' code: rivelco/ENCORE (GPL-3.0), hanshuting/SVDEnsemble (MIT), tortlab/Cell-Assembly-Detection (no license), brincolab/NeuralEnsembles (no license), GoodhillLab/neural-assembly-detection (GPL-3.0), PerezOrtegaJ/Xsembles2P (GPL-3.0)

Status: code verified, 643 files readable, 2 matches

[5928] doi:10.1016/j.xpro.2026.104466 [paper]

Protocol for acute oxidative stress induction in third-instar Drosophila melanogaster larvae.

Journal: STAR protocols

Status: code on request

[5929] doi:10.1038/s41380-026-03527-1 [paper, data]

NADPH oxidase-1 suppression prolongs the antidepressant-like effect of ketamine.

Journal: Molecular psychiatry

Status: data only, 1 dataset cited

[5930] doi:10.1038/s41398-026-03951-5 [paper, data]

Metabotropic glutamate receptor 5 in the anterior cingulate cortex predicts individual differences in motor impulsivity but not in risky decision-making.

Journal: Translational psychiatry

Status: data only, 2 datasets cited

[5931] doi:10.1038/s41420-026-03035-9 [paper, data]

Deciphering the STAT3-PXN positive feedback loop in GBM, IDH-wildtype: transcriptional regulation and inhibition of YB-1 ubiquitination.

Journal: Cell death discovery

Status: code on request, 1 dataset cited

[5932] doi:10.1038/s41467-026-70798-1 [paper, data]

RFC4 drives temozolomide resistance in glioblastoma by activating STK38-BECN1-dependent autophagy.

Journal: Nature communications

Status: data only, 2 datasets cited

[5933] doi:10.1038/s41467-026-70987-y [paper, data]

Asymmetric histone inheritance regulates olfactory stem cell fates during regeneration.

Journal: Nature communications

Status: data only, 1 dataset cited

[5934] doi:10.1038/s41598-026-41007-2 [paper, data]

A hybrid pipeline for carotid artery segmentation using YOLOv11n and contour models.

Journal: Scientific reports

Status: data only, 3 datasets cited

[5935] doi:10.1038/s41598-026-43836-7 [paper, data]

Persistence of vestibular function in the absence of glutamatergic transmission from hair cells.

Journal: Scientific reports

Status: data only, 1 dataset cited

[5936] Code ↔ Paper doi:10.1038/s42003-026-09781-x [paper, repository]

When dreams feel real: the MÖBIUS model.

Journal: Communications biology

Authors' code: Zenodo 18620608 (MIT)

Status: code verified, 11 files readable

[5937] Code ↔ Paper doi:10.1038/s42003-026-09886-3 [paper, repository]

Cortical gradient compression links cognition and transcriptomic signatures in primary angle-closure glaucoma.

Journal: Communications biology

Authors' code: OSF 5ytgn (no license)

Status: code verified

[5938] Code ↔ Paper doi:10.1038/s42003-026-09887-2 [paper, repository]

Visualizing cortical laminar architecture in the living human brain using next-generation ultra-high-gradient diffusion MRI.

Journal: Communications biology

Authors' code: Connectome20/diffusion_preproc_C2 (no license), Connectome20/Laminar-SANDI (MIT)

Status: code verified, 33 files readable, 14 matches

[5939] doi:10.1038/s42003-026-09901-7 [paper]

Inhibiting glucocorticoid receptors enhances adult spinal cord neural stem cell activity and improves outcomes in spinal cord injury.

Journal: Communications biology

Status: data only

[5940] Code ↔ Paper doi:10.1038/s43856-026-01394-z [paper, repository]

Deep learning using electroencephalogram (EEG) data for diagnosing and predicting SSRI response in major depressive disorder.

Journal: Communications medicine

Authors' code: canbind.ca/datareleasecbn01 (no license)

Status: dead link

[5941] Code ↔ Paper doi:10.1038/s44172-026-00643-2 [paper, repository]

Synapse-inspired energy networks: a neuromorphic approach to microgrid protection without communication links.

Journal: Communications engineering

Authors' code: saurabhprabhakar/Neuromorphic_Protection (no license)

Status: code verified, 9 files readable

[5942] Code ↔ Paper doi:10.1038/s44303-026-00141-2 [paper, repository]

pan-ASLM: Axially Swept Light Sheet Microscopy for Fast and High-Resolution Imaging of Expanded Samples.

Journal: Npj imaging

Authors' code: lasselpk/pan-ASLM (no license)

Status: code verified, 7 files readable

[5943] Code ↔ Paper doi:10.1038/s44318-026-00752-w [paper, repository]

Enhanced P-TEFb activity compromises dentate gyrus neurogenesis in mice.

Journal: The EMBO journal

Authors' code: ketone08/Larp7_KO_mouse (no license)

Status: code verified, 5 files readable, 1 match

[5944] doi:10.1073/pnas.2427242123 [paper, data]

Unveiling the developmental and tumor-suppressive roles of the p53 variant p53psi.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 1 dataset cited

[5945] Code ↔ Paper doi:10.1107/s1600577526001402 [paper, repository]

Critical point drying of brain tissue for X-ray phase-contrast imaging.

Journal: Journal of synchrotron radiation

Authors' code: safekhan/CPDtissuesXray (MIT), Zenodo 17035301 (MIT)

Status: code verified, 12 files readable

[5946] doi:10.1117/1.nph.13.2.025005 [paper]

Depth-sensitive cerebral blood flow and low-frequency oscillations for consciousness assessment using time-domain diffuse correlation spectroscopy.

Journal: Neurophotonics

Status: code on request

[5947] Code ↔ Paper doi:10.1162/imag.a.1170 [paper, repository]

A meta-analysis of neural systems underlying delay discounting: Implications for transdiagnostic research.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: OSF xvt5k (no license)

Status: code verified

[5948] doi:10.1162/imag.a.1176 [paper, data]

Neural dynamics of visuospatial endogenous attention: Event-related optical signal evidence from posterior brain areas.

Journal: Imaging neuroscience (Cambridge, Mass.)

Status: data only, 1 dataset cited

[5949] Code ↔ Paper doi:10.1177/03000605261422820 [paper, repository]

Brain tumor detection on magnetic resonance imaging scans using the artificial intelligence-based You Only Look Once algorithm.

Journal: The Journal of international medical research

Authors' code: weilaibot/my_Brain_tumor (no license)

Status: code verified, 845 files readable, 11 matches

[5950] doi:10.1186/s12916-026-04806-y [paper]

Clustering depression subgroups based on dorsolateral prefrontal-subgenual anterior cingulate cortex peak functional connectivity reveals different symptom profiles and TMS treatment outcomes.

Journal: BMC medicine

Status: code on request

[5951] Code ↔ Paper doi:10.1186/s13059-026-04041-x [paper, repository]

Co-occurrence of rare variants implicates gene pairs in cytoskeletal pathways and is associated with increased severity in autism spectrum disorder.

Journal: Genome biology

Authors' code: Leehyeji789/Co-occurrence-analysis-in-ASD (MIT), Zenodo 17695517 (MIT)

Status: code verified, 40 files readable, 32 matches

[5952] Code ↔ Paper doi:10.1371/journal.pcbi.1014035 [paper, repository]

Sensitivity analysis enlightens effects of connectivity in a Neural Mass Model under Control-Target mode.

Journal: PLoS computational biology

Authors' code: supp:PMC13008111/pcbi.1014035.s003.zip (no license)

Status: code verified, 12 files readable

[5953] Code ↔ Paper doi:10.1371/journal.pone.0343776 [paper, repository]

Investigating the effects of continuous theta-burst stimulation over the posterior parietal cortex on holistic processing of composite faces: evidence from cognitive modeling.

Journal: PloS one

Authors' code: OSF d96pg (no license)

Status: code verified, 33 files readable, 2 matches

[5954] Code ↔ Paper doi:10.21203/rs.3.rs-8687892/v1 [paper, repository]

Brain network dynamics determine tau presence while regional vulnerability governs tau load in Alzheimer’s disease

Journal: Research Square (preprint)

Authors' code: netneurolab/hansenmanynetworks (no license), DeMONLab-BioFINDER/Xiao_Tau_simulation_SIR (no license), ucl-pond (no license)

Status: code verified, 15 files readable, 4 matches

[5955] doi:10.3389/fnagi.2026.1620991 [paper, data]

Systemic proteomic and organ aging signatures associated with plasma Aβ oligomerization in a Korean cohort: a cross-sectional study.

Journal: Frontiers in aging neuroscience

Status: data only, 1 dataset cited

[5956] doi:10.3389/fnsyn.2026.1730181 [paper, data]

Patterned pre-sensory spontaneous activity drives the structural refinement of developing cochlear ribbon synapses.

Journal: Frontiers in synaptic neuroscience

Status: data only, 1 dataset cited

[5957] doi:10.3390/bioengineering13030370 [paper, data]

Cross-Modal Alignment and Rectified Flow-Based Latent Representation Synthesis for Enhanced Speech-Driven Alzheimer's Disease Detection.

Journal: Bioengineering (Basel, Switzerland)

Status: data only, 1 dataset cited

[5958] Code ↔ Paper doi:10.3390/ijms27062900 [paper, repository]

Locus- and Gene-Level Insights into the Inverse Association Between Alzheimer's Disease and Cancer.

Journal: International journal of molecular sciences

Authors' code: bulik/ldsc (GPL-3.0)

Status: code verified, 27 files readable, 1 match

[5959] Code ↔ Paper doi:10.64898/2026.03.17.26346081 [paper, repository]

Multiple system atrophy is associated with brain somatic mutations in clonal hematopoiesis genes

Journal: medRxiv (preprint)

Authors' code: b-thompson-99/XT-HS2-Small-Somatic (no license)

Status: code verified, 18 files readable, 8 matches

[5960] Code ↔ Paper doi:10.7554/elife.104677 [paper, repository]

Control of innate olfactory valence by segregated cortical amygdala circuits.

Journal: eLife

Authors' code: Zenodo 12601490 (MIT)

Status: code verified

[5961] Code ↔ Paper doi:10.7554/elife.108995 [paper, repository]

Dynamic regulation of mRNA acetylation at synapses by spatial memory in mouse hippocampus.

Journal: eLife

Authors' code: YinDMlab/ac4CRIP-seq-analysis (MIT)

Status: empty repository, 2 files readable

Sunday, 22 March 2026 (4 papers)

[5962] Code ↔ Paper doi:10.1016/j.celrep.2026.117146 [paper, repository]

The insertion of an ATTTC repeat in an Alu element hyperactivates a neurodevelopmental enhancer in spinocerebellar ataxia type 37.

Journal: Cell reports

Authors' code: Zenodo 14963259 (CC-BY-4.0)

Status: code verified

[5963] Code ↔ Paper doi:10.1038/s41598-026-44963-x [paper, repository]

The explainability of radiomic-based machine learning models for brain glioma grading on amide proton transfer-weighted images.

Journal: Scientific reports

Authors' code: gitee.com/aaasss0636/xai (BSD-3-Clause)

Status: code verified, 7 files readable, 1 match

[5964] Code ↔ Paper doi:10.1093/braincomms/fcag105 [paper, repository]

Unbiased data-driven analysis of five amyloid-beta peptides for biomarker investigations in familial Alzheimer's disease.

Journal: Brain communications

Authors' code: isaac-6/biodiscvr (GPL-3.0)

Status: code verified, 19 files readable, 1 match

[5965] Code ↔ Paper doi:10.64898/2026.03.20.713139 [paper, repository]

Dissociable contributions of cortical thickness and surface area to cognitive ageing: evidence from multiple longitudinal cohorts

Journal: bioRxiv (preprint)

Authors' code: InaDemetriou/GrayMatter_THK_SA_Dissociation (no license)

Status: code verified, 7 files readable, 1 match

Saturday, 21 March 2026 (12 papers)

[5966] Code ↔ Paper doi:10.1007/s00018-026-06177-2 [paper, repository]

Schizophrenia risk variants modulate transcription factor binding and gene expression in cortical cell types.

Journal: Cellular and molecular life sciences : CMLS

Authors' code: github.molgen.mpg.de/mpip/tfbinding_corticalcells (no license)

Status: code verified

[5967] Code ↔ Paper doi:10.1007/s10055-026-01343-0 [paper, repository]

Beyond flatland: naturalistic three-dimensional stimuli and visual working memory processing.

Journal: Virtual reality

Authors' code: OSF hkuys (no license), Giladsc/Object-Change-Detection-VR (MIT)

Status: code verified, 4 files readable

[5968] Code ↔ Paper doi:10.1007/s11682-026-01128-8 [paper, repository]

Brain regions beyond the visual cortex are relevant to subjective time prediction from fMRI salient events in a visual naturalistic context.

Journal: Brain imaging and behavior

Authors' code: inbrainlab/time_perception_fMRI (no license)

Status: code verified, 14 files readable, 3 matches

[5969] doi:10.1016/j.isci.2026.115446 [paper]

C2CD5 in noradrenergic neurons regulates thermogenesis and lipid homeostasis via norepinephrine secretion.

Journal: iScience

Status: code on request

[5970] Code ↔ Paper doi:10.1016/j.isci.2026.115455 [paper, repository]

Slow wave canonical activity deviation concept: Toward a slow wave-based EEG-fMRI reference map for health-associated network function.

Journal: iScience

Authors' code: Mensen/swa-matlab (no license), HALFpipe/HALFpipe (GPL-3.0)

Status: code verified, 518 files readable, 9 matches

[5971] Code ↔ Paper doi:10.1016/j.isci.2026.115458 [paper, repository]

Sustained activity of human substantia nigra neurons reflect prior rewards.

Journal: iScience

Authors' code: zarghonai/single_unit (no license)

Status: code verified, 47 files readable, 10 matches

[5972] doi:10.1038/s41598-025-32646-y [paper, data]

Wearable optomyography enables continuous neuroprosthetic control.

Journal: Scientific reports

Status: data only, 1 dataset cited

[5973] Code ↔ Paper doi:10.1038/s41598-026-41995-1 [paper, repository]

A novel spatiotemporal decomposition and identification of sparse equations for human brain deformation.

Journal: Scientific reports

Authors' code: amir-arani/TASC-DMD (MIT)

Status: code verified, 9 files readable, 3 matches

[5974] Code ↔ Paper doi:10.1038/s41598-026-44858-x [paper, repository]

Memory efficient training for 3D brain image registration networks using PatchMorph.

Journal: Scientific reports

Authors' code: cwmok/LapIRN (MIT), MungoMeng/Registration-NICE-Net (MIT), MungoMeng/Registration-NICE-Trans (GPL-3.0), BrainImageAnalysis/INRsRegExp (MIT), BrainImageAnalysis/PatchMorph (Apache-2.0)

Status: code verified, 58 files readable, 2 matches

[5975] Code ↔ Paper doi:10.1186/s13014-026-02825-w [paper, repository]

Prediction of local failure after stereotactic radiotherapy in melanoma brain metastases using ensemble learning on clinical, dosimetric, and radiomic data.

Journal: Radiation oncology (London, England)

Authors' code: ToFec/RadiomicsMM (MIT)

Status: code verified, 16 files readable, 2 matches

[5976] doi:10.1186/s13287-026-04965-y [paper, data]

Targeting p75NTR activity alleviates the neurotoxic effect of high glucose on iPSC-derived dopaminergic neurons.

Journal: Stem cell research & therapy

Status: data only, 6 datasets cited

[5977] Code ↔ Paper doi:10.3390/ijms27062849 [paper, repository]

Single-Cell Gene Module Inference Reveals Alternative Polyadenylation Dynamics Associated with Autism.

Journal: International journal of molecular sciences

Authors' code: BMILAB/ASD-module (no license)

Status: code verified, 13 files readable, 10 matches

Friday, 20 March 2026 (50 papers)

[5978] doi:10.1007/s12028-026-02482-7 [paper, data]

A Longitudinal Imaging and Clinical Data Workflow Identifies Potential Time-Dependent Risk Factors for Post-Subarachnoid Hemorrhage Epilepsy.

Journal: Neurocritical care

Status: data only, 1 dataset cited

[5979] doi:10.1016/j.celrep.2026.117077 [paper]

An accessory orthosteric ligand binding site in the (α3)<sub>3</sub>(β4)<sub>2</sub> nicotinic acetylcholine receptor regulates channel activation.

Journal: Cell reports

Status: code on request

[5980] doi:10.1016/j.celrep.2026.117114 [paper]

Interhemispheric CA1 projections to the subiculum support spatial cognition and are affected in a mouse model of the 22q11.2 deletion syndrome.

Journal: Cell reports

Status: code on request

[5981] doi:10.1016/j.celrep.2026.117115 [paper]

Distinct synaptic mechanisms underlie NRXN1 variant and disorder background-dependent phenotypes in iPSC-derived neurons.

Journal: Cell reports

Status: code on request

[5982] doi:10.1016/j.celrep.2026.117133 [paper]

Time of day alters olfactory bulb immune state with ramifications for intranasal inflammatory challenge.

Journal: Cell reports

Status: code on request

[5983] Code ↔ Paper doi:10.1016/j.isci.2026.115429 [paper, repository]

Spike dynamics in primate lateral prefrontal cortex during working memory and decision-making: A fractal analysis.

Journal: iScience

Authors' code: crcns.org/data-sets/pfc (no license)

Status: code verified

[5984] doi:10.1016/j.isci.2026.115432 [paper]

Much higher covariation with foveation timing by superior colliculus than primary visual cortical neuronal activity.

Journal: iScience

Status: code on request

[5985] Code ↔ Paper doi:10.1016/j.nicl.2026.103987 [paper, repository]

Remote cortical degeneration related to structural connectivity following recent small subcortical infarcts.

Journal: NeuroImage. Clinical

Authors' code: kjamison/nemo (MIT), LuuuXG/cvdproc (MIT)

Status: code verified, 509 files readable, 7 matches

[5986] doi:10.1038/s41378-026-01192-6 [paper]

Nanophotonic neural probes for in vivo photostimulation, electrophysiology, and microfluidic delivery.

Journal: Microsystems & nanoengineering

Status: code on request

[5987] Code ↔ Paper doi:10.1038/s41398-026-03956-0 [paper, repository]

Normative age-related structural brain deviations underlying psychopathology, cognitive impairment and neurological soft signs in schizophrenia spectrum disorders.

Journal: Translational psychiatry

Authors' code: amarquand/PCNtoolkit (GPL-3.0)

Status: code verified, 126 files readable, 2 matches

[5988] Code ↔ Paper doi:10.1038/s41467-026-68307-5 [paper, repository]

Distinct roles of cortical layer 5 subtypes in associative learning.

Journal: Nature communications

Authors' code: Zenodo 17720603 (CC-BY-4.0)

Status: code verified, 8 files readable, 3 matches

[5989] Code ↔ Paper doi:10.1038/s41467-026-70268-8 [paper, repository]

Parvalbumin-positive neurons in the medial septum participate in the formation of hippocampal-dependent spatial memory.

Journal: Nature communications

Authors' code: evelynzyw/evelyn_PV_analysis (no license)

Status: code verified, 9 files readable, 6 matches

[5990] Code ↔ Paper doi:10.1038/s41467-026-70537-6 [paper, repository]

Aligned representation of visual and tactile motion directions in hMT+/V5 and fronto-parietal regions.

Journal: Nature communications

Authors' code: iqrashahzad14/visualLocalizer (MIT), iqrashahzad14/tactileLocalizer (no license), iqrashahzad14/mtMstLocalizer (MIT), iqrashahzad14/fMRI_FoR_expt (GPL-3.0), iqrashahzad14/visTac_fMRI_paper (no license), Zenodo 18225976 (CC-BY-4.0)

Status: code verified, 304 files readable, 19 matches

[5991] doi:10.1038/s41467-026-70640-8 [paper, data]

Functional and structural basis of a negative allostery within GABA<sub>B</sub> hetero-tetramers.

Journal: Nature communications

Status: data only, 1 dataset cited

[5992] Code ↔ Paper doi:10.1038/s41598-026-43389-9 [paper, repository]

Threat and blame frames in political rhetoric about societal issues lead to neural and political polarization.

Journal: Scientific reports

Authors' code: elisavanderplas/PoliticalAttitudes_fMRI (no license)

Status: code verified, 3 files readable, 4 matches

[5993] Code ↔ Paper doi:10.1038/s41598-026-44588-0 [paper, repository]

Visualization and simulation of full-scale point-neuron circuits via the Neural Circuit Visualizer web platform.

Journal: Scientific reports

Authors' code: modeldb:267531 (no license), cnr-ibf-pa/NeuralCircuitVisualizer (no license)

Status: code verified, 29 files readable, 6 matches

[5994] Code ↔ Paper doi:10.1038/s41598-026-44853-2 [paper, repository]

Identification and classification of repeated whistle types from free-ranging rough-toothed dolphins (Steno bredanensis).

Journal: Scientific reports

Authors' code: Zenodo 7713614 (LGPL-3.0), dolphin-acoustics-vip/artwarp (LGPL-3.0)

Status: code verified, 82 files readable, 2 matches

[5995] doi:10.1038/s41598-026-44859-w [paper, data]

Preliminary efficacy of cognitive multisensory rehabilitation for neuropathic pain in chronic spinal cord injury: a phase I randomized controlled trial.

Journal: Scientific reports

Status: data only, 1 dataset cited

[5996] doi:10.1038/s42003-026-09855-w [paper, data]

Early life chronic stress-disrupted activity of the dorsal raphe nucleus selectively drives behavioral impairments.

Journal: Communications biology

Status: data only, 1 dataset cited

[5997] Code ↔ Paper doi:10.1038/s42003-026-09865-8 [paper, repository]

Linguistic structure and language familiarity sharpen phoneme encoding in the brain.

Journal: Communications biology

Authors' code: tezcanf/Phoneme_encoding_sentences_words_syllables (no license)

Status: code verified, 43 files readable, 5 matches

[5998] Code ↔ Paper doi:10.1038/s42003-026-09884-5 [paper, repository]

Neuronal ARHGAP8 controls synapse structure and AMPA receptor-mediated synaptic transmission.

Journal: Communications biology

Authors' code: Zenodo 18776119 (CC-BY-4.0)

Status: code verified

[5999] doi:10.1038/s44321-026-00397-6 [paper, data]

Blocking microglial reactivity via purinergic receptors prevents subacute cognitive deficits after TIA.

Journal: EMBO molecular medicine

Status: data only, 2 datasets cited

[6000] doi:10.1038/s44321-026-00402-y [paper]

Bazedoxifene reverses sexually dimorphic autistic-like abnormalities in biallelic MDGA1-mutant mice.

Journal: EMBO molecular medicine

Status: data only

[6001] doi:10.1073/pnas.2516929123 [paper, repository]

Task-evoked functional connectivity exhibits novel and strengthened relationships with executive function relative to the resting state.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: OSF 7xn4f (no license), ABCD-STUDY/abcd-hcp-pipeline (BSD-3-Clause), mackenziemitchell/TaskFCManuscript (no license), OSF psv5m (no license)

Status: code verified, 23 files readable, 15 matches

[6002] doi:10.1126/sciadv.aea8321 [paper, data]

Brain neuronal CG9593/ANGPTL4 activation mediates paternally acquired motor disorders.

Journal: Science advances

Status: data only, 1 dataset cited

[6003] doi:10.1136/jmg-2025-111193 [paper, repository]

How do clinician and parent-reported data differ? An analysis of similarity and difference in the datasets from a cross-syndrome genetics cohort study (GenROC).

Journal: Journal of medical genetics

Authors' code: JGIBristol/GenROC_Public (MIT)

Status: code verified, 4 files readable

[6004] doi:10.1161/strokeaha.125.052941 [paper, data]

Predicting Outcome After Newborn Stroke: A Lesion Network Mapping Study Leveraging Large-Scale Data.

Journal: Stroke

Status: data only, 1 dataset cited

[6005] doi:10.1162/imag.a.1166 [paper, repository]

Effects of auditory stimuli during exhaustive exercise on cerebral oxygenation and psychophysical responses.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: Zenodo 6261358 (CC-BY-4.0)

Status: code verified, 23 files readable, 5 matches

[6006] doi:10.1162/imag.a.1168 [paper, repository]

RapidParc: A global-context transformer for parallel, accurate, and lesion-robust tractogram parcellation.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: MedVisBonn/RapidParc (BSD-3-Clause)

Status: code verified, 19 files readable, 8 matches

[6007] doi:10.1162/imag.a.1171 [paper]

Spatiotemporal characterisation of information coding in the multiple demand network.

Journal: Imaging neuroscience (Cambridge, Mass.)

Status: code on request

[6008] doi:10.1162/imag.a.1172 [paper, repository]

Neurophysiological screening of individual variability for robust decoding in c-VEP-based BCI.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: sebVelut/Predicting-and-overcoming-inter-participant-variability-in-c-VEP-based-BCI (no license), Zenodo 13838406 (CC-BY-4.0)

Status: code verified, 18 files readable, 10 matches

[6009] doi:10.1162/netn.a.533 [paper, repository]

An entropic measure of diverse specialization highlights multifunctional neurons in annotated connectomes.

Journal: Network neuroscience (Cambridge, Mass.)

Authors' code: sungsushi/spec_div (MIT), Zenodo 15052465 (CC-BY-4.0)

Status: code verified, 14 files readable, 2 matches

[6010] doi:10.1162/netn.a.534 [paper, repository]

The motion sensitivity and predictive utility of different estimates of interregional functional coupling in resting-state functional MRI.

Journal: Network neuroscience (Cambridge, Mass.)

Authors' code: kanepav0002/Coupling-Estimation-Prediction (no license)

Status: code verified, 43 files readable, 17 matches

[6011] doi:10.1162/netn.a.535 [paper, repository]

Disrupted intrathalamic and thalamocortical structural covariance networks in posttraumatic stress disorder.

Journal: Network neuroscience (Cambridge, Mass.)

Authors' code: njsteele01/Thalamic_SCN_analysis (no license)

Status: code verified, 2 files readable, 5 matches

[6012] doi:10.1186/s12967-026-08027-y [paper]

Dysfunctional astrocytes regulate excitatory neurons via cell adhesion and vascular lesions in patients with Alzheimer's disease.

Journal: Journal of translational medicine

Status: data only

[6013] doi:10.1186/s40478-026-02274-2 [paper, data]

CX3CL1/CX3CR1 axis dysregulation contributes to epileptogenic mechanisms in focal cortical dysplasia.

Journal: Acta neuropathologica communications

Status: data only, 1 dataset cited

[6014] doi:10.1364/boe.596635 [paper, repository]

Qualitative and quantitative assessment of <i>ex vivo</i> human brain tumors using quantitative oblique back-illumination microscopy (qOBM).

Journal: Biomedical optics express

Authors' code: Zenodo 18202546 (CC-BY-4.0)

Status: code verified, 6 files readable, 3 matches

[6015] doi:10.1371/journal.pcbi.1013413 [paper, repository]

A coupling model of transcranial magnetic stimulation induced electric fields to neural state variables.

Journal: PLoS computational biology

Authors' code: aaron-h-miller/TMS-Coupling-Model (GPL-3.0)

Status: code verified, 448 files readable, 20 matches

[6016] doi:10.1371/journal.pcbi.1014037 [paper, repository]

Dense and distributed neuropeptide network in the nerve net of Hydra vulgaris.

Journal: PLoS computational biology

Authors' code: fteufel/alphafold-peptide-receptors (no license)

Status: code verified, 8 files readable, 2 matches

[6017] doi:10.1371/journal.pcbi.1014060 [paper, repository]

Bayesian inference of RNA velocity incorporating timepoints, lineage bifurcations, and count data.

Journal: PLoS computational biology

Authors' code: welch-lab/VeloVAE (BSD-3-Clause)

Status: code verified, 89 files readable

[6018] doi:10.1371/journal.pcbi.1014093 [paper, repository]

Contextual inference through flexible integration of environmental features and behavioural outcomes.

Journal: PLoS computational biology

Authors' code: JesPass/Contextual_RL (MIT), Zenodo 18401734 (MIT)

Status: code verified, 4 files readable, 4 matches

[6019] doi:10.1371/journal.pone.0334389 [paper, data]

Exploring brain lobe-specific insights in an explainable framework for EEG-based schizophrenia detection.

Journal: PloS one

Status: data only, 1 dataset cited

[6020] doi:10.1371/journal.pone.0336764 [paper, data]

Research on epilepsy detection and recognition based on the combination of time frequency transform and deep learning model.

Journal: PloS one

Status: data only, 1 dataset cited

[6021] doi:10.21203/rs.3.rs-9083455/v1 [paper, repository]

3D atomic structure reveals evolution of prions in templated amplification in vitro

Journal: Research Square (preprint)

Authors' code: ioannachatzitheodosiou/Optosplit_Analysis (no license)

Status: code verified, 5 files readable, 1 match

[6022] doi:10.3389/fmed.2026.1778348 [paper, data]

The microbiota-gut-brain-epigenome axis as a novel therapeutic target for decoding postpartum depression.

Journal: Frontiers in medicine

Status: data only, 1 dataset cited

[6023] doi:10.3389/fnmol.2026.1767983 [paper, data]

Integrated genetic analysis reveals synaptic m<sup>6</sup>A enrichment in high-risk autism genes.

Journal: Frontiers in molecular neuroscience

Status: data only, 1 dataset cited

[6024] doi:10.3390/biom16030468 [paper, data]

Integrative Multi-Analysis Identifies METTL3-Regulated FGF19 and H6PD as Candidate Targets in Diabetic Cognitive Impairment.

Journal: Biomolecules

Status: data only, 1 dataset cited

[6025] doi:10.3758/s13415-025-01388-9 [paper, repository]

A causal and dissociable role for the right inferior frontal gyrus in empathy for physical and social pain.

Journal: Cognitive, affective & behavioral neuroscience

Authors' code: OSF 86sxf (no license)

Status: code found, still to be checked

[6026] doi:10.64898/2026.03.20.713227 [paper, repository]

Multi-Task Batteries for Precision Functional Mapping

Journal: bioRxiv (preprint)

Authors' code: DiedrichsenLab/MultiTaskBattery (MIT), DiedrichsenLab/Functional_Fusion (no license), DiedrichsenLab/OptimalBattery (MIT)

Status: code verified, 176 files readable, 13 matches

[6027] doi:10.7717/peerj.20959 [paper, repository]

Visual opponent mechanisms and spectral responses in non-primate vertebrates: taxonomic distribution, sampling, and classification.

Journal: PeerJ

Authors' code: OSF cm689 (no license)

Status: code verified, 3 files readable, 4 matches

Thursday, 19 March 2026 (39 papers, 21 on this page)

[6028] doi:10.1002/advs.202517234 [paper, repository]

Linearizing and Forecasting: A Reservoir Computing Route to Digital Twins of the Brain.

Journal: Advanced science (Weinheim, Baden-Wurttemberg, Germany)

Authors' code: gdianto/LinearRNNforFMRIdigitaltwins (MIT)

Status: code verified, 27 files readable, 2 matches

[6029] doi:10.1002/mds.70274 [paper]

Diagnostic Value of Glycocalyx Shedding in Blood for Differentiating between Parkinson's Disease and Multiple System Atrophy.

Journal: Movement disorders : official journal of the Movement Disorder Society

Status: code on request

[6030] doi:10.1007/s10827-026-00929-6 [paper, repository]

Inhibitory-stabilization is sufficient for history-dependent computation in a randomly connected attractor network.

Journal: Journal of computational neuroscience

Authors' code: Zenodo 17470740 (no license)

Status: dead link

[6031] doi:10.1007/s42113-026-00264-0 [paper, repository]

Can Systematic Drift Rate Variability Replace Random Variability in the Diffusion Decision Model?

Journal: Computational brain & behavior

Authors' code: OSF r69ws (no license)

Status: code verified, 9 files readable, 6 matches

[6032] doi:10.1016/j.isci.2026.115403 [paper, data]

Molecularly distinct subtypes of <i>Lhx6</i>-positive neurons of the zona incerta differentially regulate sleep pressure and recovery sleep.

Journal: iScience

Status: code on request, 1 dataset cited

[6033] doi:10.1016/j.jneumeth.2026.110749 [paper, repository]

Evaluating linear model frameworks for directed predictive influence estimation from hypothalamic calcium imaging.

Journal: Journal of neuroscience methods

Authors' code: Zenodo 18102530 (GPL-3.0), oprisans/glm (GPL-3.0)

Status: code verified, 48 files readable, 7 matches

[6034] doi:10.1016/j.stemcr.2026.102855 [paper, data]

Diversity of cortical progenitors directs neuronal layer formation and regional glial patterning.

Journal: Stem cell reports

Status: code on request, 1 dataset cited

[6035] doi:10.1016/j.ynstr.2026.100795 [paper, data]

Postpartum adversity in rats creates a hypervigilant maternal state through selective salience-circuit recruitment.

Journal: Neurobiology of stress

Status: data only, 1 dataset cited

[6036] doi:10.1038/s41398-026-03958-y [paper]

Neurostructural alterations, trait impulsivity, and genetic architecture in individuals with methamphetamine dependence: a multimodal imaging-genetics study.

Journal: Translational psychiatry

Status: code on request

[6037] doi:10.1038/s41398-026-03962-2 [paper, repository]

White matter microstructure differences between 15q11.2 copy number variation carriers and non-carriers in mid-to-late life.

Journal: Translational psychiatry

Authors' code: ekaden/smt (BSD-2-Clause), reisert/baydiff (BSD-2-Clause), MaxKorbmacher/15q11.2WhiteMatterMicrostructure (no license)

Status: code verified, 67 files readable, 5 matches

[6038] doi:10.1038/s41398-026-03968-w [paper, repository]

Data-driven schizophrenia subtyping via brain atrophy trajectories and functional connectivity.

Journal: Translational psychiatry

Authors' code: ucl-pond/pySuStaIn (MIT)

Status: code verified, 19 files readable

[6039] doi:10.1038/s41467-026-70660-4 [paper, repository]

Dual-axis myelination covariance drives the functional connectivity emergence during infancy.

Journal: Nature communications

Authors' code: MIPLabCH/myPLS (GPL-2.0), DiedrichsenLab/fs_LR_32 (no license), washingtonuniversity/hcppipelines (no license), BioMedIA/dhcp-structural-pipeline (Apache-2.0), ecr05/dhcp_template_alignment (MIT), metascape.org/gp/index.html (no license), NI-Connectome/Myelination-function-coupling (no license), Zenodo 18595951 (CC-BY-4.0), ni-connectome/myelination-function-coupling-for-dhcp (no license)

Status: code verified, 1,436 files readable, 16 matches

[6040] doi:10.1038/s41467-026-70707-6 [paper]

Divergent white matter metabolic signature patterns indicate impending cognitive decline in aging and dementia.

Journal: Nature communications

Status: code on request

[6041] doi:10.1038/s41467-026-70756-x [paper, data]

IVNS1ABP mutation drives cellular senescence in newly identified progeroid neuropathy.

Journal: Nature communications

Status: data only, 1 dataset cited

[6042] doi:10.1038/s41467-026-70771-y [paper, data]

Low-intensity focused ultrasound-activated piezoelectric gel bandage for diabetic wound repair and neuropathic pain relief.

Journal: Nature communications

Status: data only, 1 dataset cited

[6043] doi:10.1038/s41467-026-70840-2 [paper, repository]

Membrane interfacial potential governs surface condensation and fibrillation of α-Synuclein in neurons.

Journal: Nature communications

Authors' code: Zenodo 18759321 (MIT)

Status: code verified, 1 file readable, 2 matches

[6044] doi:10.1038/s41467-026-70920-3 [paper, repository]

Intrinsic stabilization of synaptic plasticity improves learning and robustness in artificial neural networks.

Journal: Nature communications

Authors' code: figshare 31146457 (Apache-2.0)

Status: code verified, 10 files readable

[6045] doi:10.1038/s41531-026-01304-z [paper]

Cortical and basal ganglia beta oscillations and frequency-dependent DBS effects in the A53T Parkinson's disease rat model.

Journal: NPJ Parkinson's disease

Status: code on request

[6046] doi:10.1038/s41531-026-01320-z [paper, repository]

Altered wakeful theta activity characterizes levodopa-induced dyskinesia in Parkinson's disease.

Journal: NPJ Parkinson's disease

Authors' code: biomedical-signal-processing/sleep-homeostasis-dyskinesia (no license)

Status: dead link

[6047] doi:10.1038/s41593-026-02208-0 [paper, repository]

Single-nucleus epigenomic profiling of the adult human central nervous system unveils epigenetic memory of developmental programs.

Journal: Nature neuroscience

Authors' code: theislab/diffxpy (BSD-3-Clause), mkabbe/snATACnanoCT_AdultHumanCNS (no license)

Status: code verified, 193 files readable, 18 matches

[6048] doi:10.1038/s41598-026-43511-x [paper, repository]

Quantitative assessment of apparent diffusion coefficient for neurological outcome prediction in status epilepticus: a pilot study.

Journal: Scientific reports

Authors' code: g2skhome/voxel-adc-se-prognosis (no license)

Status: empty repository, 1 file readable

Also: by category, author, journal, institution, tool or dataset; the search; the DOI lookup for any paper read, with or without a page.