Every paper, by date: page 10

44,644 papers with a page: 24,189 with their authors' code, 4,955 with code on request, 15,495 with data only. The most recent first, 224 a page. Page 10 of 200: 7 July 2026 to 1 July 2026.

Tuesday, 7 July 2026 (40 papers, 5 on this page)

[2017] doi:10.3390/ijms27136083 [paper, data]

Systematic Evaluation of Competing Brain Transcriptomic Representations Reveals Reciprocal Patterns Across Heterogeneous Contexts.

Journal: International journal of molecular sciences

Status: data only, 1 dataset cited

[2018] doi:10.3390/jemr19040074 [paper, data]

Eye-Movement-Assisted Time-Frequency EEG Decoding for Multimodal Robotic Arm Control.

Journal: Journal of eye movement research

Status: data only, 1 dataset cited

[2019] Code ↔ Paper doi:10.7554/elife.107088 [paper, repository]

Development of auditory and spontaneous movement responses to music over the first postnatal year.

Journal: eLife

Authors' code: tnguyen1992/tinydancer (CC0-1.0)

Status: code verified, 65 files readable, 6 matches

[2020] doi:10.7554/elife.107955 [paper, data]

Multiple event segmentation mechanisms in the human brain.

Journal: eLife

Status: data only, 1 dataset cited

[2021] Code ↔ Paper doi:10.7554/elife.108224 [paper, repository]

Arrayed single-gene perturbations identify drivers of human anterior neural tube closure.

Journal: eLife

Authors' code: royahuang/2026_HuangAnand (MIT)

Status: code verified, 20 files readable, 8 matches

Monday, 6 July 2026 (37 papers)

[2022] Code ↔ Paper doi:10.1007/s00234-026-04103-8 [paper, repository]

Enhanced detection of subtle cortical abnormalities in focal epilepsy using 7 T MRI surface-based models and graph neural networks.

Journal: Neuroradiology

Authors' code: MELDProject/meld_graph (other)

Status: code verified, 108 files readable, 6 matches

[2023] Code ↔ Paper doi:10.1016/j.bbih.2026.101299 [paper, repository]

Multimodal approach to identify neuropsychophysiological subgroups in myalgic encephalomyelitis/chronic fatigue syndrome and their relevance for rehabilitation: protocol for a mechanistic cross-sectional and longitudinal study.

Journal: Brain, behavior, & immunity - health

Authors' code: labgas/labgascore (GPL-3.0), labgas/CANlab_help_examples (GPL-2.0)

Status: code verified, 399 files readable, 16 matches

[2024] doi:10.1016/j.bpsgos.2026.100785 [paper, data]

Noninvasive Mapping of Striosome-Matrix Imbalance in Early Psychosis.

Journal: Biological psychiatry global open science

Status: data only, 1 dataset cited

[2025] Code ↔ Paper doi:10.1016/j.cub.2026.06.016 [paper, repository]

Neuronal RNAi and oxygen-sensing circuit shape germline resilience to heat stress.

Journal: Current biology : CB

Authors' code: GuyTeichman/RNAlysis (MIT), wormtracker/zentracker (no license)

Status: code verified, 139 files readable, 4 matches

[2026] Code ↔ Paper doi:10.1016/j.ebiom.2026.106367 [paper, repository]

Linking maternal blood pressure with fetal cerebral haemodynamics and cortical growth in congenital heart disease.

Journal: EBioMedicine

Authors' code: FNNDSC (no license)

Status: code verified

[2027] Code ↔ Paper doi:10.1016/j.isci.2026.116671 [paper, repository]

A high-resolution functional network-organized atlas of human superficial white matter from ultra-high-field diffusion MRI.

Journal: iScience

Authors' code: mushroomer1823/swm_atlas (no license), mushroomer1823/connectomic_cluster (no license)

Status: code verified, 54 files readable, 5 matches

[2028] Code ↔ Paper doi:10.1021/acscentsci.6c00422 [paper, repository]

Multimodal FRACTAL-MSI and Image Fusion Improves Detection and Resolution of Biomolecule Imaging.

Journal: ACS central science

Authors' code: davepbish/FRACTAL-MSI (MIT)

Status: code verified, 4 files readable

[2029] doi:10.1038/s41467-026-74739-w [paper, data]

Evolutionary drivers of encephalization and facial reduction in the genus Homo.

Journal: Nature communications

Status: data only, 2 datasets cited

[2030] Code ↔ Paper doi:10.1038/s41467-026-74753-y [paper, repository]

A human-specific microRNA controls the timing of excitatory synaptogenesis.

Journal: Nature communications

Authors' code: michasou/Soutschek_et_al.-2026 (no license), Zenodo 20109278 (CC-BY-4.0)

Status: code verified, 187 files readable, 27 matches

[2031] Code ↔ Paper doi:10.1038/s41467-026-74869-1 [paper, repository]

Complementary roles of cell-type-specific plasticity in shaping neocortical dynamics for learning action timing.

Journal: Nature communications

Authors' code: inagaki-lab/Majumder_et_al (no license), Zenodo 20314082 (CC-BY-4.0)

Status: code verified, 5 files readable, 3 matches

[2032] Code ↔ Paper doi:10.1038/s44271-026-00491-y [paper, repository]

Antagonism shapes social maps in the human brain.

Journal: Communications psychology

Authors' code: OSF ygde3 (no license)

Status: code verified, 16 files readable, 1 match

[2033] doi:10.1038/s44324-026-00112-6 [paper]

ATP-depleting spreading depolarizations preferentially originate in the somatosensory cortex during in situ energy deprivation.

Journal: npj metabolic health and disease

Status: code on request

[2034] Code ↔ Paper doi:10.1039/d6ra03343a [paper, repository]

A benchmark dataset and interpretable deep learning framework for drug-induced developmental neurotoxicity prediction.

Journal: RSC advances

Authors' code: lixiao1688/DNT_Benchmark_Dataset_Model (no license)

Status: code verified, 9 files readable, 13 matches

[2035] Code ↔ Paper doi:10.1073/pnas.2511442123 [paper, repository]

Time-resolved morphological and transcriptomic characterization of early enteric neuron subtype emergence in chick.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: forge.univ-lyon1.fr/melis/castellani_lab (no license)

Status: code verified

[2036] Code ↔ Paper doi:10.1093/braincomms/fcag255 [paper, repository]

Impaired consolidation of spatial memory during sleep in patients with leucine-rich glioma-inactivated 1-associated limbic encephalitis.

Journal: Brain communications

Authors' code: yf-neuro/LGI1-coupling-analysis (MIT)

Status: code verified, 6 files readable, 2 matches

[2037] doi:10.1093/psyrad/kkag025 [paper, data]

White matter functional connectome topology and its clinical correlations in adolescent major depressive disorder.

Journal: Psychoradiology

Status: data only, 2 datasets cited

[2038] Code ↔ Paper doi:10.1117/1.nph.13.3.035001 [paper, repository]

Understanding variability in full-term newborns' fNIRS data: the impact of birth weight and gestational age on infants' speech perception abilities.

Journal: Neurophotonics

Authors' code: OSF 6mzqp (no license)

Status: code verified, 12 files readable, 2 matches

[2039] doi:10.1177/0271678x261468891 [paper, data]

Endothelial estrogen receptor alpha (ESR1) regulates cerebral cavernous malformation pathogenesis via MEKK3-KLF signaling pathway.

Journal: Journal of cerebral blood flow and metabolism : official journal of the International Society of Cerebral Blood Flow and Metabolism

Status: data only, 1 dataset cited

[2040] doi:10.1186/s13073-026-01702-1 [paper, data]

Tandem repeat polymorphisms are associated with brain structure: results of two large population-based studies.

Journal: Genome medicine

Status: data only, 2 datasets cited

[2041] Code ↔ Paper doi:10.1186/s40708-026-00316-y [paper, repository]

Generalizable and explainable deep learning for brain MRI: a multi-cohort evaluation of 3D architectures for age and sex prediction.

Journal: Brain informatics

Authors' code: jrad9921/RadBrainDL (no license)

Status: code verified, 7 files readable, 2 matches

[2042] Code ↔ Paper doi:10.1371/journal.pbio.3003886 [paper, repository]

Shared memories of event details in the human brain are altered by misinformation and test expectations.

Journal: PLoS biology

Authors' code: Zenodo 20656852 (CC-BY-4.0)

Status: code verified, 3 files readable

[2043] doi:10.1371/journal.pbio.3003894 [paper, data]

Sequential neural dynamics underlie unconscious integration and conscious perception of visual stimuli.

Journal: PLoS biology

Status: data only, 1 dataset cited

[2044] Code ↔ Paper doi:10.1371/journal.pcbi.1013235 [paper, repository]

Population sparseness determines strength of Hebbian plasticity for maximal memory lifetime in associative networks.

Journal: PLoS computational biology

Authors' code: itbgit.biologie.hu-berlin.de/auer/sparseness_plasticity_lifetime (no license)

Status: code verified

[2045] Code ↔ Paper doi:10.1371/journal.pcbi.1014424 [paper, repository]

Combinatorial multiomic analysis from a pedigree of Sox10Dom Hirschsprung mice identifies multiple high confidence candidate modifiers of Enteric Nervous System development.

Journal: PLoS computational biology

Authors' code: Zenodo 20671852 (CC-BY-4.0)

Status: code verified, 21 files readable, 20 matches

[2046] Code ↔ Paper doi:10.1371/journal.pcbi.1014435 [paper, repository]

Predictive coding explains asymmetric connectivity in the brain: A neural network study.

Journal: PLoS computational biology

Authors' code: khanrom/Feedback_Grasping (CC-BY-4.0)

Status: code verified, 67 files readable, 7 matches

[2047] doi:10.2196/99490 [paper]

Construct Validation of a Remote Brain Health Assessment Battery to Evaluate Vocational Aptitude and Factors Associated With Cognitive Resilience in the Military: Observational Trial.

Journal: JMIR formative research

Status: code on request

[2048] Code ↔ Paper doi:10.3389/fcimb.2026.1785750 [paper, repository]

gNODE: gLV model-informed neural ordinary differential equations for modeling microbial community dynamics.

Journal: Frontiers in cellular and infection microbiology

Authors' code: tanxiaoxiu/gNODE (GPL-3.0)

Status: code verified, 9 files readable

[2049] doi:10.3389/fimmu.2026.1835359 [paper, data]

Perinatal morphine exposure induces chromatin and transcriptomic remodeling to alter immune and metabolic function.

Journal: Frontiers in immunology

Status: data only, 1 dataset cited

[2050] doi:10.3389/fimmu.2026.1842398 [paper, data]

A multi-omics framework integrating gut microbiota, blood metabolites, and immune cells to elucidate the pathogenesis of Alzheimer's disease.

Journal: Frontiers in immunology

Status: data only, 1 dataset cited

[2051] doi:10.3389/fncom.2026.1834764 [paper, data]

Topology-aware hybrid graph-transformer network for Alzheimer's disease diagnosis from structural magnetic resonance imaging.

Journal: Frontiers in computational neuroscience

Status: code on request, 1 dataset cited

[2052] Code ↔ Paper doi:10.3389/fnhum.2026.1839961 [paper, repository]

Developmental stability of task-rest neural efficiency in youth using a threat and cognitive control task.

Journal: Frontiers in human neuroscience

Authors' code: NIMH-SDAN/Neural.Efficiency.2025 (CC0-1.0)

Status: code verified, 18 files readable, 1 match

[2053] Code ↔ Paper doi:10.3389/fnimg.2026.1873040 [paper, repository]

A rapid streamline-based extension of Tractfinder for white matter tract segmentation.

Journal: Frontiers in neuroimaging

Authors' code: tractfinder/tractfinder (no license), fionaEyoung/tractfinder (no license)

Status: code verified, 14 files readable

[2054] Code ↔ Paper doi:10.3389/fpsyt.2026.1837909 [paper, repository]

Preliminary testing of a prespecified liability architecture for autism: theory-guided pathogenetic triad models outperform strength-matched alternatives.

Journal: Frontiers in psychiatry

Authors' code: OSF sg8ad (no license)

Status: code verified, 7 files readable, 12 matches

[2055] doi:10.3390/biom16070992 [paper, data]

Molecular Networks and Key Regulators Underlying Resilience of the Human Brain to Aging and Dementia.

Journal: Biomolecules

Status: data only, 1 dataset cited

[2056] Code ↔ Paper doi:10.3390/ijms27136068 [paper, repository]

Loss of Neuropeptide Y Signaling Accompanies the Neural-to-Mesenchymal Transcriptional Transition in Glioblastoma: A Multi-Scale Transcriptomic Analysis.

Journal: International journal of molecular sciences

Authors' code: itika05/NPY-GBM-transcriptomics (MIT)

Status: code verified, 14 files readable, 20 matches

[2057] Code ↔ Paper doi:10.3758/s13428-026-02997-z [paper, repository]

PyLossless: A non-destructive EEG processing pipeline.

Journal: Behavior research methods

Authors' code: lina-usc/pylossless (MIT)

Status: code verified, 45 files readable, 18 matches

[2058] Code ↔ Paper doi:10.7554/elife.107085 [paper, repository]

Activity-dependent CO<sub>2</sub> production in the axon triggers opening of Connexin32 in the Schwann cell paranode.

Journal: eLife

Authors' code: supp:PMC13336771/elife-107085-code1.zip (no license), supp:PMC13336771/elife-107085-code2.zip (no license), supp:PMC13336771/elife-107085-code3.zip (no license)

Status: empty repository

Sunday, 5 July 2026 (3 papers)

[2059] Code ↔ Paper doi:10.1113/jp290164 [paper, repository]

Improved subjective sleep quality in older adults by enhancing the GABAergic system in the sensorimotor cortex.

Journal: The Journal of physiology

Authors' code: OSF t75vc (no license)

Status: code found, still to be checked

[2060] doi:10.1177/11795549261466431 [paper]

Advances and Future Expectations in Oncolytic Virus Therapy for Glioblastoma: A Systematic Review of Clinical Trials.

Journal: Clinical Medicine Insights. Oncology

Status: code on request

[2061] doi:10.3390/cimb48070691 [paper, data]

Astrocyte Subtype-Specific Expression of the Sodium-Coupled Citrate Transporter <i>SLC13A5</i> and Citrate Metabolism Genes Across Alzheimer's Disease Pseudoprogression: A Single-Nucleus RNA Sequencing Analysis of the Human Middle Temporal Gyrus.

Journal: Current issues in molecular biology

Status: code on request, 1 dataset cited

Saturday, 4 July 2026 (15 papers)

[2062] Code ↔ Paper doi:10.1007/s00406-026-02317-8 [paper, repository]

The role of attention in perceptual biases in patients with schizophrenia spectrum disorder and healthy controls.

Journal: European archives of psychiatry and clinical neuroscience

Authors' code: Zenodo 17276367 (CC-BY-4.0)

Status: code verified, 19 files readable

[2063] doi:10.1007/s10916-026-02436-8 [paper, data]

Security Analysis of a Federated Learning Framework for Medical Image-to-Image Translation.

Journal: Journal of medical systems

Status: data only, 1 dataset cited

[2064] Code ↔ Paper doi:10.1016/j.dcn.2026.101775 [paper, repository]

Neonatal brain-age models in full- and preterm infants.

Journal: Developmental cognitive neuroscience

Authors' code: lukassnoek/mvca (MIT)

Status: code verified, 21 files readable

[2065] doi:10.1016/j.isci.2026.116598 [paper]

Complementary δ2-protocadherin expression delineates parallel basal ganglia circuits in primates.

Journal: iScience

Status: code on request

[2066] doi:10.1038/s41398-026-04212-1 [paper]

High-order brain interactions during ketamine-induced state changes: A functional marker of response in late-life treatment-resistant depression?

Journal: Translational psychiatry

Status: code on request

[2067] doi:10.1038/s41467-026-74791-6 [paper, data]

Visual learning at fast and slow timescales is driven by distinct plasticity rules in primate inferotemporal cortex.

Journal: Nature communications

Status: code on request, 1 dataset cited

[2068] Code ↔ Paper doi:10.1038/s41467-026-74822-2 [paper, repository]

A likelihood-based method for identifying replay from spike sequences.

Journal: Nature communications

Authors' code: figshare 31942599 (CC-BY-4.0)

Status: code verified, 14 files readable, 3 matches

[2069] Code ↔ Paper doi:10.1038/s41467-026-74957-2 [paper, repository]

Joint trajectories of brain atrophy, white matter hyperintensities and cognition quantify brain maintenance.

Journal: Nature communications

Authors' code: neuroprognosis/brain-maintenance-lgcm (GPL-3.0)

Status: code verified, 13 files readable, 1 match

[2070] Code ↔ Paper doi:10.1038/s41467-026-75102-9 [paper, repository]

Glutamatergic signaling underlies brain structural organization for mathematical and reading abilities in children.

Journal: Nature communications

Authors' code: Zenodo 20574388 (CC-BY-4.0), scsnl/yz_smri_math_reading_nt_2025 (CC-BY-NC-4.0)

Status: code verified, 47 files readable, 13 matches

[2071] Code ↔ Paper doi:10.1038/s41467-026-75193-4 [paper, repository]

Multi-ancestry gene expression models amplify transcriptome-wide association study discovery and validation.

Journal: Nature communications

Authors' code: Zenodo 14889757 (CC-BY-4.0), hakyimlab/MetaXcan (MIT), qingnanl/gsdensity_manuscript_code (no license), Zenodo 18315835 (CC-BY-4.0)

Status: code verified, 163 files readable, 11 matches

[2072] Code ↔ Paper doi:10.1038/s41467-026-75220-4 [paper, repository]

Causal Dynamics of Social Gaze in Primate Prefrontal-Amygdala Networks Revealed by Dynamic Bayesian Modeling.

Journal: Nature communications

Authors' code: pgmpy/pgmpy (MIT), Zenodo 20055775 (CC-BY-4.0)

Status: code verified, 701 files readable, 2 matches

[2073] Code ↔ Paper doi:10.1038/s41467-026-75265-5 [paper, repository]

Closed-loop readout of anterior insula high-gamma activity steers value-based decisions.

Journal: Nature communications

Authors' code: Zenodo 20545301 (CC-BY-4.0)

Status: code verified, 5 files readable, 2 matches

[2074] doi:10.1038/s41598-026-60334-y [paper, data]

Enhancing brain tumor detection through deep learning and explainable AI techniques.

Journal: Scientific reports

Status: data only, 2 datasets cited

[2075] doi:10.3390/biology15131074 [paper]

The Distinct Electrophysiological Mechanisms in the Cortico-Striatal Circuit of LID Rats.

Journal: Biology

Status: code on request

[2076] doi:10.3390/ijms27136020 [paper, data]

Investigating the Kidney-Gut-Brain Axis in CKD: Uremic Toxins and Brain Microhemorrhages.

Journal: International journal of molecular sciences

Status: data only, 1 dataset cited

Friday, 3 July 2026 (23 papers)

[2077] Code ↔ Paper doi:10.1002/mrm.70497 [paper, repository]

Suppression of Oscillation and Ghosting in RF-Spoiled Gradient-Echo-Based Dynamic Imaging.

Journal: Magnetic resonance in medicine

Authors' code: Goldrmat/MRM_RF-phase-cycle-adapted-cine-averaging (no license)

Status: code verified, 6 files readable

[2078] doi:10.1016/j.isci.2026.116477 [paper]

Slow intrinsic oscillations in the ventrolateral preoptic nucleus.

Journal: iScience

Status: code on request

[2079] Code ↔ Paper doi:10.1016/j.xpro.2026.104675 [paper, repository]

Protocol for semi-automatic quantitative bioimaging analysis of synapse loss.

Journal: STAR protocols

Authors' code: ekatrukha/ComDet (GPL-3.0), neuroagingandAD/Synapsepunctaanalysis (no license)

Status: code verified, 21 files readable, 2 matches

[2080] doi:10.1038/s41377-026-02395-2 [paper, data]

Two-photon 3D imaging of optically stimulated neural activity at 100 Hz.

Journal: Light, science & applications

Status: data only, 2 datasets cited

[2081] doi:10.1038/s43587-026-01166-3 [paper, data]

Therapeutic targeting of the conserved region within the low-complexity domain of TDP-43 is neuroprotective and extends survival in amyotrophic lateral sclerosis mice.

Journal: Nature aging

Status: data only, 2 datasets cited

[2082] doi:10.1038/s44319-026-00846-w [paper]

GATOR1 signaling defects promote astrocytic metabolic rewiring and excitatory neurotransmitter cycling.

Journal: EMBO reports

Status: data only

[2083] doi:10.1080/21505594.2026.2697518 [paper, data]

Encephalomyocarditis virus impairs the blood-brain barrier by degrading tight junction proteins via AKT3-dependent autophagic and apoptotic pathways.

Journal: Virulence

Status: data only, 1 dataset cited

[2084] Code ↔ Paper doi:10.1111/joa.70203 [paper, repository]

Two-step workflow integrating automatic registration and manual refinement for the accurate alignment of serial histological sections in 3D reconstruction.

Journal: Journal of anatomy

Authors' code: SatoruMuro/AlignRef (Apache-2.0), SatoruMuro/SAM2GUIfor3Drecon (Apache-2.0)

Status: code verified, 135 files readable, 1 match

[2085] Code ↔ Paper doi:10.1126/sciadv.adx5109 [paper, repository]

Substance P regulates Tacr1 neurons, which control nitric oxide-mediated neurovascular coupling in the mouse cortex.

Journal: Science advances

Authors' code: Zenodo 10656014 (CC-BY-4.0), neuroimlabpitt/tacr1-paper2024_functions (no license)

Status: code verified, 298 files readable

[2086] Code ↔ Paper doi:10.1126/sciadv.aed3610 [paper, repository]

Dexterous single sniffs for ethological active olfaction.

Journal: Science advances

Authors' code: Zenodo 17065558 (CC-BY-4.0)

Status: code verified, 14 files readable, 5 matches

[2087] doi:10.1126/sciadv.aed8653 [paper, data]

Targeting astrocytic Dp71 attenuates BBB disruption after traumatic brain injury through WTAP-associated m<sup>6</sup>A regulation of MMP2.

Journal: Science advances

Status: data only, 1 dataset cited

[2088] Code ↔ Paper doi:10.1126/sciadv.aee1002 [paper, repository]

Theta oscillations are an organizational unit of odor processing in the olfactory bulb.

Journal: Science advances

Authors' code: Zenodo 18791231 (CC-BY-4.0)

Status: code verified, 22 files readable, 16 matches

[2089] Code ↔ Paper doi:10.1126/sciadv.aee5076 [paper, repository]

A 3D amphioxus brain atlas illuminates the blueprint of the ancestral chordate brain and highlights unique vertebrate innovations.

Journal: Science advances

Authors' code: LCY-ICOB/amphiBrain (no license), Zenodo 19658940 (CC-BY-4.0)

Status: code verified, 1 file readable

[2090] doi:10.1161/jaha.125.047556 [paper]

Evaluating and Mitigating Carbon Dioxide Equivalent Emissions in Stroke Management: A Modeling Study.

Journal: Journal of the American Heart Association

Status: code on request

[2091] Code ↔ Paper doi:10.1186/s42490-026-00116-9 [paper, repository]

An edge-AI enabled wearable platform for real-time epileptic seizure detection with geolocated alerting.

Journal: BMC biomedical engineering

Authors' code: abdibbey/Real_Time_Seizure_Detection_and_Alert_System (no license)

Status: code verified, 2 files readable, 3 matches

[2092] Code ↔ Paper doi:10.3389/fnins.2026.1858005 [paper, repository]

Targeted stool metabolomics suggests exploratory catecholamine- and tryptophan-linked metabolic features in autism spectrum disorder.

Journal: Frontiers in neuroscience

Authors' code: kevinliu-bmb/targeted-asd-stool-metabolomics (MIT)

Status: code verified, 3 files readable, 4 matches

[2093] doi:10.3389/fnut.2026.1830204 [paper]

Bias-reduced Regression Analysis in Nutrition (BRAiN) index: self-reported diet and predicted cognitive function.

Journal: Frontiers in nutrition

Status: code on request

[2094] doi:10.3390/brainsci16070716 [paper, data]

RGB-Style Input Representations for EEG: Evaluating Spatial Concatenation Versus Band-Wise Stacking in Deep Emotion Recognition.

Journal: Brain sciences

Status: data only, 2 datasets cited

[2095] doi:10.3390/cancers18132151 [paper, data]

αS-SETMAR: Inducing Protective Chaos in Glioblastoma?

Journal: Cancers

Status: data only, 1 dataset cited

[2096] doi:10.3390/s26134232 [paper, data]

HRL-Det: Hierarchical Reinforcement Learning for Sequential Object Detection in Aerial Imagery.

Journal: Sensors (Basel, Switzerland)

Status: data only, 1 dataset cited

[2097] doi:10.3892/ijmm.2026.5912 [paper, data]

<i>FLI1</i> enhances the malignant phenotype of glioma cells and exerts immunomodulatory effects through feedback crosstalk with exonic circRNA <i>FECR1</i> and interferon‑induced <i>ISG15</i>.

Journal: International journal of molecular medicine

Status: data only, 2 datasets cited

[2098] Code ↔ Paper doi:10.7554/elife.108352 [paper, repository]

Analysis of dendritic input currents during place field dynamics.

Journal: eLife

Authors' code: bencefogel/currentscapes-invivo-demo (MIT), bencefogel/currentscapes-simple-model-examples (MIT)

Status: code verified, 73 files readable, 7 matches

[2099] Code ↔ Paper doi:10.7554/elife.109240 [paper, repository]

Neural activity profiles reveal overlapping, intermingled subpopulations spanning area borders in mouse sensorimotor cortex.

Journal: eLife

Authors' code: kaufmanlab/SGK26-public (CC0-1.0)

Status: code verified, 132 files readable, 24 matches

Thursday, 2 July 2026 (33 papers)

[2100] doi:10.1002/nep3.70047 [paper, data]

An open-source pipeline for longitudinal single-cell tracking and cell-cycle/migration coupling analysis for neurotherapeutic screening.

Journal: Neuroprotection (Chichester, England)

Status: data only, 1 dataset cited

[2101] Code ↔ Paper doi:10.1007/s00426-026-02341-2 [paper, repository]

When emotions hurt: negative interpretations of bodily signals and interoceptive difficulties in fibromyalgia.

Journal: Psychological research

Authors' code: OSF 4du3f (no license)

Status: code verified, 8 files readable, 1 match

[2102] doi:10.1007/s12035-026-06014-4 [paper, data]

Hypothalamus Amyloid Levels Are Associated with Early Sex-Dependent Alterations in Peripheral Energy Homeostasis in TgF344-AD Rats.

Journal: Molecular neurobiology

Status: data only, 1 dataset cited

[2103] doi:10.1016/j.dib.2026.113056 [paper, data]

A single-echo/multi-echo BOLD fMRI test-retest dataset.

Journal: Data in brief

Status: data only, 3 datasets cited

[2104] Code ↔ Paper doi:10.1016/j.isci.2026.116439 [paper, repository]

Decoding the role of transcriptomic clocks in the human prefrontal cortex.

Journal: iScience

Authors' code: martinezjaime/PFC-Transcriptomic (no license), Jacobson-CompSysBio/MENTOR-py (MIT)

Status: code verified, 68 files readable, 24 matches

[2105] doi:10.1016/j.isci.2026.116563 [paper]

Microglia and its P2RY12 receptors regulate seizure severity.

Journal: iScience

Status: code on request

[2106] Code ↔ Paper doi:10.1016/j.prdoa.2026.100480 [paper, repository]

Multitype hand writing as a digital marker for Parkinson's disease.

Journal: Clinical parkinsonism & related disorders

Authors' code: mishmoth/Multitype-hand-writing-as-a-digital-marker-for-Parkinson-s-disease- (no license)

Status: empty repository

[2107] doi:10.1016/j.stemcr.2026.102996 [paper, data]

Neural stem cells as potential mediators of prenatal dietary stress through epigenetic mechanisms.

Journal: Stem cell reports

Status: code on request, 1 dataset cited

[2108] Code ↔ Paper doi:10.1016/j.stemcr.2026.102997 [paper, repository]

BDNF regulates pituitary stem cell engagement toward precursor state.

Journal: Stem cell reports

Authors' code: jinworks/CellChat (GPL-3.0), alexdobin/STAR (MIT)

Status: code verified, 354 files readable, 6 matches

[2109] Code ↔ Paper doi:10.1016/j.xpro.2026.104678 [paper, repository]

Protocol for longitudinal two-photon calcium imaging and holographic optogenetic manipulation to investigate memory in mice.

Journal: STAR protocols

Authors' code: Zenodo 16830880 (GPL-3.0), ariadneunsworth/findusn (GPL-3.0)

Status: code verified, 228 files readable, 2 matches

[2110] Code ↔ Paper doi:10.1016/j.ynirp.2026.100377 [paper, repository]

Accelerated brain aging in Veterans with posttraumatic stress symptoms and mild traumatic brain injury.

Journal: Neuroimage. Reports

Authors' code: vishnubashyam/DeepBrainNet (no license)

Status: code verified, 4 files readable

[2111] Code ↔ Paper doi:10.1038/s12276-026-01764-6 [paper, repository]

Oligodendrocyte prosaposin restores subarachnoid haemorrhage-induced consciousness impairment.

Journal: Experimental & molecular medicine

Authors' code: Zenodo 15275572 (no license)

Status: dead link

[2112] Code ↔ Paper doi:10.1038/s41467-026-75213-3 [paper, repository]

Concurrent control of natural and robotic limbs through a tactile-encoded brain-computer interface.

Journal: Nature communications

Authors' code: jty940529/Tactile_P300_BCI (no license)

Status: code verified, 4 files readable

[2113] Code ↔ Paper doi:10.1038/s41467-026-75225-z [paper, repository]

A single-cell atlas of alternative wing development in two hemipteran species.

Journal: Nature communications

Authors' code: wanyizju/Pyap-wing-singlecell-2026 (MIT), Zenodo 19603850 (MIT)

Status: code verified, 12 files readable, 6 matches

[2114] Code ↔ Paper doi:10.1038/s41556-026-02009-4 [paper, repository]

An atlas of primate insular cortex reveals a signal-processing strategy in von Economo neurons.

Journal: Nature cell biology

Authors' code: haozhaozhe/FM_V1 (MIT), RFLiu2021/AIC_proj (no license), Zenodo 19995355 (CC-BY-4.0), Zenodo 17799559 (CC-BY-4.0)

Status: code verified, 18 files readable, 10 matches

[2115] Code ↔ Paper doi:10.1038/s44319-026-00856-8 [paper, repository]

Lipid droplets promote aberrant liquid-liquid phase separation of alpha-synuclein impairing energy homeostasis.

Journal: EMBO reports

Authors' code: eleannakara/kara-lab (MIT), sunghoojung/segment-classify-pipeline (no license)

Status: code verified, 14 files readable, 10 matches

[2116] doi:10.1038/s44321-026-00473-x [paper, data]

OTUB1 non-canonically inhibits TAB2 ubiquitination to govern microglia-mediated neuroinflammation.

Journal: EMBO molecular medicine

Status: data only, 1 dataset cited

[2117] Code ↔ Paper doi:10.1073/pnas.2602515123 [paper, repository]

Initial organization and progressive expansion of the math-responsive brain network during the first school years.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: OSF 5kvd9 (no license)

Status: code verified, 3 files readable

[2118] Code ↔ Paper doi:10.1093/pnasnexus/pgag220 [paper, repository]

Neural mechanisms of awareness of action.

Journal: PNAS nexus

Authors' code: BlumenfeldLab/Jin-et-al_2026 (no license)

Status: code verified, 83 files readable

[2119] Code ↔ Paper doi:10.1111/cge.70204 [paper, repository]

Phenotypic Characterization of Five Children With PACS1-NDD: Longitudinal Insights Into Development, Behavior, and Brain.

Journal: Clinical genetics

Authors' code: danizoeller/myMixed-ModelsTrajectories (no license)

Status: dead link

[2120] Code ↔ Paper doi:10.1162/imag.a.1286 [paper, repository]

Behavioral imitation with artificial neural networks leads to personalized models of brain dynamics during videogame play.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: anirudhk686/shinobi_imitation_learning (no license)

Status: code verified, 10 files readable, 3 matches

[2121] doi:10.1186/s13063-026-09866-2 [paper]

Efficacy of transcranial direct current stimulation for post-stroke urinary incontinence: study protocol for a randomized controlled trial.

Journal: Trials

Status: code on request

[2122] Code ↔ Paper doi:10.1371/journal.pbio.3003831 [paper, repository]

Disinhibitory signaling enables flexible coding of top-down information in cortical networks.

Journal: PLoS biology

Authors' code: Zenodo 20148662 (CC-BY-4.0)

Status: code verified, 123 files readable, 20 matches

[2123] doi:10.1371/journal.pone.0344291 [paper, data]

Deep learning based two-way feature depiction model for brain tumor detection.

Journal: PloS one

Status: data only, 1 dataset cited

[2124] doi:10.3389/fcell.2026.1809251 [paper, data]

Pbx1 and Pbx3 cooperatively regulate intermediate progenitor genesis and corticogenesis in the mouse neocortex.

Journal: Frontiers in cell and developmental biology

Status: data only, 3 datasets cited

[2125] doi:10.3389/fgene.2026.1865257 [paper, data]

Disease-predominant loci across Alzheimer's disease, Parkinson's disease and Lewy body dementia: evidence from the UK Biobank prospective cohort, conditional GWAS and colocalization.

Journal: Frontiers in genetics

Status: data only, 1 dataset cited

[2126] doi:10.3389/fimmu.2026.1775662 [paper, data]

<i>Blomia tropicalis</i> allergens induce lung DNA methylation changes in neuroimmune genes in a mouse model of airway inflammation.

Journal: Frontiers in immunology

Status: data only, 1 dataset cited

[2127] doi:10.3389/fmicb.2026.1765044 [paper, data]

Integrating serum pharmacology, network pharmacology, and molecular biology analysis to reveal the mechanisms of Baihe Dihuang decoction in treating Alzheimer's disease.

Journal: Frontiers in microbiology

Status: data only, 1 dataset cited

[2128] Code ↔ Paper doi:10.3389/fncel.2026.1870679 [paper, repository]

Pharmacological activation of cGMP signaling promotes astrocyte remodeling and enrichment of perivascular GLUT1 in the murine retina.

Journal: Frontiers in cellular neuroscience

Authors' code: scikit-fmm/scikit-fmm (BSD-3-Clause)

Status: code verified, 25 files readable, 1 match

[2129] doi:10.3389/fnins.2026.1862571 [paper, data]

Integrated bulk, single-cell, and spatial transcriptomic analyses prioritize NOTCH1 as a candidate gene associated with neurovascular and immune-related alterations in Parkinson's disease.

Journal: Frontiers in neuroscience

Status: code on request, 1 dataset cited

[2130] Code ↔ Paper doi:10.3390/bioengineering13070773 [paper, repository]

From API to Action: A Multi-Model Comparison of OpenAI, Anthropic, Google, and Meta LLMs for Clinical Trial Data Extraction.

Journal: Bioengineering (Basel, Switzerland)

Authors' code: ricyoung/ClinicalTrialLLM-Extractor (MIT)

Status: code verified, 12 files readable, 14 matches

[2131] doi:10.3390/s26134167 [paper, data]

M2EEG-VR: Validation of EEG Visualization and Sonification for the Detection of Neonatal Seizures on a Virtual Reality Platform.

Journal: Sensors (Basel, Switzerland)

Status: data only, 1 dataset cited

[2132] doi:10.3390/s26134186 [paper, data]

CMEpiNet: Complex-Valued Multimodal Epilepsy Detection Network Model.

Journal: Sensors (Basel, Switzerland)

Status: data only, 1 dataset cited

Wednesday, 1 July 2026 (144 papers, 108 on this page)

[2133] doi:10.1002/2056-4538.70106 [paper]

Mechanosensitive TRPV4 immunohistochemistry improves deep learning-based classification of ductal carcinoma in situ beyond H&E morphology.

Journal: The journal of pathology. Clinical research

Status: code on request

[2134] Code ↔ Paper doi:10.1002/alz.71630 [paper, repository]

Genetic architecture of the limbic white matter microstructure in aging and Alzheimer's Disease.

Journal: Alzheimer's & dementia : the journal of the Alzheimer's Association

Authors' code: Zenodo 13863955 (CC-BY-4.0)

Status: code verified

[2135] Code ↔ Paper doi:10.1002/alz.71649 [paper, repository]

Postmortem brain MRI reveals differential associations of subcortical and limbic volumes with cortical thinning and neurodegenerative pathologies.

Journal: Alzheimer's & dementia : the journal of the Alzheimer's Association

Authors' code: Pulkit-Khandelwal/purple-mri (no license), Pulkit-Khandelwal/postmortem-subcortical-limbic-pathologies (no license)

Status: code verified, 118 files readable, 12 matches

[2136] doi:10.1002/brb3.71563 [paper, data]

A Hybrid Random Forest-SARSA Framework for Resting-State EEG-Based Parkinson's Disease Detection With Temporal Decision Refinement.

Journal: Brain and behavior

Status: data only, 1 dataset cited

[2137] doi:10.1002/brb3.71605 [paper]

The Effects of Transcranial Magnetic Stimulation on Alcohol Craving, Efficacy, Emotion, and Cognitive Function in Patients With Alcohol Use Disorders: A Systematic Review and Meta-Analysis of Randomized Controlled Trial.

Journal: Brain and behavior

Status: code on request

[2138] doi:10.1002/cne.70184 [paper, data]

The Neural Distribution of Vasotocin, Oxytocin, Dopamine, and Serotonin in Two Australian Skinks With Contrasting Social Lives.

Journal: The Journal of comparative neurology

Status: data only, 1 dataset cited

[2139] Code ↔ Paper doi:10.1002/cnr2.70625 [paper, repository]

Machine Learning-Based Prediction of Brain Metastasis at Initial Diagnosis in Small-Cell Lung Cancer: Model Development and SHAP Interpretation Study.

Journal: Cancer reports (Hoboken, N.J.)

Authors' code: Huangzikun/BrainMets (no license)

Status: dead link

[2140] Code ↔ Paper doi:10.1002/cns.70976 [paper, repository]

Cingulate Gradient Dysfunction in End-Stage Renal Disease: Associations With Clinical Phenotypes and Exploratory Transcriptomic Signatures.

Journal: CNS neuroscience & therapeutics

Authors' code: OSF f2t9j (no license)

Status: code verified, 1 file readable

[2141] doi:10.1002/cns.71021 [paper, data]

Multilayer Proteome and Metabolome-Based Validation Uncovers Combined Regulatory Roles and Predictive Values of 6 RNA Modifications and Cellular Senescence in Alzheimer's Disease.

Journal: CNS neuroscience & therapeutics

Status: data only, 1 dataset cited

[2142] Code ↔ Paper doi:10.1002/dad2.70430 [paper, repository]

Benchmarking privacy and utility in synthetic tabular cohorts for Alzheimer's disease research.

Journal: Alzheimer's & dementia (Amsterdam, Netherlands)

Authors' code: fwinzell/synthetic_ad (MIT)

Status: code verified, 32 files readable, 7 matches

[2143] doi:10.1002/dad2.70475 [paper]

Plasma GFAP and language-network tau mediate the effect of amyloid burden on semantic fluency: A mediation analysis.

Journal: Alzheimer's & dementia (Amsterdam, Netherlands)

Status: code on request

[2144] doi:10.1002/dad2.70484 [paper]

AST/ALT, <i>APOE</i> ε4, and Alzheimer's disease progression: A longitudinal cohort study.

Journal: Alzheimer's & dementia (Amsterdam, Netherlands)

Status: code on request

[2145] Code ↔ Paper doi:10.1002/ejp.70313 [paper, repository]

Predicting Pain: Electroencephalography Signatures of Neural Integration During Experimental Tonic Thermal Pain.

Journal: European journal of pain (London, England)

Authors' code: han-yy/NeuralMarkerPain (MIT)

Status: code verified, 48 files readable, 4 matches

[2146] doi:10.1002/ejp.70331 [paper, data]

Structural and Functional Neuroimaging Findings in Fibromyalgia: A Systematic Review.

Journal: European journal of pain (London, England)

Status: data only, 1 dataset cited

[2147] doi:10.1002/ejsc.70205 [paper, data]

A Single Session of Slackline Training Induces Rapid, Task-Specific Balance Improvements and Elevated Resting-State Beta Band Power.

Journal: European journal of sport science

Status: data only, 1 dataset cited

[2148] doi:10.1002/hbm.70561 [paper]

Benchmarking fMRI Denoising Pipelines.

Journal: Human brain mapping

Status: code on request

[2149] doi:10.1002/hbm.70579 [paper, data]

Neural Correlates of Motor Sequence Learning and Enhanced Offline Consolidation in 7-11-Year-Old Children.

Journal: Human brain mapping

Status: data only, 1 dataset cited

[2150] Code ↔ Paper doi:10.1002/hbm.70588 [paper, repository]

Talking to the Brain: Using Large Language Models as Proxies to Model Brain Semantic Features.

Journal: Human brain mapping

Authors' code: pyecharts/pyecharts (MIT)

Status: code verified, 137 files readable

[2151] doi:10.1002/hbm.70590 [paper]

Diurnal Variations and Test-Retest Reliability of Resting-State Functional MRI Metrics.

Journal: Human brain mapping

Status: code on request

[2152] Code ↔ Paper doi:10.1002/hbm.70593 [paper, repository]

Test-Retest Reliability of Sensorimotor Activity Measured With Spinal Cord fMRI.

Journal: Human brain mapping

Authors' code: oliviakowalczyk/spain_squeeze (MIT), OSF fjasd (no license), OSF u8rbq (no license)

Status: code verified, 89 files readable, 8 matches

[2153] doi:10.1002/hbm.70594 [paper, data]

Neural Correlates of Explicit Outcome Expectation Effects: An Activation Likelihood Estimation Meta-Analysis.

Journal: Human brain mapping

Status: data only, 1 dataset cited

[2154] Code ↔ Paper doi:10.1002/hbm.70596 [paper, repository]

Modeled Long-Term Effects of Psilocybin on Dynamic Activity and Effective Connectivity of Fronto-Striatal-Thalamic Circuits.

Journal: Human brain mapping

Authors' code: lollopasquini (no license)

Status: code verified

[2155] doi:10.1002/hbm.70598 [paper, data]

GABAergic Modulation of Brain Function During Prosaccade and Antisaccade Eye Movements: Evidence From Ultra-High-Field fMRI.

Journal: Human brain mapping

Status: data only, 1 dataset cited

[2156] Code ↔ Paper doi:10.1002/hbm.70599 [paper, repository]

Group Joint ICA (gjICA): A Method for Multimodal Fusion of Concurrent EEG and fMRI Data.

Journal: Human brain mapping

Authors' code: trendscenter/gift (no license)

Status: code verified, 1,047 files readable, 2 matches

[2157] doi:10.1002/hbm.70601 [paper, data]

Emotional Context Modulates the Response to Somatosensory Stimuli Within 20 milliseconds.

Journal: Human brain mapping

Status: data only, 1 dataset cited

[2158] Code ↔ Paper doi:10.1002/hbm.70602 [paper, repository]

Neuroimaging Correlates of Post-Stroke Pain After Ischemic Stroke: Secondary Analysis of the INSPiRE-TMS Trial.

Journal: Human brain mapping

Authors' code: netstim/leaddbs (GPL-3.0)

Status: code verified, 2,000 files readable, 7 matches

[2159] Code ↔ Paper doi:10.1002/hbm.70605 [paper, repository]

BrainEnrich: Revealing Biological Insights for Imaging-Derived Phenotypes Through Transcriptomic Enrichment.

Journal: Human brain mapping

Authors' code: YuLab-SMU/enrichplot (no license), zh1peng/paper_code (no license), MICA-MNI/ENIGMA (BSD-3-Clause)

Status: code verified, 389 files readable, 4 matches

[2160] doi:10.1002/mp.70520 [paper, data]

A new in silico model to precisely design focused ultrasound brain therapies.

Journal: Medical physics

Status: data only, 1 dataset cited

[2161] Code ↔ Paper doi:10.1002/nbm.70331 [paper, repository]

Dipolar Order Mapping Based on Spin-Lock Magnetic Resonance Imaging.

Journal: NMR in biomedicine

Authors' code: zjgao-spin/Dipolar-order-mapping (MIT), MIC-DKFZ/TractSeg (Apache-2.0)

Status: code verified, 125 files readable, 13 matches

[2162] Code ↔ Paper doi:10.1002/sim.70658 [paper, repository]

Predictor-Assisted Nonparametric Graphical Models With Multivariate Error-Prone Data.

Journal: Statistics in medicine

Authors' code: lchen723/RF_Graph (no license)

Status: dead link

[2163] Code ↔ Paper doi:10.1002/trc2.70304 [paper, repository]

Thalamic volume alterations mediate glymphatic function and cognitive dysfunction in Alzheimer's disease.

Journal: Alzheimer's & dementia (New York, N. Y.)

Authors' code: OSF wgtn7 (no license)

Status: code verified, 2 files readable, 5 matches

[2164] doi:10.1007/s00401-026-03050-1 [paper]

Molecular changes during AT/RT progression associated with epithelial-mesenchymal transition and extracellular matrix changes.

Journal: Acta neuropathologica

Status: data only

[2165] Code ↔ Paper doi:10.1016/j.isci.2026.116324 [paper, repository]

Ecological not social factors explain brain size in cephalopods.

Journal: iScience

Authors' code: kcbasava/ceph-brain-evolution (no license), drepanosaur/ceph-brain-evolution (no license), kcbasava/ceph-brain-evolution.•All (no license), kcbasava/ceph-brain-evolution.•Any (no license)

Status: code verified, 10 files readable, 13 matches

[2166] doi:10.1016/j.isci.2026.116650 [paper]

PTH-induced behavioral and metabolic alterations in mouse models of hyperparathyroidism.

Journal: iScience

Status: code on request

[2167] Code ↔ Paper doi:10.1016/j.neuroimage.2026.122085 [paper, repository]

Lifespan trajectories of the brain's functional complexity characterized by multiscale sample entropy.

Journal: NeuroImage

Authors' code: kayjann/complexity (no license)

Status: code verified, 39 files readable, 2 matches

[2168] doi:10.1016/j.neurot.2026.e01031 [paper, data]

Single-neuron responses to neurostimulation: Insights for epilepsy.

Journal: Neurotherapeutics : the journal of the American Society for Experimental NeuroTherapeutics

Status: data only, 3 datasets cited

[2169] Code ↔ Paper doi:10.1016/j.phro.2026.101056 [paper, repository]

Toward uncertainty-aware manual delineation of brain tumours using eye-tracking and image-derived features.

Journal: Physics and imaging in radiation oncology

Authors' code: gitlab.ethz.ch/bmdslab/publications/oncology/manual-segmentation-uncertainty-using-eyetracking (no license)

Status: code verified, 34 files readable, 7 matches

[2170] doi:10.1016/j.stemcr.2026.102966 [paper]

Optimized chemogenetic ablation and regeneration of enteric nervous system neurons in zebrafish.

Journal: Stem cell reports

Status: code on request

[2171] Code ↔ Paper doi:10.1038/s41467-026-74834-y [paper, repository]

Voltage imaging of CA1 pyramidal cells and SST+ interneurons reveals stability and plasticity mechanisms of spatial firing.

Journal: Nature communications

Authors' code: yoavadamlab (no license)

Status: code verified

[2172] doi:10.1038/s41467-026-75063-z [paper, data]

Loss of Echs1 in neural stem and progenitor cells impairs neurogenesis via ER stress activation and lipid metabolic reprogramming.

Journal: Nature communications

Status: data only, 1 dataset cited

[2173] Code ↔ Paper doi:10.1038/s41531-026-01422-8 [paper, repository]

Lewy pathology largely absent in prefrontal cortices of Parkinson's disease patients undergoing deep brain stimulation.

Journal: NPJ Parkinson's disease

Authors' code: github.mountsinai.org/beckmann-lab/lbp_neuropath (no license)

Status: code found, still to be checked

[2174] Code ↔ Paper doi:10.1038/s41562-026-02486-5 [paper, repository]

Genome-wide association studies of infant and toddler temperament in European and multi-ancestry populations.

Journal: Nature human behaviour

Authors' code: precimed/python_convert (GPL-3.0), PerlineDemange/GeneticNurtureNonCog (no license)

Status: code verified, 54 files readable, 3 matches

[2175] Code ↔ Paper doi:10.1038/s41586-026-10641-1 [paper, repository]

Dual tumour-myeloid targeting of glioblastoma with GPNMB CAR-T cells.

Journal: Nature

Authors' code: NMikolajewicz/Savage-2026 (no license)

Status: code verified, 5 files readable, 5 matches

[2176] Code ↔ Paper doi:10.1038/s41586-026-10671-9 [paper, repository]

Restoring cortical disinhibition improves Huntington's disease phenotypes.

Journal: Nature

Authors' code: Zenodo 20750675 (no license)

Status: dead link

[2177] Code ↔ Paper doi:10.1038/s41586-026-10699-x [paper, repository]

Competing programs shape cortical sensorimotor-association axis development.

Journal: Nature

Authors' code: danjgale/surfplot (BSD-3-Clause), sestanlab/MIND (no license)

Status: code verified, 41 files readable, 8 matches

[2178] Code ↔ Paper doi:10.1038/s41591-026-04485-5 [paper, repository]

Blood-based circular RNAs for early diagnosis of Alzheimer's disease.

Journal: Nature medicine

Authors' code: neurogenomicsandinformatics/rnaseq_pipeline (no license)

Status: code verified, 10 files readable, 2 matches

[2179] Code ↔ Paper doi:10.1038/s41593-026-02365-2 [paper, repository]

Hippocampal theta sweeps indicate goal direction during navigation.

Journal: Nature neuroscience

Authors' code: changmin-yu/goal_directed_theta_sweeps_honeycomb_maze (Apache-2.0)

Status: code verified, 7 files readable, 2 matches

[2180] doi:10.1038/s41598-026-59884-y [paper, data]

Brain-structural differences underlying dialect competence in the bilingual network.

Journal: Scientific reports

Status: data only, 1 dataset cited

[2181] doi:10.1038/s41598-026-59979-6 [paper, data]

From muscles to motion: the role of sensor layout and physiological factors in hand motion decoding.

Journal: Scientific reports

Status: data only, 1 dataset cited

[2182] doi:10.1038/s43018-026-01199-y [paper, data]

IDH1-mutant vaccine in newly diagnosed astrocytoma: final analysis of the multicenter, single-arm, open-label, first-in-human phase 1 NOA16 trial.

Journal: Nature cancer

Status: data only, 1 dataset cited

[2183] Code ↔ Paper doi:10.1073/pnas.2609132123 [paper, repository]

A human lysosomal storage disorder toolkit for decoding proteome landscapes in cortical-like and dopaminergic-like induced neurons.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: sauerkrausi/neuroLSD (MIT)

Status: code verified, 22 files readable, 7 matches

[2184] Code ↔ Paper doi:10.1093/bib/bbag411 [paper, repository]

Screening of cell-type-specific meta-programs for drug repurposing in Alzheimer's disease.

Journal: Briefings in bioinformatics

Authors' code: Zhangyx-q/AD_MPcode (no license)

Status: code verified, 9 files readable, 7 matches

[2185] Code ↔ Paper doi:10.1093/bioinformatics/btag220 [paper, repository]

Riemannian metric learning for alignment of spatial multiomics.

Journal: Bioinformatics (Oxford, England)

Authors' code: raphael-group/MGW (no license), Zenodo 20074368 (CC-BY-4.0)

Status: code verified, 6 files readable, 1 match

[2186] Code ↔ Paper doi:10.1093/brain/awaf426 [paper, repository]

Single-nucleus multiome shows motor neuron glutamate overactivation in amyotrophic lateral sclerosis.

Journal: Brain : a journal of neurology

Authors' code: ertakeuchi/ALS_project (no license)

Status: code verified, 21 files readable, 10 matches

[2187] Code ↔ Paper doi:10.1093/brain/awaf431 [paper, repository]

Behavioural and clinical biomarkers of the human bed nucleus of stria terminalis from direct neural recordings.

Journal: Brain : a journal of neurology

Authors' code: srbsonkusare/bnst_task_dynamics (no license)

Status: code verified, 9 files readable, 7 matches

[2188] doi:10.1093/brain/awaf432 [paper, data]

Global network and local vulnerabilities underlie brain atrophy across Parkinson's disease stages.

Journal: Brain : a journal of neurology

Status: data only, 1 dataset cited

[2189] Code ↔ Paper doi:10.1093/brain/awag080 [paper, repository]

Early glymphatic failure in AppNL-F knock-in mice is linked to parenchymal border macrophages loss.

Journal: Brain : a journal of neurology

Authors' code: kswanberg/osv (no license)

Status: code verified, 30 files readable, 2 matches

[2190] Code ↔ Paper doi:10.1093/braincomms/fcag254 [paper, repository]

Brain age gap as a diffusion MRI-based marker of traumatic brain injury-related brain changes and associated outcomes.

Journal: Brain communications

Authors' code: diciphr-lab (no license)

Status: code verified

[2191] Code ↔ Paper doi:10.1093/cercor/bhag105 [paper, repository]

The tangential growth of the human visual cortex and maternal smoking during pregnancy.

Journal: Cerebral cortex (New York, N.Y. : 1991)

Authors' code: Zenodo 16268986 (Apache-2.0), jacquemontlab/shortvariants-annotation (Apache-2.0)

Status: code verified, 48 files readable, 2 matches

[2192] Code ↔ Paper doi:10.1093/cercor/bhag108 [paper, repository]

Action fluency and conscious intention: being aware of what we are about to do.

Journal: Cerebral cortex (New York, N.Y. : 1991)

Authors' code: Zenodo 13341982 (CC-BY-NC-4.0)

Status: empty repository

[2193] Code ↔ Paper doi:10.1093/cercor/bhag113 [paper, repository]

Long-term reliability and stability of parameterized resting state EEG: evidence from a five-year follow-up.

Journal: Cerebral cortex (New York, N.Y. : 1991)

Authors' code: MindSpaceLab/Aperiodic_Test_Retest_5year (MIT)

Status: code verified, 8 files readable, 4 matches

[2194] Code ↔ Paper doi:10.1093/genetics/iyag107 [paper, repository]

Neural posterior estimation for population genetics.

Journal: Genetics

Authors' code: kr-colab/popgen-npe (MIT)

Status: code verified, 64 files readable, 21 matches

[2195] Code ↔ Paper doi:10.1093/molbev/msag140 [paper, repository]

Segmentally Duplicated Regulatory Elements Undergo Human-Specific Rewiring.

Journal: Molecular biology and evolution

Authors' code: ncbi/sra-tools (other), vertgenlab/gonomics (BSD-3-Clause)

Status: code verified, 2,452 files readable, 5 matches

[2196] Code ↔ Paper doi:10.1093/molbev/msag157 [paper, repository]

Severe bottleneck of ancient Homo populations: insights from computational modeling and relevant fossil evidence.

Journal: Molecular biology and evolution

Authors' code: Zenodo 19435195 (CC-BY-4.0)

Status: code verified

[2197] Code ↔ Paper doi:10.1093/molbev/msag159 [paper, repository]

Genomic signature of repeated transitions to diurnality in spiders.

Journal: Molecular biology and evolution

Authors' code: jiyideanjiao/spider_diel_activity (no license)

Status: empty repository, 1 file readable

[2198] Code ↔ Paper doi:10.1093/nar/gkag454 [paper, repository]

RegRegSEA: a web server for regulatory region set enrichment analysis of epigenomic data.

Journal: Nucleic acids research

Authors' code: CCB-SB/RegRegSEA (MIT), Zenodo 19731482 (MIT)

Status: code verified, 10 files readable, 2 matches

[2199] doi:10.1093/nar/gkag695 [paper, data]

Programmed repair of disease-causing UGA premature termination codons in mammalian brain.

Journal: Nucleic acids research

Status: data only, 1 dataset cited

[2200] Code ↔ Paper doi:10.1093/nar/gkag706 [paper, repository]

scDifformer: diffusion-based post-training for virtual cell modeling across large-scale single-cell data.

Journal: Nucleic acids research

Authors' code: huggingface.co/ctheodoris/geneformer (apache), TencentAILabHealthcare/scBERT (GPL-3.0), biomap-research/scFoundation (Apache-2.0), biomed-AI/CellFM (no license), bowang-lab/scgpt (MIT), broadinstitute/Tangram (BSD-3-Clause), luoyuanlab/stdgcn (no license), Su-informatics-lab/DSTG (MIT), bowang-lab/scGPT-spatial (MIT), huggingface.co/allenxiao/scdifformer (no license)

Status: code verified, 312 files readable, 12 matches

[2201] doi:10.1093/neuonc/noag053 [paper, data]

ONC206 demonstrates potent antitumorigenic activity and is a potential novel therapeutic strategy for high-risk medulloblastoma.

Journal: Neuro-oncology

Status: data only, 1 dataset cited

[2202] Code ↔ Paper doi:10.1093/neuonc/noag068 [paper, repository]

PTBP1 knockdown reprograms glioma stem cells into neuronal-like cells and suppresses tumorigenesis via the DUSP5-ERK1/2 signaling pathway.

Journal: Neuro-oncology

Authors' code: YuhaoMa522/Glioma-CellCounter (no license)

Status: code verified, 4 files readable

[2203] doi:10.1093/neuonc/noag080 [paper, data]

Laser interstitial thermal therapy enhances bidirectional blood-brain barrier permeability in glioblastoma.

Journal: Neuro-oncology

Status: data only, 1 dataset cited

[2204] Code ↔ Paper doi:10.1093/schbul/sbag045 [paper, repository]

Cortical Iron and Mesostriatal Dopamine Function in Schizophrenia: A Positron Emission Tomography and Magnetic Resonance Imaging Study.

Journal: Schizophrenia bulletin

Authors' code: lukevano/KCL_Neuromelanin-MRI (CC-BY-NC-4.0)

Status: code verified, 4 files readable, 2 matches

[2205] Code ↔ Paper doi:10.1093/sleep/zsag123 [paper, repository]

Shared local brain dynamics in pediatric and adult non-rapid eye movement parasomnias.

Journal: Sleep

Authors' code: julama/hdEEG_DOA (no license)

Status: empty repository

[2206] doi:10.1096/fj.202601712r [paper, data]

Time- and Region-Specific Effects of Intranasal Insulin on Oxidative Stress Parameters in the Rat Brain.

Journal: FASEB journal : official publication of the Federation of American Societies for Experimental Biology

Status: data only, 1 dataset cited

[2207] Code ↔ Paper doi:10.1109/tmi.2026.3687982 [paper, repository]

Spatial-Jitter Model for Magnetoencephalography Sensor Arrays.

Journal: IEEE transactions on medical imaging

Authors' code: jiivana/SpatialJitter (MIT)

Status: code verified, 14 files readable, 6 matches

[2208] doi:10.1111/acel.70616 [paper]

Transcriptomic Evidence of Mitochondrial Double-Stranded RNA Accumulation in Brain Aging and Alzheimer's Disease.

Journal: Aging cell

Status: code on request

[2209] doi:10.1111/acel.70622 [paper, data]

High Intrinsic Aerobic Capacity Is Associated With a Distinct Epigenetic and Signaling Profile in the Aged Rat Brain.

Journal: Aging cell

Status: data only, 1 dataset cited

[2210] Code ↔ Paper doi:10.1111/acer.70370 [paper, repository]

Low-Level Alcohol Consumption in Children 11-12 Years Old Is Linked to Neural Substrates Involved in Reward Processing and Inhibitory Control: Results From a Brain-Wide Association Study.

Journal: Alcohol, clinical & experimental research

Authors' code: OSF nshfb (no license)

Status: code verified, 11 files readable, 1 match

[2211] Code ↔ Paper doi:10.1111/adb.70179 [paper, repository]

Transcriptional Response to Chronic Long-Access Fentanyl Self-Administration in Rat Habenula and Amygdala.

Journal: Addiction biology

Authors' code: LieberInstitute/fentanyl_rat_hb_amy (MIT), Zenodo 17573970 (CC-BY-4.0)

Status: code verified, 27 files readable, 12 matches

[2212] Code ↔ Paper doi:10.1111/apha.70264 [paper, repository]

Clustering Properties of Neuronal Ryanodine Receptor 2 and Remodeling in the APP/PS1 Mouse Model of Alzheimer's Disease.

Journal: Acta physiologica (Oxford, England)

Authors' code: david_baddeley/python-microscopy (no license)

Status: dead link

[2213] doi:10.1111/cbdd.70354 [paper, data]

In Silico Drug Repositioning Identifies SYK Kinase Inhibitors as Potential Neuroprotective Agents for Ataxia-Telangiectasia.

Journal: Chemical biology & drug design

Status: data only, 2 datasets cited

[2214] Code ↔ Paper doi:10.1111/desc.70208 [paper, repository]

Computational Modeling of Sequential Dependencies in Mother-Child Social Interaction and Associations to Empathic Responses.

Journal: Developmental science

Authors' code: EMYEYK/Seq.Dep.study (no license)

Status: code verified, 1 file readable

[2215] doi:10.1111/desc.70214 [paper, data]

Hemodynamic Responses to Word Forms in Japanese Infant-Directed Vocabulary in 5- and 9-Month-Old Infants: Early Sensitivity to Prosodic Structure and Emergence of Prosodic Representations.

Journal: Developmental science

Status: data only, 1 dataset cited

[2216] Code ↔ Paper doi:10.1111/ejn.70569 [paper, repository]

Quantifying the Influence of Lexical Surprisal on Acoustic Speech Encoding While Controlling for Within-Speaker Variability.

Journal: The European journal of neuroscience

Authors' code: OSF 756xn (no license)

Status: code verified, 13 files readable, 8 matches

[2217] doi:10.1111/ejn.70597 [paper, data]

Superficial Ventral Premotor Pathways to Primary Motor Cortex Shape the Temporal Coordination of Precision Graspinnog.

Journal: The European journal of neuroscience

Status: data only, 1 dataset cited

[2218] Code ↔ Paper doi:10.1111/ejn.70598 [paper, repository]

Enhanced Time-Locked Decoding for Spoken Words but Not Environmental Sounds in Natural-Like Auditory Conditions.

Journal: The European journal of neuroscience

Authors' code: version.aalto.fi/gitlab/biomag-pipelines (no license)

Status: code verified

[2219] Code ↔ Paper doi:10.1111/ejn.70601 [paper, repository]

Optimising Analysis Choices for Multivariate Decoding: Creating Pseudotrials Using Trial Averaging and Resampling.

Journal: The European journal of neuroscience

Authors' code: OSF hjf75 (no license)

Status: code verified, 4 files readable, 5 matches

[2220] Code ↔ Paper doi:10.1111/ejn.70604 [paper, repository]

The Role of the Glutamate-Glutamine Cycle in Synaptic Transmission During Ischemia and Recovery.

Journal: The European journal of neuroscience

Authors' code: HannahvanSusteren3/GGsyntrans (no license)

Status: code verified, 7 files readable, 6 matches

[2221] Code ↔ Paper doi:10.1111/ejn.70608 [paper, repository]

The Brain Response to Reflectional Symmetry Is Not Uniquely Preattentive.

Journal: The European journal of neuroscience

Authors' code: OSF 2sncj (no license)

Status: code verified, 28 files readable

[2222] doi:10.1111/ejn.70615 [paper, data]

Sleep Oscillations Across Cortical, Subcortical and Cerebellar Structures in Magnetoencephalography.

Journal: The European journal of neuroscience

Status: data only, 1 dataset cited

[2223] Code ↔ Paper doi:10.1111/ejn.70638 [paper, repository]

Autism Spectrum Disorder-Associated Genes Enrich in Discrete Cortical, Limbic and Cerebellar Brain Regions.

Journal: The European journal of neuroscience

Authors' code: LorenzoOdierna/Analysis-Tool-for-Local-Association-of-Neuronal-Transcript-Expression-ATLANTE (no license), LorenzoOdierna/Analysis-Tool-for-Local-Association-of-Neuronal-Transcript-Expression-ATLANTE- (no license)

Status: code verified, 2 files readable

[2224] Code ↔ Paper doi:10.1111/ejn.70639 [paper, repository]

Action Intentions Shape Task- and Phase-Specific Integration of Object Features.

Journal: The European journal of neuroscience

Authors' code: OSF 6fq9h (no license)

Status: code verified, 1 file readable, 1 match

[2225] doi:10.1111/ene.70699 [paper, data]

A Novel RORA Hinge-Region Variant in Adult IDDECA With Cerebellar Atrophy and Marked Response to Valproate.

Journal: European journal of neurology

Status: data only, 1 dataset cited

[2226] Code ↔ Paper doi:10.1111/infa.70114 [paper, repository]

Statistics in Motion: Does the Infant Motor System Predict Actions Based on Their Transitional Probability?

Journal: Infancy : the official journal of the International Society on Infant Studies

Authors' code: TommasoGhilardi/Statistics-in-Motion (no license)

Status: code verified, 19 files readable, 2 matches

[2227] Code ↔ Paper doi:10.1111/jcmm.71280 [paper, repository]

Rapamycin Partially Reverts Cavernoma Endothelial Cell Phenotype and, When Combined With Lapatinib, Ameliorates Chronic Lesions.

Journal: Journal of cellular and molecular medicine

Authors' code: dvidmd/GSE298723_Differential_Gene_Expression_Analysis_Garcia_Colomer_et_al (no license)

Status: code verified, 12 files readable, 2 matches

[2228] Code ↔ Paper doi:10.1111/jnc.70502 [paper, repository]

The Converging Effects of Different Categories of Antidepressants on the Brain: A Systematic Meta-Analysis of Public Transcriptional Profiling Data From the Hippocampus and Cortex.

Journal: Journal of neurochemistry

Authors' code: evageoghegan/AntidepressantMetaAnalysis (no license)

Status: code verified, 47 files readable, 22 matches

[2229] doi:10.1111/jne.70230 [paper, data]

Single-nuclei RNA sequencing reveals heterogeneity within developing GnRH3 neurons in zebrafish.

Journal: Journal of neuroendocrinology

Status: data only, 1 dataset cited

[2230] Code ↔ Paper doi:10.1111/jon.70139 [paper, repository]

A Task-Based Functional MRI Double Dissociation of Visual Language and Feature Processing in Healthy Adults.

Journal: Journal of neuroimaging : official journal of the American Society of Neuroimaging

Authors' code: Zenodo 4281551 (other-open), cnos-lab/woodward_atlas (no license)

Status: code verified, 2 files readable

[2231] Code ↔ Paper doi:10.1111/nyas.70314 [paper, repository]

Neural Oscillatory Dynamics in Joint Action: Dissociable Roles of Entrainment and Beta Modulation in Self-Other Integration.

Journal: Annals of the New York Academy of Sciences

Authors' code: mattiaRosso92/Oscillatory_Dynamics_Joint_Action (no license)

Status: code verified, 6 files readable, 15 matches

[2232] Code ↔ Paper doi:10.1111/nyas.70327 [paper, repository]

Wired for Corruption: Inter-Brain Synchrony Encodes Bribery-Related Value Information and Predicts Bribery Agreement.

Journal: Annals of the New York Academy of Sciences

Authors' code: OSF xvkft (no license)

Status: code verified, 2 files readable

[2233] Code ↔ Paper doi:10.1111/psyp.70341 [paper, repository]

The Brain Signature of Reward Processing During Cooperative Gaming.

Journal: Psychophysiology

Authors' code: kpm-floesch/niceTFRplot (MIT)

Status: code verified, 3 files readable

[2234] doi:10.1111/psyp.70349 [paper, data]

Model-Free and Model-Based Learning in Human Fear Conditioning.

Journal: Psychophysiology

Status: data only, 1 dataset cited

[2235] Code ↔ Paper doi:10.1111/psyp.70354 [paper, repository]

The Absent P3a. Performance Monitoring ERPs Differentiate Trust in Humans and Autonomous Systems.

Journal: Psychophysiology

Authors' code: Zenodo 7535495 (other-open), palday/philistine (BSD-3-Clause)

Status: code verified, 30 files readable, 1 match

[2236] doi:10.1111/psyp.70360 [paper, data]

The Effect of Task Demand on EEG Responses to Irrelevant Sound and Speech in Simulated Surgical Environments.

Journal: Psychophysiology

Status: data only, 2 datasets cited

[2237] Code ↔ Paper doi:10.1111/psyp.70362 [paper, repository]

Pupil Constriction Causes Activity in the Human Retina and Visual System.

Journal: Psychophysiology

Authors' code: OSF 2u6jv (no license)

Status: code verified, 3 files readable

[2238] doi:10.1111/psyp.70365 [paper, data]

Brain Association Studies in 2024: A Systematic Review of Sample Sizes and Preregistrations.

Journal: Psychophysiology

Status: data only, 1 dataset cited

[2239] Code ↔ Paper doi:10.1117/1.bios.3.3.035001 [paper, repository]

Transient infrared laser exposure modulates calcium activity in cortical dendritic spines.

Journal: Biophotonics discovery

Authors' code: PanPandaPan615/Photothermal-Spine-Activity (no license)

Status: code verified, 7 files readable, 8 matches

[2240] Code ↔ Paper doi:10.1117/1.nph.13.3.035005 [paper, repository]

Extending effective multiplicity for independent designs in multichannel fNIRS studies.

Journal: Neurophotonics

Authors' code: Dan-brain-Lab (no license)

Status: code verified

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