Every paper, by date: page 12

44,644 papers with a page: 24,189 with their authors' code, 4,955 with code on request, 15,495 with data only. The most recent first, 224 a page. Page 12 of 200: 24 June 2026 to 17 June 2026.

Wednesday, 24 June 2026 (51 papers, 25 on this page)

[2465] doi:10.1080/19490976.2026.2689121 [paper, data]

Microbiome-driven alterations in tryptophan metabolism contribute to behavioral comorbidities in the Muc2 knockout mouse model of chronic colitis.

Journal: Gut microbes

Status: data only, 1 dataset cited

[2466] Code ↔ Paper doi:10.1093/braincomms/fcag235 [paper, repository]

Association between glymphatic dysfunction and glucose hypometabolism in chronic disorders of consciousness: a multimodal PET/MRI study.

Journal: Brain communications

Authors' code: gbarisano/alps (MIT)

Status: code verified, 3 files readable, 2 matches

[2467] Code ↔ Paper doi:10.1093/braincomms/fcag236 [paper, repository]

Dynamic, state-dependent characteristics of cognitive fluctuations in Lewy body dementia: a magnetoencephalography study.

Journal: Brain communications

Authors' code: sadeqi60/MEG_HMM_LBD (no license)

Status: code verified, 23 files readable, 7 matches

[2468] Code ↔ Paper doi:10.1093/braincomms/fcag238 [paper, repository]

Substantia Nigra MRI markers are lower in Alzheimer's disease and are linked to general cognitive function.

Journal: Brain communications

Authors' code: frikro/SN-Novelty-Brain-Comm (no license)

Status: code verified, 7 files readable

[2469] Code ↔ Paper doi:10.1097/j.pain.0000000000004044 [paper, repository]

No effect of rhythmic visual stimulation on experimental pain perception.

Journal: Pain

Authors' code: mpcoll/2025_painrvs (no license)

Status: code verified, 11 files readable, 8 matches

[2470] Code ↔ Paper doi:10.1126/sciadv.adx5046 [paper, repository]

Coordinated hand movement sensation revealed through an implanted magnetic prosthetic kinesthetic interface.

Journal: Science advances

Authors' code: Zenodo 17260640 (CC-BY-4.0), apeparrot/myokinetic-kinesthetic-interface (no license)

Status: code verified, 152 files readable, 8 matches

[2471] doi:10.1126/sciadv.ady0256 [paper, data]

Isoform-specific steric zippers drive aberrant assembly and mislocalization of shortened TDP-43.

Journal: Science advances

Status: data only, 1 dataset cited

[2472] Code ↔ Paper doi:10.1126/sciadv.aec9837 [paper, repository]

AI-driven tripartite classification for optimizing wearable bioelectronics in depression management.

Journal: Science advances

Authors' code: figshare 31813771 (CC-BY-4.0)

Status: code verified, 3 files readable

[2473] doi:10.1136/jitc-2025-014421 [paper, data]

Spatial immune atlas of breast cancer brain metastasis reveals CD163<sup>+</sup> macrophage reprogramming associated with immune escape.

Journal: Journal for immunotherapy of cancer

Status: data only, 2 datasets cited

[2474] doi:10.1186/s12866-026-05296-x [paper, data]

Gut bacterial characteristics in children with autism spectrum disorder according to symptom severity: a cross-sectional study.

Journal: BMC microbiology

Status: data only, 1 dataset cited

[2475] Code ↔ Paper doi:10.1186/s12916-026-05014-4 [paper, repository]

Targeting the posterior thalamic hub: hemispheric-specific encoding of pain-depression comorbidity after hemorrhagic stroke.

Journal: BMC medicine

Authors' code: demianw/tract_querier (BSD-3-Clause)

Status: code verified, 39 files readable

[2476] Code ↔ Paper doi:10.1186/s13059-026-04125-8 [paper, repository]

MLMarker: a machine learning framework for tissue inference and biomarker discovery.

Journal: Genome biology

Authors' code: TineClaeys/MLMarker-manuscript (no license), TineClaeys/MLMarker (Apache-2.0), TineClaeys/MLMarker-streamlit (Apache-2.0)

Status: code verified, 54 files readable, 34 matches

[2477] doi:10.1371/journal.pone.0350120 [paper, data]

Survival and factors associated with intensive care unit mortality among adults with impaired consciousness in Benin, a low-resource setting: A retrospective cohort study.

Journal: PloS one

Status: data only, 1 dataset cited

[2478] Code ↔ Paper doi:10.1371/journal.pone.0351872 [paper, repository]

Decoding visual object recognition from EEG signals.

Journal: PloS one

Authors' code: Promise-Z5Q2SQ/EEG-ImageNet-Dataset (MIT), anniekang1112/eeg-imagenet-visual-decoding (MIT), Zenodo 20617271 (MIT)

Status: code verified, 40 files readable, 18 matches

[2479] doi:10.2196/83790 [paper, data]

Explainable and Interpretable AI for Voice and Speech Analysis in Clinical Care: Systematic Review.

Journal: Journal of medical Internet research

Status: data only, 2 datasets cited

[2480] Code ↔ Paper doi:10.3389/fncom.2026.1810942 [paper, repository]

The structural grammar of integration and competition in the human connectome.

Journal: Frontiers in computational neuroscience

Authors' code: aaronclauset.github.io/wsbm (no license)

Status: code verified

[2481] Code ↔ Paper doi:10.3389/fneur.2026.1783194 [paper, repository]

Assessment of cerebral hemodynamics in patients with acute brain injury: a group-based multivariate trajectory approach.

Journal: Frontiers in neurology

Authors' code: Nicholas2074/1002-stat (no license), Nicholas2074/1002-data (no license)

Status: code verified, 17 files readable, 1 match

[2482] doi:10.3389/fneur.2026.1808769 [paper, data]

Pre-treatment structural brain biomarkers predict response to repetitive transcranial magnetic stimulation in subjective tinnitus.

Journal: Frontiers in neurology

Status: data only, 1 dataset cited

[2483] doi:10.3389/fphys.2026.1844142 [paper, data]

CRISPR/Cas9-mediated <i>PHOX2B</i> functional knock-out in IMR32 neuroblastoma cells impairs neuronal excitability through dysregulation of ion channels genes.

Journal: Frontiers in physiology

Status: data only, 1 dataset cited

[2484] doi:10.3390/ijms27135711 [paper]

Role of Supraspinal Neuroinflammation in Chronic Pain After Experimental Spinal Cord Injury-A Systematic Review.

Journal: International journal of molecular sciences

Status: data only

[2485] Code ↔ Paper doi:10.3390/ijms27135713 [paper, repository]

Chronic Administration of Marinobufagenin in Mice Causes Hyperlocomotion and Decrease in Anxiety by Altering Monoamine Turnover Unaccompanied by Motor Deficits or Oxidative Stress.

Journal: International journal of molecular sciences

Authors' code: OSF 4rtsg (no license)

Status: code verified, 7 files readable, 10 matches

[2486] Code ↔ Paper doi:10.3390/jimaging12070276 [paper, repository]

Hyperelastic Regularization for Near-Diffeomorphic Transformer-Based Brain MRI Registration.

Journal: Journal of imaging

Authors' code: Zzxmh/HypEReg-TransMorph (MIT), Zenodo 19888526 (MIT), Zenodo 20113717 (MIT)

Status: code verified, 287 files readable, 20 matches

[2487] Code ↔ Paper doi:10.3390/s26134004 [paper, repository]

Automated Anxiety Detection System Integrating a Brain-Computer Interface for Neurofeedback Applications.

Journal: Sensors (Basel, Switzerland)

Authors' code: colab.research.google.com/drive/1ackfhtosbynpzmgzfyyjydxcereygdrt (no license), colab.research.google.com/drive/1bwge17lzzzbqpqy--yjyly8gknistdup (no license), colab.research.google.com/drive/18uq_00ynr0mot1d6nharwoxo9rwavtny (no license)

Status: code verified

[2488] Code ↔ Paper doi:10.3390/s26134019 [paper, repository]

NeuroStat: An Open-Source EEG Connectivity Platform for Randomised Controlled Trials.

Journal: Sensors (Basel, Switzerland)

Authors' code: ghani097/NeuroStat-for-RCTs (no license)

Status: code verified, 22 files readable, 32 matches

[2489] Code ↔ Paper doi:10.7554/elife.110294 [paper, repository]

Arousal modulates functional connectivity through structured and hemispherically asymmetric community architecture during wakefulness.

Journal: eLife

Authors' code: kongxy6478/Arousal-modulates-functional-connectivity (MIT)

Status: code verified, 6 files readable, 7 matches

Tuesday, 23 June 2026 (31 papers)

[2490] doi:10.1007/s11060-026-05635-y [paper]

From relapse to survival: real-world clinical impact of a multimodal approach in first-time recurrent glioblastoma : FROST: multimodal treatment for GBM recurrence.

Journal: Journal of neuro-oncology

Status: code on request

[2491] Code ↔ Paper doi:10.1016/j.cell.2026.05.047 [paper, repository]

An emergent disease-associated motor neuron state precedes cell death in ALS.

Journal: Cell

Authors' code: omgautier/Gautier_Blum_2026 (no license)

Status: code verified, 14 files readable, 40 matches

[2492] doi:10.1016/j.isci.2026.116473 [paper]

Belief updating in uncertain environments is differentially sensitive to reward and punishment learning: Evidence from ERP.

Journal: iScience

Status: code on request

[2493] doi:10.1016/j.isci.2026.116478 [paper]

Deletion of Snap25 disrupts glial remodeling in aging mouse brain.

Journal: iScience

Status: code on request

[2494] doi:10.1016/j.isci.2026.116484 [paper, data]

Molecular taxonomy and spatial organization define neuronal subtypes in the mouse inferior colliculus.

Journal: iScience

Status: code on request, 1 dataset cited

[2495] Code ↔ Paper doi:10.1016/j.isci.2026.116485 [paper, repository]

MicroFace maps microglial morphology remodeling, revealing spatial zones and bifurcated trajectories during brain microinjury recovery.

Journal: iScience

Authors' code: Vatsjari/MicroFace (no license), 3DBMandNE-Lab/MicroFace (no license), Zenodo 20325902 (CC-BY-4.0)

Status: code verified, 21 files readable, 7 matches

[2496] Code ↔ Paper doi:10.1016/j.nbscr.2026.100149 [paper, repository]

Molecular correlates of sleep deprivation in the mouse brain identified by meta-analysis of microarray data.

Journal: Neurobiology of sleep and circadian rhythms

Authors' code: FHSProject139/FSH-Project-Notebooks-and-Files (no license), ohabdalla1/Dexras1_Behavioural_Sleep (MIT)

Status: code verified, 32 files readable

[2497] Code ↔ Paper doi:10.1016/j.neuroimage.2026.122074 [paper, repository]

MindGrab: A spectrally-motivated architecture for accessible deep learning in neuroimaging.

Journal: NeuroImage

Authors' code: neurolabusc/broccolini (LGPL-2.1)

Status: code verified, 288 files readable

[2498] doi:10.1016/j.ynirp.2026.100375 [paper, data]

Deep learning-based identification of causative genes in lissencephaly using 3D-MRI volumetric datasets.

Journal: Neuroimage. Reports

Status: data only, 1 dataset cited

[2499] Code ↔ Paper doi:10.1021/acsphotonics.5c02836 [paper, repository]

A Dispersive Image Scanning Microscope for Multi-color High-resolution Imaging.

Journal: ACS photonics

Authors' code: ebensteinLab/SPECIALS (MIT), ebensteinLab (no license)

Status: code verified, 16 files readable, 1 match

[2500] Code ↔ Paper doi:10.1038/s41398-026-04189-x [paper, repository]

Decomposing neuroanatomical heterogeneity in depression: insights from an ENIGMA major depressive disorder working group study in 5146 individuals.

Journal: Translational psychiatry

Authors' code: lusemp/decomposing-neuroanatomical-heterogeneity-in-depression-preprocessing-harmonization-code- (no license)

Status: code verified, 2 files readable, 2 matches

[2501] Code ↔ Paper doi:10.1038/s41398-026-04199-9 [paper, repository]

Immune cell-specific genetic architecture of Alzheimer's disease revealed by multi-omics analysis for therapeutic target discovery and prioritization.

Journal: Translational psychiatry

Authors' code: DeepVasc-Lab/3-step_sceQTLMR (Apache-2.0)

Status: code verified, 3 files readable, 1 match

[2502] Code ↔ Paper doi:10.1038/s41467-026-74002-2 [paper, repository]

Learning missing physics from legacy simulators with alternating neural integrators.

Journal: Nature communications

Authors' code: shanxue-w/ANI (MIT)

Status: code verified, 225 files readable, 4 matches

[2503] Code ↔ Paper doi:10.1038/s41467-026-74171-0 [paper, repository]

Cluster replicability in single-cell and single-nucleus atlases of the mouse brain.

Journal: Nature communications

Authors' code: gillislab/mouse_brain_cluster_replicability (MIT), Zenodo 19901057 (MIT)

Status: code verified, 52 files readable, 18 matches

[2504] Code ↔ Paper doi:10.1038/s41467-026-74455-5 [paper, repository]

Neuron type-specific translatomes in dorsal hippocampus during early memory consolidation.

Journal: Nature communications

Authors' code: Oli-Mauricio/Oliveira_etal_2026 (no license)

Status: code verified, 5 files readable, 9 matches

[2505] Code ↔ Paper doi:10.1038/s41467-026-74569-w [paper, repository]

Motor cortex directly excites the substantia nigra pars reticulata, the basal ganglia output nucleus.

Journal: Nature communications

Authors' code: wstho/brainblenda (GPL-3.0)

Status: code verified, 5 files readable

[2506] Code ↔ Paper doi:10.1038/s41467-026-74769-4 [paper, repository]

Amphibian-inspired neuromorphic dynamic vision systems based on ferroelectric field-effect transistor.

Journal: Nature communications

Authors' code: Zenodo 20457125 (CC-BY-4.0)

Status: code verified, 7 files readable

[2507] doi:10.1038/s41598-026-59052-2 [paper]

A machine learning framework for multimodal temporal prediction of neurological outcome after out-of-hospital cardiac arrest.

Journal: Scientific reports

Status: code on request

[2508] Code ↔ Paper doi:10.1161/jaha.125.046088 [paper, repository]

Systematic Identification of Therapeutic Targets and Repurposed Drugs for Stroke: From Genome Causal Analysis to Multilevel Validation.

Journal: Journal of the American Heart Association

Authors' code: AzumitoAsneuet112358/MR-Target-in-STROKE (no license)

Status: dead link

[2509] doi:10.1186/s12936-026-05981-2 [paper, data]

Plasmodium-induced disruption of brain endothelial barrier integrity in vitro and in mice is prevented by inhibitors of farnesyltransferase.

Journal: Malaria journal

Status: data only, 1 dataset cited

[2510] Code ↔ Paper doi:10.1186/s40337-026-01671-1 [paper, repository]

Aberrant large- and mesoscale network segregation and integration in bulimia nervosa.

Journal: Journal of eating disorders

Authors' code: guoweiwuorgin/BN_Large_scale_network_Seg_Integ (no license)

Status: code verified, 13 files readable, 5 matches

[2511] Code ↔ Paper doi:10.1186/s40708-026-00314-0 [paper, repository]

A quantitative and precision‑oriented neuronal reconstruction approach based on data grading.

Journal: Brain informatics

Authors' code: Brainsmatics/pMatch_code (Apache-2.0)

Status: code verified, 1 file readable

[2512] Code ↔ Paper doi:10.1371/journal.pbio.3003816 [paper, repository]

Sleep deprivation increases levels of the synaptic density marker SV2A in the human brain.

Journal: PLoS biology

Authors' code: Zenodo 20033920 (CC-BY-4.0)

Status: code verified

[2513] Code ↔ Paper doi:10.1371/journal.pbio.3003818 [paper, repository]

Human neuronal firing varies with the frequency of local field potential oscillations.

Journal: PLoS biology

Authors' code: Zenodo 19860065 (CC-BY-4.0)

Status: code verified, 2,005 files readable, 1 match

[2514] Code ↔ Paper doi:10.1371/journal.pone.0352191 [paper, repository]

Bayesian Uncertainty-aware Deep Learning with noisy labels: Tackling annotation ambiguity in EEG seizure detection.

Journal: PloS one

Authors' code: deeksha-ms/BUNDL (no license)

Status: code verified, 144 files readable, 5 matches

[2515] doi:10.1371/journal.pone.0352320 [paper, data]

Additive effect of tDCS and neuromotor recruitment on functional recovery in chronic paraplegia: A randomized controlled trial.

Journal: PloS one

Status: data only, 1 dataset cited

[2516] Code ↔ Paper doi:10.21203/rs.3.rs-9914946/v1 [paper, repository]

Neural manifolds in spinal networks that orchestrate walking and stopping

Journal: Research Square (preprint)

Authors' code: BergLab/ManifoldsofWalking (GPL-3.0)

Status: code verified, 23 files readable, 2 matches

[2517] Code ↔ Paper doi:10.3389/fcogn.2026.1839153 [paper, repository]

A standardized non-linear approach to studying menstrual cycle effects on brain and behavior.

Journal: Frontiers in cognition

Authors' code: macklab/cyclepoint (no license)

Status: code verified, 3 files readable, 1 match

[2518] doi:10.3389/fimmu.2026.1852083 [paper, data]

Astrocyte-derived HMGB1 compromises the integrity of the blood-brain barrier through the CaM/CaMKII/AQP4 pathway and the protective function of trifluoperazine.

Journal: Frontiers in immunology

Status: data only, 1 dataset cited

[2519] doi:10.3389/fnins.2026.1849896 [paper, data]

Dynamic changes of gut microbiota during progression of three Alzheimer's disease mice models.

Journal: Frontiers in neuroscience

Status: data only, 1 dataset cited

[2520] doi:10.64898/2026.06.21.26356048 [paper]

Changes in hierarchical brain dynamics of rumination following mindfulness-based cognitive therapy for depression

Journal: medRxiv (preprint)

Status: code on request

Monday, 22 June 2026 (41 papers)

[2521] Code ↔ Paper doi:10.1002/acn3.70458 [paper, repository]

The Multiple Sclerosis Severity Allele rs10191329<sup>A</sup> and Cognitive Function: A UK Biobank Study.

Journal: Annals of clinical and translational neurology

Authors' code: izimianiti/UKB-MS-severity-allele-cognition (no license)

Status: empty repository

[2522] Code ↔ Paper doi:10.1002/advs.202522762 [paper, repository]

Enhancing Maturation of Human Neuromuscular Organoids via Electrical Stimulation.

Journal: Advanced science (Weinheim, Baden-Wurttemberg, Germany)

Authors' code: Gouti-Lab/EPS-Project (MIT), HelmholtzAI-Consultants-Munich/NMOs-Contraction (no license)

Status: code verified, 21 files readable, 18 matches

[2523] doi:10.1002/advs.202524167 [paper, data]

Lilrb4a Suppression Reprograms Microglia to Mitigate APOE4-Associated Amyloid Plaques and Cerebral Amyloid Angiopathy in Association With a PPAR-Linked Pro-Clearance State.

Journal: Advanced science (Weinheim, Baden-Wurttemberg, Germany)

Status: data only, 1 dataset cited

[2524] Code ↔ Paper doi:10.1016/j.dcn.2026.101769 [paper, repository]

Differential adolescent neurodevelopment of emotion processing across internalizing psychopathology and childhood adversity.

Journal: Developmental cognitive neuroscience

Authors' code: braveresearchcenter/ceda (no license), OSF qyg6k (no license)

Status: code verified, 6 files readable, 8 matches

[2525] Code ↔ Paper doi:10.1016/j.isci.2026.116408 [paper, repository]

Epilepsy-IEDs: An automated machine learning model for detecting interictal epileptiform discharges from scalp electroencephalograms.

Journal: iScience

Authors' code: ylooliu/Epilepsy-IEDs (no license), Zenodo 20404907 (CC-BY-4.0), trekhleb/machine-learning-octave (MIT), ajaiantilal/randomforest-matlab (no license)

Status: code verified, 87 files readable, 2 matches

[2526] Code ↔ Paper doi:10.1016/j.xgen.2026.101284 [paper, repository]

NERINE reveals rare variant associations in gene networks across phenotypes and implicates an SNCA-PRL-LRRK2 subnetwork in Parkinson's disease.

Journal: Cell genomics

Authors' code: snz20/NERINE (CC-BY-NC-ND-4.0), Zenodo 19209293 (CC-BY-4.0), snz20/RVTT (MIT), Zenodo 10627549 (CC-BY-4.0)

Status: code verified, 26 files readable, 11 matches

[2527] Code ↔ Paper doi:10.1016/j.ynirp.2026.100376 [paper, repository]

Ambiguity tolerance and resting-state functional connectivity: A preregistered conceptual replication in a Japanese sample.

Journal: Neuroimage. Reports

Authors' code: OSF 84ev5 (no license)

Status: code verified, 7 files readable, 3 matches

[2528] doi:10.1038/s41398-026-04214-z [paper]

Regulation of oligodendrocyte metabolism and myelination by acetyl-L-carnitine in a mouse model of post-weaning social isolation.

Journal: Translational psychiatry

Status: code on request

[2529] doi:10.1038/s41419-026-09021-4 [paper, data]

ACLY alleviates cerebral ischemia/reperfusion injury by reducing oxidative stress and enhancing mitochondrial function via histone acetylation.

Journal: Cell death & disease

Status: data only, 1 dataset cited

[2530] Code ↔ Paper doi:10.1038/s41467-026-73947-8 [paper, repository]

Frontal cortex organization supporting audiovisual processing during naturalistic viewing.

Journal: Nature communications

Authors' code: flinkerlab/audiovisual_frontal_organization (MIT)

Status: code verified, 6 files readable, 4 matches

[2531] Code ↔ Paper doi:10.1038/s41467-026-74028-6 [paper, repository]

Solving the Hubbard model with neural quantum states.

Journal: Nature communications

Authors' code: codeocean:9301616 (no license)

Status: code found, still to be checked

[2532] Code ↔ Paper doi:10.1038/s41467-026-74099-5 [paper, repository]

Right amygdala ablation reduces maladaptive negative interpretation bias and symptoms in a patient with post-traumatic stress disorder.

Journal: Nature communications

Authors' code: OSF 63tym (no license), Zenodo 7486842 (MIT), neurotechcenter/vera (MIT)

Status: code verified, 999 files readable, 5 matches

[2533] Code ↔ Paper doi:10.1038/s41467-026-74541-8 [paper, repository]

SECmeres outperform extracellular vesicles as potential blood RNA biomarkers for Alzheimer's disease.

Journal: Nature communications

Authors' code: eegk/EVP-RNA-outperforms-extracellular-vesicles-as-blood-biomarkers-for-Alzheimer-disease (no license)

Status: dead link

[2534] Code ↔ Paper doi:10.1038/s41588-026-02646-3 [paper, repository]

Co-expression-based models improve eQTL predictions for transcriptome-wide association studies and highlight new schizophrenia-associated genes.

Journal: Nature genetics

Authors' code: Zenodo 14959416 (MIT), fabiana1rossi/coTWAS (MIT), hakyimlab/MetaXcan (MIT), roussoslab/epixcan (no license)

Status: code verified, 306 files readable, 18 matches

[2535] Code ↔ Paper doi:10.1038/s41592-026-03111-z [paper, repository]

A cloud-based miniscope for neurosurveillance of brain health and disease in freely behaving animals.

Journal: Nature methods

Authors' code: codeocean:4182092 (no license)

Status: code found, still to be checked

[2536] Code ↔ Paper doi:10.1038/s41598-026-58491-1 [paper, repository]

Cross-attention guided explainable deep transformer model for multi-level classification of rare neurological disorders using MRI images.

Journal: Scientific reports

Authors' code: researcher010-debug/NeurologicalDisorderClassification (no license)

Status: code verified, 5 files readable, 3 matches

[2537] Code ↔ Paper doi:10.1038/s41598-026-58505-y [paper, repository]

Remoteness sensitive theta network dynamics during early autobiographical memory access.

Journal: Scientific reports

Authors' code: Zenodo 20633675 (CC-BY-4.0), carla94/Remoteness-sensitive-theta-network-dynamics-during-early-autobiographical-memory-access (no license)

Status: code verified, 32 files readable, 8 matches

[2538] Code ↔ Paper doi:10.1038/s41598-026-58885-1 [paper, repository]

Forward model of rat electroencephalogram: influence of inhomogeneous and anisotropic skull.

Journal: Scientific reports

Authors' code: VlastaKoudelka/skull-leadfield (no license)

Status: code verified, 4 files readable, 2 matches

[2539] doi:10.1073/pnas.2530123123 [paper, data]

Individual differences in speech monitoring: Functional and structural correlates of delayed auditory feedback.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 1 dataset cited

[2540] Code ↔ Paper doi:10.1073/pnas.2531706123 [paper, repository]

Metabolism-weighted brain connectome reveals synaptic integration and vulnerability to neurodegeneration.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: SarahMorgan/Morphometric_Similarity_SZ (MIT), NeuroenergeticsLab/metabolism_weighted_centrality (MIT)

Status: code verified, 12 files readable, 12 matches

[2541] Code ↔ Paper doi:10.1093/braincomms/fcag204 [paper, repository]

Altered rhythmic and arrhythmic electroencephalographic activity during non-rapid eye movement sleep in amnestic mild cognitive impairment.

Journal: Brain communications

Authors' code: AlexLaf11/eeg-nrem-amci (no license)

Status: code verified, 59 files readable

[2542] Code ↔ Paper doi:10.1093/sleepadvances/zpag065 [paper, repository]

Brain-wide properties of slow waves across vigilance states.

Journal: Sleep advances : a journal of the Sleep Research Society

Authors' code: bushlab-ucl/slowWaveDetection (MIT)

Status: code verified, 5 files readable, 1 match

[2543] doi:10.1128/iai.00231-26 [paper, data]

Group B streptococcal membrane vesicles induce proinflammatory responses in neonatal meninges.

Journal: Infection and immunity

Status: data only, 1 dataset cited

[2544] doi:10.1162/imag.a.1281 [paper, data]

Syntactic processing engages the semantic control network.

Journal: Imaging neuroscience (Cambridge, Mass.)

Status: data only, 1 dataset cited

[2545] Code ↔ Paper doi:10.1162/imag.a.1282 [paper, repository]

Metabolic syndrome severity and the energetic cost of brain network transitions: A normative modeling study of accelerated brain aging.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: phs9416/UKB_MetS_NCT (no license)

Status: code verified, 13 files readable, 10 matches

[2546] doi:10.1186/s13195-026-02121-5 [paper, data]

HDAC7 acts as an astrocytic mediator of Aβ pathology that directly engages IKK to drive astrocyte neurotoxicity and neurodegeneration in Alzheimer's disease.

Journal: Alzheimer's research & therapy

Status: data only, 1 dataset cited

[2547] doi:10.1186/s13293-026-00941-6 [paper, data]

Prenatal BPA exposure perturbs RNA-binding protein-mediated splicing regulation and synaptogenesis in the developing cerebellum in a sex-dependent manner.

Journal: Biology of sex differences

Status: data only, 10 datasets cited

[2548] Code ↔ Paper doi:10.1242/bio.062604 [paper, repository]

Cat brains age like humans: translating time shows pet cats live to be natural models for human aging.

Journal: Biology open

Authors' code: supp:PMC13382973/biolopen-15-062604-Dataset1.zip (no license), supp:PMC13382973/biolopen-15-062604-Dataset2.zip (no license), supp:PMC13382973/biolopen-15-062604-Dataset3.zip (no license), supp:PMC13382973/biolopen-15-062604-Dataset4.zip (no license)

Status: code verified, 3 files readable, 5 matches

[2549] Code ↔ Paper doi:10.1242/dev.205342 [paper, repository]

Proteomic profile of hippocampal growth cones through early postnatal development.

Journal: Development (Cambridge, England)

Authors' code: Quattrocolo-Lab/krause-et-al-2026 (MIT), gaospecial/ggVennDiagram (GPL-3.0), mbojan/alluvial (other)

Status: code verified, 71 files readable, 13 matches

[2550] Code ↔ Paper doi:10.1371/journal.pbio.3003873 [paper, repository]

Distinct sources of decision-related signals in visual cortex are represented in different local field potential bands.

Journal: PLoS biology

Authors' code: Zenodo 20583873 (MIT), yueyuesapphirehou/LFP_choice_probability (MIT)

Status: code verified, 38 files readable, 8 matches

[2551] Code ↔ Paper doi:10.1371/journal.pcbi.1014340 [paper, repository]

pyhgf: A neural network library for predictive coding.

Journal: PLoS computational biology

Authors' code: ComputationalPsychiatry/pyhgf (MIT), probml/dynamax (MIT)

Status: code verified, 301 files readable, 4 matches

[2552] doi:10.1371/journal.pone.0349951 [paper, data]

Disentangling crossing fibers with advanced dMRI methods reveals bundle-specific degeneration across the visual system in asymmetric glaucoma.

Journal: PloS one

Status: data only, 1 dataset cited

[2553] Code ↔ Paper doi:10.1371/journal.pone.0351953 [paper, repository]

GL-Net: A knowledge-guided Gaussian-gated and layered refinement network for 3D MRI segmentation of brain gliomas.

Journal: PloS one

Authors' code: Turing17/GL-Net (no license)

Status: empty repository, 1 file readable

[2554] Code ↔ Paper doi:10.1523/eneuro.0344-25.2026 [paper, repository]

Long-Term Variability in Visual Processing versus Perceptual Stability.

Journal: eNeuro

Authors' code: laurabpaulsen/VisualVariability (no license)

Status: code verified, 28 files readable, 2 matches

[2555] Code ↔ Paper doi:10.1523/jneurosci.0154-26.2026 [paper, repository]

Faster but less precise: expectation enhances response speed while reducing sensory fidelity.

Journal: The Journal of neuroscience : the official journal of the Society for Neuroscience

Authors' code: OSF nekp7 (no license)

Status: code verified, 50 files readable, 9 matches

[2556] doi:10.2147/ijgm.s605071 [paper, data]

Mendelian Randomization and Single-Cell RNA Sequencing Reveal CKAP4 and PFDN5 as Tumor Cell-Specific Causal Genes for Glioblastoma.

Journal: International journal of general medicine

Status: data only, 1 dataset cited

[2557] doi:10.3389/fcell.2026.1862147 [paper, data]

MBNL1-dependent alternative splicing promotes neuronal differentiation through regulation of NUMA1 exon 16 during fibroblast-to-neuron reprogramming.

Journal: Frontiers in cell and developmental biology

Status: data only, 1 dataset cited

[2558] doi:10.3389/frai.2026.1849051 [paper, data]

Query-guided learning for efficient and interpretable multi-class brain tumor classification in MRI.

Journal: Frontiers in artificial intelligence

Status: data only, 2 datasets cited

[2559] Code ↔ Paper doi:10.64898/2026.06.18.26355960 [paper, repository]

Symptom-based phenotype discovery in motor neuron disease using natural language processing of electronic health records

Journal: medRxiv (preprint)

Authors' code: yabdulle/mnd-symptom-phenotyping (no license)

Status: dead link

[2560] Code ↔ Paper doi:10.7554/elife.106032 [paper, repository]

Neural signatures of model-based and model-free reinforcement learning across prefrontal cortex and striatum.

Journal: eLife

Authors' code: jamesbutler01/TwoStepExperiment (MIT)

Status: code verified, 12 files readable, 7 matches

[2561] Code ↔ Paper doi:10.7554/elife.107670 [paper, repository]

Paraventricular thalamus hyperactivity mediates stress-induced sensitization of unlearned fear but not stress-enhanced fear learning (SEFL).

Journal: eLife

Authors' code: kjnish/fiberphotometry (MIT)

Status: code verified, 2 files readable

Sunday, 21 June 2026 (7 papers)

[2562] Code ↔ Paper doi:10.1002/ece3.73881 [paper, repository]

Epigenetic Aging in Brain Tissue of the Self-Fertilizing Vertebrate, <i>Kryptolebias marmoratus</i>.

Journal: Ecology and evolution

Authors' code: jubelik/Epigenetic-clock (no license), Zenodo 20491333 (CC-BY-4.0)

Status: code verified, 5 files readable, 7 matches

[2563] Code ↔ Paper doi:10.1002/mrm.70481 [paper, repository]

SimulScan and Partial Least Squares: Visualizing Swallowing Through Functional and Dynamic Imaging Correlations.

Journal: Magnetic resonance in medicine

Authors' code: mrfil/PLSCDemo (no license)

Status: code verified, 11 files readable, 1 match

[2564] Code ↔ Paper doi:10.1007/s44192-026-00521-5 [paper, repository]

Associations between anterior hypothalamic subunits and ADHD and autistic traits revealed by deep learning MRI segmentation.

Journal: Discover mental health

Authors' code: BBillot/hypothalamus_seg (Apache-2.0)

Status: code verified, 39 files readable

[2565] Code ↔ Paper doi:10.1038/s41398-026-04200-5 [paper, repository]

Postmortem brain single-nucleus and bulk gene expression analyses identify shared and distinct abnormalities in bipolar disorder and major depressive disorder.

Journal: Translational psychiatry

Authors' code: PsychiatKobeUniv-singlecell/Code_brain_mood_disorders (no license)

Status: code verified, 22 files readable, 7 matches

[2566] Code ↔ Paper doi:10.1038/s41467-026-74462-6 [paper, repository]

Neural similarity between choice options predicts group-level context effects.

Journal: Nature communications

Authors' code: asafmm/neuro_decoy_effect (CC-BY-4.0)

Status: code verified, 19 files readable, 18 matches

[2567] Code ↔ Paper doi:10.1038/s41598-026-56778-x [paper, repository]

Chiari malformation type 1 is associated with a smaller fourth ventricle volume - a multi-cohort replication study.

Journal: Scientific reports

Authors' code: jarodroland/FourthVentricleVolumeCM1 (no license), SCAN-NRAD/DL-DiReCT (BSD-3-Clause)

Status: code verified, 15 files readable, 1 match

[2568] doi:10.1186/s40708-026-00313-1 [paper, data]

Evaluating multi-level membership inference risk in federated EEG learning.

Journal: Brain informatics

Status: data only, 2 datasets cited

Saturday, 20 June 2026 (17 papers)

[2569] doi:10.1002/ana.78283 [paper, data]

Gut-Brain Axis Modulation by Short-Chain Fatty Acids Exerts Disease-Modifying Effects in a Murine Model of Drug-Resistant Epilepsy.

Journal: Annals of neurology

Status: data only, 1 dataset cited

[2570] doi:10.1016/j.ajcnut.2026.101401 [paper]

Brain and physiological responses to flavored waters with different sweeteners: a randomized crossover study in healthy young adults.

Journal: The American journal of clinical nutrition

Status: code on request

[2571] Code ↔ Paper doi:10.1016/j.celrep.2026.117590 [paper, repository]

Impaired behavioral inhibition in Fmr1 KO mice is linked to disrupted visual cortex theta oscillations.

Journal: Cell reports

Authors' code: chubykin/V1-HPC-PFC-Behavior-Oscillations (no license), cortex-lab/allenCCF (no license)

Status: code verified, 91 files readable, 20 matches

[2572] doi:10.1016/j.isci.2026.116503 [paper]

Presynaptic SNAP25 supports maturation of hippocampal mossy fiber-CA3 synapses.

Journal: iScience

Status: code on request

[2573] Code ↔ Paper doi:10.1016/j.ynirp.2026.100374 [paper, repository]

Identification of abnormal neural language networks by reading "brainprints" in patients with brain tumors.

Journal: Neuroimage. Reports

Authors' code: neuroecologylab.org (no license)

Status: code verified

[2574] Code ↔ Paper doi:10.1038/s41467-026-73714-9 [paper, repository]

The genetic architecture of cortical similarity networks.

Journal: Nature communications

Authors' code: jrs95/geni.plots (GPL-3.0), Zenodo 7974716 (other-open), isebenius/mind (no license)

Status: code verified, 23 files readable, 5 matches

[2575] Code ↔ Paper doi:10.1038/s41467-026-74598-5 [paper, repository]

A synaptoid connectome differentiates tanycytic subpopulations and underlies neuroglial communication and neuroendocrine regulation.

Journal: Nature communications

Authors' code: umitozorhan/Tanybase (AGPL-3.0), Zenodo 19912027 (apgl-v3)

Status: code verified, 22 files readable, 4 matches

[2576] doi:10.1038/s41467-026-74712-7 [paper, data]

Trigger-day hCG effects on DNA methylation and neurodevelopment in ART offspring.

Journal: Nature communications

Status: data only, 2 datasets cited

[2577] doi:10.1038/s41598-026-54533-w [paper, data]

Hyperlipidemia induces hippocampal inflammation and loss of vascularity and can be rescued by silencing RIPK1.

Journal: Scientific reports

Status: data only, 1 dataset cited

[2578] Code ↔ Paper doi:10.1038/s41598-026-57519-w [paper, repository]

Automated segmentation of neurons and spinal cord structures in immunofluorescence images using SpineDL.

Journal: Scientific reports

Authors' code: biapy.readthedocs.io (no license), biapyx/biapy (MIT)

Status: code verified, 153 files readable, 6 matches

[2579] Code ↔ Paper doi:10.1038/s41598-026-58866-4 [paper, repository]

A neurocognitive interactive activation model of semantic priming in lexical decisions.

Journal: Scientific reports

Authors' code: OSF mwsed (no license)

Status: code verified, 484 files readable

[2580] doi:10.1038/s41598-026-59183-6 [paper, data]

Neuron-specific expression of transmembrane protein 130 (TMEM130).

Journal: Scientific reports

Status: data only, 1 dataset cited

[2581] Code ↔ Paper doi:10.1038/s44271-026-00485-w [paper, repository]

Auditory perceptual maps in humans and mice share common structures and predict perceptual decisions in discrimination learning.

Journal: Communications psychology

Authors' code: doi:10.12751/g-node.bgb999 (no license), g-node.org (no license)

Status: code verified

[2582] doi:10.1038/s44319-026-00837-x [paper, data]

Psc and Su(z)2 safeguard intestinal stem cell identity and prevent chinmo-dependent tumorigenesis.

Journal: EMBO reports

Status: data only, 1 dataset cited

[2583] doi:10.1186/s12929-026-01271-w [paper, data]

Lack of cortistatin drives neuroimmune and vascular dysfunction in brain ischemia.

Journal: Journal of biomedical science

Status: data only, 11 datasets cited

[2584] Code ↔ Paper doi:10.21769/bioprotoc.5591 [paper, repository]

Using Combined Fluorescent In Situ Hybridization With Immunohistochemistry to Co-localize mRNA in Diverse Neuronal Cell Types.

Journal: Bio-protocol

Authors' code: mkb142-art/Image-J-Macro-code-for-analyzing-mRNA-and-IHC-co-localization (no license)

Status: empty repository

[2585] Code ↔ Paper doi:10.7759/cureus.111193 [paper, repository]

Benchmarking a Local Schema-Constrained Large Language Model Pipeline for Abstract Screening and Evidence Mapping.

Journal: Cureus

Authors' code: svonte/Scoping-Systematic (MIT)

Status: code verified, 12 files readable, 2 matches

Friday, 19 June 2026 (35 papers)

[2586] doi:10.1016/j.nicl.2026.104025 [paper, data]

Functional brain biomarkers of self-referential bias in remitted depressed outpatients: a randomized controlled trial.

Journal: NeuroImage. Clinical

Status: data only, 1 dataset cited

[2587] Code ↔ Paper doi:10.1016/j.xgen.2026.101278 [paper, repository]

Single-cell profiling of DNA methylation in autism spectrum disorder prefrontal cortex reveals distinct regulatory and aging signatures.

Journal: Cell genomics

Authors' code: chooliu/snmCTseq_Pipeline (no license)

Status: code verified, 31 files readable, 6 matches

[2588] Code ↔ Paper doi:10.1021/acs.jmedchem.6c00231 [paper, repository]

Applying Deep-Learning-Driven <i>De Novo</i> Design to Hit Identification: A Case Study on A<sub>2A</sub> Adenosine Receptor Antagonists.

Journal: Journal of medicinal chemistry

Authors' code: MolecularAI/Reinvent (Apache-2.0)

Status: code verified, 277 files readable, 1 match

[2589] doi:10.1038/s41398-026-04168-2 [paper]

Multimodal predictors of spoken vocabulary development in autism: the role of early childhood brain and behavior.

Journal: Translational psychiatry

Status: code on request

[2590] Code ↔ Paper doi:10.1038/s41467-026-73883-7 [paper, repository]

In situ graphene-seq: spatial transcriptomics and chronic electrophysiological characterization of tissue microenvironments.

Journal: Nature communications

Authors' code: LiuLab-Bioelectronics-Harvard/Graphene_seq (Apache-2.0), Zenodo 19520229 (Apache-2.0)

Status: code verified, 13 files readable, 11 matches

[2591] doi:10.1038/s41467-026-74253-z [paper, data]

Disruption of the brain-spleen axis impairs monocyte-microglia communication and accelerates disease progression in a mouse model of amyloidosis.

Journal: Nature communications

Status: data only, 2 datasets cited

[2592] Code ↔ Paper doi:10.1038/s41467-026-74576-x [paper, repository]

Behavioral correlates of Purkinje cell ensemble covariance.

Journal: Nature communications

Authors' code: AbedNashef/Synchrony_paper (no license)

Status: code verified, 43 files readable, 1 match

[2593] Code ↔ Paper doi:10.1038/s41531-026-01439-z [paper, repository]

DBSsync: combining intracranial and multimodal data to investigate new biomarkers in Parkinson's disease.

Journal: NPJ Parkinson's disease

Authors' code: juliettevivien/DBSsync (MIT), neuromodulation/perceive (Apache-2.0)

Status: code verified, 112 files readable, 15 matches

[2594] doi:10.1038/s41598-026-57532-z [paper, data]

Predictability of sleep slow oscillation emergence and spatial extent from pre-onset neural dynamics.

Journal: Scientific reports

Status: code on request, 1 dataset cited

[2595] Code ↔ Paper doi:10.1038/s41598-026-58046-4 [paper, repository]

Dissecting the interplay of model-based control, impulsivity and compulsivity on self-control in daily life.

Journal: Scientific reports

Authors' code: OSF vjnhw (no license)

Status: code verified, 1 file readable, 1 match

[2596] Code ↔ Paper doi:10.1038/s41598-026-58377-2 [paper, repository]

A novel distortion-matched anatomical imaging sequence for high-fidelity functional mapping in submillimeter-resolution fMRI.

Journal: Scientific reports

Authors' code: SeongDaeYun/NovelMP2EPI (no license)

Status: code verified, 4 files readable

[2597] Code ↔ Paper doi:10.1038/s44400-026-00094-8 [paper, repository]

Haplotype-resolved DNA methylation at the <i>APOE</i> locus identifies allele-specific epigenetic signatures relevant to Alzheimer's disease risk.

Journal: NPJ dementia

Authors' code: NIH-CARD/CARDlongread_data_standardization (no license), nih-card/scmaverics (other), NIH-CARD/APOE_CpG_methylation (no license)

Status: code verified, 95 files readable, 4 matches

[2598] doi:10.1038/s44400-026-00101-y [paper, data]

Functional network contributions to longitudinal tau spread in Posterior Cortical Atrophy.

Journal: NPJ dementia

Status: data only, 1 dataset cited

[2599] doi:10.1080/17501911.2026.2691031 [paper, data]

Promoter methylation-associated brain-enriched long noncoding RNAs in glioblastoma: a multi-cohort public epigenomic re-analysis.

Journal: Epigenomics

Status: data only, 1 dataset cited

[2600] doi:10.1080/21505594.2026.2690777 [paper, data]

mmu_circ_0012122/mmu-miR-1843-5p/Sertad2 axis: A novel regulatory pathway in rabies virus infection.

Journal: Virulence

Status: data only, 3 datasets cited

[2601] Code ↔ Paper doi:10.1093/braincomms/fcag227 [paper, repository]

Thalamocortical seizure onset patterns in drug-resistant focal epilepsy.

Journal: Brain communications

Authors' code: hdsimpson/tsr-analysis-2026 (no license)

Status: code verified, 7 files readable, 1 match

[2602] Code ↔ Paper doi:10.1093/pnasnexus/pgag224 [paper, repository]

Preserving predictive information under biologically plausible compression.

Journal: PNAS nexus

Authors' code: sepalmer/predictive-coarse-graining (no license)

Status: code verified, 3 files readable, 2 matches

[2603] Code ↔ Paper doi:10.1107/s1600577526005503 [paper, repository]

Evolution of hierarchical phase-contrast tomography on the European Synchrotron beamlines BM05 and BM18: a whole adult human brain imaging case study.

Journal: Journal of synchrotron radiation

Authors' code: gitlab.esrf.fr/night_rail/applications/mirone/night_rail_bm18 (no license)

Status: code verified, 108 files readable

[2604] doi:10.1126/sciadv.ady3144 [paper, data]

Merging neural stimulation and exoskeletons to enhance sensorimotor hand functions after brain or spinal cord injury.

Journal: Science advances

Status: data only, 1 dataset cited

[2605] doi:10.1126/sciadv.adz0887 [paper, data]

Neuronal YTHDF2 suppresses innate immune activation in Aβ pathology by promoting m<sup>6</sup>A-dependent decay of cytosolic mitochondrial mRNAs.

Journal: Science advances

Status: data only, 1 dataset cited

[2606] Code ↔ Paper doi:10.1126/sciadv.aec7705 [paper, repository]

Mitotic Cdc42 waves encode PI(3,4)P<sub>2</sub> signaling and Golgi morphological state to control spindle scaling.

Journal: Science advances

Authors' code: min-wu-lab (no license), min-wu-lab/2023-Tong-et-al (MIT), min-wu-lab/2026-Fung-et-al (no license), doi:10.5061/dryad.cfxpnvxn7 (no license)

Status: code verified, 14 files readable, 6 matches

[2607] Code ↔ Paper doi:10.1126/sciadv.aed9309 [paper, repository]

Dynamic population coding of kinematic structure across executed and observed actions in primate premotor cortex.

Journal: Science advances

Authors' code: Zenodo 18983284 (CC-BY-4.0)

Status: code verified, 9 files readable, 3 matches

[2608] doi:10.1186/s12874-026-02911-3 [paper, data]

Widening participation in cognitive neuroscience: a mixed-methods study of age-related motivators, barriers and attitudes towards imaging methods.

Journal: BMC medical research methodology

Status: data only, 1 dataset cited

[2609] doi:10.1186/s12883-026-05065-3 [paper, data]

Artificial intelligence (AI)-powered diagnostic support for stroke via Telegram bot: preliminary findings.

Journal: BMC neurology

Status: data only, 2 datasets cited

[2610] doi:10.1186/s12987-026-00825-2 [paper, data]

Acute amyloid-β exposure disrupts insulin signaling in hCMEC/D3 blood-brain barrier endothelial cells.

Journal: Fluids and barriers of the CNS

Status: data only, 4 datasets cited

[2611] doi:10.1242/dev.205386 [paper, data]

Loss of the endoplasmic reticulum protein canopy 1 disrupts the function and circuit organization of V2R-expressing vomeronasal sensory neurons.

Journal: Development (Cambridge, England)

Status: data only, 1 dataset cited

[2612] Code ↔ Paper doi:10.21203/rs.3.rs-9927928/v1 [paper, repository]

Genome-wide and allele-resolved maps of the radial architecture of the mouse genome

Journal: Research Square (preprint)

Authors' code: BiCroLab/nextflow-gpseq (MIT), nf-core/rnaseq (MIT), nf-core/atacseq (MIT), elgw/chromflock (no license), BiCroLab/AllelicRadiality (no license)

Status: code verified, 248 files readable, 23 matches

[2613] doi:10.2147/nss.s602062 [paper]

Night-to-Night Sleep Variability Modulates Subjective Sleep Perception in Chronic Insomnia: A Multilevel Analysis.

Journal: Nature and science of sleep

Status: code on request

[2614] doi:10.3389/fgene.2026.1833119 [paper]

Integrative analysis identifies Hspa5 as a key regulator of the ERS/UPR-immune axis in spinal cord injury.

Journal: Frontiers in genetics

Status: data only

[2615] doi:10.3389/fimmu.2026.1867920 [paper, data]

A self-perpetuating neuron-intrinsic GSDMD-mtDNA-AIM2 inflammasome axis drives neuronal pyroptosis and cognitive impairment after traumatic brain injury.

Journal: Frontiers in immunology

Status: data only, 1 dataset cited

[2616] doi:10.3389/fnagi.2026.1787252 [paper, data]

Age-associated neuronal micronuclei formation and transfer to microglia.

Journal: Frontiers in aging neuroscience

Status: data only, 1 dataset cited

[2617] Code ↔ Paper doi:10.3389/fpsyt.2026.1737357 [paper, repository]

A computational pipeline for a neurotransmitter-centric analysis of the effects of psychiatric medication on EEG spectral power.

Journal: Frontiers in psychiatry

Authors' code: rwth-imi/Drug_induced_spectral_changes_TUH (BSD-2-Clause)

Status: code verified, 35 files readable, 5 matches

[2618] doi:10.3389/fpsyt.2026.1848053 [paper, data]

Neuroanatomical substrates of perivascular space index: a morphometric and tractography study.

Journal: Frontiers in psychiatry

Status: data only, 1 dataset cited

[2619] Code ↔ Paper doi:10.7554/elife.106347 [paper, repository]

Esr1-dependent signaling and transcriptional maturation in the medial preoptic area of the hypothalamus shape the development of mating behavior during adolescence.

Journal: eLife

Authors' code: theislab/paga (BSD-3-Clause), stuberlab/Hashikawa-Hashikawa-eLife (MIT)

Status: code verified, 36 files readable, 9 matches

[2620] Code ↔ Paper doi:10.7554/elife.108684 [paper, repository]

Multi-timescale neural adaptation underlying long-term musculoskeletal reorganization.

Journal: eLife

Authors' code: animalmodel/Philipp_eLife_2025 (MIT), Zenodo 18030926 (CC-BY-4.0)

Status: code verified, 22 files readable, 8 matches

Thursday, 18 June 2026 (35 papers)

[2621] doi:10.1002/advs.202524193 [paper, data]

Multimodal Imaging Reveals Rapid Catecholamine Uptake and Release by Neutrophils.

Journal: Advanced science (Weinheim, Baden-Wurttemberg, Germany)

Status: data only, 1 dataset cited

[2622] Code ↔ Paper doi:10.1002/jcv2.70142 [paper, repository]

Common cause versus dynamic mutualism: Insights into ADHD's common comorbidities.

Journal: JCPP advances

Authors' code: OSF vf2as (no license), OSF n7uka (no license)

Status: code verified

[2623] Code ↔ Paper doi:10.1016/j.dcn.2026.101765 [paper, repository]

Fusiform face area development correlates with development in higher-order social brain regions.

Journal: Developmental cognitive neuroscience

Authors' code: hrichardsonlab/fmri-analysis (no license), LorenaJS/FRIC (no license)

Status: code verified, 50 files readable, 10 matches

[2624] doi:10.1016/j.dcn.2026.101767 [paper, data]

Neural correlates of learning speed reveal developmental differences in memory.

Journal: Developmental cognitive neuroscience

Status: data only, 1 dataset cited

[2625] doi:10.1016/j.isci.2026.116389 [paper, data]

Whole brain fluorescence imaging in <i>Drosophila</i> reveals spreading depolarization and its initiation, propagation, and resilience dynamics.

Journal: iScience

Status: data only, 2 datasets cited

[2626] Code ↔ Paper doi:10.1016/j.isci.2026.116427 [paper, repository]

Frontal brain injury alters human risky choices in self and other contexts.

Journal: iScience

Authors' code: OSF cx73n (no license)

Status: code verified, 4 files readable, 2 matches

[2627] Code ↔ Paper doi:10.1016/j.isci.2026.116469 [paper, repository]

Neuronal differentiation of neuroblastoma cell lines for neurological disease modeling.

Journal: iScience

Authors' code: Zenodo 6401600 (MIT), Zenodo 13759327 (CC-BY-4.0), claupomm/rna-seq_snv_tumour_only (no license)

Status: code verified, 23 files readable, 4 matches

[2628] Code ↔ Paper doi:10.1016/j.molmet.2026.102403 [paper, repository]

The central amygdala gates exogenous glucagon-like peptide 1 signals.

Journal: Molecular metabolism

Authors' code: OpenBehavior/Modular-Stereotaxic-Holders (GPL-3.0), Hardaway-Lab/FED3-Photometry_Workflows (no license)

Status: code verified, 16 files readable, 1 match

[2629] Code ↔ Paper doi:10.1016/j.stemcr.2026.102967 [paper, repository]

Single-cell multiomic approaches define a gradual, spatially regulated epigenetic and transcriptional transition from embryonic to adult neural stem cells.

Journal: Stem cell reports

Authors' code: immunogenomics/harmony (no license)

Status: code verified, 32 files readable, 2 matches

[2630] Code ↔ Paper doi:10.1016/j.xcrm.2026.102793 [paper, repository]

A predictive corticospinal model for pain perception.

Journal: Cell reports. Medicine

Authors' code: buer19970329/corticospinal-pain-intensity-pattern (MIT), hmmlearn/hmmlearn (BSD-3-Clause)

Status: code verified, 40 files readable, 9 matches

[2631] Code ↔ Paper doi:10.1016/j.xgen.2026.101280 [paper, repository]

BMI-genome interactions regulate global gene expression with emphasis in brain and gut.

Journal: Cell genomics

Authors' code: rsigner/BMI_dynamic_models (MIT), Zenodo 20215573 (no license), predictdb.org/post/2021 (no license), hakyimlab/metaxcan (MIT), chandlerzuo/atSNP (no license)

Status: code verified, 161 files readable, 3 matches

[2632] Code ↔ Paper doi:10.1017/s0033291726104838 [paper, repository]

Variations of structural-functional coupling in post-traumatic stress disorder are associated with underlying molecular and transcriptional features.

Journal: Psychological medicine

Authors' code: rmarkello/abagen (BSD-3-Clause)

Status: code verified, 55 files readable, 1 match

[2633] Code ↔ Paper doi:10.1038/s41380-026-03686-1 [paper, repository]

Early oligodendrocyte dysfunction signature in Alzheimer's disease: Insights from DNA methylomics and transcriptomics.

Journal: Molecular psychiatry

Authors' code: CBettencourtLab/AD_OLGDNAm (no license)

Status: code verified, 6 files readable, 6 matches

[2634] Code ↔ Paper doi:10.1038/s41467-026-74434-w [paper, repository]

The alx gene family confers segmental identity to frontonasal cranial neural crest cells.

Journal: Nature communications

Authors' code: AbiRMM/alx3-alx4-scRNA-seq-Analysis (no license)

Status: code verified, 2 files readable, 3 matches

[2635] Code ↔ Paper doi:10.1038/s41467-026-74572-1 [paper, repository]

The hippocampus becomes topographically and functionally specialized along the longitudinal axis with development.

Journal: Nature communications

Authors' code: JonahKember/precision_mapping (no license), Zenodo 20086215 (CC-BY-4.0), codeocean:7323987 (no license), jonahkember/posterior_hippocampus_development (no license)

Status: code verified, 19 files readable, 13 matches

[2636] doi:10.1038/s41598-026-53148-5 [paper, data]

Neurovascular and inflammatory effects of biperiden in the acute phase of moderate traumatic brain injury: evidence from a non-human primate model.

Journal: Scientific reports

Status: data only, 1 dataset cited

[2637] Code ↔ Paper doi:10.1038/s41598-026-55903-0 [paper, repository]

Towards trustworthy brain stroke diagnosis using a lightweight explainable deep learning framework for CT imaging.

Journal: Scientific reports

Authors' code: romzanalom/Explainable_AI_Deep_Neural_Brain_Stroke_Detection_DNBSD (no license)

Status: dead link

[2638] Code ↔ Paper doi:10.1038/s41598-026-57256-0 [paper, repository]

Pupil- and gaze dynamics track emotion content in naturalistic speech.

Journal: Scientific reports

Authors' code: anne-urai/pupil_preprocessing_tutorial (no license)

Status: code verified, 5 files readable, 1 match

[2639] doi:10.1073/pnas.2426990123 [paper, data]

Endothelial KLF4 depletion drives age-related neurovascular dysfunction and neuropsychiatric impairment.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 1 dataset cited

[2640] doi:10.1080/07853890.2026.2662776 [paper, data]

Unveiling the cognitive fog in lung cancer patients: non-invasive exploration of blood-brain barrier disruption and brain structural changes.

Journal: Annals of medicine

Status: data only, 1 dataset cited

[2641] Code ↔ Paper doi:10.1093/braincomms/fcag187 [paper, repository]

50 Hz Cortical stimulation increases interictal epileptiform discharges at the seizure onset zone.

Journal: Brain communications

Authors' code: Ahdyie-Ahmadi/Stimulation-Paper (no license)

Status: code verified, 6 files readable, 1 match

[2642] Code ↔ Paper doi:10.1093/braincomms/fcag232 [paper, repository]

Dynamic multivariate patterns of brain structure-neuropsychiatric symptom associations in long COVID.

Journal: Brain communications

Authors' code: anaston/cca_pls_toolkit (GPL-3.0)

Status: code verified, 104 files readable

[2643] doi:10.1136/bmjopen-2025-110906 [paper]

Strategic Amyotrophic Lateral Sclerosis Australia-Systems Genomics Consortium (SALSA-SGC): cohort profile.

Journal: BMJ open

Status: code on request

[2644] doi:10.1161/strokeaha.126.055551 [paper, data]

Ratio of Left Atrial and Ventricular Volume as New Marker of Atrial Cardiopathy and Stroke Risk.

Journal: Stroke

Status: data only, 2 datasets cited

[2645] Code ↔ Paper doi:10.1162/imag.a.1266 [paper, repository]

Multimodal subspace independent vector analysis effectively captures latent relationships between brain structure and function.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: trendscenter/MSIVA (Apache-2.0)

Status: code verified, 146 files readable, 21 matches

[2646] Code ↔ Paper doi:10.1162/imag.a.1278 [paper, repository]

Young and old adult brains experience opposite effects of acute sleep restriction on the functional connectivity network.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: McIntosh-Lab/SleepyBrain_analyses (no license)

Status: code verified, 79 files readable, 8 matches

[2647] doi:10.1186/s13020-026-01443-8 [paper, data]

Critical role of high-dose Astragalus in Buyang Huanwu Decoction for enhancing neurovascular coupling in a Qi Deficiency and Blood Stasis animal model.

Journal: Chinese medicine

Status: data only, 1 dataset cited

[2648] Code ↔ Paper doi:10.1186/s40478-026-02341-8 [paper, repository]

Intrathecal (G<sub>4</sub>C<sub>2</sub>)<sub>149</sub> delivery in C9orf72-deficient mice yields mild motor dysfunction and ALS/FTD pathological hallmarks.

Journal: Acta neuropathologica communications

Authors' code: figshare 32825642 (CC-BY-4.0)

Status: code verified, 1 file readable, 2 matches

[2649] Code ↔ Paper doi:10.1364/boe.603469 [paper, repository]

FLIM quantification of temperature-dependent enzyme-NADH binding dynamics.

Journal: Biomedical optics express

Authors' code: walshlab/Infrared-Temperature-FLIM (no license)

Status: code verified, 3 files readable, 4 matches

[2650] doi:10.1371/journal.pbio.3003861 [paper, data]

Learning engages transient and sustained cellular mechanisms in the human brain.

Journal: PLoS biology

Status: data only, 1 dataset cited

[2651] doi:10.1371/journal.ppat.1014314 [paper, data]

Chemo-omic pipeline enables discovery of prion synaptotoxic pathways and inhibitory drugs.

Journal: PLoS pathogens

Status: data only, 1 dataset cited

[2652] Code ↔ Paper doi:10.21203/rs.3.rs-9839901/v1 [paper, repository]

Early life ventricular enlargement precedes emergence of autistic traits

Journal: Research Square (preprint)

Authors' code: SVRTK/SVRTK (Apache-2.0)

Status: code verified, 69 files readable

[2653] doi:10.3389/fnagi.2026.1885392 [paper, data]

State sensitivity and five-year longitudinal stability of resting-state EEG biomarker candidates in healthy adults.

Journal: Frontiers in aging neuroscience

Status: data only, 1 dataset cited

[2654] Code ↔ Paper doi:10.3390/ijms27125533 [paper, repository]

Discovery-Driven Plasma Proteomics Identifies a Multi-Protein Signature for Amyloid PET Positivity: A Machine Learning Analysis of the Bio-Hermes Cohort.

Journal: International journal of molecular sciences

Authors' code: stelioslamprou37/SML_PipelineR (MIT)

Status: code verified, 3 files readable, 1 match

[2655] Code ↔ Paper doi:10.7554/elife.102200 [paper, repository]

Developmental oligodendrocytes regulate brain function through the mediation of synchronized spontaneous activity.

Journal: eLife

Authors' code: doi:10.5061/dryad.b5mkkwhvj (no license)

Status: code verified

Wednesday, 17 June 2026 (38 papers, 33 on this page)

[2656] doi:10.1002/adhm.71364 [paper, data]

Microsphere-Templated Conductive Syntactic Foams for Recyclable and Additively Manufactured Soft Electronics.

Journal: Advanced healthcare materials

Status: data only, 1 dataset cited

[2657] doi:10.1016/j.isci.2026.116402 [paper]

Clocks slide rather than freeze during torpor in the mouse.

Journal: iScience

Status: code on request

[2658] Code ↔ Paper doi:10.1016/j.isci.2026.116429 [paper, repository]

<i>HMGA2</i> regulates fear and growth: Canine GWAS and functional evidence.

Journal: iScience

Authors' code: genetics-statistics/GEMMA (GPL-3.0), deweylab/RSEM (GPL-3.0), OpenGene/fastp (MIT)

Status: code verified, 505 files readable, 2 matches

[2659] doi:10.1016/j.jgeb.2026.100724 [paper, data]

Investigating the prognostics and theranostic cell cycle-related genes of Hinokinin in high-grade glioma: an integrated network pharmacology, bioinformatics, and molecular docking approach.

Journal: Journal, genetic engineering & biotechnology

Status: data only, 2 datasets cited

[2660] Code ↔ Paper doi:10.1016/j.mcpro.2026.101604 [paper, repository]

Optimizing NGN2 Dosage Enhances the Neuronal Enrichment of iPSC-Derived Neuronal Cultures.

Journal: Molecular & cellular proteomics : MCP

Authors' code: xomicsdatascience/generation_of_iNeurons (no license)

Status: code verified, 11 files readable, 7 matches

[2661] Code ↔ Paper doi:10.1016/j.patter.2026.101590 [paper, repository]

Density-based longitudinal neuron tracking in high-density electrophysiological recordings.

Journal: Patterns (New York, N.Y.)

Authors' code: cortex-lab/phy (BSD-3-Clause), jiumao2/PhyWaveformPlugin (GPL-3.0), jiumao2/AutoCurationKilosort (GPL-3.0), jiumao2/DANT_UI (GPL-3.0), EnnyvanBeest/UnitMatch (CC-BY-NC-SA-4.0), Zenodo 19973060 (GPL-2.0), Zenodo 20021262 (GPL-3.0), Zenodo 19973259 (GPL-3.0), Zenodo 19972266 (GPL-3.0), Zenodo 19972858 (GPL-3.0), Zenodo 19973154 (GPL-3.0)

Status: code verified, 1,036 files readable, 18 matches

[2662] Code ↔ Paper doi:10.1016/j.tjpad.2026.100622 [paper, repository]

The time interval from amyloid to tau PET positivity varies by age, sex and APOE-ε4 status.

Journal: The journal of prevention of Alzheimer's disease

Authors' code: cind/Amyloid-tau-interval-paper-Mil--Alom- (no license), cind/Amyloid-tau-interval-paper-Mil-Alom (no license)

Status: code verified, 3 files readable, 2 matches

[2663] doi:10.1038/s41380-026-03667-4 [paper, data]

Engineering functional ventral midbrain dopaminergic neurons in human organoids through WNT modulation and bioreactor culture.

Journal: Molecular psychiatry

Status: data only, 2 datasets cited

[2664] Code ↔ Paper doi:10.1038/s41398-026-04141-z [paper, repository]

Effects on hippocampal activity following novel 5-HT4 receptor agonism in unmedicated patients with depression: the RESTAND study.

Journal: Translational psychiatry

Authors' code: OSF v7kgs (no license)

Status: code verified, 16 files readable, 6 matches

[2665] Code ↔ Paper doi:10.1038/s41467-026-73366-9 [paper, repository]

Cortical and white matter myelination proceed in concert during early infancy.

Journal: Nature communications

Authors' code: EduNeuroLab/WMGMMyelinInfants (no license)

Status: code verified, 10 files readable, 11 matches

[2666] Code ↔ Paper doi:10.1038/s41467-026-73826-2 [paper, repository]

Non-invasive in vivo acoustoelectric neuromodulation and its contribution to ultrasound stimulation.

Journal: Nature communications

Authors' code: doi:10.6084/m9.figshare.c.7909283 (no license), Acoustoelectric/Acoustoelectric_neuromodulation_and_its_contribution_to_US_stimulation (Apache-2.0)

Status: code verified, 31 files readable, 1 match

[2667] doi:10.1038/s41586-026-10648-8 [paper, data]

Confined migration induces non-lethal DNA damage in developing neurons.

Journal: Nature

Status: data only, 2 datasets cited

[2668] Code ↔ Paper doi:10.1038/s41586-026-10653-x [paper, repository]

A mosaic of whole-body representations on the human precentral gyrus.

Journal: Nature

Authors' code: fwillett/cvVectorStats (MIT), d-r-deo/pcg-mosaic (MIT), cffan/neural_seq_decoder (no license)

Status: code verified, 128 files readable, 25 matches

[2669] Code ↔ Paper doi:10.1038/s41586-026-10679-1 [paper, repository]

Cortical development dynamics across autism spectrum disorder mouse models.

Journal: Nature

Authors' code: modeldb:184162 (no license), git.ista.ac.at/research-sofware/mouseome (no license), Zenodo 17532669 (BSD-3-Clause), sommerc/tadpose (BSD-3-Clause)

Status: code verified, 28 files readable, 4 matches

[2670] Code ↔ Paper doi:10.1038/s41586-026-10691-5 [paper, repository]

Mapping the neuronal building blocks of human language with language models.

Journal: Nature

Authors' code: Zenodo 20128462 (CC-BY-4.0)

Status: code verified, 23 files readable, 16 matches

[2671] doi:10.1038/s41598-026-56169-2 [paper, data]

An optimization-driven hierarchical deep learning approach using the Gray Langurs algorithm for data-driven seismic activity prediction.

Journal: Scientific reports

Status: data only, 1 dataset cited

[2672] Code ↔ Paper doi:10.1080/07853890.2026.2685416 [paper, repository]

Pulmonary and cerebral damage in COVID-19 survivors: is there any association?

Journal: Annals of medicine

Authors' code: JoHof/lungmask (Apache-2.0), antonioguj/bronchinet (MIT), FAIR-Unipd/dsc-mri-toolbox (MIT)

Status: code verified, 140 files readable, 2 matches

[2673] Code ↔ Paper doi:10.1093/braincomms/fcag193 [paper, repository]

Acute and longitudinal magnetic resonance imaging abnormalities in antibody-mediated encephalitis.

Journal: Brain communications

Authors' code: nabilseery/Antibody-mediated-encephalitis-MRI-analysis-code (no license)

Status: code verified, 2 files readable

[2674] doi:10.1126/sciadv.adt2527 [paper, data]

NPAS3-regulated astrocyte mitochondrial bioenergetics is required for cognition.

Journal: Science advances

Status: data only, 1 dataset cited

[2675] Code ↔ Paper doi:10.1162/imag.a.1254 [paper, repository]

The individuality of single-frame functional brain connectivity.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: ccmcinty/The-individuality-of-single-frame-functional-brain-connectivity- (no license)

Status: code verified, 33 files readable, 1 match

[2676] Code ↔ Paper doi:10.1162/imag.a.1276 [paper, repository]

High-resolution whole-brain magnetic resonance spectroscopic imaging in youth at risk for psychosis.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: MRSI-Psychosis-UP/MRSI-Metabolic-Connectome (other)

Status: code verified, 56 files readable, 8 matches

[2677] Code ↔ Paper doi:10.1162/opmi.a.358 [paper, repository]

Tracking Visual Statistical Learning with Steady-State Visual Evoked Potentials: Effects of Exemplar and Category Information.

Journal: Open mind : discoveries in cognitive science

Authors' code: OSF mhr6y (no license)

Status: code verified, 8 files readable, 3 matches

[2678] doi:10.1186/s12883-026-05085-z [paper, data]

The use of routinely collected structural neuroimaging to identify cognitive impairment in multiple sclerosis.

Journal: BMC neurology

Status: data only, 1 dataset cited

[2679] doi:10.1186/s12888-026-08304-6 [paper, data]

Transcranial direct current stimulation improves reduced global BOLD-CSF coupling in patients with insomnia disorder and comorbid anxiety: a resting-state functional MRI study.

Journal: BMC psychiatry

Status: data only, 1 dataset cited

[2680] doi:10.1186/s40035-026-00559-z [paper, data]

Targeting lysosomal pH restores mitochondrial quality control in GBA1-mutant Parkinson's disease.

Journal: Translational neurodegeneration

Status: data only, 2 datasets cited

[2681] Code ↔ Paper doi:10.1364/boe.600665 [paper, repository]

NeuroSeg-MF: robust neuron segmentation in two-photon Ca<sup>2+</sup> imaging using multi-feature fusion and detection-guided SAM.

Journal: Biomedical optics express

Authors' code: XZH-James/NeuroSeg-MF (no license)

Status: code verified, 101 files readable, 11 matches

[2682] Code ↔ Paper doi:10.1371/journal.pcbi.1014422 [paper, repository]

Deciphering cell type-specific causal genetic effects on brain imaging-derived phenotypes and disorders with single-cell Mendelian randomization.

Journal: PLoS computational biology

Authors' code: sldrcyang/ExpMR (no license)

Status: code verified, 89 files readable, 9 matches

[2683] doi:10.3389/fmed.2026.1804084 [paper, data]

Lightweight deep learning framework for intracranial hemorrhage detection in brain CT scans.

Journal: Frontiers in medicine

Status: data only, 1 dataset cited

[2684] doi:10.3389/fncel.2026.1830831 [paper, data]

Brief mechanical pulses induce sustained intracellular L-lactate production in astrocytes.

Journal: Frontiers in cellular neuroscience

Status: data only, 2 datasets cited

[2685] doi:10.3389/fncir.2026.1821810 [paper, data]

Developmental trajectories of vocal behaviors in common marmosets as a reference framework for neurobehavioral studies.

Journal: Frontiers in neural circuits

Status: data only, 2 datasets cited

[2686] doi:10.3389/fncom.2026.1845003 [paper, data]

MsGCN: a multi-stream graph convolutional network for multiband PLV graph fusion in EEG-based biometric identification.

Journal: Frontiers in computational neuroscience

Status: data only, 1 dataset cited

[2687] Code ↔ Paper doi:10.3389/fphys.2026.1827824 [paper, repository]

Shao-Ma-Zhi-Jing granules alleviate Tourette Syndrome by modulating the cAMP/PI3K/AKT/NF-κB signaling pathway, T cell differentiation, microglia, and gut microbiota.

Journal: Frontiers in physiology

Authors' code: picrust/picrust2 (GPL-3.0)

Status: code verified, 38 files readable

[2688] doi:10.3390/brainsci16060644 [paper, data]

Personalized Music-Embedded Sound Therapy Based on Gating Modulation and Neural Decoupling Reduces Tinnitus Severity.

Journal: Brain sciences

Status: data only, 1 dataset cited

Also: by category, author, journal, institution, tool or dataset; the search; the DOI lookup for any paper read, with or without a page.