Every paper, by date: page 11

44,644 papers with a page: 24,189 with their authors' code, 4,955 with code on request, 15,495 with data only. The most recent first, 224 a page. Page 11 of 200: 1 July 2026 to 24 June 2026.

Wednesday, 1 July 2026 (144 papers, 36 on this page)

[2241] Code ↔ Paper doi:10.1117/1.nph.13.3.035006 [paper, repository]

Characterizing developmental changes in infant habituation using functional change point detection.

Journal: Neurophotonics

Authors' code: sam-beaton/fcpt (MIT)

Status: code verified, 38 files readable, 8 matches

[2242] Code ↔ Paper doi:10.1117/1.nph.13.3.035007 [paper, repository]

Analytical model enabling the correction of absorption and scattering in dual-color ratiometric multiphoton microscopy of brain tissue.

Journal: Neurophotonics

Authors' code: laboratory-charpak/Multiphoton-Ratiometric-Measurements-Model (MIT)

Status: code verified, 21 files readable

[2243] doi:10.1117/1.nph.13.3.035008 [paper]

Metabolism and oxygen tension in Alzheimer's disease mouse model using two-photon FLIM-PLIM microscopy.

Journal: Neurophotonics

Status: code on request

[2244] doi:10.1117/1.nph.13.3.035009 [paper]

Single-subject detection of speech network activation using functional near-infrared spectroscopy.

Journal: Neurophotonics

Status: code on request

[2245] doi:10.1117/1.nph.13.3.035010 [paper, data]

Toward comprehensive multimodal neuromonitoring of surrogates of cerebral autoregulation in traumatic brain injury: insights from a hyperventilation protocol.

Journal: Neurophotonics

Status: data only, 1 dataset cited

[2246] Code ↔ Paper doi:10.1126/sciadv.adu3822 [paper, repository]

Tethered agonist- and GAIN domain-independent signaling of an adhesion GPCR.

Journal: Science advances

Authors' code: purl.stanford.edu/bj843yr3863 (no license)

Status: code verified

[2247] Code ↔ Paper doi:10.1126/sciadv.adu9309 [paper, repository]

Variations of global brain asymmetry are associated with aging and related diseases.

Journal: Science advances

Authors' code: ThomasYeoLab/CBIG (MIT), Zenodo 15561190 (CC-BY-4.0)

Status: code verified, 2,000 files readable

[2248] Code ↔ Paper doi:10.1158/0008-5472.can-25-4018 [paper, repository]

MIF-Induced CD74+ Microglia and Macrophages Promote Progression of Brain Metastasis and Are Clinically Relevant across Central Nervous System Disorders.

Journal: Cancer research

Authors' code: osvaldogc/nextpresso1.9.2 (CC-BY-NC-ND-4.0)

Status: code verified, 15 files readable, 1 match

[2249] Code ↔ Paper doi:10.1162/imag.a.1289 [paper, repository]

Measurement prediction and power analysis for fNIRS and DOT.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: esbulger/fnirs-power (GPL-3.0)

Status: code verified, 76 files readable, 14 matches

[2250] Code ↔ Paper doi:10.1162/nol.a.264 [paper, repository]

The Temporal Dynamics of the Labeling Algorithm During Natural Language Comprehension: Neural Evidence for Phrase Grammatical Type Generation.

Journal: Neurobiology of language (Cambridge, Mass.)

Authors' code: OSF 9qvtx (no license)

Status: code verified, 1 file readable

[2251] Code ↔ Paper doi:10.1162/nol.a.265 [paper, repository]

Structural Brain Correlates of Poor Reading Comprehension.

Journal: Neurobiology of language (Cambridge, Mass.)

Authors' code: OSF 2ng57 (no license)

Status: code verified, 1 file readable, 2 matches

[2252] Code ↔ Paper doi:10.1162/nol.a.266 [paper, repository]

The Role of the Anterior Temporal Lobe in Reading: An HD-tDCS Study.

Journal: Neurobiology of language (Cambridge, Mass.)

Authors' code: OSF 2nmcr (no license)

Status: code verified, 2 files readable, 1 match

[2253] Code ↔ Paper doi:10.1162/nol.a.268 [paper, repository]

A Matter of Font: Visual Word Form Area Responses to Brand Names Are More Sensitive to Font Than to Letter Case Changes.

Journal: Neurobiology of language (Cambridge, Mass.)

Authors' code: OSF 9a2jv (no license)

Status: empty repository

[2254] doi:10.1167/iovs.67.8.32 [paper, data]

FLVCR2 Regulation of Intracellular Heme Modulates Vascular Tip/Stalk Specification During Retinal Angiogenesis.

Journal: Investigative ophthalmology & visual science

Status: data only, 1 dataset cited

[2255] doi:10.1167/iovs.67.8.37 [paper, data]

Aberrant Functional Lateralization and Interhemispheric Synergy in High Myopia: Insights From Neurotransmitter Distribution Signatures and Machine Learning Classification.

Journal: Investigative ophthalmology & visual science

Status: data only, 1 dataset cited

[2256] Code ↔ Paper doi:10.1167/iovs.67.8.61 [paper, repository]

A Shared Genetic Basis Underlying Myopia-Exotropia Comorbidity.

Journal: Investigative ophthalmology & visual science

Authors' code: chr1swallace/coloc (no license)

Status: code verified, 41 files readable, 4 matches

[2257] Code ↔ Paper doi:10.1167/iovs.67.8.9 [paper, repository]

Müller Glia-Exclusive CLRN1 Expression Drives Non-Cell-Autonomous Photoreceptor Degeneration in Usher Syndrome Type 3A.

Journal: Investigative ophthalmology & visual science

Authors' code: doyang-um/CLRN1_snRNAseq_10M (MIT)

Status: code verified, 16 files readable, 11 matches

[2258] doi:10.1177/00368504261472740 [paper]

DTLI: Distribution transformation-based lightweight learned indexing for data lakehouse query optimization.

Journal: Science progress

Status: code on request

[2259] doi:10.1186/s12883-026-05109-8 [paper, data]

A preliminary analysis of the inflammatory protein landscape in the CSF of mid- to late-stage Parkinson's disease: associations with motor severity and subtypes.

Journal: BMC neurology

Status: data only, 1 dataset cited

[2260] doi:10.1186/s13073-026-01699-7 [paper, data]

De novo variants in NPTN cause a neurodevelopmental disorder with autism and neuroplastin-PMCA hypofunction.

Journal: Genome medicine

Status: data only, 1 dataset cited

[2261] doi:10.1186/s40708-026-00317-x [paper, data]

Parkinson's disease classification using optimized attention-based deep learning from EEG signals with interpretable sub-band topography.

Journal: Brain informatics

Status: code on request, 2 datasets cited

[2262] doi:10.1210/endrev/bnag008 [paper, data]

Diverse SOX3 genetic variants and their associated phenotypic spectrum in human disease.

Journal: Endocrine reviews

Status: data only, 1 dataset cited

[2263] Code ↔ Paper doi:10.1523/eneuro.0023-26.2026 [paper, repository]

Real-Time Segmentation and Classification of Birdsong Syllables for Learning Experiments.

Journal: eNeuro

Authors' code: veitlab/moove (MIT), vocalpy/vak (BSD-3-Clause), python-poetry/poetry (MIT)

Status: code verified, 791 files readable, 21 matches

[2264] Code ↔ Paper doi:10.3389/fcell.2026.1880548 [paper, repository]

A pipeline for cell migration analysis in live-cell imaging data from human iPSC-derived forebrain assembloids.

Journal: Frontiers in cell and developmental biology

Authors' code: codyheadings/ACMT (MIT)

Status: code verified, 14 files readable, 5 matches

[2265] Code ↔ Paper doi:10.3389/fnagi.2026.1847611 [paper, repository]

APOE ε4-associated hippocampal atrophy trajectories across the Alzheimer's disease continuum: a systematic review, meta-analysis, and longitudinal validation.

Journal: Frontiers in aging neuroscience

Authors' code: wyqmath/admeta (no license)

Status: code verified, 4 files readable, 4 matches

[2266] Code ↔ Paper doi:10.3389/fncom.2026.1816522 [paper, repository]

MEG state dynamics of sentence generation: evidence for a compensatory segmentation mechanism in healthy aging.

Journal: Frontiers in computational neuroscience

Authors' code: MIPLabCH/myPLS (GPL-2.0)

Status: code verified, 37 files readable, 2 matches

[2267] Code ↔ Paper doi:10.3389/fnhum.2026.1869918 [paper, repository]

Single-subject auditory ERP-BCI performance enhancement in ALS via an AI coding assistant prompt.

Journal: Frontiers in human neuroscience

Authors' code: mikito-ogino/aide-bci-analysis (no license)

Status: code verified, 36 files readable, 10 matches

[2268] doi:10.3389/fnsys.2026.1880737 [paper]

Autonomic-salience stability as a candidate Gate for awake low-dose ketamine: a systems neuroscience framework with a clinical anchor.

Journal: Frontiers in systems neuroscience

Status: code on request

[2269] Code ↔ Paper doi:10.3389/fpain.2026.1850836 [paper, repository]

Diffusion tensor imaging in chronic tension-type headache.

Journal: Frontiers in pain research (Lausanne, Switzerland)

Authors' code: dicemt/DTI-NODDI (AGPL-3.0)

Status: code verified, 5 files readable

[2270] Code ↔ Paper doi:10.3389/fphar.2026.1813396 [paper, repository]

LTF promotes central nervous system leukemia progression via neutrophil serine proteases.

Journal: Frontiers in pharmacology

Authors' code: HuasongYu/GO_Gene_Search (no license)

Status: code verified, 2 files readable

[2271] doi:10.3389/ftox.2026.1783704 [paper, data]

Modular <i>in vitro</i> evaluation of buparlisib-polymeric nanomedicines in 2D and 3D models of glioblastoma.

Journal: Frontiers in toxicology

Status: data only, 1 dataset cited

[2272] Code ↔ Paper doi:10.3390/e28070738 [paper, repository]

Probabilistic Forecasting and Information-Theoretic Analysis of Multivariate fMRI Dynamics.

Journal: Entropy (Basel, Switzerland)

Authors' code: ab126/fmri_forecasting (Apache-2.0), Zenodo 20341604 (Apache-2.0)

Status: code verified, 59 files readable, 20 matches

[2273] Code ↔ Paper doi:10.64898/2026.06.23.26355958 [paper, repository]

Motor imagery interventions in stroke patients modulate their brain-heart network dynamics

Journal: medRxiv (preprint)

Authors' code: minepy (no license)

Status: code verified

[2274] Code ↔ Paper doi:10.7554/elife.109622 [paper, repository]

Distinct involvements of the subthalamic nucleus subpopulations in reward-biased decision-making in monkeys.

Journal: eLife

Authors' code: OSF jdk9v (no license)

Status: code verified, 37 files readable, 1 match

[2275] doi: [paper, data]

Orientation-Aware Diffusion Super-Resolution for 3T-Like Fetal MRI from Routine 1.5T Scans.

Journal: Proceedings of machine learning research

Status: data only, 1 dataset cited

[2276] doi: [paper, data]

Structural and Quantitative MRI Signal Features in Pediatric Focal Cortical Dysplasia: Clinical Relevance.

Journal: Physiological research

Status: data only, 2 datasets cited

Tuesday, 30 June 2026 (36 papers)

[2277] Code ↔ Paper doi:10.1007/s00221-026-07343-5 [paper, repository]

Motor cortex excitability during spine shape-judgment in adolescent idiopathic scoliosis: a TMS motor evoked potential study.

Journal: Experimental brain research

Authors' code: OSF y5shp (no license)

Status: code verified, 2 files readable, 2 matches

[2278] Code ↔ Paper doi:10.1007/s10827-026-00940-x [paper, repository]

Hierarchical learning creates invariant schema within plastic neural networks.

Journal: Journal of computational neuroscience

Authors' code: jre411/bdENN (no license)

Status: code verified, 25 files readable, 6 matches

[2279] doi:10.1016/j.bpr.2026.100276 [paper]

Cortical brain entropy architecture reveals multidimensional structure of schizophrenia.

Journal: Biophysical reports

Status: code on request

[2280] doi:10.1016/j.celrep.2026.117599 [paper]

Immunotherapy with B28, an antibody to Aβ oligomers, potently decreases amyloid plaques, microgliosis, and memory decline in APP knock-in mice.

Journal: Cell reports

Status: code on request

[2281] doi:10.1016/j.isci.2026.116581 [paper]

Peripheral inflammation impairs glymphatic function, contributing to neurodegeneration in Alzheimer's disease.

Journal: iScience

Status: code on request

[2282] doi:10.1016/j.isci.2026.116626 [paper, data]

Phospholipid flippases ATP8A1 and ATP8A2 regulate GABA<sub>A</sub> receptor trafficking through distinct mechanisms in hippocampal neurons.

Journal: iScience

Status: code on request, 1 dataset cited

[2283] doi:10.1016/j.isci.2026.116634 [paper]

Keratinocytes and PDGF-B/PDGFRβ signaling modulate peripheral opioid tolerance.

Journal: iScience

Status: code on request

[2284] Code ↔ Paper doi:10.1016/j.neurobiolaging.2026.06.012 [paper, repository]

Brain structure in the cingulate cortex and locus coeruleus in late life is associated with engagement in complex mental activities across the life span.

Journal: Neurobiology of aging

Authors' code: OSF 63ays (no license)

Status: code verified, 2 files readable, 3 matches

[2285] doi:10.1016/j.omtn.2026.102996 [paper]

Lipid nanoparticles enable mRNA delivery to diverse cell types of the inner Retina.

Journal: Molecular therapy. Nucleic acids

Status: code on request

[2286] Code ↔ Paper doi:10.1016/j.xcrm.2026.102904 [paper, repository]

High-dose furmonertinib as first-line treatment for untreated EGFR-mutated advanced NSCLC with central nervous system metastases: A phase 2 trial.

Journal: Cell reports. Medicine

Authors' code: broadinstitute/gatk (Apache-2.0)

Status: code verified, 2,000 files readable, 2 matches

[2287] doi:10.1016/j.xpro.2026.104667 [paper, data]

Protocol for diffusion magnetic resonance imaging and tractography in ex vivo mouse models.

Journal: STAR protocols

Status: data only, 2 datasets cited

[2288] Code ↔ Paper doi:10.1038/s41467-026-74092-y [paper, repository]

High-rate phase association with travel time neural fields.

Journal: Nature communications

Authors' code: DaDaCheng/phase_association (MIT), Zenodo 19766525 (MIT)

Status: code verified, 22 files readable

[2289] Code ↔ Paper doi:10.1038/s41467-026-74227-1 [paper, repository]

Age-related changes in behavioural and neural variability in a decision-making task.

Journal: Nature communications

Authors' code: Fenying-Zang/Ageing_behavioral_and_neural_variability (MIT)

Status: code verified, 36 files readable, 16 matches

[2290] doi:10.1038/s41467-026-74775-6 [paper, data]

Select microbial metabolites promote tau aggregation in a murine tauopathy model.

Journal: Nature communications

Status: data only, 2 datasets cited

[2291] Code ↔ Paper doi:10.1038/s41467-026-74779-2 [paper, repository]

TRPC4/TRPC5 are critical for neuronal modulation by transcranial focused ultrasound in retrosplenial cortex in male mice.

Journal: Nature communications

Authors' code: awnsjjj/TRPC4-TRPC5-are-critical-for-neuronal-modulation-by-tFUS-in-retrosplenial-cortex-in-male-mice (MIT), Zenodo 15128201 (CC-BY-4.0), codeocean:1809197 (no license)

Status: code verified, 4 files readable, 1 match

[2292] doi:10.1038/s41467-026-75092-8 [paper, data]

Video-rate gigapixel ptychography via space-time neural field representations.

Journal: Nature communications

Status: data only, 1 dataset cited

[2293] doi:10.1038/s41598-026-56101-8 [paper, data]

Topological modeling of gene expression in the brain with Huntington's disease reveals selective disruption of co-expression network.

Journal: Scientific reports

Status: data only, 1 dataset cited

[2294] doi:10.1038/s41598-026-59487-7 [paper, data]

Neural signatures of hyper-realistic AI-generated faces: dissociating behavioral indistinguishability from implicit neural evaluation.

Journal: Scientific reports

Status: data only, 1 dataset cited

[2295] Code ↔ Paper doi:10.1038/s42003-026-10402-w [paper, repository]

Temporal orchestration of transcriptional and epigenomic programming underlying maternal embryonic diapause in a cricket model.

Journal: Communications biology

Authors' code: Kataoka-K-Lab/Dnigrofasciatus_EggDiapause (no license)

Status: code verified, 36 files readable, 9 matches

[2296] Code ↔ Paper doi:10.1038/s44321-026-00474-w [paper, repository]

Impaired gephyrin G-domain trimerization and phase separation in a patient with developmental epileptic encephalopathy.

Journal: EMBO molecular medicine

Authors' code: FilLieb/automated_synapse_analysis (MIT)

Status: code verified, 13 files readable, 1 match

[2297] Code ↔ Paper doi:10.1093/braincomms/fcag248 [paper, repository]

Field strength-dependent sensitivity of chemical exchange saturation transfer: a methodological comparison of 3 Tesla and 7 Tesla in a clinical cohort.

Journal: Brain communications

Authors' code: milecap/GliomaCEST-3T7T (MIT)

Status: code verified, 26 files readable, 21 matches

[2298] doi:10.1128/jvi.00656-26 [paper, data]

Neurotropism and interferon-dominated immune responses in a mouse-adapted coxsackievirus A16 infection model.

Journal: Journal of virology

Status: data only, 1 dataset cited

[2299] doi:10.1159/000553367 [paper, data]

Sudden Traumatic Noise Exposure Induces an Altered Wave I in the Auditory Brainstem Response in Human.

Journal: Audiology & neuro-otology

Status: data only, 1 dataset cited

[2300] doi:10.1172/jci195639 [paper, data]

Therapeutic delivery of microRNAs discovered to target deregulated glioblastoma pathways inhibits tumor growth in mice.

Journal: The Journal of clinical investigation

Status: code on request, 1 dataset cited

[2301] doi:10.1242/bio.062414 [paper, data]

Autophagic flux blockade under hypocapnia reveals CO2-sensitive regulation of autophagy-lysosome homeostasis.

Journal: Biology open

Status: data only, 1 dataset cited

[2302] doi:10.1364/boe.604286 [paper]

Computational validation of optical adaptive depth steering for continuous-wave fNIRS.

Journal: Biomedical optics express

Status: code on request

[2303] Code ↔ Paper doi:10.1371/journal.ppat.1014315 [paper, repository]

A single Citrobacter rodentium infection in Pink1 knockout and wild-type mice leads to regional blood-brain-barrier perturbation and limited microglial activation without dopamine neuron axon terminal loss.

Journal: PLoS pathogens

Authors' code: liu-yikang/sherm-rodentskullstrip (GPL-3.0), louis-erictrudeau/trudeau-lab (MIT)

Status: code verified, 21 files readable, 5 matches

[2304] Code ↔ Paper doi:10.3389/fncel.2026.1713437 [paper, repository]

Single-nucleus transcriptomics identifies cell cycle and synaptic pathway dysregulation during OPC-to-glioma progression.

Journal: Frontiers in cellular neuroscience

Authors' code: dennishuang02/bbp53n_glioma_submission (no license)

Status: code verified, 6 files readable, 4 matches

[2305] doi:10.3389/fnhum.2026.1832475 [paper]

Optimization of stimulus color for peripheral SSVEP-based brain-computer interfaces.

Journal: Frontiers in human neuroscience

Status: code on request

[2306] doi:10.3389/fphar.2026.1870571 [paper, data]

Tissue-autonomous pharmacological direction: how target expression landscapes convert balanced compounds into tissue-selective agents.

Journal: Frontiers in pharmacology

Status: data only, 3 datasets cited

[2307] Code ↔ Paper doi:10.3389/fphys.2026.1827577 [paper, repository]

The all-or-none repolarization in cardiac ventricular myocytes: an <i>in silico</i> characterization of a relevant biomarker of ventricular action potential.

Journal: Frontiers in physiology

Authors' code: Zenodo 19666107 (CC-BY-4.0)

Status: code verified, 1 file readable

[2308] doi:10.3390/biomedicines14071484 [paper, data]

HDDF2-A Novel Patient-Derived Fibroblast Line from Huntington's Disease with Prominent Cellular Senescence and polyQ Pathology.

Journal: Biomedicines

Status: data only, 1 dataset cited

[2309] doi:10.3390/cells15131192 [paper, data]

Generation of Blood Vascular Endothelial-Neural 3D Organoids by Serial Induction of Differentiation on Human iPSC-Derived Embryoid Bodies.

Journal: Cells

Status: data only, 1 dataset cited

[2310] doi:10.3390/ijms27135902 [paper, data]

Functional Expression of Nicotinic Receptors on iPSC-Derived Astrocytes and Signalling Disturbances by a Panel of Neonicotinoid Pesticides and Their Metabolites.

Journal: International journal of molecular sciences

Status: data only, 1 dataset cited

[2311] Code ↔ Paper doi:10.3390/ijms27135920 [paper, repository]

Metabolomic Classification of Myalgic Encephalomyelitis/Chronic Fatigue Syndrome via Explainable Ensemble Learning and Pareto-Guided Feature Selection.

Journal: International journal of molecular sciences

Authors' code: drhilal/ME-CFS-study (no license)

Status: code verified, 1 file readable, 5 matches

[2312] Code ↔ Paper doi:10.34133/csbj.0157 [paper, repository]

MetaOmixTools: A User-Friendly Web Suite for Meta-analysis of Ranked Features and Functional Enrichment.

Journal: Computational and structural biotechnology journal

Authors' code: emekate00/metaomixtools (no license)

Status: code verified, 70 files readable, 5 matches

Monday, 29 June 2026 (33 papers)

[2313] doi:10.1002/advs.76336 [paper, data]

Biodegradable Acoustic Targeting for Ultrasound-Supported Gene Therapy (BATUS) in Glioblastoma.

Journal: Advanced science (Weinheim, Baden-Wurttemberg, Germany)

Status: data only, 1 dataset cited

[2314] Code ↔ Paper doi:10.1002/dad2.70406 [paper, repository]

Deep contrastive learning framework identifies cell-type-specific drug targets in Alzheimer's disease.

Journal: Alzheimer's & dementia (Amsterdam, Netherlands)

Authors' code: yuxin212/CLARITY (no license), ChengF-Lab/CLARITY (no license)

Status: code verified, 56 files readable

[2315] doi:10.1016/j.isci.2026.116443 [paper]

High-definition transcranial direct current stimulation enhances exercise-induced hypoalgesia in patients with chronic low back pain.

Journal: iScience

Status: code on request

[2316] Code ↔ Paper doi:10.1016/j.isci.2026.116541 [paper, repository]

The role of ucOCN in aerobic exercise induced amelioration of autism spectrum disorder phenotypes.

Journal: iScience

Authors' code: Zenodo 20341874 (CC-BY-4.0)

Status: code verified, 2 files readable, 1 match

[2317] doi:10.1021/acs.jpclett.6c01632 [paper, data]

Spiking without Resets: Continuous Integrate-and-Fire Dynamics in Neuronal Circuits.

Journal: The journal of physical chemistry letters

Status: data only, 2 datasets cited

[2318] doi:10.1021/acsomega.6c01108 [paper, data]

"Behavioral and Neuroinflammatory Evaluation of a Novel Isoxazole-5-One Derivative in Animal Models of Alzheimer's Disease via TNF-α, COX-2, IL-6, and NF-κB Modulation".

Journal: ACS omega

Status: data only, 5 datasets cited

[2319] Code ↔ Paper doi:10.1038/s41467-026-74976-z [paper, repository]

Real-time robust autofocus method enabling sustained intravital scanning light field imaging.

Journal: Nature communications

Authors' code: yuedi-wang/AFsLF (GPL-2.0), Zenodo 20695290 (GPL-2.0)

Status: code verified, 6 files readable

[2320] Code ↔ Paper doi:10.1038/s41598-026-58789-0 [paper, repository]

Metaheuristic hyperparameter optimization of deep neural networks for demographic-aware autism spectrum disorder classification.

Journal: Scientific reports

Authors' code: mohammedaly-tech/Demographic-Aware-ASD-Classification).An (no license), Zenodo 20419300 (CC-BY-4.0), mohammedaly-tech/demographic-aware-asd-classification (other)

Status: code verified, 24 files readable, 1 match

[2321] Code ↔ Paper doi:10.1073/pnas.2604111123 [paper, repository]

Multiscale characterization of the human claustrum from histology to MRI.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: navonacalarco/Claustrum (CC-BY-4.0)

Status: code verified, 5 files readable, 2 matches

[2322] Code ↔ Paper doi:10.1093/braincomms/fcag253 [paper, repository]

Disease detection and classification in temporal lobe epilepsy: step-wise versus simultaneous AI decision models in a multisite neuroimaging study.

Journal: Brain communications

Authors' code: meta-pytorch/captum (BSD-3-Clause)

Status: code verified, 274 files readable, 4 matches

[2323] Code ↔ Paper doi:10.1136/svn-2025-004471 [paper, repository]

Characteristics of brain structural damage related to cerebral small vessel disease in general population with intracranial artery stenosis.

Journal: Stroke and vascular neurology

Authors' code: anniepan-pumc/TBSS-ICAS (MIT)

Status: code verified, 7 files readable, 2 matches

[2324] Code ↔ Paper doi:10.1162/imag.a.1285 [paper, repository]

Individualized mapping of functional brain networks in older adulthood.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: DCAN-Labs/compare_matrices_to_assign_networks (other), cjl2007/PFM-Depression (no license)

Status: code verified, 75 files readable, 5 matches

[2325] Code ↔ Paper doi:10.1162/imag.a.1287 [paper, repository]

Is the whole more than the sum of its parts? Considering global and local features of the connectome improves prediction of individuals and phenotypes.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: YaleYipLab/CRAM (no license)

Status: code verified, 15 files readable, 1 match

[2326] doi:10.1186/s12868-026-01018-1 [paper, data]

Combined maternal separation and limited bedding-nesting increase goal tracking, delay discounting, and impulsive action, and moderate sign-tracking-perseverance associations in male rats.

Journal: BMC neuroscience

Status: data only, 1 dataset cited

[2327] doi:10.1186/s13020-026-01446-5 [paper, data]

The IL-17A modulating astrocytic activity was associated with the electroacupuncture-mediated improvement of sensorimotor ability after stroke.

Journal: Chinese medicine

Status: data only, 4 datasets cited

[2328] Code ↔ Paper doi:10.1186/s13059-026-04177-w [paper, repository]

Genomic sequence evolution underlying human neocortical interareal diversification.

Journal: Genome biology

Authors' code: JCVenterInstitute/NSForest (MIT), yal054/snATACutils (MIT), FduZhuLab/spatial_and_snMultiome (MIT), Zenodo 20581795 (MIT)

Status: code verified, 227 files readable, 27 matches

[2329] Code ↔ Paper doi:10.1371/journal.pcbi.1014438 [paper, repository]

GATE: Adaptive learning with working memory by information gating in multi-lamellar hippocampal formation.

Journal: PLoS computational biology

Authors' code: gate-world/gate (no license)

Status: code verified, 50 files readable, 1 match

[2330] Code ↔ Paper doi:10.1371/journal.pcbi.1014458 [paper, repository]

Neuronal excitability and parameter variability in the Hodgkin-Huxley model.

Journal: PLoS computational biology

Authors' code: alon67/HodgkinHuxleyVariability (no license)

Status: code verified, 24 files readable, 14 matches

[2331] Code ↔ Paper doi:10.1371/journal.pgen.1012170 [paper, repository]

Genome wide association study meta-analysis of neuropathologic lesions of Alzheimer's disease and related dementias in a multi-site autopsy cohort.

Journal: PLoS genetics

Authors' code: beecham-lab/ADRD-Neuropathology-Scripts (MIT)

Status: code verified, 61 files readable, 4 matches

[2332] Code ↔ Paper doi:10.1371/journal.pgen.1012196 [paper, repository]

Microtubule stiffening by the doublecortin-domain protein ZYG-8 contributes to mitotic spindle orientation during zygote division in Caenorhabditis elegans.

Journal: PLoS genetics

Authors' code: Zenodo 14246919 (cecill-2.1)

Status: code verified, 514 files readable, 3 matches

[2333] doi:10.1371/journal.pone.0321830 [paper, data]

Long-term neuron tracking reveals balance of stability and plasticity in functional properties.

Journal: PloS one

Status: data only, 1 dataset cited

[2334] Code ↔ Paper doi:10.1371/journal.pone.0352334 [paper, repository]

Dexamethasone restores blood-brain barrier integrity in an in vitro heatstroke model.

Journal: PloS one

Authors' code: StrokaLab/JAnaP (no license)

Status: code verified, 58 files readable

[2335] doi:10.17879/freeneuropathology-2026-9593 [paper, data]

Expansion microscopy of banked brain tissue.

Journal: Free neuropathology

Status: data only, 3 datasets cited

[2336] doi:10.2147/jpr.s598801 [paper, data]

Pharmacological Inhibition of Tropomyosin Receptor Kinase B Reverses Remifentanil-Induced Postoperative Hyperalgesia and Synaptic Remodeling.

Journal: Journal of pain research

Status: data only, 1 dataset cited

[2337] doi:10.3389/fncel.2026.1807829 [paper, data]

Nicotine combined with estrogen activates protein kinase PKCι and TAO, while inhibiting specific MAP kinase pathways in cultured human neurons: an atlas of kinase activities for nicotine use disorder.

Journal: Frontiers in cellular neuroscience

Status: data only, 1 dataset cited

[2338] Code ↔ Paper doi:10.3389/fnhum.2026.1820376 [paper, repository]

The neural dynamics of political socio-pragmatic violations: an ERP study.

Journal: Frontiers in human neuroscience

Authors' code: OSF sgbqf (no license)

Status: code verified, 1 file readable, 2 matches

[2339] Code ↔ Paper doi:10.3389/fonc.2026.1816015 [paper, repository]

Modality-level attribution and redundancy-aware radiomics for MRI-based differentiation of melanoma and NSCLC brain metastases.

Journal: Frontiers in oncology

Authors' code: georgeDV2002/metastasis_radiomics (BSD-3-Clause)

Status: code verified, 25 files readable, 11 matches

[2340] Code ↔ Paper doi:10.3390/biology15131038 [paper, repository]

Genetic Basis of Divergent Growth and Muscle Development in Purebred and Crossbred Leizhou Black Goats Revealed by Whole-Genome Resequencing.

Journal: Biology

Authors' code: animal.omics.pro/code/index.php (no license)

Status: code verified

[2341] Code ↔ Paper doi:10.3390/biomedicines14071475 [paper, repository]

ETDACVO: Structural-Fidelity-Aware Evolutionary Co-Optimization for Robust and Explainable Brain Tumor MRI Classification.

Journal: Biomedicines

Authors' code: IndrakumarK/Evolutionary-Co-Optimization-of-Data-Augmentation-and-Learning-Dynamics-for-BT-MRI-Classification (other)

Status: code verified, 47 files readable, 18 matches

[2342] doi:10.3390/diagnostics16132029 [paper, data]

FLAME: Federated Learning and Aggregated Multi-Model Ensemble for Multi-Class Alzheimer's Disease Stage Classification from Structured Clinical Data.

Journal: Diagnostics (Basel, Switzerland)

Status: data only, 1 dataset cited

[2343] doi:10.3390/jimaging12070288 [paper, data]

GDNet: A Robust 2.5D Multimodal MRI Brain Tumor Segmentation Framework with EMA Stabilization and Tumor-Aware Sampling.

Journal: Journal of imaging

Status: data only, 1 dataset cited

[2344] Code ↔ Paper doi:10.3758/s13428-026-03096-9 [paper, repository]

Low-cost, open-source, full-stack software and Arduino-based hardware for control of commercially available animal behavior systems.

Journal: Behavior research methods

Authors' code: yadavlabs/open-source-rat-behavior (BSD-3-Clause)

Status: code verified, 35 files readable, 15 matches

[2345] Code ↔ Paper doi:10.7554/elife.109717 [paper, repository]

Retrosplenial cortex enables context-dependent goal-directed sensorimotor transformation.

Journal: eLife

Authors' code: LSENS-BMI-EPFL/behavior_control (no license), LSENS-BMI-EPFL/NWB_converter (no license), LSENS-BMI-EPFL/Bech_Dard_process_NWB (no license), LSENS-BMI-EPFL/Bech_Dard_plot_figures (MIT), Zenodo 17424306 (CC-BY-4.0)

Status: code verified, 144 files readable, 21 matches

Sunday, 28 June 2026 (4 papers)

[2346] doi:10.1111/imb.70052 [paper, data]

Genome-wide identification of olfactory receptor and odorant-binding protein gene families and their roles in Heliothine chemosensory evolution.

Journal: Insect molecular biology

Status: data only, 1 dataset cited

[2347] Code ↔ Paper doi:10.1177/26331055261460858 [paper, repository]

The Geometric Signatures of Brain State Transitions: Recursive Informational Curvature Reveals Hidden Dynamics in Primate Cortex.

Journal: Neuroscience insights

Authors' code: explorerquantummind/benchmarkecogric (Apache-2.0)

Status: code verified, 39 files readable, 12 matches

[2348] doi:10.3390/biology15131028 [paper]

Temporal Response Function-Driven Representational Similarity Analysis for Speech Perception Decoding with MEG and EEG.

Journal: Biology

Status: code on request

[2349] Code ↔ Paper doi:10.3390/brainsci16070680 [paper, repository]

ION-Sim: A Novel Open-Source Simulation Framework for Intraoperative Neurophysiological Monitoring.

Journal: Brain sciences

Authors' code: riccardo-budai/ION_Simula (no license)

Status: code verified, 100 files readable, 29 matches

Saturday, 27 June 2026 (18 papers)

[2350] Code ↔ Paper doi:10.1002/mrm.70490 [paper, repository]

Dependence of the Extra-Cellular Diffusion Coefficient on the Fractions of Neurites and Cell Bodies in Gray Matter.

Journal: Magnetic resonance in medicine

Authors' code: Connectome20 (no license)

Status: code verified

[2351] doi:10.1016/j.dcn.2026.101770 [paper, data]

Neural representations of the value of helping the family during adolescence.

Journal: Developmental cognitive neuroscience

Status: data only, 1 dataset cited

[2352] Code ↔ Paper doi:10.1016/j.isci.2026.116575 [paper, repository]

Mapping human microglial morphological diversity via handcrafted and deep learning-derived image features.

Journal: iScience

Authors' code: Ksilink/PhenoLink (LGPL-2.1)

Status: code verified, 198 files readable

[2353] doi:10.1038/s41419-026-09062-9 [paper]

Knockdown of endothelial Serpine1 improves stroke recovery by attenuating peri-infarct blood flow and blood-brain barrier disruption.

Journal: Cell death & disease

Status: code on request

[2354] Code ↔ Paper doi:10.1038/s41467-026-73994-1 [paper, repository]

Prediction error correlates in the striosome-dopamine circuit emerge from information gain.

Journal: Nature communications

Authors' code: dirkbeck/dopamine_modeling (no license)

Status: code verified, 42 files readable, 17 matches

[2355] Code ↔ Paper doi:10.1038/s41467-026-74358-5 [paper, repository]

Brain-inspired spatial intelligence for embodied agents.

Journal: Nature communications

Authors' code: facebookresearch/habitat-sim (MIT), facebookresearch/habitat-lab (MIT), naokiyokoyama/ovon (no license), XinyuSun/PSL-InstanceNav (no license), facebookresearch/open-eqa (MIT), Heathcliff-saku/BSC-Nav (no license)

Status: code verified, 1,606 files readable, 16 matches

[2356] Code ↔ Paper doi:10.1038/s41467-026-74565-0 [paper, repository]

The functional neurobiology of dispositions towards negative emotions.

Journal: Nature communications

Authors' code: MaurizioSicorello/NeuroSquare_repo (no license), canlab/CanlabCore (GPL-2.0), Zenodo 20119671 (CC-BY-4.0)

Status: code verified, 2,054 files readable, 8 matches

[2357] Code ↔ Paper doi:10.1038/s41467-026-74722-5 [paper, repository]

Covalent pan-TEAD inhibitors block YAP activity and demonstrate brain penetrance in a Hippo-dependent cancer model.

Journal: Nature communications

Authors' code: broadinstitute/cdsr_models (no license)

Status: code verified, 5 files readable, 2 matches

[2358] doi:10.1038/s41467-026-74819-x [paper, data]

The role of supraoptic hypothalamic arginine vasopressin neurons in aging-associated water balance and thermoregulatory deficits in male mice.

Journal: Nature communications

Status: data only, 1 dataset cited

[2359] Code ↔ Paper doi:10.1038/s41467-026-74953-6 [paper, repository]

In-scanner thoughts contribute to resting-state functional connectivity.

Journal: Nature communications

Authors' code: nimh-sfim/fc_introspection (CC0-1.0)

Status: code verified, 47 files readable, 15 matches

[2360] doi:10.1038/s44318-026-00841-w [paper]

NDR kinase SAX-1 controls dendrite branch-specific elimination during neuronal remodeling in C. elegans.

Journal: The EMBO journal

Status: data only

[2361] doi:10.1186/s12866-026-05351-7 [paper, data]

Integrated analysis of gut microbiota, serum metabolomics, and proteomics reveals novel associations with clinical symptoms in patients with cerebral infarction.

Journal: BMC microbiology

Status: data only, 1 dataset cited

[2362] doi:10.1186/s12974-026-03910-3 [paper, data]

Hereditary spastic paraplegia (HSP) gene 11 (Spg11) attenuates lipid accumulation in myeloid cells and neuroinflammation in the midbrain without affecting α-synuclein pathology.

Journal: Journal of neuroinflammation

Status: data only, 1 dataset cited

[2363] doi:10.3390/antiox15070807 [paper, data]

Betaine Attenuates Hyperhomocysteinemia-Induced Cognitive Impairment by Suppressing Oxidative Stress and Activating the PI3K/AKT/GSK-3β Pathway.

Journal: Antioxidants (Basel, Switzerland)

Status: data only, 1 dataset cited

[2364] doi:10.3390/brainsci16070678 [paper, data]

CP5-Centered Parietal HD-tACS Is Associated with Improved Performance in a Smartphone-Based Shopping Task in Older Adults: A Behavioral and EEG Investigation.

Journal: Brain sciences

Status: data only, 1 dataset cited

[2365] doi:10.3390/cancers18132092 [paper, data]

TGFB2 as a Prognostic Biomarker Associated with Myeloid-Enriched, Multi-Checkpoint-Activated Immunosuppression in Diffuse Glioma: A Multi-Cohort Transcriptomic Study.

Journal: Cancers

Status: code on request, 1 dataset cited

[2366] doi:10.3390/diagnostics16132012 [paper, data]

Power and Phase Fusion Spectrogram with Three-Dimensional Convolution and Vision Transformer for Seizure Detection.

Journal: Diagnostics (Basel, Switzerland)

Status: data only, 1 dataset cited

[2367] doi:10.3390/s26134091 [paper, data]

Hypnogram-Driven Automatic Sleep Staging and a Quality-Index Assessment Through a Two-Stage LSTM-DNN Ensemble Learning Approach Using Multi-Biosignal Features for Sleep Disorder Detection.

Journal: Sensors (Basel, Switzerland)

Status: data only, 1 dataset cited

Friday, 26 June 2026 (31 papers)

[2368] doi:10.1002/advs.76340 [paper, data]

Molecular and Cellular Hallmarks of Age-Related Vestibular Hair Cell Degeneration.

Journal: Advanced science (Weinheim, Baden-Wurttemberg, Germany)

Status: data only, 1 dataset cited

[2369] Code ↔ Paper doi:10.1007/s00406-026-02302-1 [paper, repository]

Exploring the genetic correlation between inflammatory bowel disease and psychiatric disorders: insights from genome-wide association studies.

Journal: European archives of psychiatry and clinical neuroscience

Authors' code: duanxian0301/TWAS (no license)

Status: code verified, 18 files readable

[2370] doi:10.1007/s10072-026-09188-w [paper, data]

Mapping integrated care for brain tumour-related epilepsy in the Italian RIN-IRCCS network.

Journal: Neurological sciences : official journal of the Italian Neurological Society and of the Italian Society of Clinical Neurophysiology

Status: data only, 2 datasets cited

[2371] doi:10.1007/s10753-026-02549-9 [paper]

A Dynamic and Complex Early Inflammatory Response in Blood and Cerebrospinal Fluid of Severe Traumatic Brain Injury Patients: A Dual Platform Analysis.

Journal: Inflammation

Status: code on request

[2372] Code ↔ Paper doi:10.1016/j.isci.2026.116498 [paper, repository]

The Tower Foraging Park: A paradigm for studying cognitive and motor processes underlying behavioral flexibility in freely moving mice.

Journal: iScience

Authors' code: robbe-neuroteam/TowerForagingPark_Hardware (other), robbe-neuroteam/TowerForagingPark_iScience_Figures (no license)

Status: code verified, 18 files readable, 14 matches

[2373] doi:10.1016/j.isci.2026.116525 [paper]

Longitudinal co-activation pattern analysis of menstrual cycle-related brain dynamics in primary dysmenorrhea.

Journal: iScience

Status: code on request

[2374] Code ↔ Paper doi:10.1016/j.isci.2026.116586 [paper, repository]

Condition-specific neural signatures of reactivation during post-retrieval rest: An EEG study.

Journal: iScience

Authors' code: OSF 2zjda (no license)

Status: code verified, 27 files readable, 7 matches

[2375] Code ↔ Paper doi:10.1038/s41380-026-03694-1 [paper, repository]

Targeting cortico-striatal-amygdalar networks via theta-band frontoparietal synchronization in opioid use disorder: a randomized tACS-fMRI Trial.

Journal: Molecular psychiatry

Authors' code: rkuplicki/LIBR_MOCD (no license), soleimanighazaleh/frontoparietal-tacs-oud (no license)

Status: code verified, 53 files readable, 7 matches

[2376] doi:10.1038/s41386-026-02471-6 [paper]

Investigating the effect of increased dopamine signaling on cerebral blood flow in Major Depressive Disorder: a double-blind randomized placebo-controlled study.

Journal: Neuropsychopharmacology : official publication of the American College of Neuropsychopharmacology

Status: code on request

[2377] doi:10.1038/s41420-026-03228-2 [paper, data]

Nitric oxide refines retinal circuit architecture independently of retinal wave dynamics.

Journal: Cell death discovery

Status: data only, 1 dataset cited

[2378] Code ↔ Paper doi:10.1038/s41467-026-74515-w [paper, repository]

Advancing fair and explainable machine learning for neuroimaging dementia pattern classification in multi-racial and multi-ethnic populations.

Journal: Nature communications

Authors' code: UTHSCSA-NAL/explainable_and_fair_ML_for_ADRD (no license)

Status: code verified, 16 files readable, 8 matches

[2379] Code ↔ Paper doi:10.1038/s41467-026-74566-z [paper, repository]

Low-dimensional and optimised representations of high-level information in the expert brain.

Journal: Nature communications

Authors' code: costantinoai/chess-expertise-2025 (MIT), Zenodo 19392282 (MIT)

Status: code verified, 309 files readable, 40 matches

[2380] Code ↔ Paper doi:10.1038/s41467-026-74783-6 [paper, repository]

Neural and computational correlates of strategic aborting and long-run policy optimization in the dorsolateral prefrontal cortex.

Journal: Nature communications

Authors' code: ryzhang1/dlPFC-strategic-aborting (Apache-2.0)

Status: code verified, 18 files readable

[2381] Code ↔ Paper doi:10.1038/s41467-026-74817-z [paper, repository]

Early-Stage Corticostriatal Hyperactivity Impairs Cognitive Flexibility Alongside Striatal Cholinergic Dysfunction in an Alzheimer's Disease Model.

Journal: Nature communications

Authors' code: chen-ruifeng/ex-vivo-confocal (no license)

Status: code verified, 28 files readable

[2382] Code ↔ Paper doi:10.1038/s41593-026-02320-1 [paper, repository]

The mitochondrial unfolded protein response in human microglia disrupts neuronal-glial communication and promotes senescence.

Journal: Nature neuroscience

Authors' code: Zenodo 20507096 (CC-BY-4.0)

Status: empty repository

[2383] Code ↔ Paper doi:10.1038/s41593-026-02342-9 [paper, repository]

Interpretable abstractions of artificial neural networks predict behavior and neural activity during human information gathering.

Journal: Nature neuroscience

Authors' code: simonedambrogio/HybridModellingProject (MIT), Zenodo 19685085 (MIT)

Status: code verified, 141 files readable, 17 matches

[2384] doi:10.1038/s41598-026-59018-4 [paper]

Gut microbiome composition and predicted functions relate to growth and behavior in a Japanese preschool cohort.

Journal: Scientific reports

Status: code on request

[2385] doi:10.1038/s44321-026-00459-9 [paper, data]

Anle138b ameliorates pathological phenotypes in mouse and cellular models of Huntington's disease.

Journal: EMBO molecular medicine

Status: data only, 1 dataset cited

[2386] Code ↔ Paper doi:10.1080/19490976.2026.2693397 [paper, repository]

Gut <i>Proteobacteria</i> glycine metabolism regulates neuroplasticity, motivation, and reinstatement of cocaine self-administration in mice.

Journal: Gut microbes

Authors' code: mooredf22/quasispectral (no license)

Status: code verified, 2 files readable, 1 match

[2387] doi:10.1093/geroni/igag064 [paper, data]

BrainHealth 360: cognitive intervention for older adults designed using a participatory framework.

Journal: Innovation in aging

Status: data only, 1 dataset cited

[2388] Code ↔ Paper doi:10.1093/psyrad/kkag026 [paper, repository]

fMRI-based prediction of eye gaze during naturalistic movie viewing reveals eye-movement-related brain activity.

Journal: Psychoradiology

Authors' code: OSF chgpx (no license)

Status: code verified, 7 files readable, 2 matches

[2389] Code ↔ Paper doi:10.1136/tsaco-2025-001974 [paper, repository]

Association of alcohol use with helmet use in cyclists: analysis of the National Trauma Data Bank.

Journal: Trauma surgery & acute care open

Authors' code: toofastdan117/TQP_bike_alcohol_helmets (no license)

Status: code verified, 5 files readable, 7 matches

[2390] doi:10.1177/11769351261460625 [paper, data]

GFAP-Dependent Transcriptional Dynamics and Cellular Heterogeneity in Primary, Recurrent, and Grade III Gliomas.

Journal: Cancer informatics

Status: data only, 1 dataset cited

[2391] Code ↔ Paper doi:10.1186/s11689-026-09713-0 [paper, repository]

DRP1 mutations associated with EMPF1 encephalopathy perturb the transcriptional profile and maturation of cortical neurons.

Journal: Journal of neurodevelopmental disorders

Authors' code: CostanzoJa/Neuronal-Analyses (MIT), mogilenko-lab/gama_vivian_drp1_bulkrnaseq (MIT), Zenodo 20213748 (MIT), rensutheart/MEL-Fiji-Plugin (no license)

Status: code verified, 118 files readable, 39 matches

[2392] doi:10.1186/s13024-026-00965-x [paper, data]

Early binding of anti-amyloid antibodies to CAA drives complement activation, inflammation and ARIA in mice.

Journal: Molecular neurodegeneration

Status: data only, 1 dataset cited

[2393] Code ↔ Paper doi:10.1186/s13040-026-00574-w [paper, repository]

Interpretable machine learning for Parkinson's disease diagnosis, staging, and biological mechanism exploration: a multicenter analysis.

Journal: BioData mining

Authors' code: jy2137/PD-radiomics (no license)

Status: dead link

[2394] Code ↔ Paper doi:10.1371/journal.pcbi.1014460 [paper, repository]

Quantitative anatomy and biophysical modeling of ascending neuromodulatory systems in the developing rat neocortex.

Journal: PLoS computational biology

Authors' code: Zenodo 14587678 (CC-BY-4.0)

Status: code verified, 2 files readable, 1 match

[2395] Code ↔ Paper doi:10.3389/fnsyn.2026.1843277 [paper, repository]

High-frequency, high-intensity electrical stimulation selectively activates human fast-spiking interneurons.

Journal: Frontiers in synaptic neuroscience

Authors' code: flosfor/pvbs (GPL-3.0)

Status: code verified, 3 files readable, 2 matches

[2396] doi:10.3390/brainsci16070668 [paper, data]

Animate Categories Show Higher Cross-Duration Representational Selectivity in Ventral Occipitotemporal Cortex Under Brief Visual Input.

Journal: Brain sciences

Status: data only, 1 dataset cited

[2397] doi:10.3390/ijms27135758 [paper, data]

Diffusion Tensor Imaging Along the Perivascular Space (DTI-ALPS) as a Neuroimaging Biomarker of Glymphatic Function in Neurodegenerative Diseases: A Systematic Review.

Journal: International journal of molecular sciences

Status: data only, 1 dataset cited

[2398] doi:10.7717/peerj-cs.3860 [paper, data]

Systematic review of unveiling the potential of AI using machine learning and deep learning methods in neurodegenerative diseases.

Journal: PeerJ. Computer science

Status: data only, 1 dataset cited

Thursday, 25 June 2026 (40 papers)

[2399] Code ↔ Paper doi:10.1002/advs.76205 [paper, repository]

CHCHD10 Mitigates Alzheimer's Disease-Related Phenotypes in Association With Epigenetic Remodeling in Directly Reprogrammed Neurons.

Journal: Advanced science (Weinheim, Baden-Wurttemberg, Germany)

Authors' code: tliu203/CHCHD10-Alleviates-Alzheimer-s-Disease-Pathogenesis-by-Modulating-Epigenetic-Landscape- (MIT)

Status: code verified, 42 files readable, 22 matches

[2400] Code ↔ Paper doi:10.1007/s10439-026-04209-3 [paper, repository]

Enhancement of Cerebral Oxygenation by Lower-Limb Neuromuscular Electrical Stimulation in Stroke Survivors.

Journal: Annals of biomedical engineering

Authors' code: Siagnos/CV-Model-NMES (no license)

Status: code verified, 6 files readable, 4 matches

[2401] Code ↔ Paper doi:10.1016/j.isci.2026.116490 [paper, repository]

Central and peripheral neuromuscular mechanisms underlying functional recovery heterogeneity in tibial plateau fractures.

Journal: iScience

Authors' code: Zenodo 20339370 (CC-BY-4.0)

Status: code verified, 5 files readable, 5 matches

[2402] Code ↔ Paper doi:10.1016/j.isci.2026.116601 [paper, repository]

Random auditory stimulation during sleep disturbs traveling slow waves and declarative memory.

Journal: iScience

Authors' code: OSF wjzs9 (no license)

Status: code verified, 67 files readable, 20 matches

[2403] doi:10.1016/j.jneumeth.2026.110839 [paper, data]

Methods for measuring neural activity during voluntary wheel running.

Journal: Journal of neuroscience methods

Status: data only, 1 dataset cited

[2404] doi:10.1016/j.stemcr.2026.102971 [paper]

A highly efficient method to differentiate CGRP-expressing peptidergic nociceptors from human induced pluripotent stem cells.

Journal: Stem cell reports

Status: code on request

[2405] Code ↔ Paper doi:10.1016/j.stemcr.2026.102977 [paper, repository]

Integrative analysis of drug-gene signatures in human pluripotent stem cells reveals prazosin as a novel SQSTM1 regulator for ALS therapeutics.

Journal: Stem cell reports

Authors' code: maximilianh/crisporWebsite (other), usadellab/trimmomatic (GPL-3.0)

Status: code verified, 1,012 files readable, 2 matches

[2406] Code ↔ Paper doi:10.1016/j.xpro.2026.104659 [paper, repository]

Protocol for simultaneous in vivo two-photon imaging and locomotion quantification during olfactory stimulation and pharmacology in walking Drosophila.

Journal: STAR protocols

Authors' code: SunLabWestlake/cia (no license)

Status: code verified, 9 files readable, 2 matches

[2407] Code ↔ Paper doi:10.1021/acs.analchem.6c03315 [paper, repository]

Profiling Protein Aggregate Size Using Single-Molecule Array Technology.

Journal: Analytical chemistry

Authors' code: Zenodo 20140389 (MIT), yingzhang1122/simoabrightnessanalysis (MIT)

Status: code verified, 4 files readable

[2408] Code ↔ Paper doi:10.1021/acs.est.6c05750 [paper, repository]

Quantifying Olfactory and Alveolar Deposition of Ultrafine Particles Using Multiscale Modeling: Implications for Brain Exposure.

Journal: Environmental science & technology

Authors' code: Zenodo 12639507 (CC-BY-4.0)

Status: code verified

[2409] doi:10.1021/acsmedchemlett.6c00272 [paper, data]

Optimization of Pyrazole-Based Activators of Kv3.1.

Journal: ACS medicinal chemistry letters

Status: data only, 1 dataset cited

[2410] doi:10.1038/s41467-026-73802-w [paper, data]

Karyoptosis mediates cell death and neurodegeneration upon proteotoxic stress.

Journal: Nature communications

Status: data only, 12 datasets cited

[2411] Code ↔ Paper doi:10.1038/s41467-026-74124-7 [paper, repository]

Glioma-intrinsic MAPK/ERK signaling promotes immunotherapy efficacy through T cell infiltration and interferon responses.

Journal: Nature communications

Authors' code: Zenodo 22040374 (MIT)

Status: code verified, 12 files readable, 1 match

[2412] Code ↔ Paper doi:10.1038/s41467-026-74357-6 [paper, repository]

Hippocampo-neocortical interaction as compressive retrieval-augmented generation.

Journal: Nature communications

Authors' code: ellie-as/hippocampal-neocortical-RAG (MIT), Zenodo 20215885 (MIT)

Status: code verified, 73 files readable, 29 matches

[2413] Code ↔ Paper doi:10.1038/s41467-026-74466-2 [paper, repository]

Neuromorphic hierarchical modular reservoirs.

Journal: Nature communications

Authors' code: netneurolab/conn2res (BSD-3-Clause), netneurolab/netneurotools (BSD-3-Clause), netneurolab/milisav_hierarchical_modularity (BSD-3-Clause), Zenodo 20360160 (BSD-3-Clause)

Status: code verified, 167 files readable, 16 matches

[2414] Code ↔ Paper doi:10.1038/s41593-026-02333-w [paper, repository]

Learning shapes neural geometry in the primate prefrontal cortex.

Journal: Nature neuroscience

Authors' code: m-j-wojcik/pfc_learning (no license)

Status: code verified, 13 files readable, 6 matches

[2415] Code ↔ Paper doi:10.1038/s41593-026-02345-6 [paper, repository]

Human hippocampal ripples tune cortical responses based on predicted uncertainty.

Journal: Nature neuroscience

Authors' code: frdarya/GenerativeRipples (no license)

Status: code verified, 19 files readable, 7 matches

[2416] Code ↔ Paper doi:10.1038/s41598-026-54110-1 [paper, repository]

An adaptive feature extraction lightweight network for enhanced landslide detection.

Journal: Scientific reports

Authors' code: pryf.github.io/afl-net (no license)

Status: code verified

[2417] doi:10.1038/s44319-026-00843-z [paper]

Arf1 is involved in Neisseria meningitidis-induced cortical branched F-actin network reorganization.

Journal: EMBO reports

Status: data only

[2418] Code ↔ Paper doi:10.1093/braincomms/fcag245 [paper, repository]

Reduced pre-movement subthalamic beta desynchronization marks motor deficit in Parkinson's disease.

Journal: Brain communications

Authors' code: slowriver322/pMI_BetaDesync_BrainCom (MIT)

Status: code verified, 11 files readable, 6 matches

[2419] doi:10.1097/ee9.0000000000000490 [paper, data]

Within- and between-study site variations in ambient air pollution exposure at ages 9-10 years in the Adolescent Brain Cognitive Development (ABCD) Study.

Journal: Environmental epidemiology (Philadelphia, Pa.)

Status: data only, 1 dataset cited

[2420] doi:10.1159/000553173 [paper, data]

Successful MRgFUS VIM Thalamotomy for Essential Tremor Nearby Cavernous Malformation: Image Case Report.

Journal: Stereotactic and functional neurosurgery

Status: data only, 1 dataset cited

[2421] Code ↔ Paper doi:10.1162/imag.a.1283 [paper, repository]

The language network responds robustly to sentences across tasks.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: RuiminGao/DiffTasks (MIT)

Status: code verified, 44 files readable, 4 matches

[2422] doi:10.1162/imag.a.1288 [paper]

Neighborhood disadvantage and brain myelination: Insights from infancy to childhood.

Journal: Imaging neuroscience (Cambridge, Mass.)

Status: code on request

[2423] Code ↔ Paper doi:10.1186/s12967-026-08414-5 [paper, repository]

Integrative transcriptomic analysis identifies meningeal-hippocampal immune communication in Alzheimer's disease.

Journal: Journal of translational medicine

Authors' code: yccbio/ad (no license)

Status: empty repository

[2424] doi:10.1186/s12984-026-02065-9 [paper]

Decoding motor imagery related to major mimetic muscles from electroencephalography.

Journal: Journal of neuroengineering and rehabilitation

Status: code on request

[2425] doi:10.1186/s13059-026-04126-7 [paper, data]

Srr2-dependent SOX2 levels govern the chromatin and transcriptional landscape of adult neural stem cell fate decisions in mouse.

Journal: Genome biology

Status: data only, 3 datasets cited

[2426] doi:10.1186/s13195-026-02119-z [paper, data]

Age-dependent diagnostic and correlational architecture of multiplex plasma biomarkers in Alzheimer's disease: a cross-ethnic, cross-platform validation study.

Journal: Alzheimer's research & therapy

Status: data only, 9 datasets cited

[2427] Code ↔ Paper doi:10.1186/s40359-026-05043-x [paper, repository]

Reinforcement learning-driven adaptive game therapy for cognitive impairment patients with improved vision transformer based detection model.

Journal: BMC psychology

Authors' code: kaggle.com/code/ahmedashrafahmed (no license)

Status: dead link

[2428] doi:10.1186/s40478-026-02351-6 [paper, data]

A rare missense variant impacting NEK1 kinase function is associated with ALS.

Journal: Acta neuropathologica communications

Status: data only, 2 datasets cited

[2429] Code ↔ Paper doi:10.1364/boe.596576 [paper, repository]

Hadamard-encoded scattered light imaging for faster, signal-enhanced mapping of brain fiber orientations.

Journal: Biomedical optics express

Authors' code: boe-17-7-3854-s001.pdf (no license)

Status: code found, still to be checked

[2430] Code ↔ Paper doi:10.1371/journal.pone.0348957 [paper, repository]

Steps against the burden of Parkinson's disease (StepuP): Protocol of a randomized controlled trial elucidating the biomechanical and neurophysiological mechanisms of a speed dependent treadmill training intervention.

Journal: PloS one

Authors' code: juliuswelzel/stepup_setup (no license)

Status: code verified, 45 files readable, 2 matches

[2431] doi:10.21037/jtd-2026-1-0269 [paper, data]

Silencing of BCAT1 induces ferroptosis and inhibits brain metastasis of non-small cell lung cancer via activating the cGAS-STING pathway.

Journal: Journal of thoracic disease

Status: data only, 1 dataset cited

[2432] doi:10.3389/fcell.2026.1816627 [paper, data]

Integrative transcriptomic and proteomic profiling reveals altered thymocyte development and microenvironment remodeling during natural thymic atrophy.

Journal: Frontiers in cell and developmental biology

Status: data only, 1 dataset cited

[2433] doi:10.3389/frai.2026.1852196 [paper, data]

FuzzyFed-CNN: secure and explainable multimodal federated learning for early Alzheimer's diagnosis.

Journal: Frontiers in artificial intelligence

Status: data only, 2 datasets cited

[2434] doi:10.3390/bioengineering13070741 [paper]

Mapping the Global Trajectory and Key Trends of Temporal Interference Stimulation.

Journal: Bioengineering (Basel, Switzerland)

Status: code on request

[2435] doi:10.3390/pathophysiology33030043 [paper, data]

A Differentiated SH-SY5Y Model of Hypoxic-Ischaemic Injury Reveals Dynamic Transcriptomic Responses During Reoxygenation.

Journal: Pathophysiology : the official journal of the International Society for Pathophysiology

Status: data only, 1 dataset cited

[2436] doi:10.3390/s26134045 [paper, data]

Brain Signal for Secure EEG Biometric Authentication: A Comprehensive Survey.

Journal: Sensors (Basel, Switzerland)

Status: data only, 8 datasets cited

[2437] Code ↔ Paper doi:10.7554/elife.108675 [paper, repository]

SynaptoTagMe, a toolkit for in vivo mapping and modulating neurotransmission at single-cell resolution.

Journal: eLife

Authors' code: colonramoslab/Cuentas-Condori-et-al.-2025-Toolkit- (MIT)

Status: code verified, 3 files readable

[2438] Code ↔ Paper doi:10.7554/elife.99611 [paper, repository]

Intrinsic properties link a network model to zebra finch song.

Journal: eLife

Authors' code: doi:10.5061/dryad.wdbrv162x (no license)

Status: code verified

Wednesday, 24 June 2026 (51 papers, 26 on this page)

[2439] doi:10.1002/gps3.70039 [paper, data]

Associations between wearable-device-measured daytime and nighttime light exposures and dementia risk: A prospective cohort study.

Journal: General psychiatry

Status: data only, 1 dataset cited

[2440] doi:10.1007/s00401-026-03042-1 [paper]

Tau368 improves p-tau diagnostic accuracy for FTLD-tau from FTLD-TDP.

Journal: Acta neuropathologica

Status: code on request

[2441] Code ↔ Paper doi:10.1016/j.bpsgos.2026.100782 [paper, repository]

Early Adversity Imprints Multisystem Biological Aging: A Longitudinal Study of Adversity Dimensions and Aging Phenotypes Across Adolescence.

Journal: Biological psychiatry global open science

Authors' code: cantonacci/stress-bioaging (MIT)

Status: code verified, 14 files readable, 12 matches

[2442] Code ↔ Paper doi:10.1016/j.cub.2026.05.068 [paper, repository]

An abstract relational map emerges in the human medial prefrontal cortex with consolidation.

Journal: Current biology : CB

Authors' code: alonbaram2/many-maps-alon (no license), alonbaram2/CurrentBiology2026 (no license)

Status: code verified, 1,339 files readable, 10 matches

[2443] Code ↔ Paper doi:10.1016/j.eclinm.2026.104049 [paper, repository]

Data leakage in feature selection invalidates reported classification accuracy for autism diagnosis from fMRI.

Journal: EClinicalMedicine

Authors' code: v1dya/XAI-for-ASD (no license)

Status: dead link

[2444] Code ↔ Paper doi:10.1016/j.isci.2026.116047 [paper, repository]

Deciding to simulate: Cognitive mechanisms of predicting the decisions of others.

Journal: iScience

Authors' code: OSF svyma (no license)

Status: code verified, 10 files readable, 4 matches

[2445] doi:10.1016/j.isci.2026.116384 [paper]

Human-relevant transcranial magnetic stimulation in awake rhesus macaques assisted by a non-invasive head and arm fixation apparatus.

Journal: iScience

Status: code on request

[2446] Code ↔ Paper doi:10.1016/j.isci.2026.116458 [paper, repository]

Neural tracking of prosodic and statistical rhythms jointly supports artificial language learning.

Journal: iScience

Authors' code: OSF qtrz9 (no license), milosen/alparc (MIT)

Status: code verified, 58 files readable, 21 matches

[2447] doi:10.1016/j.isci.2026.116593 [paper]

WNK-SPAK-NKCC1/KCC2 pathway disrupts chloride homeostasis and drives hyperactivation of PVN-CRH neurons in essential hypertension.

Journal: iScience

Status: code on request

[2448] doi:10.1016/j.xhgg.2026.100637 [paper]

A lethal form of ASCC3 disease: Severe global developmental delay, axial hypotonia, hypoplasia of corpus callosum, hypothyroidism, and micropenis.

Journal: HGG advances

Status: code on request

[2449] Code ↔ Paper doi:10.1016/j.ynirp.2026.100365 [paper, repository]

Analysis of acute stroke-like lesions in MELAS: Distribution, potential boundaries and spreading pattern.

Journal: Neuroimage. Reports

Authors' code: Marius1311/Non-negative-ICA (BSD-3-Clause), DlutMedimgGroup/Chinese-Brain-PET-Template (MIT)

Status: code verified, 15 files readable

[2450] doi:10.1038/s41398-026-04202-3 [paper]

Single-nucleus transcriptomic atlas of sexually dimorphic molecular responses to sub-chronic variable stress in the mouse hippocampus.

Journal: Translational psychiatry

Status: code on request

[2451] Code ↔ Paper doi:10.1038/s41467-026-74153-2 [paper, repository]

Regional, functional and transcriptomic decoding of multidimensional brain structure alterations in obsessive-compulsive disorder.

Journal: Nature communications

Authors' code: biorender.com/bnwqaux (no license), ColeLab/ColeAnticevicNetPartition (other), richardajdear/AHBA_gradients (no license), csleo95/Multi-phenotype-morphometry (MIT), isebenius/MIND (no license), enigma.ini.usc.edu/ongoing/enigma-shape-analysis (no license), Zenodo 19770466 (MIT), codeocean:7065197 (no license)

Status: code verified, 102 files readable, 11 matches

[2452] Code ↔ Paper doi:10.1038/s41467-026-74215-5 [paper, repository]

Multi-metric evaluations of acute psychedelic effects on fMRI brain entropy.

Journal: Nature communications

Authors' code: anders-s-olsen/CopBET (no license), Zenodo 19914432 (CC-BY-4.0)

Status: code verified, 454 files readable, 17 matches

[2453] Code ↔ Paper doi:10.1038/s41467-026-74243-1 [paper, repository]

Spiking neural network decoders of finger forces from high-density intramuscular microelectrode arrays.

Journal: Nature communications

Authors' code: FarahBaracat/snn-fingerforce-decoding (no license), Zenodo 19724261 (CC-BY-4.0)

Status: code verified, 114 files readable, 14 matches

[2454] Code ↔ Paper doi:10.1038/s41467-026-74556-1 [paper, repository]

Hypernetworks induce stable hyperlocking.

Journal: Nature communications

Authors' code: Zenodo 19821152 (MIT)

Status: code verified, 3 files readable, 3 matches

[2455] doi:10.1038/s41467-026-74635-3 [paper, data]

Flexible artificial compound eye cameras for ultrawide continuous tracking in mixed reality.

Journal: Nature communications

Status: code on request, 1 dataset cited

[2456] Code ↔ Paper doi:10.1038/s41467-026-74768-5 [paper, repository]

Parallel cholinergic circuit in oculomotor nucleus to control eye movements and REM sleep.

Journal: Nature communications

Authors' code: codeocean:9306840 (no license), 18810386233/Parallel-circuit-in-oculomotor-nucleus-to-control-eye-movements-and-REM-sleep (MIT), codeocean:7736716 (no license)

Status: code verified, 10 files readable, 2 matches

[2457] doi:10.1038/s41467-026-74814-2 [paper, data]

Structural mechanism of Necrocide 1 activation of human TRPM4 that triggers necrosis by sodium overload.

Journal: Nature communications

Status: data only, 2 datasets cited

[2458] Code ↔ Paper doi:10.1038/s41467-026-74818-y [paper, repository]

Stable readout of visual representations mediates flexible generalization.

Journal: Nature communications

Authors' code: ramanujansrinath/flexigain (MIT)

Status: code verified, 39 files readable, 2 matches

[2459] Code ↔ Paper doi:10.1038/s41586-026-10670-w [paper, repository]

Zero-shot design of drug-binding proteins via neural iterative selection-expansion.

Journal: Nature

Authors' code: polizzilab/LASErMPNN (MIT), polizzilab/nise (MIT), benf549/CARPdock (MIT), Zenodo 18308430 (CC-BY-4.0)

Status: code verified, 59 files readable, 13 matches

[2460] Code ↔ Paper doi:10.1038/s42003-026-10382-x [paper, repository]

ScQCenrich enables multi-metric quality control for single-cell RNA sequencing.

Journal: Communications biology

Authors' code: lemonlyy755/scQCenrich (other), Zenodo 20050798 (CC-BY-4.0)

Status: code verified, 62 files readable, 13 matches

[2461] doi:10.1038/s42003-026-10529-w [paper, data]

Top-down influence of the inferior frontal gyrus on motor cortex excitability during pain empathy.

Journal: Communications biology

Status: code on request, 1 dataset cited

[2462] Code ↔ Paper doi:10.1038/s43587-026-01149-4 [paper, repository]

The blood metabolome of brain health in midlife and influences of genes, microbiome and exposome.

Journal: Nature aging

Authors' code: omics-x/BloodMetabolomics_Genes_Gut_Exposome (no license)

Status: code verified, 26 files readable, 22 matches

[2463] Code ↔ Paper doi:10.1038/s43856-026-01689-1 [paper, repository]

Comprehensive analysis of interactions between brain aging and late-onset psychoses using heuristic mapping models.

Journal: Communications medicine

Authors' code: maese005/oncoPredict (no license), figshare 32204805 (CC-BY-4.0)

Status: code verified, 8 files readable

[2464] doi:10.1044/2026_jslhr-25-00615 [paper, data]

A Moderated Mediation Model Linking Speech-in-Noise Exposure, Speech Perception in Noise Ability, Loneliness, and Depression.

Journal: Journal of speech, language, and hearing research : JSLHR

Status: data only, 1 dataset cited

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