Every paper, by date: page 3

4,974 papers with a page: 2,882 with their authors' code, 597 with code on request, 1,495 with data only. The most recent first, 100 a page. Page 3 of 50: 3 September 2026 to 1 September 2026.

Thursday, 3 September 2026 (24 papers, 16 on this page)

[201] Code ↔ Paper doi:10.1162/imag.a.1353 [paper, repository]

Model-based cardiac field artefact correction for OP-MEG.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: Zenodo 20209782 (MIT), sascha-woelk/opm-cfa-correction (MIT)

Status: code verified, 28 files readable, 25 matches

[202] Code ↔ Paper doi:10.1162/imag.a.1354 [paper, repository]

Development of a 24-channel 3T phased-array coil for fMRI in awake monkeys: Mitigating spatiotemporal artifacts in ferumoxytol-weighted functional connectivity estimation.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: RIKEN-BCIL/bcil (no license)

Status: code verified, 12 files readable

[203] Code ↔ Paper doi:10.1371/journal.pcbi.1014672 [paper, repository]

Robust circular cluster-based statistics for respiration-brain coupling.

Journal: PLoS computational biology

Authors' code: LeonardoRicci/iaaft (GPL-3.0), teresaberther/respmethods (no license)

Status: code verified, 42 files readable, 13 matches

[204] doi:10.3389/fnbot.2026.1889303 [paper]

Visual-affect-guided spatiotemporal graph modeling of disaster-image diffusion for embodied decision support.

Journal: Frontiers in neurorobotics

Status: code on request

[205] Code ↔ Paper doi:10.3389/fneur.2026.1796739 [paper, repository]

Network localization of regional intrinsic neural activity alterations in migraine and their neurochemical correlates.

Journal: Frontiers in neurology

Authors' code: juryxy/JuSpace (no license)

Status: code verified, 21 files readable

[206] doi:10.3389/fneur.2026.1849021 [paper, data]

Early pharmacologic venous thromboembolism prophylaxis and in-hospital mortality in ICU patients with intracerebral hemorrhage: a landmark, propensity-weighted cohort study.

Journal: Frontiers in neurology

Status: code on request, 1 dataset cited

[207] doi:10.3389/fnhum.2026.1902252 [paper, data]

Hidden in plain sight: verbal declarative memory effects of exercise are eight times larger than aggregate estimates suggest.

Journal: Frontiers in human neuroscience

Status: data only, 1 dataset cited

[208] Code ↔ Paper doi:10.3389/fnins.2026.1907950 [paper, repository]

Studying dynamic sound source localization in a virtual maze with EEG and psychophysics.

Journal: Frontiers in neuroscience

Authors' code: OSF ymgw3 (no license)

Status: code verified, 2 files readable, 3 matches

[209] doi:10.3389/fphys.2026.1939236 [paper]

<i>Alx1</i> is required for enamel knot formation during incisor morphogenesis.

Journal: Frontiers in physiology

Status: data only

[210] doi:10.3389/fpsyg.2026.1911950 [paper, data]

The spacing words and pseudowords reading test: normative data to measure peripheral acquired dyslexia in the Italian adult population.

Journal: Frontiers in psychology

Status: data only, 1 dataset cited

[211] Code ↔ Paper doi:10.3389/fsysb.2026.1873899 [paper, repository]

A systems microbiology framework for reproducible multi-dataset omics integration with application to long COVID.

Journal: Frontiers in systems biology

Authors' code: steppenwolf0/longCOVIDMCCREFS (MIT)

Status: code verified, 35 files readable, 8 matches

[212] doi:10.3389/fsysb.2026.1897648 [paper, data]

Integrative genome-scale metabolic model of GABAergic neurons reveals metabolic signatures across the mild cognitive impairment - Alzheimer disease continuum.

Journal: Frontiers in systems biology

Status: data only, 1 dataset cited

[213] doi:10.3390/jcm15176822 [paper]

Predictors of Six-Month Functional Outcome After Chronic Subdural Hematoma Surgery: Logistic Regression Versus Machine Learning.

Journal: Journal of clinical medicine

Status: code on request

[214] doi:10.3390/nu18172887 [paper]

Unmetabolized Folic Acid: Biology, Epidemiology, and Clinical Consequences: A Systematic Review.

Journal: Nutrients

Status: code on request

[215] Code ↔ Paper doi:10.7554/elife.108408 [paper, repository]

Frequency and laminar profile of feature-specific visual activity revealed by interleaved EEG-fMRI.

Journal: eLife

Authors' code: TommyClausner/laminarfMRIv2 (MIT), Zenodo 7211757 (other-open), tommyclausner/mri-volume-masker-3000-tm (GPL-3.0)

Status: code verified, 209 files readable, 18 matches

[216] Code ↔ Paper doi:10.7554/elife.109104 [paper, repository]

Complementary vertebrate <i>Wac</i> models exhibit phenotypes relevant to DeSanto-Shinawi Syndrome.

Journal: eLife

Authors' code: nordneurogenomicslab/publications (no license)

Status: code verified, 14 files readable, 3 matches

Wednesday, 2 September 2026 (24 papers)

[217] Code ↔ Paper doi:10.1002/mco2.70931 [paper, repository]

Unveiling Functional Architecture of Human Thalamus: AStereoelectroencephalography Study.

Journal: MedComm

Authors' code: lead-dbs.org (no license)

Status: code verified

[218] Code ↔ Paper doi:10.1016/j.isci.2026.117412 [paper, repository]

Transcriptomic landscape of microglia in mouse models of social dysfunction and oxytocin-mediated recovery.

Journal: iScience

Authors' code: MasaTsurutani/Transcriptomic-Landscape-of-Microglia-in-Mouse-Models-of-Social-Dysfunction-and-Oxytocin-Mediated (no license)

Status: empty repository, 1 file readable

[219] doi:10.1038/s41398-026-04401-y [paper]

Longitudinal brain dynamics and prediction of craving changes in individuals with methamphetamine use disorder.

Journal: Translational psychiatry

Status: code on request

[220] Code ↔ Paper doi:10.1038/s41467-026-76569-2 [paper, repository]

Self-organization of vascularized muscle from bovine embryonic stem cells.

Journal: Nature communications

Authors' code: YuyaSanaki/NMJ-analysis (Apache-2.0), git.embl.de/grp-mif/image-analysis (no license), LRpz/VascuMap (CC-BY-NC-4.0)

Status: code verified, 20 files readable, 4 matches

[221] Code ↔ Paper doi:10.1038/s41467-026-76956-9 [paper, repository]

Innervated human cardiac muscle model reveals sympathetic drivers of KCNH2-associated arrhythmias.

Journal: Nature communications

Authors' code: danihae/bio-image-unet (MIT), danihae/iEHM-analysis (MIT)

Status: code verified, 71 files readable, 3 matches

[222] Code ↔ Paper doi:10.1038/s41467-026-77168-x [paper, repository]

Cholinergic-dependent dopamine signals in mouse dorsomedial striatum are regulated by frontal but not sensory cortices.

Journal: Nature communications

Authors' code: Zenodo 21651635 (CC-BY-4.0)

Status: code verified, 27 files readable, 2 matches

[223] Code ↔ Paper doi:10.1038/s41467-026-77302-9 [paper, repository]

Identification and validation of central amygdala FGFR1 as a therapeutic target for alcohol use disorder using single-nucleus sequencing in rats.

Journal: Nature communications

Authors' code: leohog/Fgfr1_analysis (MIT)

Status: code verified, 3 files readable, 4 matches

[224] Code ↔ Paper doi:10.1038/s42003-026-10881-x [paper, repository]

On variability in local field potentials.

Journal: Communications biology

Authors' code: Zenodo 21959626 (MIT), Mohsenparto/On_ATV_in_LFP (MIT)

Status: code verified, 14 files readable, 3 matches

[225] Code ↔ Paper doi:10.1038/s44400-026-00125-4 [paper, repository]

Regulators of interferon-responsive microglia uncovered by Genome-wide CRISPRi screening.

Journal: NPJ dementia

Authors' code: immunogenomics/presto (no license), reetm09/mixscale (no license)

Status: code verified, 45 files readable, 5 matches

[226] Code ↔ Paper doi:10.1126/sciadv.adu3955 [paper, repository]

Defective EV-mediated transport of SHH alters neural fate specification in EPM1 epilepsy.

Journal: Science advances

Authors' code: coolbutuseless/ggpattern (MIT), VeronicaMP/Defective-EV-Mediated-Transport-of-SHH-Alters-Neural-Fate-Specification-in-EPM1-epilepsy (MIT), Zenodo 21453507 (MIT)

Status: code verified, 118 files readable, 7 matches

[227] Code ↔ Paper doi:10.1126/sciadv.aeb3209 [paper, repository]

The actomyosin cortex controls t-tubule remodeling in skeletal muscle.

Journal: Science advances

Authors' code: Zenodo 28838 (other-open), tferr/scripts (GPL-3.0)

Status: code verified, 58 files readable, 2 matches

[228] doi:10.1126/sciadv.aeb6839 [paper, data]

A male-biased hypothalamic circuit modulates postmating sleep suppression in mice.

Journal: Science advances

Status: data only, 1 dataset cited

[229] Code ↔ Paper doi:10.1126/sciadv.aed2952 [paper, repository]

Activation of transposable elements is linked to a region- and cell type-specific interferon response in Parkinson's disease.

Journal: Science advances

Authors' code: Zenodo 7589548 (other-open), molecular-neurogenetics.github.io/truster (no license), Zenodo 17434560 (CC-BY-4.0), molecular-neurogenetics/pd_asap_garza2025 (MIT)

Status: code verified, 394 files readable, 17 matches

[230] Code ↔ Paper doi:10.1126/sciadv.aef2894 [paper, repository]

Human cortical networks trade communication efficiency for computational reliability.

Journal: Science advances

Authors' code: fabridamicelli.github.io/echoes (no license), netneurotools.readthedocs.io (no license), netneurolab.github.io/neuromaps (no license), kuffmode/yanat (MIT)

Status: code verified, 5 files readable

[231] Code ↔ Paper doi:10.1126/sciadv.aef9406 [paper, repository]

Fluorescent protein ticker tape (FPTT): Multiplexed recording of transcriptional dynamics in living cells and in vivo.

Journal: Science advances

Authors' code: Zenodo 20259137 (CC-BY-4.0)

Status: code verified

[232] Code ↔ Paper doi:10.1155/da/8792696 [paper, repository]

Connectome Gradient-Based Subtyping of Major Depressive Disorder Reveals Distinct Neurobiological and Transcriptomic Signatures.

Journal: Depression and anxiety

Authors' code: evarol/HYDRA (GPL-3.0), MICA-MNI/BrainSpace (BSD-3-Clause), Jfortin1/ComBatHarmonization (no license)

Status: code verified, 145 files readable, 2 matches

[233] Code ↔ Paper doi:10.1371/journal.pbio.3003982 [paper, repository]

No evidence for modulation of the readiness potential by respiratory phase during natural breathing.

Journal: PLoS biology

Authors' code: Zenodo 17715626 (CC-BY-4.0), lucasjeaybizot/breathingrp2025 (no license)

Status: code verified, 34 files readable, 4 matches

[234] Code ↔ Paper doi:10.1371/journal.pcbi.1014730 [paper, repository]

A unified model of short- and long-term plasticity: Effects on network connectivity and information capacity.

Journal: PLoS computational biology

Authors' code: IiroAhokainen/SL-STDP (Apache-2.0), Zenodo 22011941 (CC-BY-4.0)

Status: code verified, 58 files readable, 8 matches

[235] Code ↔ Paper doi:10.1523/jneurosci.0295-26.2026 [paper, repository]

Detection and Removal of Hyper-synchronous Artifacts in Massively Parallel Spike Recordings.

Journal: The Journal of neuroscience : the official journal of the Society for Neuroscience

Authors' code: doi:10.12751/incf.ni2018.0019 (no license)

Status: code verified

[236] Code ↔ Paper doi:10.1523/jneurosci.0889-25.2026 [paper, repository]

Neural Evidence for Action-Related Somatosensory Predictions.

Journal: The Journal of neuroscience : the official journal of the Society for Neuroscience

Authors' code: OSF yw8sa (no license)

Status: code found, not verified yet

[237] doi:10.1523/jneurosci.0925-26.2026 [paper, data]

Brain Architecture of Punishment Learning.

Journal: The Journal of neuroscience : the official journal of the Society for Neuroscience

Status: data only, 1 dataset cited

[238] Code ↔ Paper doi:10.7554/elife.104053 [paper, repository]

Brain cognition gaps reveal associations with dopamine and factors related to brain health through artificial intelligence prediction of functional connectome.

Journal: eLife

Authors' code: MorEsm/AI-based-Prediction-of-Cognitive-Function (CC-BY-4.0)

Status: code verified, 3 files readable, 6 matches

[239] Code ↔ Paper doi:10.7554/elife.105213 [paper, repository]

Mesoscale functional architecture in medial posterior parietal cortex.

Journal: eLife

Authors' code: web.ece.ucsb.edu/~riichirohira/topbm-2.05 (no license), riichirohira/BrainModules (MIT)

Status: code verified, 2 files readable

[240] Code ↔ Paper doi:10.7554/elife.111876 [paper, repository]

Distinct sensorimotor encoding in tuft dendrites and somata associated with action, correction, and learning.

Journal: eLife

Authors' code: kerlin-lab/TStracker (no license), kerlin-lab/tongue-classification (no license), kerlin-lab/Scheib_2026 (MIT)

Status: code verified, 511 files readable, 5 matches

Tuesday, 1 September 2026 (91 papers, 60 on this page)

[241] Code ↔ Paper doi:10.1001/jamanetworkopen.2026.33507 [paper, repository]

Illness Severity and Longitudinal Gray Matter Volumes Among People With Major Depressive Disorder.

Journal: JAMA network open

Authors' code: OSF rcfq7 (no license)

Status: empty repository

[242] Code ↔ Paper doi:10.1002/advs.77524 [paper, repository]

MethyAnno: An Interpretable Automated Annotation Method Leveraging Multi-Scale Information and Metric Learning Framework for scDNAm Data.

Journal: Advanced science (Weinheim, Baden-Wurttemberg, Germany)

Authors' code: BioX-NKU/MethyAnno (MIT)

Status: code verified, 22 files readable, 9 matches

[243] Code ↔ Paper doi:10.1002/alz.71714 [paper, repository]

Cross-tissue immune profiling of APOE ε4 reveals early dysregulation in Alzheimer's disease.

Journal: Alzheimer's & dementia : the journal of the Alzheimer's Association

Authors' code: Art83/AD_apoe (no license)

Status: dead link

[244] Code ↔ Paper doi:10.1002/alz.71773 [paper, repository]

Brain-derived plasma p-tau217 shows enhanced dynamic range for Alzheimer's disease neuropathological change.

Journal: Alzheimer's & dementia : the journal of the Alzheimer's Association

Authors' code: ysu001/PUP (BSD-3-Clause)

Status: code verified, 277 files readable, 1 match

[245] doi:10.1002/alz.71804 [paper, data]

A meta-refined human Alzheimer's disease-associated gene subset shows partial mouse-model pathway correspondence and limited cross-cohort machine-learning transportability.

Journal: Alzheimer's & dementia : the journal of the Alzheimer's Association

Status: data only, 1 dataset cited

[246] doi:10.1002/alz.71811 [paper]

Female vulnerability to microvascular transport dysfunction emerges early across the Alzheimer's disease continuum.

Journal: Alzheimer's & dementia : the journal of the Alzheimer's Association

Status: code on request

[247] Code ↔ Paper doi:10.1002/alz.71822 [paper, repository]

SynthPET: A 3D generative AI approach for FDG-PET image synthesis from T1-weighted MRI and ASL CBF in Alzheimer's disease.

Journal: Alzheimer's & dementia : the journal of the Alzheimer's Association

Authors' code: adni.loni.usc.edu/data-samples/access-data (no license)

Status: dead link

[248] Code ↔ Paper doi:10.1002/alz.71823 [paper, repository]

Cellular transcriptomic signatures underpinning the heterogeneity of depression in Alzheimer's disease.

Journal: Alzheimer's & dementia : the journal of the Alzheimer's Association

Authors' code: NCTrailRunner/NPS_manuscript (no license)

Status: code verified, 23 files readable, 8 matches

[249] doi:10.1002/brb3.71666 [paper, data]

Principal Components Analysis Relates Hippocampal Trisynaptic Circuit to Vividness of Visual Mental Imagery.

Journal: Brain and behavior

Status: data only, 1 dataset cited

[250] doi:10.1002/brb3.71684 [paper, data]

Evaluating the 8-Year Association Between Cognition and Beta Amyloid in the Dallas Lifespan Brain Study Cohort.

Journal: Brain and behavior

Status: data only, 1 dataset cited

[251] doi:10.1002/brb3.71701 [paper, data]

POFUT1 Serves as an Independent Prognostic Factor and Therapeutic Target by Activating the PI3K/AKT Pathway in Glioma.

Journal: Brain and behavior

Status: data only, 1 dataset cited

[252] doi:10.1002/cam4.72199 [paper, data]

Evaluation of the Expression and Prognosis of Neural-Related Products Expressed by Cancer-Derived Mesenchymal Stem Cells With the Characteristics of Neural Stem Cells.

Journal: Cancer medicine

Status: data only, 1 dataset cited

[253] Code ↔ Paper doi:10.1002/cns.71147 [paper, repository]

Unveiling the Distinctive Brain Functional Dynamics Between Parkinson's Disease and Progressive Supranuclear Palsy.

Journal: CNS neuroscience & therapeutics

Authors' code: netneurolab/neuromaps (CC-BY-NC-SA-4.0), Shijh123456/PD_PSP (no license)

Status: code verified, 70 files readable, 4 matches

[254] doi:10.1002/dev.70183 [paper]

Executive Function and Epigenetic Markers in Youth Exposed to Family and Community Violence in Childhood.

Journal: Developmental psychobiology

Status: code on request

[255] Code ↔ Paper doi:10.1002/glia.70201 [paper, repository]

Dorso-Ventral and Night-Day Regulation of Extracellular K<sup>+</sup> Dynamics in Mouse Hippocampal Astrocytes.

Journal: Glia

Authors' code: Nari-KIANI/Glia_3740732_Data (CC-BY-4.0), Zenodo 20933397 (CC-BY-4.0)

Status: code verified, 16 files readable, 4 matches

[256] Code ↔ Paper doi:10.1002/hbm.70608 [paper, repository]

Transient Elevation and Subsequent Normalization of Brain Age Gap During the Postpartum Period.

Journal: Human brain mapping

Authors' code: chang-hyun.park/postpartum-brain-age-prediction (MIT)

Status: code verified, 3 files readable, 3 matches

[257] Code ↔ Paper doi:10.1002/hbm.70627 [paper, repository]

Investigating the Contribution of Molecular-Enriched Functional Connectivity to Brain-Age Analysis.

Journal: Human brain mapping

Authors' code: ottaviadipasquale/react-fmri (MIT)

Status: code verified, 5 files readable

[258] Code ↔ Paper doi:10.1002/hbm.70628 [paper, repository]

EEG Biomarkers for Affective Disorders Diagnosis: An Evaluation and Validation Study.

Journal: Human brain mapping

Authors' code: yt-liu88/EEGBiomarkers-for-Affective-Disorders-Diagnosis (no license)

Status: code verified, 5 files readable, 6 matches

[259] Code ↔ Paper doi:10.1002/hbm.70635 [paper, repository]

Cerebral Cortical Structural Variation and General Cognitive Ability: Evidence From Mendelian Randomization.

Journal: Human brain mapping

Authors' code: jianyang-lab/gsmr (no license)

Status: code verified, 6 files readable, 1 match

[260] Code ↔ Paper doi:10.1002/hipo.70124 [paper, repository]

Association Between Anterior Hippocampal Gyrification and Episodic Memory Performance in Neurotypical Young Adults.

Journal: Hippocampus

Authors' code: khanlab/hippunfold (MIT), mic-dkfz/nnunet (Apache-2.0)

Status: code verified, 259 files readable, 2 matches

[261] Code ↔ Paper doi:10.1002/hipo.70131 [paper, repository]

Decoding Medial Entorhinal Cortical Dynamics Produces Planning-Like Alternations in Hippocampal theta Sequences.

Journal: Hippocampus

Authors' code: Zenodo 18340856 (CC-BY-4.0)

Status: code verified, 20 files readable, 8 matches

[262] Code ↔ Paper doi:10.1002/nbm.70368 [paper, repository]

Intra-MRI Head Motion Tracking and Correction: A Quantitative In Vivo Evaluation Framework.

Journal: NMR in biomedicine

Authors' code: zzariry/pyMocoKit (MIT)

Status: code verified, 17 files readable

[263] doi:10.1002/npr2.70150 [paper]

Sleep Deprivation and Neuronal Hyperexcitation Share Transcriptomic Signatures.

Journal: Neuropsychopharmacology reports

Status: data only

[264] doi:10.1002/sim.70712 [paper, data]

A Bayesian Spatiotemporal Model for Joint Estimation of Brain Activation and Connectivity in fMRI Studies.

Journal: Statistics in medicine

Status: data only, 2 datasets cited

[265] Code ↔ Paper doi:10.1007/s12021-026-09814-0 [paper, repository]

Application of Machine Learning Models to Identify Differences in Neural Electrophysiological Properties Across Estrous Cycle Phases.

Journal: Neuroinformatics

Authors' code: doi:10.5061/dryad.k0p2ngfgm (no license), Armaan-Raina/Estrous-Phase-Classification (MIT)

Status: code verified, 3 files readable, 4 matches

[266] Code ↔ Paper doi:10.1016/j.dcn.2026.101806 [paper, repository]

Same ages, different stages: Pubertal development in 9- and 10-year olds is associated with entropy of fMRI signals.

Journal: Developmental cognitive neuroscience

Authors' code: DCAN-Labs/abcd-hcp-pipeline (BSD-3-Clause)

Status: code verified, 8 files readable, 2 matches

[267] Code ↔ Paper doi:10.1016/j.jmro.2026.100225 [paper, repository]

Feasibility, image quality, and analytic usability of mobile 64 mT ultra-low-field MRI for infant brain imaging at 3 and 12 months in southern Malawi.

Journal: Journal of magnetic resonance open

Authors' code: UNITY-Physics (no license)

Status: code verified

[268] Code ↔ Paper doi:10.1016/j.nicl.2026.104053 [paper, repository]

Childhood white matter organization predicts adolescent internalizing problems among youth with and without ADHD.

Journal: NeuroImage. Clinical

Authors' code: chydeDeakin/Hyde_et_al_2026 (no license)

Status: code verified, 1 file readable

[269] Code ↔ Paper doi:10.1021/acs.jcim.6c01299 [paper, repository]

Targeting BCL-2 through Deep Learning-Based Drug Repurposing: A Multimodal Approach Combining Diffusion-Based Generative Modeling, Neural Relational Inference, and In Vitro Validation.

Journal: Journal of chemical information and modeling

Authors' code: DurdagiLab/Neuralplexer_Ligand_Scoring (MIT), DurdagiLab/Automate-Neural-relational-inference-NRI- (MIT)

Status: code verified, 17 files readable, 1 match

[270] Code ↔ Paper doi:10.1038/s41467-026-77248-y [paper, repository]

The mPFC-reuniens-hippocampus pathway links brain circuitry and neural plasticity in antidepressant response.

Journal: Nature communications

Authors' code: mveleanu/veleanu_et_al (MIT), Zenodo 21111701 (MIT)

Status: code verified, 22 files readable, 4 matches

[271] Code ↔ Paper doi:10.1038/s43856-026-01817-x [paper, repository]

Visual prompt engineering for multimodal and irregularly sampled medical data.

Journal: Communications medicine

Authors' code: Zenodo 20786553 (CC-BY-4.0), Cardio-AI/ViTiMM (no license)

Status: code verified, 34 files readable, 7 matches

[272] doi:10.1038/s44323-026-00105-0 [paper]

Tilia Tomentosa promotes sleep, preserving sleep structure.

Journal: Npj biological timing and sleep

Status: code on request

[273] Code ↔ Paper doi:10.1073/pnas.2609814123 [paper, repository]

Genetic architectures of brain-related traits are shaped by strong selective constraints.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: bulik/ldsc (GPL-3.0), huishengz/cns-selection (no license)

Status: code verified, 72 files readable, 10 matches

[274] Code ↔ Paper doi:10.1093/ageing/afag263 [paper, repository]

Cardiometabolic medication exposures and cognitive outcomes in Alzheimer's disease.

Journal: Age and ageing

Authors' code: Sabrina-wyh/Multicohort-Medication-AD (no license)

Status: code verified, 17 files readable, 5 matches

[275] Code ↔ Paper doi:10.1093/aje/kwag135 [paper, repository]

Depressive symptoms and neuroimaging markers of brain aging in an ethno-racially diverse sample: a Bayesian analysis.

Journal: American journal of epidemiology

Authors' code: SpatialHealth/KHANDLE-STAR_Depression_MRI (no license)

Status: code verified, 18 files readable, 1 match

[276] Code ↔ Paper doi:10.1093/bib/bbag485 [paper, repository]

Single-cell-level perturbation-induced and condition-related signal estimation with batch effect removal using NDreamer.

Journal: Briefings in bioinformatics

Authors' code: lugia-xiao/NDreamer (GPL-3.0), lugia-xiao/NDreamer_reproducible (GPL-3.0)

Status: code verified, 46 files readable, 24 matches

[277] Code ↔ Paper doi:10.1093/bib/bbag490 [paper, repository]

Systematic benchmarking and optimal strategy selection of cross-species integration methods.

Journal: Briefings in bioinformatics

Authors' code: figshare 31976259 (CC-BY-4.0)

Status: code verified, 37 files readable, 9 matches

[278] Code ↔ Paper doi:10.1093/brain/awag032 [paper, repository]

A rostral prefrontal mediolateral gradient predicts creativity in frontotemporal dementia.

Journal: Brain : a journal of neurology

Authors' code: OSF rtnzw (no license)

Status: code verified, 7 files readable, 2 matches

[279] doi:10.1093/brain/awag033 [paper, data]

Impairment of hippocampal gamma oscillations, mitochondria and neurovascular function in CADASIL.

Journal: Brain : a journal of neurology

Status: data only, 1 dataset cited

[280] Code ↔ Paper doi:10.1093/brain/awag039 [paper, repository]

Mapping the causal chain from genetic risk variants to lipid dysmetabolism in Parkinson's disease.

Journal: Brain : a journal of neurology

Authors' code: ruthbpaula/PD_multiomics (no license)

Status: code verified, 6 files readable, 11 matches

[281] doi:10.1093/brain/awag043 [paper, data]

Cytomegalovirus-induced T cell responses accelerate Alzheimer's disease progression in mice.

Journal: Brain : a journal of neurology

Status: data only, 1 dataset cited

[282] Code ↔ Paper doi:10.1093/brain/awag075 [paper, repository]

Modelling the temporal evolution of plasma p-tau217, amyloid PET, tau PET and cognition.

Journal: Brain : a journal of neurology

Authors' code: therneau/aftmodel (no license)

Status: code verified, 6 files readable

[283] Code ↔ Paper doi:10.1093/brain/awag131 [paper, repository]

Data-driven modelling of tau pathology reveals distinct progressive supranuclear palsy subtypes.

Journal: Brain : a journal of neurology

Authors' code: JaunmuktaneLab (no license)

Status: code verified

[284] Code ↔ Paper doi:10.1093/braincomms/fcag334 [paper, repository]

Functional and effective connectivity alterations relate to cognitive performance in aquaporin-4 antibody-positive neuromyelitis optica spectrum disorder.

Journal: Brain communications

Authors' code: pzeidman/dcm-peb-example (no license)

Status: code verified, 7 files readable, 2 matches

[285] Code ↔ Paper doi:10.1093/cercor/bhag110 [paper, repository]

Flexibility of internal attention: divergent spatiotemporal profiles for feature and object cueing.

Journal: Cerebral cortex (New York, N.Y. : 1991)

Authors' code: OSF vxpsb (no license)

Status: code verified, 16 files readable, 6 matches

[286] Code ↔ Paper doi:10.1093/cercor/bhag121 [paper, repository]

Preserved intrinsic neural timescale organization with hierarchical variation in autism spectrum disorder.

Journal: Cerebral cortex (New York, N.Y. : 1991)

Authors' code: shikauchiy/int-hierarchy-analysis (no license)

Status: code verified, 4 files readable, 5 matches

[287] Code ↔ Paper doi:10.1093/cercor/bhag132 [paper, repository]

Spatiotemporal white-matter development across early childhood.

Journal: Cerebral cortex (New York, N.Y. : 1991)

Authors' code: MervSingh/alongtract_fba_wm_dev (no license)

Status: code verified, 67 files readable, 6 matches

[288] Code ↔ Paper doi:10.1093/gbe/evag222 [paper, repository]

Genomic Signatures of Selection Are Enriched in Differentially Expressed Genes in Sticklebacks Adapting to Contrasting Environments.

Journal: Genome biology and evolution

Authors' code: z0on/tag-based_RNAseq (no license)

Status: code verified, 30 files readable

[289] Code ↔ Paper doi:10.1093/neuonc/noag119 [paper, repository]

Single-nucleus profiling of postmortem diffuse midline gliomas identifies mitochondrial biogenesis as a resistance mechanism to imipridone therapy.

Journal: Neuro-oncology

Authors' code: CancerGenomicsLab/DMG_ONC201 (MIT)

Status: code verified, 9 files readable, 2 matches

[290] Code ↔ Paper doi:10.1093/neuonc/noag128 [paper, repository]

Spatially-resolved single-cell imaging of melanoma brain metastases identifies localized immune patterns predictive of immune checkpoint blockade response.

Journal: Neuro-oncology

Authors' code: BodenmillerGroup/steinbock (MIT), StefanosVoglis/Voglis_et_al_2026_Neuro-Oncology (no license)

Status: code verified, 92 files readable, 18 matches

[291] Code ↔ Paper doi:10.1093/sleep/zsag168 [paper, repository]

Deltas' and spindles' cross-area synchronization and ripple subtypes.

Journal: Sleep

Authors' code: genzellab/RGS14 (GPL-3.0), genzellab/RGS14_clusters (no license)

Status: code verified, 194 files readable, 15 matches

[292] doi:10.1096/fj.202504890rr [paper, data]

Purinergic Receptor P2Y2 Regulates Neurogenesis and Functional Recovery Following Spinal Cord Injury in Zebrafish.

Journal: FASEB journal : official publication of the Federation of American Societies for Experimental Biology

Status: data only, 1 dataset cited

[293] doi:10.1096/fj.202603109r [paper, data]

Stressor- and Tissue-Specific Regulation of the Corticotropin-Releasing Factor System Across Epithelial Tissues in Rainbow Trout.

Journal: FASEB journal : official publication of the Federation of American Societies for Experimental Biology

Status: data only, 1 dataset cited

[294] doi:10.1097/md.0000000000050324 [paper, data]

Transcriptomic integration reveals immune heterogeneity in vascular dementia and identifies ELF2 as a candidate therapeutic target.

Journal: Medicine

Status: data only, 1 dataset cited

[295] Code ↔ Paper doi:10.1098/rsob.260120 [paper, repository]

Assessment of adult structural plasticity in Drosophila neurons.

Journal: Open biology

Authors' code: FranTassara/MorphoScope (MIT), Zenodo 17901990 (CC-BY-4.0), doi:10.6084/m9.figshare.c.8627737 (no license)

Status: code verified, 11 files readable, 6 matches

[296] Code ↔ Paper doi:10.1098/rstb.2024.0461 [paper, repository]

Shallow recurrent decoders for neural and behavioural dynamics.

Journal: Philosophical transactions of the Royal Society of London. Series B, Biological sciences

Authors' code: amysrude/neuralSHRED (no license), meganebers/mobileSHRED (no license)

Status: code verified, 27 files readable, 5 matches

[297] doi:10.1098/rstb.2024.0466 [paper, data]

At-home limbic-targeted transcranial electrical stimulation during sleep: a feasibility study in healthy adults.

Journal: Philosophical transactions of the Royal Society of London. Series B, Biological sciences

Status: data only, 1 dataset cited

[298] Code ↔ Paper doi:10.1101/gr.280394.124 [paper, repository]

De novo structural variants in autism spectrum disorder disrupt distal regulatory interactions of neuronal genes.

Journal: Genome research

Authors' code: ketringjoni/SuPreMo (no license)

Status: code verified, 16 files readable, 7 matches

[299] doi:10.1111/acer.70406 [paper, data]

Prenatal Alcohol Exposure Produces Selective Changes in Neuroimmune Gene Expression Across Brain Regions of Adult Mice.

Journal: Alcohol, clinical & experimental research

Status: data only, 1 dataset cited

[300] doi:10.1111/adb.70188 [paper]

Classification of Adolescent Drinking via Behavioral, Biological and Environmental Variables: A Machine Learning Approach With Bias Control.

Journal: Addiction biology

Status: code on request

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