Every paper, by date: page 5

44,644 papers with a page: 24,189 with their authors' code, 4,955 with code on request, 15,495 with data only. The most recent first, 224 a page. Page 5 of 200: 14 August 2026 to 5 August 2026.

Friday, 14 August 2026 (39 papers, 32 on this page)

[897] doi:10.1016/j.isci.2026.117207 [paper]

Physical activity stimulates neurogenesis via sensory neuron activity in postembryonic zebrafish.

Journal: iScience

Status: code on request

[898] Code ↔ Paper doi:10.1016/j.isci.2026.117212 [paper, repository]

Critical neuronal avalanches arise from excitation-inhibition balanced spontaneous activity.

Journal: iScience

Authors' code: adrianponce/ExcInh_Neuronal_Avalanches (no license)

Status: code verified, 8 files readable, 8 matches

[899] Code ↔ Paper doi:10.1016/j.omtn.2026.103063 [paper, repository]

<i>In vivo</i> genome editing of central nervous system SIV reservoirs in ART-suppressed rhesus macaques.

Journal: Molecular therapy. Nucleic acids

Authors' code: DamLabResources/umi-pipeline-nf-HIV (MPL-2.0), DamLabResources/outerspace (no license)

Status: code verified, 93 files readable, 4 matches

[900] Code ↔ Paper doi:10.1038/s41467-026-76593-2 [paper, repository]

Complementary and opponent value signals in the human brain support choosing the best and avoiding the worst.

Journal: Nature communications

Authors' code: Zenodo 20826833 (CC-BY-4.0)

Status: code verified

[901] Code ↔ Paper doi:10.1038/s41467-026-76676-0 [paper, repository]

Determinants of functional burden pleiotropy and gene dosage responses across human traits.

Journal: Nature communications

Authors' code: martineaujeanlouis.github.io/mind-genesparallelcnv (no license), linnarsson-lab/adult-human-brain (BSD-2-Clause), SayehKazem/FunBurd (MIT), Zenodo 17038354 (MIT), funburd.readthedocs.io (no license)

Status: code verified, 114 files readable, 21 matches

[902] doi:10.1038/s41467-026-76725-8 [paper, data]

TogoPhosTAC as a delivery-ready platform for targeted protein dephosphorylation.

Journal: Nature communications

Status: data only, 1 dataset cited

[903] doi:10.1038/s41588-026-02709-5 [paper, data]

PLCG2 downregulation impairs synaptic function and increases Alzheimer's disease hallmarks in neuronal cultures.

Journal: Nature genetics

Status: data only, 3 datasets cited

[904] Code ↔ Paper doi:10.1038/s41592-026-03179-7 [paper, repository]

Voltage imaging of neurons distributed across entire brains of larval zebrafish.

Journal: Nature methods

Authors' code: Zenodo 14920628 (CC-BY-4.0)

Status: code verified, 4 files readable, 1 match

[905] Code ↔ Paper doi:10.1126/sciadv.adz4123 [paper, repository]

Highly attenuated dendritic propagation of isolated synaptic potentials in vivo.

Journal: Science advances

Authors' code: NTCColumbia (no license)

Status: code verified

[906] Code ↔ Paper doi:10.1126/sciadv.aea1037 [paper, repository]

Distinct cortical spatial representations learned along disparate visual pathways.

Journal: Science advances

Authors' code: Zenodo 21088614 (CC-BY-4.0), Zenodo 13502205 (CC-BY-4.0), hasselmonians/lachance_hasselmo_por_rsc (no license), yanbolian/learning-distinct-egocentric-cells (no license)

Status: code verified, 1,395 files readable, 3 matches

[907] Code ↔ Paper doi:10.1126/sciadv.aeb4666 [paper, repository]

Strong connections of locally clustered neurons in the upper-layer cortex underlie schizophrenia-related auditory deviance detection.

Journal: Science advances

Authors' code: Zenodo 19639395 (CC-BY-4.0)

Status: code verified

[908] doi:10.1126/sciadv.aec4153 [paper, data]

An octopamine-glutamate cotransmitting neuron gates aggressive escalation through layered inhibition in <i>Drosophila</i>.

Journal: Science advances

Status: data only, 6 datasets cited

[909] Code ↔ Paper doi:10.1126/sciadv.aeg3223 [paper, repository]

The extreme diversity of retinal amacrine cells has deep evolutionary roots.

Journal: Science advances

Authors' code: shekharlab/AmacrineCells (MIT), Zenodo 20451319 (MIT)

Status: code verified, 52 files readable, 30 matches

[910] Code ↔ Paper doi:10.1162/imag.a.1332 [paper, repository]

Decision processes underlying effort avoidance and their relationship with metacognition.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: smfleming/HMM (MIT), OSF 7egv5 (no license)

Status: code verified, 59 files readable, 11 matches

[911] Code ↔ Paper doi:10.1162/imag.a.1337 [paper, repository]

Data quality biases normative models derived from fetal brain MRI.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: fetpype/fetpype (MIT), fetpype/normative_modeling_data_quality (no license), Zenodo 15696638 (CC-BY-4.0)

Status: code verified, 42 files readable, 8 matches

[912] Code ↔ Paper doi:10.1186/s44477-026-00045-w [paper, repository]

Proteomic analysis of human chronic traumatic encephalopathy brain implicates proteasome and ribosome dysfunction in disease severity.

Journal: Molecular neurodegeneration advances

Authors' code: BU-Neuromics/cte-proteomics-2026 (no license)

Status: code verified, 10 files readable, 9 matches

[913] Code ↔ Paper doi:10.1371/journal.pbio.3003931 [paper, repository]

A single-cell transcriptomic atlas reveals the emergence of medusa-specific cell states in the scyphozoan Aurelia coerulea.

Journal: PLoS biology

Authors' code: technau/AureliaAtlas (no license), Zenodo 21132158 (CC-BY-4.0)

Status: code verified, 14 files readable, 16 matches

[914] doi:10.1371/journal.pone.0355857 [paper]

Environmental enrichment attenuates chronic stress-induced disruptions in the gut microbiota, intestinal barrier, and brain.

Journal: PloS one

Status: data only

[915] doi:10.2147/jmdh.s605039 [paper, data]

NeuroMimicNet: A Multimodal Neuromorphic Framework for Early Screening and Cognitive Pattern Recognition in Children with Autism.

Journal: Journal of multidisciplinary healthcare

Status: data only, 1 dataset cited

[916] Code ↔ Paper doi:10.3389/fncom.2026.1876230 [paper, repository]

Linking spatially distributed neuronal activation overlap to the limits of perceptual discrimination in rodent primary somatosensory cortex.

Journal: Frontiers in computational neuroscience

Authors' code: msj220001/Ssctx-column-model-4-electrode-ICMS (no license)

Status: code verified, 746 files readable

[917] doi:10.3389/fonc.2026.1806663 [paper, data]

A denoising autoencoder-enhanced ResNet 50 framework for explainable brain tumor classification using MRI.

Journal: Frontiers in oncology

Status: data only, 1 dataset cited

[918] Code ↔ Paper doi:10.3389/fradi.2026.1901958 [paper, repository]

Automated opportunistic screening for low bone mineral density using routine CT brain imaging.

Journal: Frontiers in radiology

Authors' code: AH-AI-in-Radiology/CTB_Osteoporosis_Screening (MIT)

Status: code verified, 6 files readable, 1 match

[919] Code ↔ Paper doi:10.3390/bioengineering13080924 [paper, repository]

Deep Learning-Based Temporal Gait Analysis Using a Smartphone IMU in Older Adults with and Without Non-Specific Low Back Pain.

Journal: Bioengineering (Basel, Switzerland)

Authors' code: MS-AI-OVGU/gait_ml (other)

Status: code verified, 10 files readable, 4 matches

[920] doi:10.3390/biom16081187 [paper, data]

Genetic Diversity and Runs of Homozygosity in Three Masu Salmon (<i>Oncorhynchus masou</i>) Populations Based on Whole-Genome Resequencing Data.

Journal: Biomolecules

Status: data only, 1 dataset cited

[921] doi:10.3390/biomedicines14081829 [paper]

Transvenous Embolisation-Based Strategies for Brain Arteriovenous Malformations: Systematic Review and Meta-Analysis.

Journal: Biomedicines

Status: code on request

[922] doi:10.3390/cancers18162616 [paper, data]

Decitabine Reprograms Temozolomide-Resistant Glioblastoma Through Epigenetic Reactivation and Mesenchymal Attenuation: A Multi-Omics Study.

Journal: Cancers

Status: code on request, 1 dataset cited

[923] Code ↔ Paper doi:10.3390/ijms27167275 [paper, repository]

Integrative Multi-Omics Analysis of Multiple Sclerosis Reveals Cell-Type-Specific Regulatory Landscapes and Discordant Methylation-Expression Coupling.

Journal: International journal of molecular sciences

Authors' code: alperbulbul1/MS_Omics_Data_Analysis (MIT)

Status: code verified, 104 files readable, 40 matches

[924] Code ↔ Paper doi:10.3390/jimaging12080384 [paper, repository]

Understanding Trade-Offs in Continuous Neural Representations for Diffeomorphic Image Registration: A Comparative Study of Implicit Neural Representations and Neural Ordinary Differential Equations.

Journal: Journal of imaging

Authors' code: yifannnwu/NODEO-DIR (no license), MIAGroupUT/IDIR (MIT), BrainImageAnalysis/INRsRegExp (MIT), mhglddmm/INRvsNODE_LDDMM (GPL-3.0)

Status: code verified, 30 files readable

[925] Code ↔ Paper doi:10.64898/2026.08.12.26350419 [paper, repository]

Volitional deep brain stimulation following brain-computer interface training for Parkinson’s disease

Journal: medRxiv (preprint)

Authors' code: tepzhang/volitional_DBS (no license)

Status: code verified, 3 files readable, 2 matches

[926] Code ↔ Paper doi:10.64898/2026.08.13.26359403 [paper, repository]

NeuroMorph: A Unified Morphological Reference Space for Cross-Disease Brain Profiling

Journal: medRxiv (preprint)

Authors' code: rockNroll87q/NeuroMorph (no license)

Status: dead link

[927] Code ↔ Paper doi:10.7554/elife.93640 [paper, repository]

Sibling chimerism among microglia in marmosets.

Journal: eLife

Authors' code: broadinstitute/Drop-seq (MIT), lh3/bwa (GPL-3.0), satijalab/seurat (other), IanevskiAleksandr/sc-type (GPL-3.0), satijalab/sctransform (GPL-3.0), PMBio/peer (GPL-2.0)

Status: code verified, 2,573 files readable, 6 matches

[928] Code ↔ Paper doi:10.7759/cureus.114519 [paper, repository]

Mapping Half a Century of Global Brain Abscess Research: A Bibliometric Analysis of Output, Themes, and Collaboration (1975-2025).

Journal: Cureus

Authors' code: OSF myhp2 (no license)

Status: code verified, 11 files readable, 15 matches

Thursday, 13 August 2026 (30 papers)

[929] Code ↔ Paper doi:10.1002/2211-5463.70322 [paper, repository]

Identification and characterisation of calcitonin receptor isoforms expressed in glioblastoma derived glioma stem and U-87 MG cells.

Journal: FEBS open bio

Authors' code: shwetajoshi-15/discoAnt (no license)

Status: code verified, 6 files readable

[930] Code ↔ Paper doi:10.1002/gps3.70042 [paper, repository]

Effects of single-session transcranial direct current stimulation on response inhibition in stop-signal task performance: A meta-analysis and systematic review.

Journal: General psychiatry

Authors' code: OSF bftrc (no license)

Status: code verified, 1 file readable, 3 matches

[931] doi:10.1007/s11571-026-10526-z [paper]

A task-aligned multimodal machine learning framework for studying working memory dysfunction in Parkinson's disease.

Journal: Cognitive neurodynamics

Status: code on request

[932] Code ↔ Paper doi:10.1007/s12035-026-06122-1 [paper, repository]

Alternative Polyadenylation in the Brain is Modulated by Chronic Ethanol Exposure in a Sex- and Cell Type-Specific Manner.

Journal: Molecular neurobiology

Authors' code: alleninstitute/abc_atlas_access (BSD-2-Clause)

Status: code verified, 24 files readable

[933] doi:10.1016/j.isci.2026.116842 [paper]

Intrinsic electrical diversity of PV<sup>+</sup> retinal ganglion cells.

Journal: iScience

Status: code on request

[934] Code ↔ Paper doi:10.1016/j.isci.2026.117147 [paper, repository]

Penetrating potential evaluation of cyclotriphosphazenes target blood-brain barrier via computational toxicology methods.

Journal: iScience

Authors' code: Valdes-Tresanco-MS/gmx_MMPBSA (GPL-3.0)

Status: code verified, 124 files readable, 2 matches

[935] Code ↔ Paper doi:10.1016/j.isci.2026.117173 [paper, repository]

Frequency-filtered attention for cross-species fMRI time series prediction under small-sample learning.

Journal: iScience

Authors' code: Brain-Cog-Lab/FFAformer (no license), Zenodo 21543542 (CC-BY-4.0), annaoliver/ffaformer (no license)

Status: code verified, 81 files readable, 2 matches

[936] Code ↔ Paper doi:10.1016/j.isci.2026.117180 [paper, repository]

Developmental changes in similarity between neural representations of mental arithmetic and artificial neural networks.

Journal: iScience

Authors' code: Zenodo 15395718 (CC-BY-4.0)

Status: code verified, 21 files readable, 3 matches

[937] doi:10.1016/j.jbc.2026.113447 [paper, data]

TIMELESS promotes glioma stemness and malignancy through JAK-STAT3 pathway.

Journal: The Journal of biological chemistry

Status: data only, 1 dataset cited

[938] Code ↔ Paper doi:10.1016/j.ncrna.2026.06.004 [paper, repository]

LncPNdeep: A long non-coding RNA classifier based on large language model with peptide and nucleotide embedding.

Journal: Non-coding RNA research

Authors' code: yatoka233/LncPNdeep (no license)

Status: code verified, 21 files readable, 4 matches

[939] Code ↔ Paper doi:10.1038/s12276-026-01794-0 [paper, repository]

Extinction-restraint intervention eradicates fear memory encoded in BLA engram cells via D2 receptor-mediated dopaminergic modulation from locus coeruleus.

Journal: Experimental & molecular medicine

Authors' code: BehavioralLAB/Fiberphotometry (no license)

Status: code verified, 1 file readable

[940] Code ↔ Paper doi:10.1038/s41467-026-75745-8 [paper, repository]

A language network in the individualized functional connectomes of 1199 human brains doing arbitrary tasks.

Journal: Nature communications

Authors' code: coryshain/parcellate (no license), coryshain/langlocFC (no license), Zenodo 20520281 (CC-BY-4.0)

Status: code verified, 64 files readable, 10 matches

[941] Code ↔ Paper doi:10.1038/s41467-026-76098-y [paper, repository]

A single computational objective can produce specialization of streams in visual cortex.

Journal: Nature communications

Authors' code: dawnfinzi/spacestream (Apache-2.0), neuroailab/TDANN (no license), Zenodo 20753397 (Apache-2.0)

Status: code verified, 239 files readable, 16 matches

[942] Code ↔ Paper doi:10.1038/s41467-026-76812-w [paper, repository]

Assessing molecular, cellular and transcriptomic bases of laminar perfusion and cytoarchitecture coupling in the human cortex.

Journal: Nature communications

Authors' code: FanhuaGuo/ASL-Bigbrain-CCSI (MIT), Zenodo 21363179 (MIT)

Status: code verified, 70 files readable, 15 matches

[943] Code ↔ Paper doi:10.1093/braincomms/fcag309 [paper, repository]

Neurovascular effects of tadalafil in patients with cerebral small vessel disease: ETLAS-2 substudy.

Journal: Brain communications

Authors' code: Zenodo 19233779 (CC-BY-4.0)

Status: code verified, 6 files readable, 6 matches

[944] Code ↔ Paper doi:10.1117/1.nph.13.s3.s32602 [paper, repository]

Cedalion tutorial: a Python-based framework for comprehensive analysis of multimodal fNIRS and DOT from the lab to the everyday world.

Journal: Neurophotonics

Authors' code: codeocean:5432660 (no license), cedalion.tools (no license)

Status: code found, still to be checked

[945] Code ↔ Paper doi:10.1371/journal.pone.0345854 [paper, repository]

Shedding light on neural learning to rank models for anticancer drug prioritization.

Journal: PloS one

Authors' code: Sarmeili/NeuralDrugRanker (no license)

Status: code verified, 49 files readable, 6 matches

[946] Code ↔ Paper doi:10.1371/journal.pone.0355739 [paper, repository]

The effects of blast-induced traumatic brain injury on brain cellular mechanics and differentiation.

Journal: PloS one

Authors' code: kaggle.com/datasets/masudnabila (no license)

Status: dead link

[947] Code ↔ Paper doi:10.1523/eneuro.0407-25.2026 [paper, repository]

Connectome-Guided Personalization of Optimal TDCS Intervention Selection in Alzheimer's Disease: A Modeling Study.

Journal: eNeuro

Authors' code: CornelisStam/BrainWave (no license)

Status: empty repository, 1 file readable

[948] Code ↔ Paper doi:10.3389/fgene.2026.1799530 [paper, repository]

Sex-dependent prediction of autism.

Journal: Frontiers in genetics

Authors' code: Catriona-Miller/autism_ml (no license)

Status: code verified, 4 files readable, 1 match

[949] doi:10.3389/fmicb.2026.1850738 [paper, data]

Correlation study of polysomnographic parameters, serological markers, and gut microbiota in patients with short-sleep insomnia: a real-world study.

Journal: Frontiers in microbiology

Status: data only, 1 dataset cited

[950] Code ↔ Paper doi:10.3389/fnagi.2026.1839445 [paper, repository]

The molecular mechanisms of Guizhi Fuling Pills in ameliorating Alzheimer's disease-like cognitive impairment: insights from transcriptomics, metabolomics, and gut microbiome.

Journal: Frontiers in aging neuroscience

Authors' code: OpenGene/fastp (MIT), tanghaibao/GOatools (BSD-2-Clause)

Status: code verified, 204 files readable, 2 matches

[951] Code ↔ Paper doi:10.3389/fnins.2026.1892212 [paper, repository]

Mutual information minimization enhances noise robustness and induces fault containment in functionally differentiated recurrent neural networks.

Journal: Frontiers in neuroscience

Authors' code: yymgch/mirnn-robust (MIT), Zenodo 21287687 (MIT)

Status: code verified, 30 files readable, 8 matches

[952] Code ↔ Paper doi:10.3390/bioengineering13080917 [paper, repository]

Pilot Study Employing a Machine Learning Approach as a Potential Method for Predicting Parkinson's Disease Using Voice as a Digital Biomarker and the SHAP Approach for Feature Engineering.

Journal: Bioengineering (Basel, Switzerland)

Authors' code: mehdi1366-com (no license)

Status: code verified

[953] Code ↔ Paper doi:10.3390/brainsci16080856 [paper, repository]

Alzheimer's Disease Detection Using Combined EEG Source Connectivity and Microstate Features.

Journal: Brain sciences

Authors' code: 7788890/SMMS-AD-Code (no license)

Status: code verified, 12 files readable, 5 matches

[954] doi:10.3390/ijms27167238 [paper, data]

<i>RFX3</i> Pathogenic Variants as a Rare Cause of Infantile Epileptic Spasms Syndrome.

Journal: International journal of molecular sciences

Status: data only, 1 dataset cited

[955] doi:10.3390/ijms27167240 [paper, data]

1-Piperidine Propionic Acid Inhibits PAR2/SerpinB3 Signaling and Reduces Glioblastoma Tumor Aggressiveness.

Journal: International journal of molecular sciences

Status: data only, 1 dataset cited

[956] Code ↔ Paper doi:10.3390/s26165121 [paper, repository]

Electrophysiological Signatures of Sarcopenia: A Systematic Review of sEMG Features, Fatigue Indices and AI-Based Classifiers.

Journal: Sensors (Basel, Switzerland)

Authors' code: c4macho/LIPS_ARTICULOS (no license)

Status: code verified, 3 files readable, 4 matches

[957] doi:10.64898/2026.08.12.26360241 [paper, data]

Diffusion kurtosis imaging (gen)omics unravels mechanisms of cerebral small vessel disease

Journal: medRxiv (preprint)

Status: data only, 1 dataset cited

[958] doi:10.7554/elife.105386 [paper, data]

Parkinson's disease-associated <i>PINK1</i> loss disrupts ensheathing glia and causes dopaminergic neuron synapse loss.

Journal: eLife

Status: code on request, 1 dataset cited

Wednesday, 12 August 2026 (34 papers)

[959] doi:10.1002/advs.77111 [paper, data]

Endothelial miR-15a/16-1 Regulation of SYNE1 Mediates Structural and Functional Recovery after Traumatic Brain Injury.

Journal: Advanced science (Weinheim, Baden-Wurttemberg, Germany)

Status: data only, 1 dataset cited

[960] Code ↔ Paper doi:10.1007/s12311-026-02068-1 [paper, repository]

Generation and Validation of an Acan-Cre Mouse Line to Selectively Label Class-B Excitatory Neurons of the Cerebellar Nuclei.

Journal: Cerebellum (London, England)

Authors' code: kebschulllab/Acan-Cre-cerebellar-nucleiBARseq3 (no license)

Status: dead link

[961] doi:10.1016/j.celrep.2026.117827 [paper]

Pleiotrophin regulates presynaptic assembly and function through heparan sulfate-dependent binding to neurexin1.

Journal: Cell reports

Status: code on request

[962] Code ↔ Paper doi:10.1016/j.celrep.2026.117830 [paper, repository]

Opposite network patterns of integration-segregation in psychedelic and sedated states of consciousness.

Journal: Cell reports

Authors' code: Zenodo 14029241 (CC-BY-4.0), biorender.com (no license)

Status: code verified, 2 files readable

[963] Code ↔ Paper doi:10.1016/j.cub.2026.07.041 [paper, repository]

Notch-mediated lateral inhibition is shaped by morphological differences to reinforce bias toward signal-sending or -receiving roles.

Journal: Current biology : CB

Authors' code: crou607/neurogenesis_analysis (AGPL-3.0), Zenodo 20612238 (apgl-v3)

Status: code verified, 56 files readable, 9 matches

[964] Code ↔ Paper doi:10.1016/j.isci.2026.116517 [paper, repository]

Spatially resolved transcriptomics in human brain metastases identifies macrophage-tumor interactions associated with survival.

Journal: iScience

Authors' code: huayc09/SeuratExtend (GPL-3.0)

Status: code verified, 60 files readable, 4 matches

[965] doi:10.1016/j.isci.2026.116866 [paper]

Astrocytes mobilize a broader repertoire of lysosomal repair mechanisms than neurons.

Journal: iScience

Status: code on request

[966] doi:10.1038/s41467-026-74906-z [paper, data]

Youth-associated protein TIMP2 regulates microglial state and function in healthy and aged mice.

Journal: Nature communications

Status: data only, 1 dataset cited

[967] doi:10.1038/s41467-026-76112-3 [paper, data]

Photostimulation improves maturation of human photoreceptors.

Journal: Nature communications

Status: data only, 1 dataset cited

[968] Code ↔ Paper doi:10.1038/s41467-026-76574-5 [paper, repository]

Prefrontal-raphe-habenular circuit drives fear memory recall and updating.

Journal: Nature communications

Authors' code: nikolaskaralis (no license), Zenodo 21026721 (CC-BY-4.0)

Status: code verified, 2 files readable, 1 match

[969] doi:10.1038/s41467-026-76683-1 [paper, data]

Inflammatory neuropathy in mouse and primate models of colorectal cancer.

Journal: Nature communications

Status: data only, 3 datasets cited

[970] Code ↔ Paper doi:10.1038/s41586-026-10907-8 [paper, repository]

Procognitive restoration of PV neuron plasticity in neurodevelopmental disorders.

Journal: Nature

Authors' code: Zenodo 18496478 (CC-BY-4.0)

Status: code verified, 1 file readable, 3 matches

[971] doi:10.1073/pnas.2609141123 [paper, data]

Odor tracking in flying <i>Drosophila</i> requires visual reafference and compass neurons.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 1 dataset cited

[972] Code ↔ Paper doi:10.1093/nc/niag043 [paper, repository]

Demographics-robust spontaneous eye blinking slowing in patients with severe acquired brain injury.

Journal: Neuroscience of consciousness

Authors' code: Leonardo-Corsi/blink-waveforms-sabi (MIT)

Status: code verified, 15 files readable, 6 matches

[973] doi:10.1117/1.jbo.31.8.086005 [paper]

Label-free wide-field imaging of brain tumors using near-infrared endogenous fluorescence and reflectance normalization.

Journal: Journal of biomedical optics

Status: code on request

[974] doi:10.1117/1.jbo.31.8.086006 [paper, data]

Noise-aware dynamic convolution for improved generalizability of retinal disease diagnosis using optical coherence tomography images.

Journal: Journal of biomedical optics

Status: data only, 5 datasets cited

[975] Code ↔ Paper doi:10.1126/sciadv.aec5080 [paper, repository]

Label-free biochemical imaging and time point analysis of neural organoids via deep learning-enhanced Raman microspectroscopy.

Journal: Science advances

Authors' code: Zenodo 18661874 (CC-BY-4.0), barahona-research-group/dl-raman (Apache-2.0)

Status: code verified, 9 files readable, 7 matches

[976] Code ↔ Paper doi:10.1126/sciadv.aee2305 [paper, repository]

Prediction of mild cognitive impairment progression using time-sensitive multimodal biomarkers.

Journal: Science advances

Authors' code: Zenodo 19897907 (MIT), openpreventad.loris.ca (no license), mcgill.ca/bic/neuroinformatics (no license), ggsegverse/ggseg (other), Zenodo 19411014 (CC-BY-4.0), jogaru1818/progression_to_mci (no license), villeneuvelab/vlpp (MIT)

Status: code verified, 132 files readable, 11 matches

[977] Code ↔ Paper doi:10.1126/sciadv.aee9298 [paper, repository]

Synaptic zinc plasticity shapes adaptive and maladaptive cortical plasticity following cochlear injury.

Journal: Science advances

Authors' code: Zenodo 8018820 (CC-BY-4.0)

Status: code verified, 111 files readable, 5 matches

[978] Code ↔ Paper doi:10.1126/sciadv.aef9926 [paper, repository]

aDISCO: A clearing method to enable 3D microscopy of large archival paraffin-embedded human tissue blocks.

Journal: Science advances

Authors' code: ptrrupprecht/cell_detection (GPL-3.0), Zenodo 20443377 (GPL-3.0)

Status: code verified, 6 files readable, 3 matches

[979] Code ↔ Paper doi:10.1177/13872877261477016 [paper, repository]

Progression from mild cognitive impairment to dementia in Alzheimer's disease: Whole cortex voxelwise functional connectivity analysis with multivariate distance matrix regression.

Journal: Journal of Alzheimer's disease : JAD

Authors' code: lkf-ki/mdmr-voxel-wise-mci-conversion (GPL-3.0)

Status: code verified, 4 files readable

[980] Code ↔ Paper doi:10.1371/journal.pone.0353990 [paper, repository]

Positive mood enhances accessibility of unrelated concepts in the first language but not in the foreign language.

Journal: PloS one

Authors' code: OSF nq4vz (no license)

Status: code verified, 9 files readable, 7 matches

[981] Code ↔ Paper doi:10.1523/jneurosci.2001-25.2026 [paper, repository]

Dynamics of Dentate Gyrus Place Cells and Dentate Spikes during Spatial and Nonspatial Changes in Environments.

Journal: The Journal of neuroscience : the official journal of the Society for Neuroscience

Authors' code: Julie-Fabre/bombcell (GPL-3.0), ColginLab/Demetrovich_Colgin_2026 (no license), ColginLab/ColginLabCode (no license)

Status: code verified, 1,516 files readable, 19 matches

[982] doi:10.3389/fninf.2026.1854811 [paper, data]

The role of inhibition in modeling decision making with spiking neural networks.

Journal: Frontiers in neuroinformatics

Status: data only, 1 dataset cited

[983] doi:10.3389/fnins.2026.1908548 [paper, data]

Multimodal DeepSurv model with SHAP-based interpretation for predicting local failure in patients with brain metastases undergoing hypofractionated stereotactic radiotherapy.

Journal: Frontiers in neuroscience

Status: data only, 1 dataset cited

[984] doi:10.3389/fnins.2026.1929767 [paper, data]

Tracing fucosylation and astrocyte-associated pathogenic pattern in major depressive disorder: evidence from machine learning-based multi-omics and clinical validation.

Journal: Frontiers in neuroscience

Status: data only, 1 dataset cited

[985] doi:10.3389/fpsyt.2026.1828806 [paper, data]

Integrative multi-omics and machine learning analysis identifies candidate biomarkers associated with mitochondrial quality control in major depressive disorder.

Journal: Frontiers in psychiatry

Status: data only, 2 datasets cited

[986] Code ↔ Paper doi:10.3389/ftox.2026.1816944 [paper, repository]

Neurodevelopmental outcomes relevant to autism in juvenile mice exposed to PCB 11 in the maternal diet throughout gestation and lactation.

Journal: Frontiers in toxicology

Authors' code: Zenodo 19716216 (CC-BY-4.0)

Status: code verified, 4 files readable

[987] doi:10.3390/biology15161373 [paper, data]

Elevational Variation in Organ Size and Brain-Viscera Energetic Trade-Offs in the Minshan Toad (<i>Bufo minshanicus</i>).

Journal: Biology

Status: data only, 1 dataset cited

[988] Code ↔ Paper doi:10.3390/bios16080437 [paper, repository]

Deep Learning for Ear-EEG-Based Brain-Computer Interface: A Systematic Comparison and Design Insights.

Journal: Biosensors

Authors' code: toiro2000/Ear-EEG-DL-Benchmark (MIT), Zenodo 21716287 (MIT)

Status: code verified, 14 files readable, 9 matches

[989] doi:10.3390/s26165109 [paper]

Feature Selection Analysis and Robustness to Missing Data for Sensor-Based Prognostic Modeling of Alzheimer's Disease Progression.

Journal: Sensors (Basel, Switzerland)

Status: code on request

[990] Code ↔ Paper doi:10.3758/s13428-026-03134-6 [paper, repository]

Contextualized sensorimotor norms: Multi-dimensional measures of sensorimotor strength for ambiguous English words, in context.

Journal: Behavior research methods

Authors' code: seantrott/cs_norms (no license)

Status: code verified, 4 files readable, 6 matches

[991] doi:10.64898/2026.08.11.26359568 [paper, data]

<i>TMEM106B</i> haplotypes show distinct associations with tau and TDP-43 pathologies in the aging brain

Journal: medRxiv (preprint)

Status: data only, 1 dataset cited

[992] Code ↔ Paper doi:10.7554/elife.103956 [paper, repository]

Human brain-wide activation of sleep rhythms.

Journal: eLife

Authors' code: liu_lab/eeg-fmri-sleep (MIT)

Status: code verified, 5 files readable, 2 matches

Tuesday, 11 August 2026 (29 papers)

[993] doi:10.1002/advs.77085 [paper, data]

Targeting CXCR2 in Nociceptive Sensory Neurons Offers Novel Therapeutic Potentials for Postoperative Pain.

Journal: Advanced science (Weinheim, Baden-Wurttemberg, Germany)

Status: data only, 1 dataset cited

[994] Code ↔ Paper doi:10.1007/s42761-026-00394-5 [paper, repository]

Amygdalar Pattern Similarity to Negative and Neutral Images, Ratings of the Images, and PET-Measured Amyloid and Tau Levels in Older Adults Without Dementia.

Journal: Affective science

Authors' code: OSF qswk6 (no license)

Status: code verified, 4 files readable, 3 matches

[995] Code ↔ Paper doi:10.1016/j.ebiom.2026.106418 [paper, repository]

Corticostriatal glutamate mechanisms underlying beta synchrony and motor deficits via striatal NMDA receptors in Parkinson's disease.

Journal: EBioMedicine

Authors' code: ziruiwang0836/striatum-microcircuit (no license)

Status: code verified, 82 files readable

[996] Code ↔ Paper doi:10.1016/j.eclinm.2026.104143 [paper, repository]

Intensive versus standard blood pressure control and overall brain small vessel disease burden: a post-hoc analysis of the SPRINT randomized clinical trial.

Journal: EClinicalMedicine

Authors' code: UTHSCSA-NAL/SPRINT_SVD (no license)

Status: code verified, 2 files readable, 7 matches

[997] Code ↔ Paper doi:10.1016/j.isci.2026.116021 [paper, repository]

Periostin drives psoriasis progression through the stimulation of cutaneous nerve fibers.

Journal: iScience

Authors' code: immunogenomics/harmony (no license)

Status: code verified, 32 files readable

[998] doi:10.1016/j.isci.2026.116992 [paper]

Exemestane increases the number and improves the morphology of cultured pre-antral follicles from transmasculine ovarian cortical tissue.

Journal: iScience

Status: code on request

[999] doi:10.1016/j.isci.2026.117143 [paper, data]

Molecular heterogeneity and differential metabolic signatures in thymic adipocytes.

Journal: iScience

Status: code on request, 1 dataset cited

[1000] doi:10.1038/s41467-026-75877-x [paper, data]

Structure of NHE6 and its lipid-mediated interactions regulating endosomal pH.

Journal: Nature communications

Status: data only, 2 datasets cited

[1001] Code ↔ Paper doi:10.1038/s41467-026-76232-w [paper, repository]

Th17 effector cytokines induce shared and distinct microglial and endothelial cell responses in a mouse model for post-streptococcal encephalitis.

Journal: Nature communications

Authors' code: AgalliuLab/s-pyogenes-scRNAseq (no license)

Status: code verified, 5 files readable, 14 matches

[1002] Code ↔ Paper doi:10.1038/s41467-026-76320-x [paper, repository]

Intrinsic and non-cell-autonomous roles for the neurodevelopmental syndrome-linked transcription factor UNC-3/EBF.

Journal: Nature communications

Authors' code: KratsiosLab (no license), Zenodo 21345127 (CC-BY-4.0), kratsioslab/smith_etal_2026 (no license)

Status: code verified

[1003] doi:10.1038/s41467-026-76368-9 [paper, data]

Integrative structural analysis of human endosomal NHE6 reveals a lipid-associated gate and disordered C-terminus.

Journal: Nature communications

Status: data only, 5 datasets cited

[1004] Code ↔ Paper doi:10.1038/s41467-026-76581-6 [paper, repository]

Thalamocortical bursts encode reward contingencies and drive associative learning.

Journal: Nature communications

Authors' code: bothlab/syntalos (no license), grohlab/thalamocortical-bursts-encode-reward-contingencies-and-drive-associative-learning (no license), doi:10.5061/dryad.hdr7sqvt1 (no license), Zenodo 21249852 (CC-BY-4.0), alleninstitute/ecephys_spike_sorting (BSD-2-Clause), Zenodo 13369686 (CC-BY-4.0), Zenodo 21429439 (MIT), grohlab/a-tactile-discrimination-task-to-study-neuronal-dynamics-in-freely-moving-mice (no license)

Status: code verified, 1,148 files readable, 11 matches

[1005] Code ↔ Paper doi:10.1038/s41746-026-02946-2 [paper, repository]

Fully-automated sleep staging for Parkinson's disease and isolated REM sleep behavior disorder.

Journal: NPJ digital medicine

Authors' code: jesperstroem/U-Sleep-for-RBD-PD (no license)

Status: code verified, 48 files readable, 4 matches

[1006] doi:10.1039/d6ra04733e [paper, data]

V600E biases the BRAF kinase domain toward an activation-compatible conformational ensemble through long-range dynamic rewiring.

Journal: RSC advances

Status: data only, 1 dataset cited

[1007] Code ↔ Paper doi:10.1093/braincomms/fcag303 [paper, repository]

Sleep spindles are linked to white matter connectivity differentially in older adults with and without cognitive impairment.

Journal: Brain communications

Authors' code: OSF uy7jk (no license)

Status: code verified, 1 file readable, 2 matches

[1008] doi:10.1371/journal.pone.0342165 [paper, data]

Analyzing an organism's sensors using Maximum Entropy (MaxEnt) models with bias, variance, and confusion matrices.

Journal: PloS one

Status: data only, 1 dataset cited

[1009] Code ↔ Paper doi:10.1371/journal.pone.0355165 [paper, repository]

Pupillary dynamics during hands-off L2 driving and transitions of control under high cognitive load.

Journal: PloS one

Authors' code: OSF vmxj3 (no license)

Status: code verified, 3 files readable, 9 matches

[1010] doi:10.1523/eneuro.0199-25.2026 [paper]

Zebra Finch Introductory Notes Become Song-Like But Have Different Timing and Acoustic Correlations with the Song That Follows.

Journal: eNeuro

Status: code on request

[1011] Code ↔ Paper doi:10.2147/dddt.s624727 [paper, repository]

Lower Risk of Incident Dementia with SGLT2 Inhibitor Versus DPP-4 Inhibitor Initiation in Patients with Type 2 Diabetes and Prior Traumatic Brain Injury: A Retrospective Cohort Study.

Journal: Drug design, development and therapy

Authors' code: dovepress.com/article/supplementary_file (no license)

Status: code verified

[1012] doi:10.3389/fimmu.2026.1700109 [paper]

Integrated machine learning and transcriptomics reveal immune infiltration-related orthologous transcription genes in cerebral ischemic injury.

Journal: Frontiers in immunology

Status: data only

[1013] doi:10.3389/fnagi.2026.1788991 [paper, data]

Plasma multi-miRNA models classify Alzheimer's, Parkinson's, and Lewy body dementia.

Journal: Frontiers in aging neuroscience

Status: data only, 1 dataset cited

[1014] Code ↔ Paper doi:10.3389/fpsyt.2026.1855963 [paper, repository]

Transient entanglement in minimal open XXZ spin chains: a toy-model analogy for microtubule-inspired quantum biology.

Journal: Frontiers in psychiatry

Authors' code: figshare 31987449 (CC-BY-4.0), figshare 31988418 (CC-BY-4.0), figshare 31989399 (CC-BY-4.0), figshare 31998522 (CC-BY-4.0)

Status: empty repository

[1015] Code ↔ Paper doi:10.3390/ani16162494 [paper, repository]

Categorical Representation of Numerosity in the Pigeon Entopallium: Coding Format and Temporal Dynamics.

Journal: Animals : an open access journal from MDPI

Authors' code: BrainSystemsLab/Data_and_Code_for_ENTO (no license)

Status: code verified, 11 files readable, 1 match

[1016] doi:10.3390/antib15040073 [paper, data]

Acetylcholine Receptor Antibody Positivity, RNST Abnormality, and Thymoma Predict Generalization in Ocular Myasthenia Gravis: A South Korean Cohort Study.

Journal: Antibodies (Basel, Switzerland)

Status: data only, 1 dataset cited

[1017] doi:10.3390/cells15161445 [paper, data]

Utility of the Recombinase Driver CX3CR1-ERT2 Rat Strain in Nicotine Self-Administration.

Journal: Cells

Status: data only, 1 dataset cited

[1018] Code ↔ Paper doi:10.34133/csbj.0184 [paper, repository]

Cross-Species Multitask Learning with Molecular and ADME Descriptors for Liver Microsomal Metabolic Stability.

Journal: Computational and structural biotechnology journal

Authors' code: bmil-jnu/cross-species_metabolic_stability_prediction (no license)

Status: code verified, 26 files readable, 19 matches

[1019] doi:10.5812/ijem-168867 [paper, data]

Large-Scale Brain Network Connectivity Mediates the Association Between Metabolic Risk Factors and Cognition: An fMRI Study of the Human Connectome Project.

Journal: International journal of endocrinology and metabolism

Status: data only, 1 dataset cited

[1020] Code ↔ Paper doi:10.7554/elife.107661 [paper, repository]

In vivo mapping of striatal neurodegeneration in Huntington's disease with Soma and Neurite Density Imaging.

Journal: eLife

Authors' code: palombom/SANDI-Matlab-Toolbox-Latest-Release (BSD-2-Clause)

Status: code verified, 90 files readable, 6 matches

[1021] doi:10.7554/elife.109083 [paper, data]

Spine nanostructure profiling of cultured neurons from mouse models reveals a schizophrenia-linked role for Ecrg4.

Journal: eLife

Status: data only, 1 dataset cited

Monday, 10 August 2026 (23 papers)

[1022] doi:10.1002/ame2.70276 [paper, data]

The diagnostic value of the circadian rhythm gene KLF10 in anxiety-depressive disorders and its neuroimmune regulatory mechanisms.

Journal: Animal models and experimental medicine

Status: data only, 1 dataset cited

[1023] doi:10.1007/s10549-026-08050-z [paper]

Association of tumor Schwann cells with epithelial-mesenchymal transition and immune-suppressive microenvironment in triple-negative breast cancer.

Journal: Breast cancer research and treatment

Status: code on request

[1024] Code ↔ Paper doi:10.1016/j.isci.2026.116900 [paper, repository]

Dog brain representations of human facial expressions: Encoding happiness and differentiating specific negative expressions.

Journal: iScience

Authors' code: rhernandez00/dog_brain_toolkit (no license)

Status: code verified, 137 files readable, 5 matches

[1025] Code ↔ Paper doi:10.1016/j.isci.2026.116936 [paper, repository]

Beyond neural oscillations: Stress-related aperiodic activity and aperiodic-oscillatory spectral covariation.

Journal: iScience

Authors' code: alvinleekarfye/alvin-aperiodic-stressinduction-analysis-2026 (MIT), Zenodo 21207822 (MIT), craddm/eegutils (other)

Status: code verified, 160 files readable, 3 matches

[1026] Code ↔ Paper doi:10.1016/j.isci.2026.117038 [paper, repository]

Multi-region brain transcriptomes uncover two subtypes of aging individuals with differences in Alzheimer risk and the impact of &lt;i&gt;APOEε4&lt;/i&gt;.

Journal: iScience

Authors' code: anniejlee/multi-region-transcriptomes-aging-subtypes (no license)

Status: code verified, 3 files readable, 2 matches

[1027] Code ↔ Paper doi:10.1016/j.isci.2026.117068 [paper, repository]

Directed graph neural networks with partial directed coherence for seizure prediction and epileptogenic network characterization.

Journal: iScience

Authors' code: chenshuozhao/PDC-DiGCN-Seizure-Prediction (no license)

Status: code verified, 14 files readable, 13 matches

[1028] doi:10.1016/j.isci.2026.117110 [paper]

Orbitofrontal cortex contributes to context-dependent timing under ambiguity.

Journal: iScience

Status: code on request

[1029] doi:10.1016/j.isci.2026.117125 [paper]

Brain circadian clock neurons drive fitness advantages in &lt;i&gt;Drosophila&lt;/i&gt;.

Journal: iScience

Status: code on request

[1030] doi:10.1016/j.isci.2026.117185 [paper, data]

Impact of Amazonian dance on speech performance in people with Parkinson's disease.

Journal: iScience

Status: code on request, 2 datasets cited

[1031] Code ↔ Paper doi:10.1038/s41467-026-76522-3 [paper, repository]

Transcriptomic analysis of spinal V1 interneurons informs their multifunctional role in motor output.

Journal: Nature communications

Authors' code: Bikoff-Lab (no license), Bikoff-Lab/V1_KO_analysis (MIT)

Status: code verified, 5 files readable, 5 matches

[1032] Code ↔ Paper doi:10.1038/s41597-026-07807-x [paper, repository]

A Multimodal fNIRS-EEG Dataset for Unilateral Limb Motor Imagery.

Journal: Scientific data

Authors' code: useflf/Multimodal-fNIRS-EEG-Dataset (no license)

Status: code verified, 9 files readable, 10 matches

[1033] doi:10.1038/s43856-026-01846-6 [paper, data]

High-frequency visual stimulation can increase medial temporal lobe ripple oscillation density.

Journal: Communications medicine

Status: data only, 1 dataset cited

[1034] Code ↔ Paper doi:10.1073/pnas.2619797123 [paper, repository]

Selective loss of primary cilia and neurotrophic signaling in G51D α-synuclein mice highlights a common pathway to Parkinson's disease.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: doi:10.5061/dryad.4xgxd25r0 (no license)

Status: code verified

[1035] doi:10.1080/19336896.2026.2710965 [paper, data]

Epigenetic changes associated with the progression of prion disease in Syrian hamsters (&lt;i&gt;Mesocricetus auratus&lt;/i&gt;).

Journal: Prion

Status: data only, 1 dataset cited

[1036] Code ↔ Paper doi:10.1371/journal.pbio.3003935 [paper, repository]

Lateralised neural mechanisms facilitate auditory self-other distinction and coordination in human dyads.

Journal: PLoS biology

Authors' code: OSF hkqge (no license)

Status: code verified, 5 files readable, 2 matches

[1037] Code ↔ Paper doi:10.1371/journal.pbio.3003948 [paper, repository]

Neural encoding of pain is robust within but unstable between individuals.

Journal: PLoS biology

Authors' code: OSF bs3yj (no license)

Status: code verified, 9 files readable, 12 matches

[1038] Code ↔ Paper doi:10.1371/journal.pcbi.1014615 [paper, repository]

Toward reliable machine learning models for neural circuit inference: A diagnostic study of CNNs on spike trains.

Journal: PLoS computational biology

Authors' code: XiaoqianSun0104/OmniCNN_Infer_Connectivity (no license), shigerushinomoto/CoNNECT (MIT)

Status: code verified, 28 files readable, 18 matches

[1039] doi:10.1371/journal.pgen.1011985 [paper, data]

Social isolation upregulates takeout expression in female Drosophila melanogaster to promote sucrose preference.

Journal: PLoS genetics

Status: data only, 1 dataset cited

[1040] Code ↔ Paper doi:10.1371/journal.pone.0355460 [paper, repository]

Methodological trends in biological assessment of children's daily stress: A scoping review.

Journal: PloS one

Authors' code: OSF s6mxw (no license)

Status: empty repository

[1041] Code ↔ Paper doi:10.21037/qims-2026-0792 [paper, repository]

An nnU-Net-based framework with adaptive feature representation for 3D brain tumor segmentation.

Journal: Quantitative imaging in medicine and surgery

Authors' code: DIAGNijmegen/nnUNet_v2 (Apache-2.0)

Status: code verified, 199 files readable, 8 matches

[1042] doi:10.3389/fnins.2026.1909680 [paper, data]

A CNN-BiLSTM-GRU and attention-integrated hybrid network for epileptic seizure detection.

Journal: Frontiers in neuroscience

Status: data only, 1 dataset cited

[1043] Code ↔ Paper doi:10.3389/fnmol.2026.1817096 [paper, repository]

EIF2S1-PELO co-expression architecture in human brain: pairing-family decomposition reveals constitutive transcriptional coupling and functional layer separation.

Journal: Frontiers in molecular neuroscience

Authors' code: nwharbert8-ui/eif2s1-translational-qc-hubsub (MIT), Zenodo 18626362 (MIT)

Status: code verified, 16 files readable, 20 matches

[1044] Code ↔ Paper doi:10.3389/fnmol.2026.1909269 [paper, repository]

Convergent functional networks of intrinsic activity alterations in temporal lobe epilepsy and their molecular correlates.

Journal: Frontiers in molecular neuroscience

Authors' code: juryxy/JuSpace (no license)

Status: code verified, 21 files readable

Sunday, 9 August 2026 (3 papers)

[1045] Code ↔ Paper doi:10.3390/biomimetics11080569 [paper, repository]

Pretraining of Embodied Recurrent Networks Bridges the Gap Between Artificial and Cortical Neural Activities.

Journal: Biomimetics (Basel, Switzerland)

Authors' code: RevuBu/Pretrained_RNN (no license)

Status: code verified, 35 files readable, 8 matches

[1046] doi:10.3390/bs16081364 [paper, data]

Morphological Buffering in Neuro-Architecture: Interactive Effects of Color, Shape, and Area Proportion on Affective Processing.

Journal: Behavioral sciences (Basel, Switzerland)

Status: data only, 1 dataset cited

[1047] doi:10.3390/ijms27167140 [paper, data]

Astrocytic HSP90AA1 Upregulation and Altered Synaptic Signaling in Parkinson's Disease: Transcriptomic Screening and In Vivo Validation.

Journal: International journal of molecular sciences

Status: data only, 1 dataset cited

Saturday, 8 August 2026 (9 papers)

[1048] doi:10.1016/j.celrep.2026.117803 [paper]

APOE3 and APOE4 human astrocytes differentially modulate Alzheimer's disease pathology and microglial responses in chimeric mice.

Journal: Cell reports

Status: code on request

[1049] Code ↔ Paper doi:10.1016/j.isci.2026.117088 [paper, repository]

Spatial biases in visual feature representation of mouse dorsal lateral geniculate nucleus boutons.

Journal: iScience

Authors' code: Swamylab/Cha_et_al_Mouse_dLGN_FeatureMaps (no license), davidcsterratt/retistruct (no license)

Status: code verified, 131 files readable, 4 matches

[1050] Code ↔ Paper doi:10.1016/j.tjpad.2026.100646 [paper, repository]

Quantifying generalization error in machine learning prediction of cognitive decline.

Journal: The journal of prevention of Alzheimer's disease

Authors' code: rhuepp/gemacode (MIT)

Status: code verified, 4 files readable, 4 matches

[1051] Code ↔ Paper doi:10.1038/s41467-026-75862-4 [paper, repository]

Targeting m&lt;sup&gt;6&lt;/sup&gt;A writer METTL3 with engineered nanovesicles reduces neuroinflammation in vitro and in vivo.

Journal: Nature communications

Authors' code: Zenodo 20627531 (CC-BY-4.0), xulf1996-arch/mettl3_m6a_bulk_pipeline (no license)

Status: code verified, 24 files readable, 5 matches

[1052] Code ↔ Paper doi:10.1038/s41467-026-76506-3 [paper, repository]

Allele-specific chromatin architecture shapes imprinted domains and coordinates a distal enhancer and antisense transcription at the mouse Mest-Copg2 domain.

Journal: Nature communications

Authors' code: Whipple-Lab/capture-hic-imprinting (no license), Zenodo 21224497 (CC-BY-4.0)

Status: code verified, 46 files readable, 8 matches

[1053] Code ↔ Paper doi:10.1038/s41467-026-76587-0 [paper, repository]

Uncovering the signaling networks of disseminated glioblastoma cells in vivo with INSIGHT.

Journal: Nature communications

Authors' code: cycif.org (no license), ryuhjinahn (no license), hub.docker.com/r/bumproo (no license)

Status: code verified

[1054] Code ↔ Paper doi:10.1038/s41598-026-64405-y [paper, repository]

Evaluating clinical and neuroimaging predictors for cognitive-behavioral therapy outcome in obsessive-compulsive disorder.

Journal: Scientific reports

Authors' code: ritterlab/EPOC_outcome_prediction (no license)

Status: code verified, 47 files readable, 10 matches

[1055] doi:10.3390/e28080893 [paper]

Structured Fluctuations and the Information Dynamics of Self-Maintenance in Growing Neural Cellular Automata.

Journal: Entropy (Basel, Switzerland)

Status: code on request

[1056] doi:10.3390/vetsci13080790 [paper, data]

Screening of Stable Reference Genes in &lt;i&gt;Solea senegalensis&lt;/i&gt; Juveniles for Nervous Necrosis Virus (NNV) Vaccination Assays.

Journal: Veterinary sciences

Status: data only, 1 dataset cited

Friday, 7 August 2026 (29 papers)

[1057] Code ↔ Paper doi:10.1007/s00422-026-01048-2 [paper, repository]

A quality measure for repeating multiple-unit spike patterns.

Journal: Biological cybernetics

Authors' code: Zenodo 18424512 (CC-BY-4.0)

Status: code verified, 5 files readable, 1 match

[1058] Code ↔ Paper doi:10.1007/s11571-026-10522-3 [paper, repository]

Acetylcholine enhances deviance detection in Hodgkin-Huxley neuronal networks.

Journal: Cognitive neurodynamics

Authors' code: Zenodo 17072341 (MIT)

Status: code verified

[1059] Code ↔ Paper doi:10.1007/s12021-026-09807-z [paper, repository]

Optimal Size of Electrocorticography Grids for Classification of Hand Movements.

Journal: Neuroinformatics

Authors' code: UMCU-RIBS/Subgrid-Optimization (MIT)

Status: code verified, 9 files readable, 9 matches

[1060] doi:10.1016/j.cdnut.2026.109508 [paper]

Maternal Diet Enrichment in &lt;i&gt;n&lt;/i&gt;-3 Long-Chain Polyunsaturated Fatty Acids during Pregnancy and Lactation Improves Their Transfer from the Mother to the Offspring and Counterbalances High-Fat Diet-Induced Alterations in a Sex-Dependent Manner in Rats.

Journal: Current developments in nutrition

Status: code on request

[1061] doi:10.1016/j.dib.2026.113148 [paper, data]

An ERP dataset for multi-information identity authentication.

Journal: Data in brief

Status: data only, 2 datasets cited

[1062] Code ↔ Paper doi:10.1016/j.isci.2026.116955 [paper, repository]

Specialized cortical ER architecture modulates Ca&lt;sup&gt;2+&lt;/sup&gt; signaling dynamics.

Journal: iScience

Authors' code: Zenodo 20699141 (CC-BY-4.0), Zenodo 20699140 (CC-BY-4.0), jsneyd/courjaret-et-al--2025 (no license)

Status: code verified, 27 files readable

[1063] doi:10.1016/j.jbc.2026.113399 [paper, data]

Domain-dependent uncoupling of the co-chaperone and E3 ubiquitin ligase CHIP underlies heterogeneity in spinocerebellar ataxia 48.

Journal: The Journal of biological chemistry

Status: data only, 1 dataset cited

[1064] Code ↔ Paper doi:10.1016/j.neuron.2026.07.016 [paper, repository]

Inferring brain-wide interactions using data-constrained recurrent neural network models.

Journal: Neuron

Authors' code: HarveyLab/Acquisition2P_class (MIT), OSF u3kcp (no license), rajanlab/CURBD (GPL-3.0)

Status: code verified, 165 files readable, 8 matches

[1065] doi:10.1016/j.tjpad.2026.100649 [paper]

Timing of cognitive decline onset and life-course trajectories A pooled longitudinal analysis of 14,389 adults across three cohorts.

Journal: The journal of prevention of Alzheimer's disease

Status: code on request

[1066] Code ↔ Paper doi:10.1016/j.xpro.2026.104766 [paper, repository]

Protocol for live-imaging of blood flow and vascular permeability in zebrafish larvae.

Journal: STAR protocols

Authors' code: Zenodo 14770236 (CC0-1.0), preethirajamannar/zebrafish-pituitary-blood-flow (CC0-1.0)

Status: code verified, 4 files readable

[1067] doi:10.1021/acsomega.6c02969 [paper, data]

Integrated Virtual Screening and Molecular Electrostatic Surface Potential Descriptors for Predicting BACE1 Inhibitor Interactions in Alzheimer's Disease.

Journal: ACS omega

Status: data only, 1 dataset cited

[1068] Code ↔ Paper doi:10.1038/s41467-026-75331-y [paper, repository]

Deterministic wet etching of aspheric fiber microlenses with tunable conic geometry for tailored optical functionality.

Journal: Nature communications

Authors' code: codeocean:9453164 (no license)

Status: code found, still to be checked

[1069] Code ↔ Paper doi:10.1038/s41467-026-76267-z [paper, repository]

Modulation of habenula axon terminals supports action-outcome associations in larval zebrafish.

Journal: Nature communications

Authors' code: portugueslab/brunoise (GPL-3.0), portugueslab/Paoli_et_al_2025 (no license)

Status: code verified, 32 files readable, 1 match

[1070] Code ↔ Paper doi:10.1038/s41526-026-00644-7 [paper, repository]

A computational model of altered neuronal activity in altered gravity.

Journal: NPJ microgravity

Authors' code: camillegontier/neuron_microgravity (MIT)

Status: code verified, 13 files readable, 2 matches

[1071] Code ↔ Paper doi:10.1038/s42003-026-10751-6 [paper, repository]

Frequency-specific cortical subnetworks support fast human swallowing.

Journal: Communications biology

Authors' code: Zenodo 20393275 (MIT), muhlep/swallowing-meg-connectivity (MIT)

Status: code verified, 25 files readable, 8 matches

[1072] doi:10.1073/pnas.2528246123 [paper, data]

Protecting episodic memory after sleep loss: Similar benefits of exercise and naps via distinct neural contributions.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 1 dataset cited

[1073] Code ↔ Paper doi:10.1126/sciadv.aeb3005 [paper, repository]

Neural competition between prefrontal and auditory cortex constrains novel sound strategy learning.

Journal: Science advances

Authors' code: Zenodo 18947789 (CC-BY-4.0), rcbliu/prefrontal-and-auditory-cortex-compete-in-learning (no license)

Status: code verified, 48 files readable

[1074] Code ↔ Paper doi:10.1126/sciadv.aed0772 [paper, repository]

Deep learning reveals a neurocomputational mechanism predicting depression risk in adolescents.

Journal: Science advances

Authors' code: Zenodo 18647146 (CC-BY-4.0)

Status: code verified, 5 files readable, 3 matches

[1075] Code ↔ Paper doi:10.1126/sciadv.aee8327 [paper, repository]

Distributed burst firing mediates optimized cortical encoding of natural self-motion.

Journal: Science advances

Authors' code: borealisdata.ca/privateurl.xhtml (no license)

Status: code verified

[1076] Code ↔ Paper doi:10.1162/imag.a.1328 [paper, repository]

A robust and reproducible automated MRI pipeline for quantifying tissue outcomes after experimental stroke in multi-center preclinical networks.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: cabeen/span-mri (other)

Status: code verified, 37 files readable, 13 matches

[1077] Code ↔ Paper doi:10.1371/journal.pcbi.1014585 [paper, repository]

Decoding behavior with minimal and interpretable agent models.

Journal: PLoS computational biology

Authors' code: giorgionicoletti/FSC-inference-MAPSO (no license)

Status: code verified, 19 files readable, 6 matches

[1078] Code ↔ Paper doi:10.1523/eneuro.0050-26.2026 [paper, repository]

GluN2A Enables Noradrenergic Control of Prefrontal Oscillations and Cognitive Flexibility.

Journal: eNeuro

Authors' code: NeuroDataa/PatchClampAnalysis (no license), NeuroDataa/Grin2a_LC_mPFC_pMEA_Analysis (no license), NeuroData/PatchClampAnalysis (no license), NeuroDataa/MEA_Analysis (no license)

Status: code verified, 2 files readable, 2 matches

[1079] Code ↔ Paper doi:10.1523/eneuro.0289-25.2026 [paper, repository]

Reconstruction of Imagined Melody with Relative Pitch Decoding in Electrocorticography.

Journal: eNeuro

Authors' code: JII-Kwon/ECoG_Music_Imagined_Classification (no license)

Status: code verified, 15 files readable, 3 matches

[1080] Code ↔ Paper doi:10.21203/rs.3.rs-10380518/v1 [paper, repository]

Shared Genetic Architecture of Premenstrual Disorder and Postpartum Depression: Registry-Based and Genetic Evidence

Journal: Research Square (preprint)

Authors' code: alexploner/cfdr.pleio (GPL-3.0)

Status: code verified, 9 files readable, 1 match

[1081] Code ↔ Paper doi:10.3389/fnbeh.2026.1871826 [paper, repository]

Effects of repetitive scanning ultrasound on the intraneuronal dendritic signalling of CA1 pyramidal neurons.

Journal: Frontiers in behavioral neuroscience

Authors' code: somogyia/Intraneuronal-dendritic-signalling (no license)

Status: code verified, 4 files readable

[1082] Code ↔ Paper doi:10.3389/fnbeh.2026.1895371 [paper, repository]

Discrete and differentiated encoding of distinct components of spatial experience occurs within the proximodistal subfields of the dorsoventral axis of the hippocampus.

Journal: Frontiers in behavioral neuroscience

Authors' code: stardist/stardist (BSD-3-Clause)

Status: code verified, 59 files readable, 1 match

[1083] doi:10.3390/s26165021 [paper]

Automatic Segmentation of Ischaemic Stroke Lesions Using Transformers and Convolutional Neural Networks Applied to Multimodal Neuroimaging.

Journal: Sensors (Basel, Switzerland)

Status: code on request

[1084] Code ↔ Paper doi:10.7554/elife.105528 [paper, repository]

Functional specialization of mPFC-BLA and mPFC-NAc pathways in affective state representation.

Journal: eLife

Authors' code: xiaoqiansun0104/caiman-based-ca2-processing (MIT), doi:10.5061/dryad.02v6wwqkj (no license)

Status: code verified, 4 files readable

[1085] Code ↔ Paper doi: [paper, repository]

SOX12 and DELTA mediate ecdysone-driven adult neural cell proliferation during metamorphosis

Journal: The Journal of biological chemistry

Authors' code: BGI-flexlab/SOAPnuke (GPL-3.0)

Status: code verified, 34 files readable, 1 match

Thursday, 6 August 2026 (27 papers)

[1086] Code ↔ Paper doi:10.1002/advs.202519893 [paper, repository]

NeuroSuite for Long-Term Functional and Structural Studies of Air-Liquid Interface Cerebral Organoids.

Journal: Advanced science (Weinheim, Baden-Wurttemberg, Germany)

Authors' code: BelNeuroCoding/NeuroMaps (MIT), madlancaster/Neuroweb (no license), Zenodo 19120269 (CC-BY-4.0)

Status: code verified, 1,714 files readable, 11 matches

[1087] doi:10.1016/j.isci.2026.117028 [paper]

Intermittent fasting promotes remodeling of neural and vascular networks in visceral white adipose tissue.

Journal: iScience

Status: code on request

[1088] Code ↔ Paper doi:10.1016/j.isci.2026.117031 [paper, repository]

Plasma metabolomic signatures of migraine in 479,760 adults.

Journal: iScience

Authors' code: sun160414/UKB_Metabolomic_Migraine (no license)

Status: code verified, 6 files readable, 9 matches

[1089] doi:10.1016/j.isci.2026.117069 [paper]

The deficiency of KIF2C leads to abnormal distribution of cortical neurons and behavioral deficits in mice.

Journal: iScience

Status: code on request

[1090] doi:10.1016/j.xpro.2026.104769 [paper]

Protocol to improve gradient-index lens implantation in the mouse medial prefrontal cortex using NeuralGlider-assisted insertion.

Journal: STAR protocols

Status: code on request

[1091] Code ↔ Paper doi:10.1016/j.xpro.2026.104773 [paper, repository]

Protocol for fluorescent false neurotransmitter live imaging of dopamine release dynamics from individual synapses in acute brain slices.

Journal: STAR protocols

Authors' code: MDevineLab/FFN200-live-imaging (CC-BY-4.0)

Status: code verified, 4 files readable

[1092] Code ↔ Paper doi:10.1038/s12276-026-01801-4 [paper, repository]

Putative glioblastoma origin-like cells in the subventricular zone: isolation and characterization.

Journal: Experimental & molecular medicine

Authors' code: hoonbiolab/yugbmoc_paper (no license)

Status: code verified, 7 files readable, 6 matches

[1093] Code ↔ Paper doi:10.1038/s41398-026-04341-7 [paper, repository]

Aberrant insula activity to negative and reduced learning from positive feedback underlie maladaptive self-beliefs in depression.

Journal: Translational psychiatry

Authors' code: OSF gwkp3 (no license)

Status: code verified, 1 file readable, 13 matches

[1094] doi:10.1038/s41467-026-76173-4 [paper, data]

α-Synuclein blocks endoplasmic reticulum co-translational protein translocation early in Parkinson's disease.

Journal: Nature communications

Status: data only, 1 dataset cited

[1095] doi:10.1038/s41467-026-76286-w [paper, data]

Regional diversity of cranial skeletal stem cells governs bone morphogenetic protein-2 mediated bone regeneration.

Journal: Nature communications

Status: data only, 2 datasets cited

[1096] Code ↔ Paper doi:10.1093/bioadv/vbag198 [paper, repository]

SeizureBiomeDB: a unified database of gut microbiome alterations in pediatric and adult epilepsy.

Journal: Bioinformatics advances

Authors' code: AD-txigfwbexxk23/SeizureBiomeDB (no license)

Status: dead link

[1097] doi:10.1111/cpr.70269 [paper, data]

Chromatin Remodeller BRD9 Orchestrates Odontoblastic Differentiation via Coordinating RUNX2-KLF4.

Journal: Cell proliferation

Status: data only, 1 dataset cited

[1098] Code ↔ Paper doi:10.1162/imag.a.1322 [paper, repository]

Fine-scale individualized gyral folding-based cortical similarity networks reveal distinct organizational patterns in Alzheimer's disease and Lewy body dementia.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: m1nhengChen/Gyral-Folding-Network (MIT)

Status: code verified, 6 files readable, 9 matches

[1099] Code ↔ Paper doi:10.1162/imag.a.1323 [paper, repository]

SUITPy: A Python-based toolbox for the analysis of cerebellar functional and anatomical imaging data across the human lifespan.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: DiedrichsenLab/SUITPy (MIT)

Status: code verified, 26 files readable, 6 matches

[1100] doi:10.1162/imag.a.1324 [paper, data]

Spontaneous activation of cortical somatosensory networks depresses their excitability in preterm human neonates.

Journal: Imaging neuroscience (Cambridge, Mass.)

Status: data only, 1 dataset cited

[1101] Code ↔ Paper doi:10.1162/imag.a.1330 [paper, repository]

Human risk taking and metabolic state: No credible evidence for desacyl-ghrelin modulation of neural or behavioural effects.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: OSF gcjeq (no license)

Status: code verified, 50 files readable, 3 matches

[1102] Code ↔ Paper doi:10.1162/imag.a.1331 [paper, repository]

Beyond the canonical HRF: Flexible temporal modeling reveals unconstrained BOLD profiles during naturalistic viewing.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: OSF qky8p (no license)

Status: empty repository

[1103] Code ↔ Paper doi:10.1371/journal.pcbi.1014222 [paper, repository]

Neural population models for EEG: From Canonical models to alternative model structures.

Journal: PLoS computational biology

Authors' code: NinaOmejc/ENEEGMA (MIT)

Status: code verified, 83 files readable, 16 matches

[1104] Code ↔ Paper doi:10.3389/fbinf.2026.1832826 [paper, repository]

Spatial transcriptomics reveal heterogeneous cell‒cell interactions among brain regions in cuprizone model consistent with multiple sclerosis lesions.

Journal: Frontiers in bioinformatics

Authors' code: sunduanchen/Scissor (GPL-3.0)

Status: code verified, 20 files readable, 4 matches

[1105] doi:10.3389/fcvm.2026.1859362 [paper, data]

The association between reduced hypothalamic subregion volume and aortic aneurysm risk: a Mendelian randomization and multi-omics study with clinical MRI validation.

Journal: Frontiers in cardiovascular medicine

Status: data only, 1 dataset cited

[1106] Code ↔ Paper doi:10.3389/fneur.2026.1822479 [paper, repository]

Circulating neuron-derived cfDNA for blood-based detection of Alzheimer's and other neurodegenerative conditions.

Journal: Frontiers in neurology

Authors' code: nanoporetech/dorado (GPL-3.0), nanoporetech/modkit (GPL-3.0), Wasatch-Biolabs-Bfx/MethylSeqR (other)

Status: code verified, 925 files readable, 4 matches

[1107] Code ↔ Paper doi:10.3389/fonc.2026.1886395 [paper, repository]

Resources are associated with functional outcome and brain morphometry in childhood cancer survivors.

Journal: Frontiers in oncology

Authors' code: SCAN-NRAD/DL-DiReCT (BSD-3-Clause)

Status: code verified, 15 files readable, 2 matches

[1108] Code ↔ Paper doi:10.3389/frai.2026.1891883 [paper, repository]

RN-D&lt;sup&gt;3&lt;/sup&gt;: detection, differentiation, and delineation of radiation necrosis on post-contrast MRI.

Journal: Frontiers in artificial intelligence

Authors' code: chamseddine-lab/rn-d3 (other)

Status: code verified, 14 files readable, 2 matches

[1109] doi:10.3390/ncrna12040031 [paper, data]

Long-Read RNA Sequencing Reveals an Isoform Switching Pattern in Healthy Microglial Cell Lines Exposed to Radiotherapy.

Journal: Non-coding RNA

Status: data only, 1 dataset cited

[1110] doi:10.3390/nu18152575 [paper, data]

Diminished Maternal Tryptophan Leads to Sexually Dimorphic Differences in the Placenta-Brain Axis.

Journal: Nutrients

Status: data only, 1 dataset cited

[1111] Code ↔ Paper doi:10.7554/elife.103224 [paper, repository]

Brainstem neurons coordinate the bladder and urethral sphincter for urination.

Journal: eLife

Authors' code: xieyangshuying/Brainstem-neurons-coordinate-the-bladder-and-urethral-sphincter-for-urination (Apache-2.0)

Status: code verified, 8 files readable

[1112] Code ↔ Paper doi:10.7759/cureus.114096 [paper, repository]

Serious Games: Human-AI Interaction, Evolution, and Co-evolution.

Journal: Cureus

Authors' code: Zenodo 21428706 (CC-BY-NC-ND-4.0)

Status: code verified, 1 file readable

Wednesday, 5 August 2026 (41 papers, 8 on this page)

[1113] Code ↔ Paper doi:10.1002/nep3.70054 [paper, repository]

Serum elemental profile-based machine learning models for Alzheimer's disease identification and cognitive score prediction.

Journal: Neuroprotection (Chichester, England)

Authors' code: weige347/AD-classifier (no license)

Status: code verified, 7 files readable, 10 matches

[1114] Code ↔ Paper doi:10.1016/j.bpr.2026.100280 [paper, repository]

Morphometric analysis reveals that the chick cranial neural tube expands as an active shell.

Journal: Biophysical reports

Authors' code: nchahare/spatchcocking (MIT)

Status: code verified, 23 files readable, 16 matches

[1115] Code ↔ Paper doi:10.1016/j.celrep.2026.117793 [paper, repository]

Clustered inputs engage dendritic nonlinearities and calcium signaling to support efficient place-field formation in CA1 pyramidal neurons.

Journal: Cell reports

Authors' code: Zenodo 20738191 (GPL-3.0), zenodo.com (no license), poirazi-lab/tasciotti_et_al_2026 (GPL-3.0)

Status: code verified, 128 files readable, 22 matches

[1116] Code ↔ Paper doi:10.1016/j.celrep.2026.117794 [paper, repository]

Subicular plateaus signal reward locations during goal-directed behavior.

Journal: Cell reports

Authors' code: Zenodo 21177036 (CC-BY-4.0)

Status: code verified, 25 files readable, 6 matches

[1117] Code ↔ Paper doi:10.1016/j.ebiom.2026.106400 [paper, repository]

Data-driven trajectories of atrophy explain clinical heterogeneity across Lewy body diseases.

Journal: EBioMedicine

Authors' code: ucl-usyd-transcend.github.io (no license)

Status: code verified

[1118] Code ↔ Paper doi:10.1016/j.isci.2026.117108 [paper, repository]

PVT inhibition mitigates neuropathology and cognitive deficits in chronic cerebral hypoperfusion.

Journal: iScience

Authors' code: SunLab-code/WGCNA-CCH-iScience (no license)

Status: code verified, 2 files readable, 1 match

[1119] Code ↔ Paper doi:10.1016/j.xcrm.2026.102967 [paper, repository]

Phase 1 study of intracranial T cell therapy with pemetrexed for refractory brain metastases and glioblastomas.

Journal: Cell reports. Medicine

Authors' code: lh3/bwa (GPL-3.0)

Status: code verified, 68 files readable

[1120] Code ↔ Paper doi:10.1016/j.xcrm.2026.102968 [paper, repository]

Corpora amylacea profiling reveals disease stage and brain region-specific alterations in glycogen metabolism in Alzheimer's disease patient brains.

Journal: Cell reports. Medicine

Authors' code: doi:10.7910/dvn/sougim (no license), forum.image.sc/t/script-for-average-non-cell-detection-area-in-multiple-annotations (no license)

Status: code verified

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