Every paper, by date: page 2

44,644 papers with a page: 24,189 with their authors' code, 4,955 with code on request, 15,495 with data only. The most recent first, 224 a page. Page 2 of 200: 1 October 2026 to 3 September 2026.

Thursday, 1 October 2026 (24 papers, 5 on this page)

[225] Code ↔ Paper doi:10.1111/psyp.70407 [paper, repository]

Delivery and Attitude Modulate Shared Neural Processing of Speech Through Distinct Frequency Channels.

Journal: Psychophysiology

Authors' code: Zenodo 22808469 (MIT), avigoldstein-biu/delivery-attitude-isc (MIT)

Status: code verified, 96 files readable, 30 matches

[226] Code ↔ Paper doi:10.1111/psyp.70409 [paper, repository]

Social Anxiety Predicts Enhanced Electrocortical Sensitivity to the Mental State Meanings Revealed by Gaze Patterns.

Journal: Psychophysiology

Authors' code: OSF tw5rp (no license)

Status: code verified, 1 file readable

[227] doi:10.1371/journal.pone.0357964 [paper, data]

Graph theory-based machine learning for automated fibromyalgia diagnosis using fMRI during an emotional task.

Journal: PloS one

Status: data only, 2 datasets cited

[228] Code ↔ Paper doi:10.7554/elife.107370 [paper, repository]

A cortical-hippocampal communication undergoes rebalancing after new learning.

Journal: eLife

Authors' code: figshare 33467404 (CC-BY-4.0), DVWangLab/Hall-and-Wang-eLife-2026 (MIT)

Status: code verified, 1 file readable

[229] Code ↔ Paper doi:10.7554/elife.108588 [paper, repository]

Bidirectional redistribution of actomyosin drives epithelial invagination in ascidian siphon tube morphogenesis.

Journal: eLife

Authors' code: F1shzi/SiphonInvagination_VertexModel (Apache-2.0)

Status: code verified, 7 files readable, 4 matches

Wednesday, 30 September 2026 (14 papers)

[230] doi:10.1002/advs.77733 [paper]

Spatial Transcriptomics Reveals a T Cell-Mediated Microglial Activation Axis of Immune Checkpoint Inhibition-Related Adverse Events in the Brain.

Journal: Advanced science (Weinheim, Baden-Wurttemberg, Germany)

Status: code on request

[231] doi:10.1002/advs.78033 [paper, data]

A Neutrophil Membrane-Encapsulated Pd/hCeO<sub>2</sub> Nanoformulation for Alleviating Age-Dependent Perioperative Neurocognitive Disorders.

Journal: Advanced science (Weinheim, Baden-Wurttemberg, Germany)

Status: data only, 1 dataset cited

[232] Code ↔ Paper doi:10.1038/s41398-026-04479-4 [paper, repository]

Altered semantic prediction error processing with increasing schizotypal and autistic traits.

Journal: Translational psychiatry

Authors' code: OSF 3rv4m (no license)

Status: code verified, 3 files readable, 1 match

[233] Code ↔ Paper doi:10.1038/s41467-026-77782-9 [paper, repository]

Multilayer MEG source modelling enables depth-resolved laminar inference in humans.

Journal: Nature communications

Authors' code: danclab/spm (GPL-2.0), danclab/multilaminar_sim (no license), jbonaiuto/cued_action_selection (GPL-3.0), danclab/auditory_laminar (no license), TommyClausner/meglyon-experiment-runner (GPL-3.0), danclab/laminar_motor_erf (GPL-3.0), cophyteam/laminar_visual_erf (GPL-3.0), Zenodo 21638150 (GPL-3.0)

Status: code verified, 2,129 files readable, 16 matches

[234] Code ↔ Paper doi:10.1126/sciadv.aee9300 [paper, repository]

Population connective field modeling reveals proto-retinotopic visual cortex organization in the prenatal human brain.

Journal: Science advances

Authors' code: ecr05/dHCP_template_alignment (MIT), Zenodo 22152241 (CC-BY-4.0)

Status: code verified, 143 files readable, 20 matches

[235] Code ↔ Paper doi:10.1126/sciadv.aef9864 [paper, repository]

Speech clocks decode dementia phenotypes, social exposome, and biological aging.

Journal: Science advances

Authors' code: Zenodo 20186949 (CC-BY-4.0), euroladbrainlat/Speech-age-gap (no license)

Status: code verified, 20 files readable, 10 matches

[236] Code ↔ Paper doi:10.1162/imag.a.1379 [paper, repository]

Brain network differences in second language learning depend on individual competencies.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: OSF bj6pt (no license)

Status: empty repository, 1 file readable

[237] Code ↔ Paper doi:10.1162/imag.a.1384 [paper, repository]

Mind the brain age: How segmentation and template selection reshape structural connectomes.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: Inria-Empenn/Anima-Public (AGPL-3.0), CarloFerritto/Structural_connectomes_in_Aging (MIT)

Status: code verified, 283 files readable, 16 matches

[238] Code ↔ Paper doi:10.1371/journal.pone.0343457 [paper, repository]

An efficient brain tumor classification system with accurate recognition and complementary downsampling blocks.

Journal: PloS one

Authors' code: figshare 28537058 (CC-BY-4.0)

Status: code verified

[239] Code ↔ Paper doi:10.1371/journal.pone.0357293 [paper, repository]

The effects of coherent breathing and blue light after an acute stress on sleepiness and the stress response in a workplace setting: A randomized double-blind cross-over trial.

Journal: PloS one

Authors' code: Zenodo 20596627 (CC-BY-4.0)

Status: code verified

[240] doi:10.1371/journal.pone.0358241 [paper, data]

A context-aware temporal modeling through unified multi-scale temporal encoding and hierarchical sequence learning for single-channel EEG sleep staging.

Journal: PloS one

Status: data only, 1 dataset cited

[241] doi:10.26508/lsa.202603708 [paper, data]

Human-biased <i>MEIS1</i> expression by a promoter noncoding RNA regulates neural stem cell proliferation.

Journal: Life science alliance

Status: data only, 2 datasets cited

[242] Code ↔ Paper doi:10.7554/elife.104249 [paper, repository]

Biophysically inspired mean-field model of neuronal populations driven by ion-exchange mechanisms.

Journal: eLife

Authors' code: grabuffo/ion-exchange-neural-mass (MIT)

Status: code verified, 19 files readable, 10 matches

[243] doi: [paper, data]

Neural encoding of auditory processing in schizophrenia

Journal: Frontiers in neuroscience

Status: data only, 1 dataset cited

Tuesday, 29 September 2026 (5 papers)

[244] doi:10.1007/s11682-026-01194-y [paper]

The mediating effect of neuroticism on the association between brain signal variability in the prefrontal cortex and depression among healthy individuals.

Journal: Brain imaging and behavior

Status: code on request

[245] Code ↔ Paper doi:10.7554/elife.110932 [paper, repository]

A real-time, multi-animal model for automatic face detection and identification of freely moving common marmosets based on YOLOv8 algorithms.

Journal: eLife

Authors' code: Jy-Yang-bot/real-time-marmoset-recognition (MIT)

Status: code verified, 10 files readable, 3 matches

[246] doi: [paper, data]

Mesenchymal stem cell-derived extracellular vesicles ameliorate heat stroke-induced hippocampal injury and modulate VIM-AS1-associated miR-34a-5p/Per2 signaling

Journal: Frontiers in immunology

Status: data only, 1 dataset cited

[247] doi: [paper, data]

Toward reliable computer-aided brain tumor diagnosis: a contrast-enhanced deep learning approach with hybrid KNN classification

Journal: Frontiers in human neuroscience

Status: data only, 1 dataset cited

[248] doi: [paper, data]

Tutorial on using EEG microstates to study moment-to-moment large-scale functional brain network dynamics in neurodevelopment

Journal: Frontiers in neuroscience

Status: data only, 1 dataset cited

Monday, 28 September 2026 (5 papers)

[249] doi:10.1007/s00424-026-03212-w [paper, data]

Analysis of sodium self-inhibition of the epithelial sodium channel (ENaC) using classical and medium-throughput automated two-electrode voltage-clamp recordings.

Journal: Pflugers Archiv : European journal of physiology

Status: data only, 1 dataset cited

[250] doi:10.1093/braincomms/fcag319 [paper, data]

Inhibition/excitation balance is associated with functional connectivity during cognitive flexibility performance.

Journal: Brain communications

Status: data only, 1 dataset cited

[251] doi:10.1371/journal.pone.0358740 [paper, data]

Effects of blood flow restriction combined with visual feedback training on lower limb function and the serum levels of BDNF and VEGF in patients with stroke.

Journal: PloS one

Status: data only, 1 dataset cited

[252] Code ↔ Paper doi:10.7554/elife.108236 [paper, repository]

Selective lifelong suppression of an odor processing channel in response to critical period experience.

Journal: eLife

Authors' code: adacks/Salman-et-al (no license)

Status: code verified, 1 file readable

[253] Code ↔ Paper doi:10.7554/elife.110011 [paper, repository]

Tau hyperphosphorylation impairs cooperative binding to microtubules and perturbs organelle trafficking in neurons.

Journal: eLife

Authors' code: danielbeaudet-McGill/scripts_data_Beaudet_Berger_Hendricks_eLife_2026 (MIT)

Status: code verified, 1 file readable

Sunday, 27 September 2026 (3 papers)

[254] doi:10.1002/advs.202524087 [paper, data]

Gm26550 Modulates Learning and Memory by Increasing IGF1 mRNA Expression and Stability in Nrf2^-/- Mice.

Journal: Advanced science (Weinheim, Baden-Wurttemberg, Germany)

Status: data only, 1 dataset cited

[255] Code ↔ Paper doi:10.1002/advs.77857 [paper, repository]

Brain Network Dynamics of Local and Global Predictive Processing in Aging.

Journal: Advanced science (Weinheim, Baden-Wurttemberg, Germany)

Authors' code: leonardob92/LBPD-1.0 (GPL-3.0), leonardob92/broadness_meg_auditoryrecognition (no license), MathiasHoueAndersen/Predictive-Processing-In-Aging (no license), leonardob92/BROADNESS_Aging_MMN_AdvancedScience (no license), mathiashoueandersen/hierarchical-predictive-processing (no license)

Status: code verified, 245 files readable, 30 matches

[256] Code ↔ Paper doi:10.1002/advs.77986 [paper, repository]

DUET-seq: An Open-Source Droplet Platform for High-Fidelity Joint Chromatin and Transcriptome Profiling Reveals Temporal Regulatory Decoupling in Single Cells.

Journal: Advanced science (Weinheim, Baden-Wurttemberg, Germany)

Authors' code: biochengd/DUET-seq (no license)

Status: code verified, 28 files readable, 34 matches

Saturday, 26 September 2026 (5 papers)

[257] Code ↔ Paper doi:10.1007/s00429-026-03166-w [paper, repository]

Autoencoders for unsupervised analysis of rat myeloarchitecture.

Journal: Brain structure & function

Authors' code: UEF-Multiscale-Imaging/AE-and-GMM-myelin-stained-tissue (MIT)

Status: code verified, 53 files readable, 6 matches

[258] Code ↔ Paper doi:10.1038/s41398-026-04492-7 [paper, repository]

Resolving temporal threat uncertainty by observational learning involves the amygdala, hippocampus and anterior insula.

Journal: Translational psychiatry

Authors' code: OSF 653pr (no license), OSF 5ny9u (no license)

Status: code verified, 11 files readable

[259] Code ↔ Paper doi: [paper, repository]

Beyond bacteria: a multi-omics view of the gut–brain axis in Parkinson’s disease

Journal: Frontiers in cellular and infection microbiology

Authors' code: hanhuiyeye/PD (no license), euniceokk/prisma (no license)

Status: code verified, 4 files readable, 4 matches

[260] doi: [paper, data]

NeuroTrustNet: a cost-effective multimodal ensemble framework for brain tumor classification under cross-dataset variability

Journal: Frontiers in artificial intelligence

Status: data only, 4 datasets cited

[261] doi: [paper, data]

Gut microbiota dysbiosis is associated with hippocampal neuronal damage and behavioral alterations in APP/PS1 mice with high-salt diet

Journal: Frontiers in microbiology

Status: data only, 1 dataset cited

Friday, 25 September 2026 (13 papers)

[262] doi:10.1002/2211-5463.70302 [paper, data]

KDAC6 alters cell morphology and motility through positive and negative modulation of F-actin distribution.

Journal: FEBS open bio

Status: data only, 10 datasets cited

[263] doi:10.1007/s00401-026-03082-7 [paper, data]

Deletion or immunotherapeutic blockade of FcγRIIb (CD32b) impairs α-Syn propagation in vivo.

Journal: Acta neuropathologica

Status: data only, 1 dataset cited

[264] doi:10.1039/d6tb01306f [paper, data]

Hyaluronic acid-alginate hydrazone crosslinked hydrogels support the generation and maturation of V2a interneurons.

Journal: Journal of materials chemistry. B

Status: data only, 1 dataset cited

[265] Code ↔ Paper doi:10.1126/sciadv.adz9632 [paper, repository]

Population coding under the scale invariance of high-dimensional noise.

Journal: Science advances

Authors' code: Zenodo 19504768 (CC-BY-4.0), Sai-Sumedh/scaling-population-coding (no license)

Status: code verified, 77 files readable, 6 matches

[266] Code ↔ Paper doi:10.1126/sciadv.aef2202 [paper, repository]

MCA1 mechanosensitive channels enable fast communication of wound signals between lateral roots.

Journal: Science advances

Authors' code: Zenodo 20036842 (CC-BY-4.0), angelbaudon/angelbaudon-lateral-root-communication-2026 (no license)

Status: code verified, 22 files readable

[267] Code ↔ Paper doi:10.1371/journal.pone.0357956 [paper, repository]

Early electrophysiological responses reflect precision-weighted prediction errors to face features.

Journal: PloS one

Authors' code: OSF xhmcu (no license)

Status: code verified, 1 file readable

[268] Code ↔ Paper doi:10.1371/journal.pone.0358552 [paper, repository]

High-frequency stimulation-induced secondary hyperalgesia shifts temporal order judgment and increases precuneus nodal degree in healthy adults.

Journal: PloS one

Authors' code: MariusKlug/zapline-plus (GPL-3.0), crisglav/discover-eeg (CC-BY-4.0)

Status: code verified, 77 files readable, 4 matches

[269] Code ↔ Paper doi:10.1371/journal.pone.0359316 [paper, repository]

A neuroevolution-driven agent-based model of coral larvae settlement.

Journal: PloS one

Authors' code: sarahkcw/coral-larvae-abm (MIT)

Status: code verified, 229 files readable, 31 matches

[270] Code ↔ Paper doi:10.7554/elife.110588 [paper, repository]

Opening the black box toward a modular approach to spike sorting.

Journal: eLife

Authors' code: Zenodo 20407862 (CC-BY-4.0), SpikeInterface/sorting_components_benchmark_paper (MIT), SpikeInterface/spikeinterface (MIT)

Status: code verified, 672 files readable, 23 matches

[271] Code ↔ Paper doi:10.7554/elife.110770 [paper, repository]

Retinal curl as a functional signal for heading estimation beyond the focus of expansion.

Journal: eLife

Authors' code: OSF b37rg (no license), supp:PMC13614786/elife-110770-code1.zip (no license)

Status: code verified, 16 files readable, 7 matches

[272] Code ↔ Paper doi: [paper, repository]

Going deeper with morphologically detailed neural networks by simulation-based gradient propagation

Journal: Frontiers in computational neuroscience

Authors' code: MS-GEB/DeepDendrite-modularization (Apache-2.0)

Status: code verified, 1,731 files readable

[273] doi: [paper, data]

Material context moderates the occupation-adjusted association between Visualization and prefrontal hemodynamics during naturalistic design: an exploratory wearable fNIRS study

Journal: Frontiers in neuroergonomics

Status: data only, 1 dataset cited

[274] Code ↔ Paper doi: [paper, repository]

Real-time closed-loop feedback system for mouse mesoscale cortical signal and movement control

Journal: eLife

Authors' code: pankajkgupta/clopy (GPL-3.0)

Status: code verified, 15 files readable, 11 matches

Monday, 21 September 2026 (3 papers)

[275] doi:10.1186/s12915-026-02717-1 [paper, data]

Odorant receptor structures predict the major female sex pheromone component in a moth.

Journal: BMC biology

Status: data only, 1 dataset cited

[276] Code ↔ Paper doi:10.7554/elife.106554 [paper, repository]

Enhanced tactile coding in rat neocortex under darkness.

Journal: eLife

Authors' code: UT-yakusaku/Yamashiro-eLife-2024 (MIT)

Status: code verified, 9 files readable, 2 matches

[277] doi:10.7554/elife.109901 [paper, data]

Infants at high and low likelihood for autism show different EEG developmental trajectories in speech tracking and statistical learning.

Journal: eLife

Status: data only, 1 dataset cited

Sunday, 20 September 2026 (2 papers)

[278] doi:10.1080/0886022x.2026.2732422 [paper, data]

Serum BDNF and cognitive risk in maintenance hemodialysis: a machine learning study.

Journal: Renal failure

Status: data only, 1 dataset cited

[279] doi:10.5662/wjm.117220 [paper]

Comparison of propofol alone <i>vs</i> propofol-phenylephrine combination for intraoperative hemodynamic stability in glioma surgery.

Journal: World journal of methodology

Status: code on request

Saturday, 19 September 2026 (2 papers)

[280] Code ↔ Paper doi:10.1096/fba.2026-00194 [paper, repository]

Glial and Vascular Plasma Biomarkers Across the Alzheimer's Disease Continuum: An ADNI-Based Longitudinal Study.

Journal: FASEB bioAdvances

Authors' code: Khodakaram/adni-glial-vascular-axis (MIT)

Status: code verified, 17 files readable, 17 matches

[281] doi:10.1186/s12868-026-01050-1 [paper, data]

Structural characteristics of local cortical networks wired by distance dependent connectivity rules.

Journal: BMC neuroscience

Status: data only, 1 dataset cited

Friday, 18 September 2026 (11 papers)

[282] doi:10.1007/s00415-026-14134-z [paper]

What do ALS motor phenotypes measure? A population-based decomposition of their prognostic dimensions.

Journal: Journal of neurology

Status: code on request

[283] Code ↔ Paper doi:10.1007/s00422-026-01061-5 [paper, repository]

Modeling synaptic interactions between mammalian breathing and swallowing central pattern generators.

Journal: Biological cybernetics

Authors' code: ptolmachev/SimplifiedModel_rCPG_swCPG_interaction (MIT)

Status: code verified, 45 files readable, 5 matches

[284] doi:10.1080/22221751.2026.2728216 [paper, data]

Triacylglycerol metabolism is a novel target to combat West Nile virus infection.

Journal: Emerging microbes & infections

Status: data only, 1 dataset cited

[285] Code ↔ Paper doi:10.1093/braincomms/fcag279 [paper, repository]

Network flexibility facilitates treatment-induced recovery in post-stroke aphasia.

Journal: Brain communications

Authors' code: isaacfalconer/dfc_toolbox (MIT), OSF zja2b (no license)

Status: code verified, 80 files readable, 6 matches

[286] Code ↔ Paper doi:10.1093/nc/niag059 [paper, repository]

Doing the math: detection and neural processing of auditory task-unrelated stimuli while solving arithmetic tasks.

Journal: Neuroscience of consciousness

Authors' code: OSF 5fehs (no license)

Status: code verified, 3 files readable, 2 matches

[287] doi:10.1117/1.jbo.31.9.095003 [paper]

Development and optical characterization of a multilayered head phantom for optical brain monitoring.

Journal: Journal of biomedical optics

Status: code on request

[288] Code ↔ Paper doi:10.1126/sciadv.adx0731 [paper, repository]

Targeting glial PD-1/PD-L1 restores microglial homeostasis and reduces neuronal hyperactivity in an Alzheimer's disease model.

Journal: Science advances

Authors' code: Zenodo 19411437 (CC-BY-4.0)

Status: code verified, 3 files readable

[289] Code ↔ Paper doi:10.1126/sciadv.aef5358 [paper, repository]

Thalamic modulation of cortical linearity across arousal states.

Journal: Science advances

Authors' code: Zenodo 19905547 (CC-BY-4.0)

Status: code verified, 2 files readable

[290] doi:10.1126/sciadv.aef7492 [paper, data]

Real-time, cross-modal genotype mapping of free-moving <i>Drosophila</i> larvae via simultaneous mechano-electrophysiological recording.

Journal: Science advances

Status: data only, 1 dataset cited

[291] Code ↔ Paper doi:10.1523/eneuro.0283-26.2026 [paper, repository]

A Cortico-Basal Ganglia-Thalamic Network Model Linking Intermittent Postural Control to Sway-Related Beta-Band Oscillations.

Journal: eNeuro

Authors' code: nomura-taishin/cbgt-intermittent-postural-control (Apache-2.0)

Status: code verified, 12 files readable, 4 matches

[292] Code ↔ Paper doi:10.7554/elife.100880 [paper, repository]

An applicable and efficient retrograde monosynaptic circuit mapping tool for larval zebrafish.

Journal: eLife

Authors' code: navis-org/navis (GPL-3.0), soaringdu/Proj-RVCT (no license)

Status: code verified, 305 files readable, 1 match

Thursday, 17 September 2026 (7 papers)

[293] Code ↔ Paper doi:10.1007/s00422-026-01063-3 [paper, repository]

Increased firing rates monotonically expand neuronal coding bandwidth.

Journal: Biological cybernetics

Authors' code: bendalab/punitmodel (GPL-3.0), doi.gin.g-node.org/10.12751/g-node.5b08du (no license)

Status: code verified, 11 files readable, 10 matches

[294] doi:10.1007/s12031-026-02598-7 [paper, data]

A Lipoylation-PDH-TCA Transcriptional Deficit in the Alzheimer's Disease Cortex - Donor-level Multi-cohort Evidence with Neuronal-composition, Disease-specificity and Matched-null Controls.

Journal: Journal of molecular neuroscience : MN

Status: data only, 1 dataset cited

[295] doi:10.1038/s41467-026-77508-x [paper, data]

Structures of the volume-regulated anion channel LRRC8A/D in activating and inhibiting conditions.

Journal: Nature communications

Status: data only, 4 datasets cited

[296] Code ↔ Paper doi:10.1038/s41514-026-00439-w [paper, repository]

Effects of a three-month exercise programme on cognition, mood and neurogenesis: the NeuroFit randomised controlled trial.

Journal: npj aging

Authors' code: thuretlabkcl/NeuroFit-RCT-Statistical-Code (MIT)

Status: code verified, 5 files readable, 1 match

[297] Code ↔ Paper doi:10.1162/imag.a.1362 [paper, repository]

Human fMRI at 11.7T: Assessing feasibility, stability, and reliability on the Iseult scanner.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: Zaineb18/tristan_pipeline (MIT)

Status: code verified, 44 files readable, 11 matches

[298] doi:10.1371/journal.pdig.0001665 [paper, data]

Inflammation is associated with altered functional connectivity of the cingulate cortex in individuals with subthreshold depression.

Journal: PLOS digital health

Status: data only, 1 dataset cited

[299] Code ↔ Paper doi:10.1371/journal.pone.0356243 [paper, repository]

Functional organization and natural scene responses across mouse visual cortical areas revealed with encoding manifolds.

Journal: PloS one

Authors' code: dyballa/NeuralEncodingManifolds (BSD-2-Clause)

Status: code verified, 28 files readable, 18 matches

Wednesday, 16 September 2026 (12 papers)

[300] Code ↔ Paper doi:10.1002/advs.77822 [paper, repository]

Temporal Trajectories of the Tau Aggregate Interactome Reveal Stage-Specific Vulnerabilities in Alzheimer's Disease.

Journal: Advanced science (Weinheim, Baden-Wurttemberg, Germany)

Authors' code: Zenodo 17990783 (MIT), dboeken/boeken_tau_aggregate_interactome (MIT)

Status: code verified, 19 files readable, 2 matches

[301] Code ↔ Paper doi:10.1007/s12021-026-09784-3 [paper, repository]

Estimating Mutual Information and Pearson Correlation on Neural Evoked Responses.

Journal: Neuroinformatics

Authors' code: AaltoImagingLanguage/micorr (GPL-3.0)

Status: code verified, 29 files readable, 1 match

[302] Code ↔ Paper doi:10.1007/s12021-026-09817-x [paper, repository]

Circle of Willis-Guided Localization for Simultaneous Detection and Classification of Large Vessel Occlusions in Brain CTA.

Journal: Neuroinformatics

Authors' code: MIC-DKFZ/nnDetection (no license), NIC-VICOROB/CoW-multiclass-segmentation-TopCoW24 (no license)

Status: code verified, 740 files readable, 2 matches

[303] doi:10.1038/s41377-026-02416-0 [paper, data]

Gigavoxel-scale multiple-scattering-aware lensless holotomography.

Journal: Light, science & applications

Status: data only, 1 dataset cited

[304] Code ↔ Paper doi:10.1038/s41531-026-01531-4 [paper, repository]

Inconsistent subthalamic local field potential beta activity amid in- and antiphasic neuronal bursts.

Journal: NPJ Parkinson's disease

Authors' code: MaximilianScherer/2026_MS_beta_prevalence (no license), Zenodo 17951551 (CC-BY-4.0), Zenodo 17940236 (CC-BY-4.0)

Status: code verified, 72 files readable, 3 matches

[305] Code ↔ Paper doi:10.1038/s42003-026-10957-8 [paper, repository]

Brain defence by the extracellular matrix protein Cochlin.

Journal: Communications biology

Authors' code: animesh/scripts (GPL-2.0), Raghumoy/Cochlin_manuscript (no license)

Status: code verified, 1,156 files readable, 9 matches

[306] doi:10.1186/s40035-026-00577-x [paper, data]

Brain region-resolved pharmacodynamics of an antisense oligonucleotide targeting human SNCA 3'UTR in BAC-hSNCA rats.

Journal: Translational neurodegeneration

Status: data only, 3 datasets cited

[307] Code ↔ Paper doi:10.1371/journal.pcbi.1014752 [paper, repository]

Hierarchical feature binding in a spiking neural network model of the primate ventral visual pathway.

Journal: PLoS computational biology

Authors' code: BCGardner/feature_binding (AGPL-3.0)

Status: code verified, 187 files readable, 18 matches

[308] doi:10.1371/journal.ppat.1014603 [paper, data]

Analysis of host and viral nascent and steady-state RNA levels in a human neuronal model of herpes simplex virus 1 infection.

Journal: PLoS pathogens

Status: data only, 1 dataset cited

[309] Code ↔ Paper doi:10.2147/jir.s633117 [paper, repository]

Single-Nucleus Transcriptomic Mapping Reveals Correlative Microglial Changes Associated with rTMS in the Motor Cortex After Spinal Cord Injury.

Journal: Journal of inflammation research

Authors' code: 10XGenomics/cellranger (MIT)

Status: code verified, 789 files readable, 2 matches

[310] doi:10.34133/research.1427 [paper]

Altered Hierarchical Visual Rhythm Tracking in Early Deafness.

Journal: Research (Washington, D.C.)

Status: code on request

[311] Code ↔ Paper doi:10.7554/elife.101204 [paper, repository]

Larger language models better align with neural representations of natural language.

Journal: eLife

Authors' code: hassonlab/247-pickling (no license), hassonlab/247-encoding (MIT)

Status: code verified, 29 files readable, 4 matches

Tuesday, 15 September 2026 (9 papers)

[312] Code ↔ Paper doi:10.1038/s41467-026-76109-y [paper, repository]

Assistive algorithms influence neural representations in motor brain-computer interfaces.

Journal: Nature communications

Authors' code: pavi-rajes/assistive-sensory-motor-perturbations-influence-learned-neural-representations (no license)

Status: code verified, 53 files readable, 11 matches

[313] Code ↔ Paper doi:10.1038/s44271-026-00524-6 [paper, repository]

Emergent blink rate in early childhood is associated with neural origins of executive function.

Journal: Communications psychology

Authors' code: OSF mrz89 (no license)

Status: code verified, 3 files readable, 6 matches

[314] Code ↔ Paper doi:10.1162/imag.a.1352 [paper, repository]

Brain-age in ultra-low-field MRI: How well does it work?

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: james-cole/brainageR (LGPL-3.0), Zenodo 3476365 (other-open), LemuelPuglisi/SynthBA (no license)

Status: code verified, 15 files readable, 2 matches

[315] doi:10.1186/s12348-026-00638-2 [paper, data]

Putative mechanisms of ocular inflammation in syphilis.

Journal: Journal of ophthalmic inflammation and infection

Status: data only, 1 dataset cited

[316] doi:10.1186/s13293-026-00982-x [paper, data]

Sex differences in ferroptosis-related vulnerability to autism-like deficits in the adolescent medial prefrontal cortex following embryonic valproic acid exposure.

Journal: Biology of sex differences

Status: data only, 1 dataset cited

[317] doi:10.1212/wnl.0000000000218502 [paper]

Retinal Optical Coherence Tomography-Angiography and Longitudinal Changes in Cognition and Cerebral Small Vessel Disease.

Journal: Neurology

Status: code on request

[318] Code ↔ Paper doi:10.1371/journal.pcbi.1014152 [paper, repository]

Synchronization properties in C. elegans: Relating behavioral circuits to structural and functional neuronal connectivity.

Journal: PLoS computational biology

Authors' code: gourab-sar/C-elegans-synchronization (no license)

Status: code verified, 24 files readable, 7 matches

[319] Code ↔ Paper doi:10.7554/elife.108950 [paper, repository]

Comprehensive RNA velocity by modeling the cascade of gene regulation, transcription, and splicing from single-cell RNA sequencing data with TSvelo.

Journal: eLife

Authors' code: lijc0804/TSvelo (MIT), elenasabbioni/bayvel_notebooks (no license)

Status: code verified, 37 files readable, 8 matches

[320] Code ↔ Paper doi:10.7554/elife.109571 [paper, repository]

Rank- and threat-dependent social modulation of innate defensive behaviors.

Journal: eLife

Authors' code: YatangLiLab/Gao-2026-rank-threat-soical-modulation (Apache-2.0)

Status: code verified, 3 files readable

Monday, 14 September 2026 (4 papers)

[321] Code ↔ Paper doi:10.1038/s41467-026-77800-w [paper, repository]

Learning reorganizes dendritic and stabilizes axon initial segment inhibitory synapses in CA1 pyramidal neurons.

Journal: Nature communications

Authors' code: codeocean:9762429 (no license)

Status: code found, still to be checked

[322] doi:10.1038/s42003-026-10802-y [paper]

Transcriptome of fetal cortex of tree shrew underlying the emergence of outer subventricular zone.

Journal: Communications biology

Status: code on request

[323] Code ↔ Paper doi:10.1038/s43587-026-01207-x [paper, repository]

A microprotein atlas of the human frontal cortex in Alzheimer's disease.

Journal: Nature aging

Authors' code: huggingface.co/spaces/brmiller/brain-microprotein-atlas-app (MIT), brendan-miller-salk/brain-microprotein-atlas (no license)

Status: code verified, 61 files readable, 29 matches

[324] doi:10.1080/19490976.2026.2726620 [paper, data]

Integrated metagenomic and metabolomic analysis identifies severity-specific inflammatory and metabolic signatures in post-stroke depression.

Journal: Gut microbes

Status: data only, 2 datasets cited

Sunday, 13 September 2026 (1 paper)

[325] doi:10.1113/jp290864 [paper, data]

Heart failure-induced reprogramming of salt-evoked neurovascular coupling in the rat hypothalamus.

Journal: The Journal of physiology

Status: data only, 1 dataset cited

Saturday, 12 September 2026 (5 papers)

[326] doi:10.1016/j.isci.2026.117510 [paper, data]

Single-cell transcriptomic atlas of the human fetal uveal tract reveals heterogeneity in melanocyte populations.

Journal: iScience

Status: code on request, 1 dataset cited

[327] doi:10.1016/j.ynirp.2026.100405 [paper, data]

White matter microstructure and motor function in amnestic mild cognitive impairment and Alzheimer's dementia.

Journal: Neuroimage. Reports

Status: data only, 1 dataset cited

[328] doi:10.1080/01652176.2026.2720640 [paper, data]

Evaluation of a 0.05 T low-field MRI system for canine brain imaging via comparison with images acquired at 1.5 T field strength: a pilot cadaver study.

Journal: The veterinary quarterly

Status: data only, 2 datasets cited

[329] Code ↔ Paper doi:10.1093/braincomms/fcag351 [paper, repository]

Time-resolved aperiodic dynamics in event segmentation in attention-deficit/hyperactivity disorder.

Journal: Brain communications

Authors' code: OSF wexfp (no license)

Status: code verified, 12 files readable, 9 matches

[330] doi:10.1113/ep094110 [paper, data]

Stretch versus shortening contractions subsequently decrease versus increase neural drive to the human tibialis anterior.

Journal: Experimental physiology

Status: data only, 1 dataset cited

Friday, 11 September 2026 (21 papers)

[331] doi:10.1007/s10548-026-01249-9 [paper, data]

What Static Connectivity Misses: Dynamic Alpha-Band Brain Network States in First-Episode Psychosis.

Journal: Brain topography

Status: code on request, 2 datasets cited

[332] Code ↔ Paper doi:10.1038/s41598-026-68186-2 [paper, repository]

NeuroStream: spectral-spatio-temporal deep learning for visual stimulus classification from EEG.

Journal: Scientific reports

Authors' code: aim97/Visual-brain-study (GPL-3.0)

Status: code verified, 59 files readable, 10 matches

[333] doi:10.1038/s43587-026-01204-0 [paper, data]

Fibronectin mediates APOE4-driven blood-brain barrier dysfunction in Alzheimer's disease.

Journal: Nature aging

Status: data only, 2 datasets cited

[334] Code ↔ Paper doi:10.1073/pnas.2608511123 [paper, repository]

Facial palsy reveals the sensorimotor contribution to facial-emotion recognition.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: OSF 3yux4 (no license)

Status: code verified, 4 files readable, 2 matches

[335] doi:10.1073/pnas.2620112123 [paper, data]

Direct activation of SARM1 by dsDNA is not supported by biochemical and cellular evidence.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 1 dataset cited

[336] doi:10.1080/21505594.2026.2721762 [paper, data]

Identification of a mechanical signaling pathway activating type 1 fimbriae via a ZraSR two-component system in neonatal meningitis-associated <i>Escherichia coli</i>.

Journal: Virulence

Status: data only, 2 datasets cited

[337] Code ↔ Paper doi:10.1093/braincomms/fcag333 [paper, repository]

Development and application of a multi-task fusion model using susceptibility-weighted imaging-based substantia nigra and adjacent structures for prognostic prediction of subthalamic nucleus deep brain stimulation in Parkinson's disease.

Journal: Brain communications

Authors' code: ceasorcai/PD (no license)

Status: code verified, 3 files readable, 2 matches

[338] Code ↔ Paper doi:10.1126/sciadv.aeb8889 [paper, repository]

Diverse ancestral myosin motors generate and segregate distinct types of nanocluster-rich domains at the plasma membrane.

Journal: Science advances

Authors' code: Zenodo 21241290 (no license)

Status: dead link

[339] Code ↔ Paper doi:10.1126/sciadv.aec4911 [paper, repository]

Dendritic shaft constrictions shape synaptic integration in neurons.

Journal: Science advances

Authors' code: tonykelly00/DSC_model (no license), tonykelly00/DSC_morphology_pipeline (no license)

Status: code verified, 35 files readable, 4 matches

[340] Code ↔ Paper doi:10.1126/sciadv.aec6658 [paper, repository]

A unifying principle of chromatic coding across biological and artificial systems.

Journal: Science advances

Authors' code: Zenodo 20954249 (CC-BY-4.0)

Status: code verified

[341] Code ↔ Paper doi:10.1126/sciadv.aec9291 [paper, repository]

Computational mechanisms of perception in autism revealed using games inspired by rodent operant tasks.

Journal: Science advances

Authors' code: Zenodo 16998131 (CC0-1.0), Zenodo 20545339 (CC-BY-4.0), ratacad/geode_data (CC0-1.0), ratacad/geode (no license)

Status: code verified, 388 files readable, 9 matches

[342] doi:10.1126/sciadv.aeg1157 [paper, data]

A simple, anesthesia-free infusion technique for in vivo metabolic tracing.

Journal: Science advances

Status: data only, 1 dataset cited

[343] doi:10.1126/sciadv.aeg2327 [paper, data]

Top-down corticostriatal control of adaptive restraint during motivational conflict.

Journal: Science advances

Status: data only, 1 dataset cited

[344] doi:10.1155/humu/4225263 [paper, data]

The Charcot-Marie-Tooth Neuropathy (CMTX3) Complex Structural Variation Causes Differential SOX3 Spatiotemporal Expression.

Journal: Human mutation

Status: data only, 1 dataset cited

[345] Code ↔ Paper doi:10.1162/imag.a.1360 [paper, repository]

A dual-fMRI investigation of interpersonal emotion regulation: Predicting strategy selection and implementation success from effective brain connectivity.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: OSF 8hmrq (no license)

Status: code verified, 4 files readable

[346] Code ↔ Paper doi:10.1162/imag.a.1366 [paper, repository]

MICAFlow: Fast and robust MRI preprocessing bridging research neuroimaging and clinical practice.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: MICA-MNI/MICAFlow (GPL-3.0), mica-mni.github.io/micaflow (no license), MICA-MNI/MICAFlow-Models (no license), MICA-MNI/LAMAReg (MIT), MICA-MNI/LAMAR-Models (no license)

Status: code verified, 94 files readable, 17 matches

[347] doi:10.1177/11795735261488260 [paper]

Causal Effects of Gut Microbiota on Morning Chronotype, Insomnia and Sleep Duration: A Two-Sample Mendelian Randomization Study.

Journal: Journal of central nervous system disease

Status: code on request

[348] doi:10.1186/s12974-026-03970-5 [paper, data]

Estrogen deprivation exacerbates Alzheimer's disease pathology through neuronal CTSS signaling.

Journal: Journal of neuroinflammation

Status: data only, 1 dataset cited

[349] Code ↔ Paper doi:10.1371/journal.pone.0358044 [paper, repository]

An exploratory fNIRS study on directional asymmetry in segmental discrimination: Lateral-rhotic (/la-ra/) and labial-dorsal (/ba-ga/) contrasts tested in 5- and 9-month-old Japanese infants.

Journal: PloS one

Authors' code: OSF xh6pm (no license)

Status: code verified, 5 files readable, 4 matches

[350] doi:10.1523/eneuro.0183-26.2026 [paper]

Visual-Semantic Tuning across the Cortex Shifts between Tasks.

Journal: eNeuro

Status: code on request

[351] Code ↔ Paper doi:10.1523/eneuro.0328-25.2026 [paper, repository]

Objective Neural Markers of Identity Familiarization via Passive Exposure and Fast Periodic Visual Stimulation EEG.

Journal: eNeuro

Authors' code: OSF 3gxu4 (no license)

Status: empty repository

Thursday, 10 September 2026 (11 papers)

[352] Code ↔ Paper doi:10.1016/j.bbih.2026.101351 [paper, repository]

Associations between chronic placental inflammation, fetal brain development and later autism traits.

Journal: Brain, behavior, & immunity - health

Authors' code: Zenodo 14051966 (CC-BY-4.0), wheelocklab/networklevelanalysis (MIT)

Status: code verified, 197 files readable, 1 match

[353] doi:10.1093/braincomms/fcag341 [paper]

Distinct and shared multimodal neuroimaging patterns in clinical frontotemporal dementia syndromes.

Journal: Brain communications

Status: code on request

[354] doi:10.1111/joa.70225 [paper]

Immune proteomic associations with indices of cortical development in 5-year-old children.

Journal: Journal of anatomy

Status: code on request

[355] doi:10.1162/imag.a.1356 [paper]

Sources of the N15 TMS-evoked potential following motor cortex stimulation localize rostrals to TMS-induced electric fields and depend on dose.

Journal: Imaging neuroscience (Cambridge, Mass.)

Status: code on request

[356] doi:10.1162/imag.a.1357 [paper]

Biphasic acclimation for simultaneous wide-field fluorescent Ca<sup>2+</sup> imaging and fMRI of awake mice.

Journal: Imaging neuroscience (Cambridge, Mass.)

Status: code on request

[357] doi:10.1162/imag.a.1358 [paper, data]

Spatial covariance of mGluR5 density and structural degeneration in behavioral variant frontotemporal degeneration.

Journal: Imaging neuroscience (Cambridge, Mass.)

Status: data only, 1 dataset cited

[358] Code ↔ Paper doi:10.1162/imag.a.1363 [paper, repository]

Social approach-avoidance conflict: Behavioural, emotional, and neural correlates along a depression-social anxiety spectrum.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: OSF uq837 (no license)

Status: code verified, 18 files readable, 2 matches

[359] Code ↔ Paper doi:10.1371/journal.pbio.3003959 [paper, repository]

Recurrent synapses between CO2-sensitive olfactory sensory neurons enable robust CO2 detection in Aedes aegypti mosquitoes.

Journal: PLoS biology

Authors' code: htem/aedes_public (GPL-3.0), Zenodo 21403889 (GPL-3.0)

Status: code verified, 142 files readable, 4 matches

[360] Code ↔ Paper doi:10.1371/journal.pcbi.1013752 [paper, repository]

Calmodulin controls spatial and temporal specificity of calcium-induced calcium release.

Journal: PLoS computational biology

Authors' code: asiaszmek/stochastic_ER (CC-BY-4.0)

Status: code verified, 39 files readable, 2 matches

[361] Code ↔ Paper doi:10.1371/journal.pone.0355902 [paper, repository]

Pericyte-derived cancer-associated fibroblasts correlate with poor survival and are enriched after chemoradiotherapy in glioblastoma.

Journal: PloS one

Authors' code: neuropromotion/CAFs-in-glioblastoma-microenvironment (no license)

Status: code verified, 12 files readable, 5 matches

[362] doi:10.1371/journal.pone.0356617 [paper, data]

Lithium isotope effects and magnetic interactions in flavin-ascorbyl radical pairs.

Journal: PloS one

Status: data only, 1 dataset cited

Wednesday, 9 September 2026 (17 papers)

[363] Code ↔ Paper doi:10.1002/advs.77419 [paper, repository]

Early Spatial and Contextual Coding Deficits in Hippocampal CA1 Precede Performance Decline in an Alzheimer's Disease Model.

Journal: Advanced science (Weinheim, Baden-Wurttemberg, Germany)

Authors' code: doi:10.5061/dryad.z34tmpgwr (no license)

Status: code verified

[364] doi:10.1007/s12640-026-00825-y [paper, data]

Atorvastatin Shows Limited Disease-Modifying Effects in an A53T α-Synuclein Mouse Model of Parkinson's Disease.

Journal: Neurotoxicity research

Status: data only, 1 dataset cited

[365] doi:10.1016/j.isci.2026.117445 [paper]

Neural correlates of information gain during search revealed by fMRI.

Journal: iScience

Status: code on request

[366] Code ↔ Paper doi:10.1016/j.isci.2026.117446 [paper, repository]

Volume-inflation registration (INFREG) for morphometric analysis of human focal cortical dysplasia type II.

Journal: iScience

Authors' code: ifsunrise/brain-inflate-registration (no license), ai-med/Vox2Cortex (GPL-3.0)

Status: code verified, 81 files readable, 2 matches

[367] doi:10.1016/j.isci.2026.117487 [paper, data]

Endothelial SLC38A2 controls brain D-serine homeostasis and synapse development.

Journal: iScience

Status: code on request, 1 dataset cited

[368] Code ↔ Paper doi:10.1016/j.isci.2026.117492 [paper, repository]

Neural subspace reorganization reflects value-based decision-making.

Journal: iScience

Authors' code: hdl1115/wmUpdate (no license)

Status: code verified, 5 files readable, 3 matches

[369] Code ↔ Paper doi:10.1016/j.xpro.2026.104833 [paper, repository]

Protocol for mapping frequency-specific information transfer between cortical areas using ECoG and Granger causality.

Journal: STAR protocols

Authors' code: Zenodo 21380181 (CC-BY-4.0)

Status: code verified

[370] Code ↔ Paper doi:10.1073/pnas.2614077123 [paper, repository]

Resolving cell lineages and gene functions in the developing mouse gastrointestinal tract using in utero transduction.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: UMarklundLab/Inutero_clonaltracing_E16Gut (MIT)

Status: code verified, 21 files readable, 8 matches

[371] Code ↔ Paper doi:10.1126/sciadv.adq8840 [paper, repository]

Astrocytes mediate the dopaminergic modulation of tonic GABAergic signaling in substantia nigra.

Journal: Science advances

Authors' code: Zenodo 10855006 (CC-BY-4.0), Zenodo 17296457 (CC-BY-4.0)

Status: code verified, 1 file readable

[372] doi:10.1126/sciadv.aeb1237 [paper, data]

Magnetically actuated nanoantennas for wireless glioblastoma therapy.

Journal: Science advances

Status: data only, 1 dataset cited

[373] Code ↔ Paper doi:10.1126/sciadv.aeb4205 [paper, repository]

Learning stochastic dynamics and cell-fate landscapes from single-cell snapshots via optimal transport.

Journal: Science advances

Authors' code: allonkleinlab/paper-data (no license), liujuntan/DiffusionOT (MIT), Zenodo 18251638 (CC-BY-4.0)

Status: code verified, 46 files readable, 9 matches

[374] Code ↔ Paper doi:10.1126/sciadv.aee9425 [paper, repository]

Probabilistic inference of homonymous and heteronymous recurrent inhibition in human muscles from large-scale motor neuron recordings.

Journal: Science advances

Authors' code: FrancoisDernoncourt/Mapping_Recurrent_Inhibition (MIT)

Status: code verified, 15 files readable, 21 matches

[375] Code ↔ Paper doi:10.1162/imag.a.1359 [paper, repository]

Distinct roles of brain network flexibility in motor learning across age.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: OSF 3fc94 (no license)

Status: code verified, 5 files readable

[376] Code ↔ Paper doi:10.1371/journal.pbio.3003927 [paper, repository]

Brain structural and functional connectivity converge prenatally but diverge after birth.

Journal: PLoS biology

Authors' code: Zenodo 21316924 (CC-BY-4.0), brainlife/BCT (MIT)

Status: code verified, 140 files readable, 4 matches

[377] doi:10.1371/journal.pone.0347189 [paper, data]

Design and validation of a modular smart headband with embroidered electrodes for comfortable EEG monitoring.

Journal: PloS one

Status: data only, 1 dataset cited

[378] Code ↔ Paper doi:10.1371/journal.pone.0355826 [paper, repository]

Patent license prediction using deep survival analysis: A comparative study.

Journal: PloS one

Authors' code: takaoarai/PatentLicensePrediction (MIT)

Status: code verified, 10 files readable, 11 matches

[379] Code ↔ Paper doi:10.1523/jneurosci.2178-25.2026 [paper, repository]

Increased Attentive Use Is Linked to More Idiosyncratic Functional Connections.

Journal: The Journal of neuroscience : the official journal of the Society for Neuroscience

Authors' code: OSF g42yd (no license)

Status: empty repository

Tuesday, 8 September 2026 (23 papers)

[380] doi:10.1002/advs.77551 [paper]

Targeting the KAT7/H3K14ac/RAC2 Axis Mediates OXPHOS to Promote Stemness Maintenance and Malignancy in Glioblastoma.

Journal: Advanced science (Weinheim, Baden-Wurttemberg, Germany)

Status: data only

[381] doi:10.1002/gps3.70047 [paper]

Neurophysiological subtyping of schizophrenia reveals a reproducible phenotype with temporoparietal circuit disruptions.

Journal: General psychiatry

Status: code on request

[382] Code ↔ Paper doi:10.1007/s12021-026-09815-z [paper, repository]

BasNet: Attention U-Net-Based Automated Axon Segmentation in Bielschowsky Silver-Stained Histology.

Journal: Neuroinformatics

Authors' code: Zenodo 19455087 (MIT), lukasschoenenberger/basnet (MIT)

Status: code verified, 28 files readable, 15 matches

[383] doi:10.1016/j.bbrep.2026.102782 [paper, data]

Selective under-representation of transcripts encoding membrane-integrated architectures following neural tissue vitrification.

Journal: Biochemistry and biophysics reports

Status: data only, 1 dataset cited

[384] doi:10.1016/j.isci.2026.117467 [paper, data]

Larval taste exposure creates compound-specific behavioral modifications in adult <i>Drosophila melanogaster</i>.

Journal: iScience

Status: code on request, 1 dataset cited

[385] doi:10.1016/j.isci.2026.117476 [paper]

Integrated 3D light sheet and 2D multiplex imaging for deep histological characterization of somatic mouse glioblastoma.

Journal: iScience

Status: code on request

[386] Code ↔ Paper doi:10.1038/s41588-026-02737-1 [paper, repository]

Human and mouse adrenal glands are characterized by species-specific steroidogenic states and tissue turnover.

Journal: Nature genetics

Authors' code: artem-artemov/adrenal (no license), MaksimovDenis/adrenalglandscatlas (MIT), Zenodo 20258071 (CC-BY-4.0)

Status: code verified, 7 files readable, 8 matches

[387] doi:10.1038/s41598-026-68506-6 [paper, data]

Frequency-aware transformer networks for robust and generalizable EEG-based seizure detection.

Journal: Scientific reports

Status: data only, 1 dataset cited

[388] doi:10.1073/pnas.2604933123 [paper, data]

Neuromotor modules revealed by direct electrical stimulation of the human primary motor cortex.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 1 dataset cited

[389] doi:10.1073/pnas.2619143123 [paper, data]

Cell-type-specific circadian and light-responsive transcriptional dynamics in adult <i>Drosophila</i> neurons.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 1 dataset cited

[390] Code ↔ Paper doi:10.1093/braincomms/fcag318 [paper, repository]

Antenatal maternal anaemia and infant brain structure: high-field (3 T) and ultra-low-field (64 mT) MRI findings from South Africa.

Journal: Brain communications

Authors' code: UNITY-Physics (no license), UNITY-Physics/fw-minimorph (MIT), JERingshaw/Khula-Anaemia-Imaging-Analysis (no license)

Status: code verified, 15 files readable, 9 matches

[391] Code ↔ Paper doi:10.1093/braincomms/fcag323 [paper, repository]

Induced epileptic seizures in larval zebrafish reveal a synaptic modulation associated with the post-ictal state.

Journal: Brain communications

Authors' code: OSF sd5jy (no license)

Status: code verified, 24 files readable, 5 matches

[392] Code ↔ Paper doi:10.1162/imag.a.1336 [paper, repository]

Brain network dynamics in the wake-sleep transition reorganize according to task engagement.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: OSF nua4y (no license)

Status: empty repository

[393] doi:10.1162/imag.a.1340 [paper, data]

Biophysical simulations of fMRI responses using realistic microvascular models: Insights into distinct hemodynamics in humans and mice.

Journal: Imaging neuroscience (Cambridge, Mass.)

Status: data only, 1 dataset cited

[394] doi:10.1162/imag.a.1345 [paper, data]

Causal evidence for dorsal stream involvement in object shape recognition: A tractography-guided ccPAS Registered Report study.

Journal: Imaging neuroscience (Cambridge, Mass.)

Status: data only, 1 dataset cited

[395] Code ↔ Paper doi:10.1162/imag.a.1350 [paper, repository]

Clarifying and extending permutation tests on brain map correspondence through mixed-effects modeling.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: spin-test/spin-test (MIT), frantisekvasa/rotate_parcellation (MIT), qcwang77/brainmap-bootstrap (no license)

Status: code verified, 103 files readable, 2 matches

[396] Code ↔ Paper doi:10.1162/imag.a.1355 [paper, repository]

Taming dimensionality in big neuroimaging data: Efficient orthonormal projective NMF via stochastic learning and data compression.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: sotiraslab/csopNMF (Apache-2.0)

Status: code verified, 9 files readable, 2 matches

[397] Code ↔ Paper doi:10.1371/journal.pcbi.1014701 [paper, repository]

Computer models predict differential dendritic vulnerability with ischemia and spreading depression.

Journal: PLoS computational biology

Authors' code: modeldb:244688 (no license), modeldb:185858 (no license), modeldb:2017004 (no license)

Status: code verified

[398] Code ↔ Paper doi:10.1371/journal.pgen.1012126 [paper, repository]

FM-GPT: Bayesian fine mapping for phenome-wide transcriptome-wide association studies.

Journal: PLoS genetics

Authors' code: tacanida/fm-gpt (no license)

Status: code verified, 10 files readable, 2 matches

[399] Code ↔ Paper doi:10.1371/journal.pone.0357448 [paper, repository]

Anatomy-aware, label-informed approach improves image registration for challenging datasets.

Journal: PloS one

Authors' code: raroston/labelImageRegistration_Comparison (no license)

Status: code verified, 8 files readable, 3 matches

[400] Code ↔ Paper doi:10.1523/eneuro.0069-26.2026 [paper, repository]

Electrophysiological Indices of Hierarchical Speech Processing Differentially Reflect the Comprehension of Speech in Noise.

Journal: eNeuro

Authors' code: OSF a285v (no license)

Status: code verified, 8 files readable, 7 matches

[401] doi:10.7554/elife.106992 [paper, data]

Cortical layer 6b mediates state-dependent changes in brain activity and effects of orexin on waking and sleep.

Journal: eLife

Status: data only, 4 datasets cited

[402] Code ↔ Paper doi:10.7554/elife.108021 [paper, repository]

BetaII-spectrin gaps and patches emerge from the patterned assembly of the actin/spectrin membrane skeleton in human motor neuron axons.

Journal: eLife

Authors' code: cibion-conicet/Gollum (GPL-3.0)

Status: code verified, 15 files readable, 1 match

Monday, 7 September 2026 (7 papers)

[403] doi:10.1002/advs.77165 [paper, data]

Perceived Time Shapes Physical Fatigue Accumulation and Its Neural Oscillatory Correlates.

Journal: Advanced science (Weinheim, Baden-Wurttemberg, Germany)

Status: data only, 1 dataset cited

[404] Code ↔ Paper doi:10.1016/j.isci.2026.117459 [paper, repository]

Behavioral states affect eye position tuning in the parietal cortex of macaques.

Journal: iScience

Authors' code: francescovaccari/NeuralDataAnalysis_MATLAB (BSD-3-Clause)

Status: code verified, 28 files readable, 9 matches

[405] Code ↔ Paper doi:10.1093/braincomms/fcag343 [paper, repository]

Long-term brain volume trajectories and lifestyle associations in cognitively normal adults: the BRAIN-STRIDE study.

Journal: Brain communications

Authors' code: Zenodo 20819668 (MIT)

Status: code verified, 4 files readable, 4 matches

[406] doi:10.1117/1.jbo.31.9.095001 [paper]

Generalized self-calibrating probe approach for CW tissue oximetry.

Journal: Journal of biomedical optics

Status: code on request

[407] doi:10.1186/s13062-026-00912-2 [paper, data]

Integrated analysis of single-cell transcriptome identifies a glial-neurovascular signaling trajectory in brain repair after ischemia.

Journal: Biology direct

Status: data only, 1 dataset cited

[408] doi:10.3390/s26175684 [paper, data]

Neurophysiological Characterization of ADHD in Children Using EEG Signals: A Machine Learning Approach to Executive Function Networks.

Journal: Sensors (Basel, Switzerland)

Status: data only, 1 dataset cited

[409] Code ↔ Paper doi:10.7554/elife.110795 [paper, repository]

REM sleep prefrontal high-frequency oscillation chains mediate distinct cortical - hippocampal reactivation patterns compared to NREM sleep.

Journal: eLife

Authors' code: JadhavLab/REMHFOs (MIT)

Status: code verified, 41 files readable, 34 matches

Sunday, 6 September 2026 (5 papers)

[410] doi:10.1002/advs.202520408 [paper]

Innate Immunocompetent hiPSC-Derived Neurospheroids Capture Early CNS Responses to rAAV.

Journal: Advanced science (Weinheim, Baden-Wurttemberg, Germany)

Status: data only

[411] Code ↔ Paper doi:10.1002/mco2.70980 [paper, repository]

An Intraoperative EEG Biomarker for Postoperative Delirium Predicting Based on Interpretable Deep Learning Framework.

Journal: MedComm

Authors' code: ncclab-sustech/POD-biomarker (no license)

Status: code verified, 14 files readable, 8 matches

[412] Code ↔ Paper doi:10.1016/j.nicl.2026.104057 [paper, repository]

Tensor-derived diffusion MRI metrics and NODDI in multiple sclerosis classification.

Journal: NeuroImage. Clinical

Authors' code: Zenodo 20512670 (CC-BY-4.0)

Status: code verified

[413] doi:10.1113/ep093541 [paper]

Mechanical pressure on endothelial cells mediates remote ischaemic preconditioning-induced neuroprotection via miR-126.

Journal: Experimental physiology

Status: data only

[414] doi:10.3390/s26175661 [paper]

GMoE-AD: Generalized Hyperspectral Anomaly Detection via Mixture-of-Experts and Domain-Invariant Learning.

Journal: Sensors (Basel, Switzerland)

Status: code on request

Saturday, 5 September 2026 (7 papers)

[415] Code ↔ Paper doi:10.1002/epi4.70336 [paper, repository]

Quantifying extra-lesional interhemispheric cortical asymmetry in focal cortical dysplasia type II.

Journal: Epilepsia open

Authors' code: faezeheidari/FCD_Asymmetry (MIT)

Status: code verified, 3 files readable, 2 matches

[416] Code ↔ Paper doi:10.1016/j.ebiom.2026.106469 [paper, repository]

Residential early-life air pollution exposure and oculomotor markers of cognitive workload in children: a prospective birth cohort study.

Journal: EBioMedicine

Authors' code: Limburgsgeboortecohort/Residential-air-pollution-oculomotor-markers (no license)

Status: code verified, 13 files readable, 9 matches

[417] doi:10.1016/j.eclinm.2026.104191 [paper]

Steroid, thiamine, and ascorbic acid for comatose out-of-hospital cardiac arrest survivors (STAR): a randomised, placebo-controlled, phase 2 trial.

Journal: EClinicalMedicine

Status: code on request

[418] Code ↔ Paper doi:10.1038/s41467-026-77377-4 [paper, repository]

Ternary Neurexin-T178-PTPR complexes represent a pre-synaptic core-module of neuronal synapse organization.

Journal: Nature communications

Authors' code: phys2/belki (GPL-3.0)

Status: code verified, 98 files readable, 3 matches

[419] Code ↔ Paper doi:10.1093/nc/niag046 [paper, repository]

Awareness of being: a computational neurophenomenological model of mindfulness, mind-wandering, and meta-attentional control.

Journal: Neuroscience of consciousness

Authors' code: h-idei/mbhrnn (Apache-2.0)

Status: code verified, 6 files readable

[420] Code ↔ Paper doi:10.21769/bioprotoc.5801 [paper, repository]

Quantitative Analysis of Axonal Degeneration and TDP-43 Aggregation in Compartmentalized Human iPSC-Derived Motor Neuron-Myotube Co-cultures.

Journal: Bio-protocol

Authors' code: PerlsonLab/Bioprotocol (MIT)

Status: code verified, 4 files readable

[421] Code ↔ Paper doi:10.3390/diagnostics16172861 [paper, repository]

Microstructural Changes in the Corpus Callosum in Different Forms of Sporadic Age-Related Cerebral Small Vessel Disease.

Journal: Diagnostics (Basel, Switzerland)

Authors' code: mikhail-matrosov/classibundler (no license)

Status: code verified, 15 files readable, 2 matches

Friday, 4 September 2026 (19 papers)

[422] Code ↔ Paper doi:10.1007/s00429-026-03172-y [paper, repository]

Differential effects of acute, chronic, and social defeat stress on microglial morphology in the basolateral and central amygdala, and the medial and lateral habenula.

Journal: Brain structure & function

Authors' code: Jorvalgl/Thresholderer (GPL-3.0)

Status: code verified, 2 files readable

[423] Code ↔ Paper doi:10.1007/s00429-026-03189-3 [paper, repository]

Orchestrating neuroimaging data processing using the 'Snakemake' workflow manager.

Journal: Brain structure & function

Authors' code: unimelbmdap/neuroimaging_containers (no license), khanlab/snakebids (MIT)

Status: code verified, 97 files readable

[424] Code ↔ Paper doi:10.1007/s10548-026-01247-x [paper, repository]

Salience Network Dynamics Across Spontaneous Attacks, Interictal Rest and Interictal Pain Imagery in Menstrually Related Migraine.

Journal: Brain topography

Authors' code: martaxavier/fMRI-Preprocessing (no license), PSYMARKER/leida-matlab (MIT), martaxavier/fmri-preprocessing](https: (no license), psymarker/leida-matlab](https: (no license)

Status: code verified, 82 files readable, 11 matches

[425] doi:10.1016/j.isci.2026.117282 [paper]

Linalool enables reversible immobilization for high-resolution <i>in vivo</i> imaging during regeneration in <i>Schmidtea mediterranea</i>.

Journal: iScience

Status: code on request

[426] doi:10.1016/j.isci.2026.117391 [paper, data]

Context-dependent abstraction of temporal relationships during naturalistic episodic memory.

Journal: iScience

Status: code on request, 1 dataset cited

[427] Code ↔ Paper doi:10.1016/j.isci.2026.117436 [paper, repository]

An auditory "low road" for threat processing in humans sensitive to fast temporal cues.

Journal: iScience

Authors' code: MartinaTrisia/SUBEMOcond (CC-BY-4.0)

Status: code verified, 12 files readable, 3 matches

[428] doi:10.1016/j.ynirp.2026.100402 [paper]

Dopamine D2/3 receptors and functional connectivity during fear extinction: A PET-fMRI study.

Journal: Neuroimage. Reports

Status: code on request

[429] Code ↔ Paper doi:10.1038/s41398-026-04426-3 [paper, repository]

Resting-state brain age is associated with cognitive and sensorimotor abnormalities in schizophrenia spectrum disorders: a validation & longitudinal study.

Journal: Translational psychiatry

Authors' code: rpomponio/neuroHarmonize (MIT)

Status: code verified, 12 files readable, 1 match

[430] Code ↔ Paper doi:10.1038/s41467-026-72845-3 [paper, repository]

The membrane-to-cortex distance regulates mDia1 activity to control cortical mechanics.

Journal: Nature communications

Authors' code: jvermeil-biophys/CortExplore_PublicVersion (GPL-3.0), mahamidlab/actin_cortex_analysis (GPL-3.0)

Status: code verified, 59 files readable, 4 matches

[431] Code ↔ Paper doi:10.1038/s41592-026-03211-w [paper, repository]

Spatial isoform sequencing at single-cell resolution reveals cell-type-specific spatial isoform variability in multiple brain cell types.

Journal: Nature methods

Authors' code: dmcable/spacexr (GPL-3.0), noush-joglekar/scisorseqr (MIT), algbio/spl-IsoQuant (GPL-2.0), tilgnerlab/Spl-IsoFind (MIT), tilgnerlab/Spl-IsoFind_reproducibility (MIT)

Status: code verified, 347 files readable, 25 matches

[432] doi:10.1038/s44400-026-00139-y [paper]

The feasibility and factor structure of a multi-domain cognitive test battery in older Kenyan adults.

Journal: NPJ dementia

Status: code on request

[433] Code ↔ Paper doi:10.1126/sciadv.aef0343 [paper, repository]

Learning induces activation-mechanism-dependent neural plasticity in an intracortical microstimulation task.

Journal: Science advances

Authors' code: XieLuanLab/icms-activation-plasticity (no license), Zenodo 21384216 (CC-BY-4.0)

Status: code verified, 262 files readable, 28 matches

[434] Code ↔ Paper doi:10.1126/sciadv.aeg6797 [paper, repository]

Dorsoventral gradient of theta sweeps in the medial entorhinal cortex.

Journal: Science advances

Authors' code: Zenodo 21427119 (CC-BY-4.0), zilongji/topographythetasweeps (no license)

Status: code verified, 39 files readable, 9 matches

[435] Code ↔ Paper doi:10.17912/micropub.biology.002204 [paper, repository]

Against All Odds: Computational Screening Via Machine Learning Ranking and Generation of Antibody Candidates for Creutzfeldt-Jakob Disease.

Journal: microPublication biology

Authors' code: Axy-lis/CJD_ML_AAO (no license)

Status: dead link

[436] doi:10.3389/fonc.2026.1928589 [paper, data]

LiteFreqMamba:lightweight frequency-enhanced Mamba for efficient 3D brain tumor segmentation.

Journal: Frontiers in oncology

Status: data only, 1 dataset cited

[437] doi:10.3390/s26175623 [paper, data]

MF-TopoNet: A Multi-Frequency Topological Neural Network for Epileptic Seizure Prediction.

Journal: Sensors (Basel, Switzerland)

Status: data only, 2 datasets cited

[438] doi:10.3892/ijmm.2026.5973 [paper, data]

Effect of MALT1 inhibition by MI‑2 on the microglial phenotype switch, inflammatory cytokine secretion, neuronal loss and oxidative stress in Alzheimer's disease.

Journal: International journal of molecular medicine

Status: data only, 1 dataset cited

[439] Code ↔ Paper doi:10.7554/elife.108208 [paper, repository]

Realistic coupling enables flexible macroscopic traveling waves in the mouse cortex.

Journal: eLife

Authors' code: figshare 29410397 (CC-BY-4.0)

Status: code verified, 16 files readable, 1 match

[440] doi:10.7554/elife.109159 [paper, data]

Differential locus coeruleus-hippocampus interactions during offline states.

Journal: eLife

Status: data only, 1 dataset cited

Thursday, 3 September 2026 (24 papers, 8 on this page)

[441] doi:10.1002/advs.77547 [paper, data]

Nrsn1-Smarcc1 Coupling Regulates Neural Stem Cell Differentiation and Chronic-phase Recovery After Ischemic Stroke.

Journal: Advanced science (Weinheim, Baden-Wurttemberg, Germany)

Status: data only, 1 dataset cited

[442] doi:10.1007/s00221-026-07391-x [paper, data]

Six weeks of isometric resistance training led to evidence of corticospinal but not reticulospinal adaptation in previously untrained adult males.

Journal: Experimental brain research

Status: data only, 2 datasets cited

[443] doi:10.1016/j.isci.2026.117278 [paper]

Altered striatal long-term potentiation in the eIF4E-TG mouse model of autism spectrum disorder.

Journal: iScience

Status: code on request

[444] doi:10.1016/j.isci.2026.117343 [paper, data]

Zebrafish larvae reveal early neuropathology and host responses to nervous necrosis virus.

Journal: iScience

Status: data only, 2 datasets cited

[445] doi:10.1016/j.isci.2026.117380 [paper, data]

<i>N</i>-propargylputrescine as a minimal-tag probe for imaging putrescine dynamics in cellular homeostasis and stress.

Journal: iScience

Status: code on request, 1 dataset cited

[446] Code ↔ Paper doi:10.1038/s41467-026-77318-1 [paper, repository]

Offline generative network reconfiguration guides insight-like accelerated learning by assimilation into schema in rats.

Journal: Nature communications

Authors' code: GDYlab/GDYlabcode (no license)

Status: code verified, 200 files readable, 7 matches

[447] Code ↔ Paper doi:10.1073/pnas.2532946123 [paper, repository]

<i>Hex</i>-MASP for mapping the whole-tissue spatial proteome and the intrabrain distribution of monoclonal antibodies.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: JunQu-Lab/MAsP (Apache-2.0)

Status: code verified, 10 files readable, 2 matches

[448] Code ↔ Paper doi:10.1162/imag.a.1349 [paper, repository]

Rapid cortical mapping with cross-participant encoding models.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: HuthLab/rapid-cortical-mapping (no license)

Status: code verified, 29 files readable, 4 matches

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