Every paper, by date: page 13

44,644 papers with a page: 24,189 with their authors' code, 4,955 with code on request, 15,495 with data only. The most recent first, 224 a page. Page 13 of 200: 17 June 2026 to 9 June 2026.

Wednesday, 17 June 2026 (38 papers, 5 on this page)

[2689] doi:10.3390/cells15121101 [paper, data]

Compensatory Intercellular Mitochondrial Transfer Improves Bioenergetics in P301L Tau-Affected Neuronal Cells.

Journal: Cells

Status: data only, 1 dataset cited

[2690] Code ↔ Paper doi:10.3390/e28060702 [paper, repository]

ICU Delirium as a Failure of Predictive Synchronization: A Two-Agent Active Inference Model.

Journal: Entropy (Basel, Switzerland)

Authors' code: DesignAInf/DELIRIUM-AND-SYNCHRONIZATION (MIT)

Status: code verified, 20 files readable, 39 matches

[2691] Code ↔ Paper doi:10.34133/research.1298 [paper, repository]

Multisite Chronic Pain Reveals Neuro-Immune-Metabolic Dysregulation across Rheumatoid Arthritis and Depression.

Journal: Research (Washington, D.C.)

Authors' code: qianwang-brain/Pain_RheumatoidArthritic_Depression_Fusion (no license)

Status: code verified, 7 files readable, 7 matches

[2692] Code ↔ Paper doi:10.3758/s13428-026-03060-7 [paper, repository]

Synchronizing brains and hearts: A practical guide for caregiver-child fNIRS-ECG multimodal hyperscanning.

Journal: Behavior research methods

Authors' code: support.mindwaretech.com/knowledge-base/kb0092 (no license), support.mindwaretech.com/knowledge-base/kb0093 (no license)

Status: code verified

[2693] Code ↔ Paper doi:10.7554/elife.107276 [paper, repository]

Deployment of endocytic machinery to periactive zones of nerve terminals is independent of active zone assembly and evoked release.

Journal: eLife

Authors' code: rodallab/nmj-measurement (GPL-3.0), rodallab/paz-analysis (GPL-3.0)

Status: code verified, 10 files readable

Tuesday, 16 June 2026 (37 papers)

[2694] doi:10.1016/j.ebiom.2026.106330 [paper, data]

Hippocampal neuroinflammation and altered peripheral neurobiological protein profile in experimental arthritis and systemic juvenile idiopathic arthritis.

Journal: EBioMedicine

Status: data only, 1 dataset cited

[2695] doi:10.1016/j.isci.2026.116399 [paper]

Connexin 50 mediates disease-relevant alpha-synuclein oligomer propagation and neuroinflammation in neurodegenerative disease.

Journal: iScience

Status: code on request

[2696] Code ↔ Paper doi:10.1016/j.isci.2026.116412 [paper, repository]

KOLF2.1J iTF-Microglia: A standardized platform to study microglial transcriptional regulatory networks in CNS disease.

Journal: iScience

Authors' code: HudsonAlpha/iTF-Microglia (MIT), ENCODE-DCC/atac-seq-pipeline (MIT)

Status: code verified, 72 files readable, 27 matches

[2697] doi:10.1021/acsomega.5c11807 [paper, data]

Repurposing <i>T‑614</i> for Gout: An In Silico Framework Integrating Network Pharmacology, Mendelian Randomization, and Single-Cell and Molecular Dynamics Analyses.

Journal: ACS omega

Status: code on request, 4 datasets cited

[2698] Code ↔ Paper doi:10.1038/s41467-026-73941-0 [paper, repository]

Using connectome-based predictive models to reveal the systems standardized tests and clinical symptoms are reflecting.

Journal: Nature communications

Authors' code: YaleMRRC/testing_the_tests (no license), Zenodo 19574108 (CC-BY-4.0)

Status: code verified, 12 files readable, 6 matches

[2699] Code ↔ Paper doi:10.1038/s41467-026-74147-0 [paper, repository]

Epigenetic lockdown of type I interferon sensing and signalling in human pluripotent cells.

Journal: Nature communications

Authors' code: RoweLab/TE-Enrichment (no license)

Status: code verified, 4 files readable

[2700] doi:10.1038/s41467-026-74206-6 [paper, data]

Targeting dopamine transporter for treating social transmission of depression-like behaviors in male mice.

Journal: Nature communications

Status: data only, 1 dataset cited

[2701] Code ↔ Paper doi:10.1038/s41467-026-74299-z [paper, repository]

Discovering multiscale deep formulas in complex systems via neural-guided lambda calculus.

Journal: Nature communications

Authors' code: yhqjohn/deflex (MIT)

Status: code verified, 45 files readable, 5 matches

[2702] Code ↔ Paper doi:10.1038/s41467-026-74354-9 [paper, repository]

Stabilizing stiffness is the most limiting factor in human force exertion.

Journal: Nature communications

Authors' code: figshare 30135883 (CC-BY-4.0), ftessari23/GimbalForceAnalysis (MIT), Zenodo 20076777 (MIT)

Status: code verified, 6 files readable, 1 match

[2703] doi:10.1038/s41598-026-55097-5 [paper, data]

Retrograde transduction of dopaminergic cells in substantia nigra of the rhesus monkey.

Journal: Scientific reports

Status: data only, 1 dataset cited

[2704] doi:10.1038/s41598-026-56980-x [paper]

Sustained Notch activation depletes adult neural stem cells and impairs cognitive function.

Journal: Scientific reports

Status: code on request

[2705] doi:10.1038/s41598-026-57069-1 [paper, data]

Explainable EEG-based machine learning for early diagnosis of Alzheimer's disease and frontotemporal dementia.

Journal: Scientific reports

Status: data only, 3 datasets cited

[2706] Code ↔ Paper doi:10.1038/s41598-026-57714-9 [paper, repository]

Moderate electrical muscle stimulation during voluntary movement does not disrupt the sense of agency or ownership.

Journal: Scientific reports

Authors' code: Zenodo 18678186 (CC-BY-4.0)

Status: code verified, 1 file readable

[2707] doi:10.1038/s41598-026-57953-w [paper, data]

Predictive networks generate motion-induced color illusions.

Journal: Scientific reports

Status: data only, 1 dataset cited

[2708] doi:10.1038/s41598-026-58107-8 [paper, data]

Three-dimensional voltage imaging in live larval zebrafish brains using fully genetically encoded voltage indicator.

Journal: Scientific reports

Status: data only, 1 dataset cited

[2709] Code ↔ Paper doi:10.1038/s42003-026-10427-1 [paper, repository]

Phase-tuned modulation during reward expectancy in human anterior insular cortex.

Journal: Communications biology

Authors' code: figshare 30413173 (CC-BY-4.0)

Status: code verified, 9 files readable, 2 matches

[2710] Code ↔ Paper doi:10.1162/imag.a.1271 [paper, repository]

Emotion regulation in prolonged grief disorder in later life: Protocol and rationale for a longitudinal neuroimaging study.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: organizations/DREAM-research (no license)

Status: dead link

[2711] Code ↔ Paper doi:10.1162/imag.a.1275 [paper, repository]

Glucose metabolism echoes long-range temporal correlations in the human brain.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: wonsang/nonfractal (BSD-2-Clause), murraylab/brainsmash (GPL-3.0)

Status: code verified, 40 files readable, 6 matches

[2712] doi:10.1162/nol.a.254 [paper, data]

A Unified Neural Time Course for Words, Phrases, and Sentences: MEG Evidence from Parallel Presentation.

Journal: Neurobiology of language (Cambridge, Mass.)

Status: data only, 1 dataset cited

[2713] Code ↔ Paper doi:10.1162/nol.a.255 [paper, repository]

Lexical Representations of the Native and Second Languages During L2 Word Reading in Chinese-English Bilinguals.

Journal: Neurobiology of language (Cambridge, Mass.)

Authors' code: OSF uxhqp (no license)

Status: code verified, 37 files readable

[2714] Code ↔ Paper doi:10.1172/jci190035 [paper, repository]

TGF-β signaling promotes astroglial activation and TDP-43 proteinopathy in organoid models of frontotemporal lobar degeneration.

Journal: The Journal of clinical investigation

Authors' code: Zenodo 20709533 (CC-BY-4.0), arrenramsey/ramsey_et_al_2026 (no license)

Status: code verified, 22 files readable, 16 matches

[2715] doi:10.1186/s12967-026-08447-w [paper, data]

Single-cell and spatial transcriptomes reveal oligodendrocyte remodeling fatty acid metabolism microenvironment of lung cancer brain metastases.

Journal: Journal of translational medicine

Status: data only, 1 dataset cited

[2716] Code ↔ Paper doi:10.1186/s13040-026-00571-z [paper, repository]

DAG-VAERL: a novel causal inference method for building causal gene regulatory networks.

Journal: BioData mining

Authors' code: tenglong322/DAG-VAERL (no license)

Status: code verified, 11 files readable, 5 matches

[2717] Code ↔ Paper doi:10.1186/s13073-026-01698-8 [paper, repository]

From aging to Alzheimer's disease: concordant brain DNA methylation changes in late life.

Journal: Genome medicine

Authors' code: TransBioInfoLab/AD-aging-brain-samples-analysis (MIT)

Status: code verified, 35 files readable, 13 matches

[2718] doi:10.1186/s13195-026-02109-1 [paper]

Transcranial pulse stimulation modulates spectral signatures of Alzheimer's disease in the 3×Tg-AD mouse model.

Journal: Alzheimer's research & therapy

Status: code on request

[2719] Code ↔ Paper doi:10.1261/rna.080954.126 [paper, repository]

Neuronal subtype-specific ribosomal protein mRNA expression.

Journal: RNA (New York, N.Y.)

Authors' code: joagarat/RP_scRNAseq_Neurons_Code (no license)

Status: code verified, 23 files readable, 19 matches

[2720] Code ↔ Paper doi:10.1523/eneuro.0029-26.2026 [paper, repository]

Electrical Coupling within Thalamocortical Networks Cumulatively Reduces Cortical Correlation to Sensory Inputs.

Journal: eNeuro

Authors' code: jhaaslab/RingModel (no license)

Status: code verified, 33 files readable, 2 matches

[2721] doi:10.26508/lsa.202603668 [paper, data]

Differential A-to-I editing of SINE B2 RNAs unveils an epitranscriptome response to Aβ neurotoxicity.

Journal: Life science alliance

Status: data only, 1 dataset cited

[2722] doi:10.32604/or.2026.079221 [paper, data]

Single-Cell Sequencing Reveals the Heterogeneity of Glioma and Identifies IGFBP2 as A Potential Therapeutic Target.

Journal: Oncology research

Status: data only, 1 dataset cited

[2723] Code ↔ Paper doi:10.3348/kjr.2026.0103 [paper, repository]

Deep Learning-Based Automated Detection and Burden Assessment of Paramagnetic Rim Lesions on Quantitative Susceptibility Mapping in Patients With Multiple Sclerosis.

Journal: Korean journal of radiology

Authors' code: olnsnlyy/PRL_segmentation (no license)

Status: empty repository, 1 file readable

[2724] doi:10.3389/fimmu.2026.1798003 [paper, data]

HLA DP/DRA molecule regulates systemic inflammation and neuroinflammation, aggravates cognitive impairment and long-term anxiety in murine model of sepsis-associated encephalopathy.

Journal: Frontiers in immunology

Status: data only, 1 dataset cited

[2725] Code ↔ Paper doi:10.3389/fneur.2026.1791834 [paper, repository]

Minimum data requirements and automated preprocessing for reliable EEG biomarkers in Rett syndrome.

Journal: Frontiers in neurology

Authors' code: ytoh2000/Rett_MinimumTime (no license)

Status: code verified, 24 files readable, 9 matches

[2726] Code ↔ Paper doi:10.3389/fnins.2026.1841093 [paper, repository]

Brain protein burden is related to intravoxel incoherent motion: PET-MR imaging study.

Journal: Frontiers in neuroscience

Authors' code: Zenodo 20560360 (CC-BY-4.0), PostonLab/IVIM_fit (MIT)

Status: code verified, 52 files readable

[2727] doi:10.3389/fnins.2026.1848128 [paper, data]

Assessment of tenecteplase target-associated pathogenic mechanisms underlying depression in acute ischemic stroke patients: insights from artificial intelligence-driven multi-omics analysis and <i>in vitro</i> validation.

Journal: Frontiers in neuroscience

Status: data only, 1 dataset cited

[2728] Code ↔ Paper doi:10.3389/frai.2026.1841639 [paper, repository]

Label tree semantic losses for rich multi-class medical image segmentation.

Journal: Frontiers in artificial intelligence

Authors' code: cai4cai/nnunet-tree-semantic-extension (Apache-2.0), qubvel/segmentation_models.pytorch (MIT)

Status: code verified, 160 files readable, 8 matches

[2729] Code ↔ Paper doi:10.3390/medicina62061169 [paper, repository]

Survival Outcomes and Machine Learning-Based Prediction of 12-Month Mortality in Glioblastoma Before and During the COVID-19 Pandemic: A SEER Population-Based Study.

Journal: Medicina (Kaunas, Lithuania)

Authors' code: omerecinar/MDPI-Medicina-Manuscript-Colab-Codes (no license)

Status: code verified, 4 files readable, 5 matches

[2730] Code ↔ Paper doi:10.7554/elife.109313 [paper, repository]

Linear and categorical coding units in the mouse gustatory cortex drive population dynamics and behavior in taste decision-making.

Journal: eLife

Authors' code: llang6/linear-categorical (MIT)

Status: code verified, 101 files readable, 15 matches

Monday, 15 June 2026 (43 papers)

[2731] doi:10.1002/advs.202501197 [paper, data]

GPR124 Alleviates Blood-Brain Barrier Disruption by Enhancing Microvascular Endothelial Function after Traumatic Brain Injury.

Journal: Advanced science (Weinheim, Baden-Wurttemberg, Germany)

Status: data only, 1 dataset cited

[2732] doi:10.1007/s00401-026-03035-0 [paper]

Expression of GPR34 in microglia remains stable in human Alzheimer's disease.

Journal: Acta neuropathologica

Status: code on request

[2733] doi:10.1007/s00401-026-03036-z [paper, data]

Mechanisms of increased Alzheimer's disease pathology with R47H and R62H TREM2 variants.

Journal: Acta neuropathologica

Status: data only, 1 dataset cited

[2734] Code ↔ Paper doi:10.1007/s00429-026-03129-1 [paper, repository]

Brain structure and function in Homo naledi.

Journal: Brain structure & function

Authors' code: Zenodo 20136569 (CC-BY-4.0)

Status: code verified, 1 file readable, 4 matches

[2735] Code ↔ Paper doi:10.1016/j.cell.2026.05.026 [paper, repository]

The critical role of the endogenous immune compartment after CAR T cell therapy in recurrent GBM.

Journal: Cell

Authors' code: SilverbushLab/Bivalent-CAR-T-cell-therapy-in-recurrent-GBM (MIT)

Status: code verified, 71 files readable, 30 matches

[2736] doi:10.1016/j.crmeth.2026.101500 [paper, data]

Simple 3D-printed stirred bioreactor enhances retinal organoid production via improved oxygenation.

Journal: Cell reports methods

Status: code on request, 1 dataset cited

[2737] doi:10.1016/j.crmeth.2026.101501 [paper]

Direct quantification of the metabolic heat output of individual Drosophila brains.

Journal: Cell reports methods

Status: code on request

[2738] doi:10.1016/j.isci.2026.116352 [paper, data]

Neural correlates of innate preference for upward motion.

Journal: iScience

Status: code on request, 1 dataset cited

[2739] Code ↔ Paper doi:10.1038/s41398-026-04142-y [paper, repository]

Phocaeicola vulgatus improves anxiety-like behavior by ameliorating amygdala neuroinflammation and the neurite impairment in IBS.

Journal: Translational psychiatry

Authors' code: MRCIEU/TwoSampleMR (other)

Status: code verified, 73 files readable, 2 matches

[2740] Code ↔ Paper doi:10.1038/s41467-026-74228-0 [paper, repository]

Spatial and network principles behind neural generation of locomotion.

Journal: Nature communications

Authors' code: albert597/TRAILMAP (MIT), BergLab/SpinalProjectome (CC0-1.0), codeocean:9317742 (no license)

Status: code verified, 78 files readable, 3 matches

[2741] doi:10.1038/s41467-026-74279-3 [paper, data]

Structural basis for activation and potentiation in a human α5β3 GABA<sub>A</sub> receptor.

Journal: Nature communications

Status: data only, 7 datasets cited

[2742] Code ↔ Paper doi:10.1038/s41591-026-04414-6 [paper, repository]

Long-term independent use of an intracortical brain-computer interface for speech and cursor control.

Journal: Nature medicine

Authors' code: Neuroprosthetics-Lab/NatMed_independent_personal_use (no license)

Status: code verified, 2 files readable

[2743] Code ↔ Paper doi:10.1038/s41591-026-04432-4 [paper, repository]

Activity-dependent adaptive deep brain stimulation improves gait in Parkinson's disease.

Journal: Nature medicine

Authors' code: dbdq/neurodecode (gnu), Zenodo 19371521 (CC-BY-4.0)

Status: code verified, 78 files readable, 3 matches

[2744] Code ↔ Paper doi:10.1038/s41591-026-04434-2 [paper, repository]

Adaptive deep brain stimulation for dynamic gait control in Parkinson's disease: a randomized feasibility trial.

Journal: Nature medicine

Authors' code: openmind-consortium/Analysis-rcs-data (no license), Weill-Neurohub-OPTiMaL/rcs-simulation (MIT), UCSF-wang-lab/gp-FaDBS (no license), openmind-consortium.github.io (no license)

Status: code verified, 191 files readable, 18 matches

[2745] Code ↔ Paper doi:10.1038/s41598-026-52797-w [paper, repository]

Aging macaques bridge the translational gap in perivascular space biology.

Journal: Scientific reports

Authors' code: ohsu.edu/alzheimers-disease-research-center/data-resources (no license)

Status: code verified

[2746] doi:10.1038/s41598-026-55648-w [paper, data]

Aberrant immunomodulatory signature in β-propeller protein-associated neurodegeneration patient iPSC-derived microglia.

Journal: Scientific reports

Status: data only, 1 dataset cited

[2747] doi:10.1038/s41598-026-55673-9 [paper, data]

Patient-independent hybrid generative-discriminative modeling for seizure detection in long-term scalp EEG.

Journal: Scientific reports

Status: code on request, 1 dataset cited

[2748] doi:10.1038/s41598-026-56922-7 [paper]

First-principles multiscale modeling of cerebral hemodynamics enables personalized predictions of human brain temperature.

Journal: Scientific reports

Status: code on request

[2749] doi:10.1038/s41598-026-57930-3 [paper, data]

Accurately modeling resting-brain functional connectivity using hypergraph neural field-Fourier deep neural network.

Journal: Scientific reports

Status: data only, 1 dataset cited

[2750] Code ↔ Paper doi:10.1073/pnas.2606871123 [paper, repository]

Oxytocin modulates the neurocomputational mechanisms engaged in learning rank relationships in social networks.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: OSF wjbpz (no license)

Status: code verified, 7 files readable, 1 match

[2751] Code ↔ Paper doi:10.1080/10618600.2026.2639081 [paper, repository]

Probabilistic Joint and Individual Variation Explained (ProJIVE) for Data Integration.

Journal: Journal of computational and graphical statistics : a joint publication of American Statistical Association, Institute of Mathematical Statistics, Interface Foundation of North America

Authors' code: thebrisklab/ProJIVE (other)

Status: code verified, 197 files readable, 5 matches

[2752] Code ↔ Paper doi:10.1128/mbio.00863-26 [paper, repository]

Zika virus infections of human stem cell-derived cerebral organoids reveal viral lineage-specific pathogenesis responses.

Journal: mBio

Authors' code: KochInstitute-Bioinformatics/Gehrke_d7_infection (MIT)

Status: code verified, 17 files readable, 4 matches

[2753] doi:10.1162/imag.a.1260 [paper, data]

Organization, fine structure, and stereotaxic maps of the human Bed nucleus of the Stria terminalis.

Journal: Imaging neuroscience (Cambridge, Mass.)

Status: data only, 1 dataset cited

[2754] Code ↔ Paper doi:10.1162/imag.a.1269 [paper, repository]

From early to contemporary normative modeling: Mapping individual differences in neurophysiological signals.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: Zenodo 15441320 (GPL-3.0), ml4pnp/meganorm (GPL-3.0)

Status: code verified, 45 files readable, 8 matches

[2755] doi:10.1162/imag.a.1270 [paper, data]

Disentangling the unique associations of age, pubertal stage, and pubertal hormones with white matter microstructure in childhood and adolescence.

Journal: Imaging neuroscience (Cambridge, Mass.)

Status: data only, 1 dataset cited

[2756] Code ↔ Paper doi:10.1162/imag.a.1272 [paper, repository]

Building bridges between brain and behavior: An open-source toolbox for joint modeling with fMRI.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: ampl-psych/EMC2 (GPL-3.0), OSF jxhcp (no license)

Status: code verified, 132 files readable, 15 matches

[2757] Code ↔ Paper doi:10.1162/imag.a.1274 [paper, repository]

QuNex recipes: Executable, human-readable workflows for reproducible neuroimaging research.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: ULJ-Yale/qunex_run_recipe (MIT)

Status: code verified, 4 files readable, 2 matches

[2758] doi:10.1186/s12864-026-12959-6 [paper, data]

Cestode infection is linked to transcriptional shifts in neuropeptide signalling and caste-specific ageing pathways in a social insect.

Journal: BMC genomics

Status: data only, 7 datasets cited

[2759] Code ↔ Paper doi:10.1186/s12974-026-03885-1 [paper, repository]

Shared transcriptomic signatures in perilesional and contralesional cortex after ischemic stroke.

Journal: Journal of neuroinflammation

Authors' code: Zenodo 14750099 (CC-BY-4.0)

Status: code verified, 99 files readable

[2760] Code ↔ Paper doi:10.1371/journal.pbio.3003856 [paper, repository]

Aging and metabolism contribute separately to brain-body health.

Journal: PLoS biology

Authors' code: netneurolab/Farahani_Age_Metabolism (no license), Zenodo 20412555 (CC-BY-4.0), physimals/HCP-asl (Apache-2.0), thomasyeolab/cbig (MIT)

Status: code verified, 2,089 files readable, 8 matches

[2761] doi:10.1371/journal.pone.0351177 [paper, data]

Dialogic reading at age 2 is linked to frontal activation related to executive function at age 5: An fNIRS study.

Journal: PloS one

Status: data only, 1 dataset cited

[2762] Code ↔ Paper doi:10.1371/journal.pone.0351431 [paper, repository]

Revisiting the role of structural connectivity-based parcellation in thalamic nuclei segmentation: Benchmarking against recent state-of-the-art methods.

Journal: PloS one

Authors' code: Zenodo 20473971 (CC-BY-4.0)

Status: code verified, 3 files readable, 2 matches

[2763] Code ↔ Paper doi:10.1371/journal.ppat.1014351 [paper, repository]

Central Nervous System T-cell immune architecture, and not HIV burden, tracks with cognition under long-term viral suppression.

Journal: PLoS pathogens

Authors' code: Zenodo 18111910 (CC-BY-4.0)

Status: empty repository

[2764] doi:10.3389/fncom.2026.1851416 [paper, data]

AI-driven neuroanalytic modeling for mental health: multichannel CNN-based autism spectrum disorder detection via facial pattern analysis.

Journal: Frontiers in computational neuroscience

Status: data only, 1 dataset cited

[2765] Code ↔ Paper doi:10.3389/fnetp.2026.1853254 [paper, repository]

Recovery in gait and posture: a network-based approach to the assessment of rehabilitation effectiveness after spinal cord injury.

Journal: Frontiers in network physiology

Authors' code: Griga21/Moving-Composite-Analysis (no license)

Status: dead link

[2766] Code ↔ Paper doi:10.3389/fnins.2026.1852774 [paper, repository]

Spatial transcriptomics on an expanded dataset at the brain-electrode interface: exploration of variability and identification of novel biomarkers.

Journal: Frontiers in neuroscience

Authors' code: msureil/SpatioBiomarker (no license)

Status: code verified, 14 files readable, 4 matches

[2767] Code ↔ Paper doi:10.3389/fpsyg.2026.1774068 [paper, repository]

Analysis of cognitive mechanisms in phoneme perception and pronunciation errors among Korean language learners.

Journal: Frontiers in psychology

Authors' code: Khalizo/Deep-Learning-Detection-Of-EEG-Based-Attention (no license)

Status: code verified, 41 files readable, 9 matches

[2768] doi:10.3390/cells15121082 [paper, data]

Ketone-Dependent Restoration of Autophagy and Mitochondrial Quality Control Through VPS35 in a Drosophila Model of C99-Induced Neurodegeneration.

Journal: Cells

Status: code on request, 1 dataset cited

[2769] Code ↔ Paper doi:10.3390/cells15121086 [paper, repository]

Investigating Alzheimer's Disease-Associated Genes Using Differential Splicing Frequency Analysis.

Journal: Cells

Authors' code: gaoshanT/Fastq_clean (no license)

Status: code verified, 49 files readable, 2 matches

[2770] doi:10.3390/s26123804 [paper, data]

A Centralized AI Lakehouse Framework for Brain Tumor MRI Classification and Segmentation, University KPI Forecasting, and Water Potability Prediction.

Journal: Sensors (Basel, Switzerland)

Status: data only, 2 datasets cited

[2771] doi:10.3758/s13423-026-02911-w [paper, data]

This sounds important: Electrophysiological responses reveal a dedicated learning mechanism to process salient consonant sounds in human newborns.

Journal: Psychonomic bulletin & review

Status: data only, 1 dataset cited

[2772] doi:10.3758/s13423-026-02939-y [paper, data]

Rational numbers: A systematic review and ALE meta-analysis of the neuroimaging of fraction and decimal processing in the brain.

Journal: Psychonomic bulletin & review

Status: data only, 1 dataset cited

[2773] Code ↔ Paper doi:10.7554/elife.90013 [paper, repository]

Exposure to false cardiac feedback alters pain perception and anticipatory cardiac frequency.

Journal: eLife

Authors' code: EP171993/painperception (MIT)

Status: code verified, 3 files readable

Sunday, 14 June 2026 (8 papers)

[2774] doi:10.1016/j.isci.2026.116034 [paper]

Distinct temporal patterns of beta bursts differentiate successful and failed movement cancellation.

Journal: iScience

Status: code on request

[2775] doi:10.1016/j.isci.2026.116252 [paper]

Ion transport peptide regulates larval body water balance via a receptor guanylyl cyclase in <i>Drosophila</i>.

Journal: iScience

Status: code on request

[2776] Code ↔ Paper doi:10.1038/s41598-025-11075-x [paper, repository]

An ensemble of deep learning models with falcon optimization assisted diabetic retinopathy diagnosis on retinal fundus images.

Journal: Scientific reports

Authors' code: kaggle.com/competitions/diabetic-retinopathy-detection (no license)

Status: dead link

[2777] Code ↔ Paper doi:10.1038/s41598-026-53279-9 [paper, repository]

Depression detection from multimodalities based on LeNet with hunter-geese optimization.

Journal: Scientific reports

Authors' code: kaggle.com/code/rizkyyk (no license)

Status: dead link

[2778] doi:10.1038/s41598-026-54109-8 [paper, data]

A computational model to describe multi-regional brain architecture during neurodegeneration in Alzheimer's disease.

Journal: Scientific reports

Status: data only, 1 dataset cited

[2779] Code ↔ Paper doi:10.1038/s41598-026-57654-4 [paper, repository]

Digit-tracking reveals curiosity-driven visual attention in macaque monkeys.

Journal: Scientific reports

Authors' code: DirkBWalther/SaliencyToolbox (other), OSF na4mv (no license)

Status: code verified, 87 files readable, 6 matches

[2780] Code ↔ Paper doi:10.1038/s41598-026-57913-4 [paper, repository]

Explainable ensemble learning using SHAP for ERP anomaly detection.

Journal: Scientific reports

Authors' code: Zenodo 20609426 (CC-BY-4.0)

Status: code verified

[2781] Code ↔ Paper doi:10.1503/cmaj.251721 [paper, repository]

Differences in admission to trauma centres by sex among adults with traumatic brain injury: a population-based cohort study.

Journal: CMAJ : Canadian Medical Association journal = journal de l'Association medicale canadienne

Authors' code: ices.on.ca/das (no license)

Status: code verified

Saturday, 13 June 2026 (15 papers)

[2782] doi:10.1021/acsphyschemau.6c00066 [paper, data]

Cholinergic Modulation of Proteinoid Microsphere Networks as Prebiotic Depression Models.

Journal: ACS physical chemistry Au

Status: data only, 1 dataset cited

[2783] Code ↔ Paper doi:10.1038/s41398-026-04157-5 [paper, repository]

Association of glymphatic function with 40-Hz neural oscillations, systemic metabolic markers, and cognitive performance in healthy aging adults: An EEG and MRI study.

Journal: Translational psychiatry

Authors' code: HALFpipe/HALFpipe (GPL-3.0)

Status: code verified, 462 files readable, 1 match

[2784] Code ↔ Paper doi:10.1038/s41467-026-74274-8 [paper, repository]

Regional sex differences in human cortical anatomy vary in their morphometric bases and overlap with sex chromosomal and gonadal influences.

Journal: Nature communications

Authors' code: TheHyoLee/sex_differences_in_human_cortical_anatomy (no license)

Status: code verified, 9 files readable, 10 matches

[2785] Code ↔ Paper doi:10.1038/s41467-026-74320-5 [paper, repository]

Spatial architecture of autism pathogenesis reveals mosaic structural disarray during early development.

Journal: Nature communications

Authors' code: Zenodo 19229995 (CC-BY-4.0), jinyueliu0/spatial-signaling-score (no license)

Status: code verified, 20 files readable, 10 matches

[2786] Code ↔ Paper doi:10.1038/s41467-026-74331-2 [paper, repository]

Trial-by-trial fMRI-neurofeedback dissociates fusiform and occipital contributions to face detection and recognition.

Journal: Nature communications

Authors' code: lucp88/prepNFB (no license), lucp88/NCOMMS-24-11279A (no license), Zenodo 19548058 (CC-BY-4.0)

Status: code verified, 67 files readable, 21 matches

[2787] doi:10.1038/s41598-026-56416-6 [paper]

EEG blink and gaze control using random forest classification for accessible assistive robotic navigation in real world conditions.

Journal: Scientific reports

Status: code on request

[2788] doi:10.1038/s41598-026-57800-y [paper, data]

Advancing biomedical data analytics using explainable neural network-based learning model for progressive neurodegenerative disorder diagnosis.

Journal: Scientific reports

Status: data only, 1 dataset cited

[2789] Code ↔ Paper doi:10.1038/s43856-026-01722-3 [paper, repository]

Local and global patterns support medical imaging as a biomarker of ageing.

Journal: Communications medicine

Authors' code: tamaramueller/age_biomarkers (no license)

Status: code verified, 36 files readable, 6 matches

[2790] doi:10.1186/s10194-026-02399-8 [paper]

Early life stress induces brain-wide electrical network predisposition to migraine.

Journal: The journal of headache and pain

Status: code on request

[2791] doi:10.1186/s12868-026-01016-3 [paper, data]

Proteomic profiling reveals structural and adhesion pathways regulated by the inverted CHRFAM7AΔ2bp variant in human neural progenitor cells.

Journal: BMC neuroscience

Status: data only, 1 dataset cited

[2792] doi:10.1186/s12935-026-04341-z [paper, data]

From bioinformatics to bedside: PPBP drives glioblastoma progression under hypoxia via CXCR2/PI3K/Akt signaling and is targetable by Oenothein B.

Journal: Cancer cell international

Status: data only, 1 dataset cited

[2793] doi:10.1186/s12983-026-00620-7 [paper, data]

In silico screening for safe and potent essential oils against mosquito neural targets.

Journal: Frontiers in zoology

Status: data only, 4 datasets cited

[2794] doi:10.1186/s13195-026-02110-8 [paper]

Cognitive, biomarker, and neuroimaging indices associated with traumatic encephalopathy syndrome across two independent athlete cohorts.

Journal: Alzheimer's research & therapy

Status: code on request

[2795] Code ↔ Paper doi:10.1186/s40478-026-02346-3 [paper, repository]

α-Synuclein overexpression increases the tropism of pre-formed fibrils and MSA-patient derived seeds towards oligodendroglia.

Journal: Acta neuropathologica communications

Authors' code: DBI-INFRA/pSynDetectQuPath (no license)

Status: empty repository, 1 file readable

[2796] Code ↔ Paper doi:10.1186/s40708-026-00312-2 [paper, repository]

Synergistic and redundant information dynamics exhibit dissociable alterations across schizophrenia and neurodevelopmental conditions.

Journal: Brain informatics

Authors' code: gpreti/GSP_StructuralDecouplingIndex (Apache-2.0), nitrc.org/projects/conn (no license), hinatanago/PhiID_analysis (no license)

Status: code verified, 43 files readable, 2 matches

Friday, 12 June 2026 (27 papers)

[2797] Code ↔ Paper doi:10.1002/advs.202523009 [paper, repository]

Personalized Network-Guided Neuromodulation Enhances Human Working Memory.

Journal: Advanced science (Weinheim, Baden-Wurttemberg, Germany)

Authors' code: hmlicas/Collaborative_Brain_Decomposition (no license), zaixucui/pncsinglefuncparcel (no license), hmlicas/Loop_TMS (no license)

Status: code verified, 576 files readable, 9 matches

[2798] Code ↔ Paper doi:10.1002/epi.70296 [paper, repository]

Fully automated three-dimensional deep learning-based magnetic resonance imaging segmentation of brain cavities in epilepsy surgery.

Journal: Epilepsia

Authors' code: penn-cnt/DeepResection (no license), rfcasseb/resectvol_dl (BSD-3-Clause)

Status: code verified, 34 files readable

[2799] Code ↔ Paper doi:10.1007/s00285-026-02415-0 [paper, repository]

Spiking neural models for decision-making tasks with learning.

Journal: Journal of mathematical biology

Authors' code: SophieJaffard/MEL (GPL-3.0)

Status: code verified, 6 files readable, 4 matches

[2800] doi:10.1016/j.cnp.2026.06.005 [paper]

Reliability of magnetoencephalography beta desynchronization for language lateralization in a subsequent memory effect paradigm.

Journal: Clinical neurophysiology practice

Status: code on request

[2801] Code ↔ Paper doi:10.1016/j.cnp.2026.06.006 [paper, repository]

EStiMapp: A practical tool for mapping clinical symptoms evoked by electrical stimulation in intracranial EEG for epilepsy surgery.

Journal: Clinical neurophysiology practice

Authors' code: UMCU-EpiLAB/umcuEpi_estimapp (no license), estimapp.onrender.com (no license)

Status: code verified, 15 files readable, 7 matches

[2802] doi:10.1016/j.isci.2026.116292 [paper]

Sleeve gastrectomy improves cognition by enhancing central ERK/CREB/BDNF pathway through increased GIP secretion.

Journal: iScience

Status: code on request

[2803] Code ↔ Paper doi:10.1016/j.isci.2026.116392 [paper, repository]

Dual-color augmented reality waveguide display for color vision assistance using color tracking.

Journal: iScience

Authors' code: qldthe8675/Color-extraction (no license)

Status: code verified, 2 files readable, 1 match

[2804] Code ↔ Paper doi:10.1016/j.isci.2026.116394 [paper, repository]

A dual space MRI radiomic network signature for risk stratification and subtyping of mild cognitive impairment.

Journal: iScience

Authors' code: bearsyep/iscience_R2SN_radiomics (no license)

Status: code verified, 1 file readable, 1 match

[2805] doi:10.1016/j.xcrm.2026.102867 [paper]

Psilocybin restores behavior and 5-HT<sub>2A</sub> signaling while reducing microglial density after chronic traumatic brain injury in rats.

Journal: Cell reports. Medicine

Status: code on request

[2806] Code ↔ Paper doi:10.1016/j.ynirp.2026.100366 [paper, repository]

Lower resting-state functional connectivity between frontoparietal and sensory networks is associated with recent pain intensity in a community sample of youth.

Journal: Neuroimage. Reports

Authors' code: OSF w482t (no license)

Status: code verified, 4 files readable, 6 matches

[2807] Code ↔ Paper doi:10.1038/s41398-026-04140-0 [paper, repository]

Predicting stress response trajectories: Differential contributions of limbic and prefrontal regions to cortisol and affective responses.

Journal: Translational psychiatry

Authors' code: OSF gk6w9 (no license)

Status: code verified, 2 files readable

[2808] Code ↔ Paper doi:10.1038/s41467-026-73938-9 [paper, repository]

Higher visual areas act like domain-general filters with strong selectivity and functional specialization.

Journal: Nature communications

Authors' code: mkhosla-ucsd/response-optimized-modeling (MIT)

Status: code verified, 15 files readable, 5 matches

[2809] Code ↔ Paper doi:10.1038/s41467-026-74347-8 [paper, repository]

Compositionality of social gaze in the prefrontal-amygdala circuits.

Journal: Nature communications

Authors' code: changlabneuro/social_gaze_compositionality (no license), Zenodo 20061507 (CC-BY-4.0), qiguangyao/social_gaze_compositionality (no license)

Status: code verified, 27 files readable, 18 matches

[2810] Code ↔ Paper doi:10.1038/s41598-026-55397-w [paper, repository]

Fast surface reconstruction of human brain MRI: benchmarking deep-learning based morphometry tools.

Journal: Scientific reports

Authors' code: SCAN-NRAD/DL-DiReCT-V2 (BSD-3-Clause)

Status: code verified, 27 files readable, 1 match

[2811] Code ↔ Paper doi:10.1038/s41598-026-56688-y [paper, repository]

On the value of radiomics in addition to clinical measures in emotional conflict fMRI for predicting sertraline response in major depressive disorder.

Journal: Scientific reports

Authors' code: Mancy-Chen/EMBARC-fMRI (MIT)

Status: code verified, 30 files readable, 11 matches

[2812] doi:10.1038/s41598-026-57082-4 [paper, data]

Glucose-to-potassium ratio has a non-linear J-shaped association with acute kidney injury risk in traumatic brain injury.

Journal: Scientific reports

Status: data only, 1 dataset cited

[2813] Code ↔ Paper doi:10.1073/pnas.2517639123 [paper, repository]

Transformations of the spatial activity manifold convey aversive information in CA3.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: amiguello/aversive_analysis_2025 (no license)

Status: code verified, 7 files readable, 10 matches

[2814] Code ↔ Paper doi:10.1093/pnasnexus/pgag213 [paper, repository]

Two-factor synaptic plasticity enables memory consolidation during neuronal burst firing.

Journal: PNAS nexus

Authors' code: KJacquerie/Two-Factor-Plasticity (no license)

Status: code verified, 49 files readable, 1 match

[2815] doi:10.1126/sciadv.aec6633 [paper, data]

Topological acoustic synapse for high-dimensional neuromorphic computing.

Journal: Science advances

Status: data only, 1 dataset cited

[2816] Code ↔ Paper doi:10.1126/sciadv.aef6263 [paper, repository]

Deep learning-enabled versatile shape perception for soft robots via single-ended multimode fiber.

Journal: Science advances

Authors' code: Zenodo 19601658 (CC-BY-4.0)

Status: code verified, 28 files readable, 4 matches

[2817] doi:10.1186/s12984-026-02048-w [paper, data]

Functional reorganization of the contralesional precentral gyrus following acute subcortical ischemic stroke and its association with gene expression profile.

Journal: Journal of neuroengineering and rehabilitation

Status: data only, 1 dataset cited

[2818] Code ↔ Paper doi:10.1212/wnl.0000000000218164 [paper, repository]

Race and Ethnicity, Hypertension, and Neuroimaging Markers of Brain Aging: A Causal Mediation Analysis in the HABS-HD Study.

Journal: Neurology

Authors' code: michelle-caunca/HABS_CM_RaceEthHTNImg (no license)

Status: code verified, 12 files readable, 3 matches

[2819] Code ↔ Paper doi:10.1371/journal.pone.0351405 [paper, repository]

Unimodal vs. multimodal deep learning for non-invasive MGMT promoter methylation prediction in glioblastoma: A systematic evaluation on the BraTS 2021 dataset.

Journal: PloS one

Authors' code: kaggle.com/competitions/rsna-miccai-brain-tumor-radiogenomic-classification (no license), freddy-oulia/MGMT_Promoter_Methylation_Prediction (CC-BY-4.0)

Status: code verified, 6 files readable, 6 matches

[2820] doi:10.3389/fgene.2026.1818975 [paper, data]

Clock-related neuropeptides in <i>Acyrthosiphon pisum</i>.

Journal: Frontiers in genetics

Status: data only, 1 dataset cited

[2821] doi:10.3389/fimmu.2026.1837728 [paper]

Hexokinase 2 upregulation is associated with glycolytic reprogramming and neuroinflammation in hypoxic-ischemic brain damage: a therapeutic target for early intervention.

Journal: Frontiers in immunology

Status: data only

[2822] Code ↔ Paper doi:10.3791/71046 [paper, repository]

Spatially Resolved, Integrated Single-Cell Multiomic Profiling of the Transcriptome and Epigenomic Targets in Frozen Tissue Sections.

Journal: Journal of visualized experiments : JoVE

Authors' code: Liuy12/Mouse_Brain_Trekker_Multiome_Cuttag (no license)

Status: code verified, 2 files readable, 3 matches

[2823] Code ↔ Paper doi:10.7554/elife.100642 [paper, repository]

Disrupted hippocampal theta-gamma coupling and spike-field coherence following experimental traumatic brain injury.

Journal: eLife

Authors' code: WolfLabPenn/Adam-eLife_2026 (MIT)

Status: code verified, 16 files readable, 4 matches

Thursday, 11 June 2026 (41 papers)

[2824] doi:10.1007/s12017-026-08935-8 [paper]

Subgroup-Specific Associations of GRIA Genes Encoding AMPA Glutamate Receptor Subunits with Patient Survival in Medulloblastoma.

Journal: Neuromolecular medicine

Status: data only

[2825] doi:10.1007/s12672-026-05414-1 [paper]

Construction and validation of a model based on necroptosis-related genes for predicting glioma prognosis.

Journal: Discover oncology

Status: data only

[2826] doi:10.1016/j.apsb.2026.06.016 [paper, data]

Rhynchophylline rewires DLAT lipoylation <i>via</i> conformational control to reverse mitochondrial bioenergetic collapse against dopaminergic neuronal injury.

Journal: Acta pharmaceutica Sinica. B

Status: data only, 2 datasets cited

[2827] Code ↔ Paper doi:10.1016/j.crmeth.2026.101481 [paper, repository]

A hybrid micro-ECoG for functionally targeted multi-site and multi-scale investigation.

Journal: Cell reports methods

Authors' code: dataverse.harvard.edu/dataverse/hybridecog (no license), Zenodo 20089744 (CC-BY-4.0)

Status: code verified, 24 files readable, 9 matches

[2828] Code ↔ Paper doi:10.1016/j.isci.2026.116008 [paper, repository]

Longitudinally altered default mode network and insula multimodal brain pattern in end-stage renal disease during sustained hemodialysis treatment.

Journal: iScience

Authors' code: adni.loni.usc.edu (no license), trendscenter.org/software/fit (no license)

Status: code verified

[2829] doi:10.1016/j.isci.2026.116138 [paper]

Different modulation patterns of theta and gamma dual-site HD-tACS on cognitive impairment.

Journal: iScience

Status: code on request

[2830] Code ↔ Paper doi:10.1016/j.isci.2026.116206 [paper, repository]

Gut distension evokes rapid neural dynamics in vagal and hindbrain populations of larval zebrafish.

Journal: iScience

Authors' code: gitlab.oit.duke.edu/ean26/arinel-et-al_2026 (no license), naumann-lab/caimageanalysis (no license), Naumann-Lab/alignment (MIT), Zenodo 20127931 (CC-BY-4.0), Zenodo 20128341 (MIT), arthur-pe/slicetca (MIT)

Status: code verified, 86 files readable, 19 matches

[2831] doi:10.1016/j.isci.2026.116317 [paper]

Pathogenic mutations in clathrin heavy chain disrupt synapse architecture and learning in <i>Drosophila</i>.

Journal: iScience

Status: code on request

[2832] Code ↔ Paper doi:10.1016/j.isci.2026.116320 [paper, repository]

Machine learning-based gait classification and genome-wide association identify a QTL for gait type in Colombian paso horses.

Journal: iScience

Authors' code: JianYang-Lab/GCTA (GPL-3.0), saigegit/SAIGE (GPL-3.0)

Status: code verified, 134 files readable, 4 matches

[2833] Code ↔ Paper doi:10.1016/j.isci.2026.116336 [paper, repository]

Transcriptomic signatures of synaptic loss in Alzheimer's disease.

Journal: iScience

Authors' code: Sahuhu-Sun/Imaging-transcriptomics (no license)

Status: code verified, 5 files readable, 2 matches

[2834] Code ↔ Paper doi:10.1016/j.isci.2026.116337 [paper, repository]

Multimodal atlas of single neuron metabolic electrophysiological coupling uncovers circadian rewiring.

Journal: iScience

Authors' code: SNMS-ctrl/SNMS (no license)

Status: code verified, 4 files readable

[2835] Code ↔ Paper doi:10.1016/j.mex.2026.104005 [paper, repository]

Meta-EEGs: A structured approach for processing high-volume EEG data.

Journal: MethodsX

Authors' code: misahub2023/META-EEG-CHBMIT-and-SIENA (no license)

Status: code verified, 5 files readable, 3 matches

[2836] Code ↔ Paper doi:10.1016/j.neuroimage.2026.122051 [paper, repository]

Determining hemispheric language dominance from MEG beta-power modulations: Concordance with fMRI.

Journal: NeuroImage

Authors' code: nih-megcore/MegNET_2020 (BSD-3-Clause)

Status: code verified, 28 files readable, 2 matches

[2837] doi:10.1016/j.omton.2026.201263 [paper]

Comparative evaluation of oncolytic viruses reveals opposing preferences for glioblastoma subtypes.

Journal: Molecular therapy. Oncology

Status: code on request

[2838] doi:10.1016/j.stemcr.2026.102951 [paper]

Electron transport chain complex I and mitochondrial fusion regulate ROS for differentiation in Drosophila neural stem cells.

Journal: Stem cell reports

Status: code on request

[2839] doi:10.1016/j.stemcr.2026.102953 [paper]

Effects of voluntary exercise, diet, and selenium on hypothalamic adult neurogenesis.

Journal: Stem cell reports

Status: code on request

[2840] Code ↔ Paper doi:10.1016/j.stemcr.2026.102958 [paper, repository]

Scalable hypothalamic neuron differentiation from human pluripotent stem cells suitable for modeling metabolic disorders.

Journal: Stem cell reports

Authors' code: combine-lab/salmon (BSD-3-Clause)

Status: code verified, 95 files readable

[2841] Code ↔ Paper doi:10.1016/j.xcrm.2026.102850 [paper, repository]

Patient-derived organoids predict personalized drug response and reveal alternative therapeutic options in glioblastoma.

Journal: Cell reports. Medicine

Authors' code: SGMedical/GBO (no license)

Status: code verified, 3 files readable, 3 matches

[2842] Code ↔ Paper doi:10.1016/j.xpro.2026.104622 [paper, repository]

Protocol for direct in vivo evaluation of the stretch reflex in adult mice.

Journal: STAR protocols

Authors' code: BU-SpinalNeuromechanicsLab/stretch_reflex_scripts (no license), Zenodo 20286340 (CC-BY-4.0)

Status: empty repository

[2843] doi:10.1038/s12276-026-01739-7 [paper, data]

Targeting the SIRT6-TDO2/KYNA-mTOR axis rescues synaptic and cognitive deficits in fetal growth restriction offspring.

Journal: Experimental & molecular medicine

Status: data only, 1 dataset cited

[2844] Code ↔ Paper doi:10.1038/s41398-026-04108-0 [paper, repository]

Divergent transcriptomic pathways underlie sex-biased cognitive rescue by developmental GSK3B inhibition in a mouse model of 22q11.2 deletion syndrome.

Journal: Translational psychiatry

Authors' code: PasseckerLab (no license)

Status: code verified

[2845] doi:10.1038/s41467-026-73997-y [paper, data]

Cortex-specific inversion of visual responses during sleep.

Journal: Nature communications

Status: data only, 2 datasets cited

[2846] Code ↔ Paper doi:10.1038/s41467-026-73999-w [paper, repository]

Independence and coherence in temporal sequence computation across the fronto-parietal network.

Journal: Nature communications

Authors' code: hiroto726/TwinRNN (no license), Zenodo 19907436 (CC-BY-4.0)

Status: code verified, 30 files readable, 4 matches

[2847] Code ↔ Paper doi:10.1038/s41467-026-74231-5 [paper, repository]

Threat intensity shapes cortical engram architecture supporting remote memory retrieval.

Journal: Nature communications

Authors' code: AllenInstitute/MIES (BSD-2-Clause), PantheaNemat/Mitric-Beerens_etal_2026_Nat.Commun (no license), Zenodo 19483826 (CC-BY-4.0), pantheanemat/mitric-beerens_etal_2026_nat.commun. (no license)

Status: code verified, 52 files readable, 3 matches

[2848] doi:10.1038/s41598-026-53065-7 [paper, data]

Music-taste interactions enhance gustatory and sensorimotor brain activity.

Journal: Scientific reports

Status: data only, 1 dataset cited

[2849] Code ↔ Paper doi:10.1038/s42003-026-10464-w [paper, repository]

Quantifying electrostatic control of docking and binding energetics in functional Cx36 gap junctions.

Journal: Communications biology

Authors' code: Zenodo 20303481 (CC-BY-4.0), zhaolabutmb/Cx36_Channel_Electrostatics (no license)

Status: code verified, 6 files readable, 6 matches

[2850] doi:10.1038/s44385-026-00090-w [paper]

Focused ultrasound-induced cavitation in a human brain microphysiological system produces injury signaling biomarkers consistent with blast trauma.

Journal: npj biomedical innovations

Status: code on request

[2851] Code ↔ Paper doi:10.1093/braincomms/fcag220 [paper, repository]

When pain becomes self: limbic-default mode network hyperconnectivity predicts microvascular decompression failure in trigeminal neuralgia.

Journal: Brain communications

Authors' code: Zenodo 19106465 (CC-BY-4.0)

Status: code verified, 8 files readable, 5 matches

[2852] doi:10.1159/000553009 [paper, data]

State-of-the-Art Imaging and Localization Assessment in Post-Operative Deep Brain Stimulation for Parkinson's Disease: A Review.

Journal: Stereotactic and functional neurosurgery

Status: data only, 1 dataset cited

[2853] doi:10.1162/imag.a.1251 [paper]

Detection of slowly expanding lesions in people with multiple sclerosis using MRI: A scoping review.

Journal: Imaging neuroscience (Cambridge, Mass.)

Status: code on request

[2854] doi:10.1172/jci.insight.198842 [paper, data]

Fatty acid amide hydrolase inhibition for treatment of amyotrophic lateral sclerosis.

Journal: JCI insight

Status: data only, 2 datasets cited

[2855] doi:10.1172/jci199698 [paper, data]

Pathological disruption of CELF2 shuttling causes neuronal hyperactivity, learning deficits, and seizures.

Journal: The Journal of clinical investigation

Status: data only, 1 dataset cited

[2856] doi:10.1186/s12967-026-08385-7 [paper, data]

Dihydrotanshinone I as a novel signal transducer and activator of transcription 3 inhibitor for glioblastoma treatment.

Journal: Journal of translational medicine

Status: data only, 1 dataset cited

[2857] Code ↔ Paper doi:10.1242/jeb.252287 [paper, repository]

Prenatal acoustic communication triggers adaptive vascular programming in the developing avian brain.

Journal: The Journal of experimental biology

Authors' code: praxsubba/Heat_Call_Reprogramming_Bulk_RNA_Seq (MIT)

Status: code verified, 7 files readable, 14 matches

[2858] Code ↔ Paper doi:10.1371/journal.pdig.0001445 [paper, repository]

A digital twin approach for simultaneous reconstruction of brain anatomy and dynamics from neural data.

Journal: PLOS digital health

Authors' code: Zenodo 5879293 (other-open)

Status: code verified

[2859] doi:10.1371/journal.pone.0345947 [paper, data]

Integrating multi-session transcranial direct current stimulation with routine physical therapy to improve quadriceps strength and activation in athletes during subacute recovery following ACL reconstruction: A double-blind RCT.

Journal: PloS one

Status: data only, 1 dataset cited

[2860] Code ↔ Paper doi:10.1371/journal.pone.0350140 [paper, repository]

Signal combination in flutter vibration perception.

Journal: PloS one

Authors' code: OSF m79d2 (no license)

Status: code verified, 5 files readable, 6 matches

[2861] doi:10.3389/fnagi.2026.1789422 [paper, data]

Short-term neurovascular and electrophysiological responses to combined visual and vibration stimulation in older adults with mild cognitive impairment.

Journal: Frontiers in aging neuroscience

Status: data only, 2 datasets cited

[2862] Code ↔ Paper doi:10.3389/fnins.2026.1794676 [paper, repository]

Occipital and parietal non-invasive brain stimulation enhances perceptual learning and transfer: evidence from high-frequency tRNS.

Journal: Frontiers in neuroscience

Authors' code: OSF bs2gt (no license)

Status: code found, still to be checked

[2863] Code ↔ Paper doi:10.3389/fnins.2026.1804069 [paper, repository]

Neural and autonomic regulation during brief mindfulness and relaxation interventions in clinical populations: a multimodal MEG study protocol.

Journal: Frontiers in neuroscience

Authors' code: doi:10.17605/osf (no license)

Status: dead link

[2864] Code ↔ Paper doi:10.3389/frai.2026.1807248 [paper, repository]

Federated learning framework for medical image analysis with perspective-aware contrastive and mixture of experts.

Journal: Frontiers in artificial intelligence

Authors' code: Shradha1023/FedPAC-ME (MIT), Zenodo 17883548 (MIT)

Status: code verified, 52 files readable, 20 matches

Wednesday, 10 June 2026 (41 papers)

[2865] doi:10.1016/j.ajcnut.2026.101392 [paper]

Circulating palmitoleic acid is associated with cerebral glucose metabolism in healthy middle-aged individuals: results from the Progression of Early Subclinical Atherosclerosis prospective cohort study.

Journal: The American journal of clinical nutrition

Status: code on request

[2866] Code ↔ Paper doi:10.1016/j.cell.2026.05.025 [paper, repository]

DNA repair drives cisplatin-induced neuronal death.

Journal: Cell

Authors' code: FelixKrueger/TrimGalore (GPL-3.0)

Status: code verified, 31 files readable

[2867] doi:10.1016/j.isci.2026.116321 [paper]

Chemogenetic activation of the amygdala core nucleus increases aggression in chickens.

Journal: iScience

Status: code on request

[2868] doi:10.1016/j.tjnut.2026.101666 [paper]

Prior Pregnancies Deplete Maternal Folate Status and Increase Risks of Neural Tube Defects in Addis Ababa, Ethiopia.

Journal: The Journal of nutrition

Status: code on request

[2869] Code ↔ Paper doi:10.1016/j.ynirp.2026.100360 [paper, repository]

CIVET-Chimp: An automated pipeline for MRI-based cortical surface extraction in chimpanzees.

Journal: Neuroimage. Reports

Authors' code: visionandcognition/nhp-freesurfer (MIT), neurabenn/precon_all (MIT), CoBrALab/iterativeN4_multispectral (other)

Status: code verified, 41 files readable, 1 match

[2870] doi:10.1016/j.ynirp.2026.100363 [paper]

Narrative coherence shapes functional connectivity in default mode and frontoparietal networks.

Journal: Neuroimage. Reports

Status: code on request

[2871] doi:10.1038/s41380-026-03662-9 [paper, data]

Differential DNA methylation in blood as potential mediator of the association between ambient PM<sub>2.5</sub> and cerebrospinal fluid biomarkers of Alzheimer's disease among a cognitively normal population-based cohort.

Journal: Molecular psychiatry

Status: code on request, 1 dataset cited

[2872] Code ↔ Paper doi:10.1038/s41467-026-73818-2 [paper, repository]

Prefrontal parvalbumin neurons mediate working memory in a task demand-dependent manner.

Journal: Nature communications

Authors' code: dpalmer9/photobatch (GPL-3.0), Zenodo 7577053 (other-open)

Status: code verified, 33 files readable, 2 matches

[2873] Code ↔ Paper doi:10.1038/s41467-026-73914-3 [paper, repository]

Cortical reinstatement of causally related events sparks narrative insights by updating neural representation patterns.

Journal: Nature communications

Authors' code: Zenodo 19389961 (CC-BY-4.0), hyssong/memoryaha (MIT)

Status: code verified, 15 files readable, 4 matches

[2874] Code ↔ Paper doi:10.1038/s41467-026-73967-4 [paper, repository]

Adaptive shifts in amygdala-hippocampal theta coupling govern aversive learning and extinction.

Journal: Nature communications

Authors' code: srbsonkusare/amygdala_hippocampal_dynamics_in_conditioning-extinction (no license)

Status: code verified, 2 files readable, 2 matches

[2875] Code ↔ Paper doi:10.1038/s41531-026-01428-2 [paper, repository]

The degenerome-a novel streamline-wise approach for white matter integrity in neurodegeneration.

Journal: NPJ Parkinson's disease

Authors' code: reisert/globaltracking (no license), reisert/degenerome (no license)

Status: code verified, 102 files readable

[2876] Code ↔ Paper doi:10.1038/s41556-026-01965-1 [paper, repository]

Long-range mutual activation establishes Rho and Rac polarity during cell migration.

Journal: Nature cell biology

Authors' code: VirtualEmbryo/mechanochemical_polarization (CC-BY-SA-4.0), Zenodo 19591544 (CC-BY-SA-4.0)

Status: code verified, 52 files readable, 1 match

[2877] Code ↔ Paper doi:10.1038/s41586-026-10629-x [paper, repository]

Whole-genome duplication shaped cell-type evolution in the vertebrate brain.

Journal: Nature

Authors' code: DiracZhu1998/WGD2celltype_evolution (GPL-3.0), fmarletaz/hagfish (no license), linnarsson-lab/adult-human-brain (BSD-2-Clause), figshare 29327111 (GPL 3.0+)

Status: code verified, 209 files readable, 26 matches

[2878] Code ↔ Paper doi:10.1038/s41586-026-10631-3 [paper, repository]

A prognostic human brain network for diffuse midline glioma.

Journal: Nature

Authors' code: bchcohenlab/BIDS_to_CBIG_fMRI_Preproc2016 (no license), netneurolab/neuromaps (CC-BY-NC-SA-4.0), lead-dbs.org (no license), netstim/leaddbs (GPL-3.0)

Status: code verified, 2,069 files readable, 9 matches

[2879] Code ↔ Paper doi:10.1038/s41593-026-02289-x [paper, repository]

Cerebellar aging is spatially heterogeneous and supports cognitive resilience in later life.

Journal: Nature neuroscience

Authors' code: fdoleireuquillas/AgingCerebellum (no license)

Status: code verified, 1 file readable, 4 matches

[2880] Code ↔ Paper doi:10.1038/s41597-026-07492-w [paper, repository]

A Dataset of Microelectrode Recordings from Deep Brain Stimulation Procedures.

Journal: Scientific data

Authors' code: kasiaOsowska/Deep-Brain-Stimulation-Microelectrode-Recordings (no license)

Status: code verified, 22 files readable, 8 matches

[2881] Code ↔ Paper doi:10.1038/s44220-026-00669-7 [paper, repository]

Deviations in effective connectivity explain different hallucination subtypes in Parkinson's disease psychosis.

Journal: Nature. Mental health

Authors' code: VMiri/visual-MMN-DCM- (no license), OSF umd89 (no license)

Status: code verified, 8 files readable, 6 matches

[2882] Code ↔ Paper doi:10.1093/braincomms/fcag218 [paper, repository]

Magnetoencephalography biomarkers for assessing myelin content and neuronal function in acute optic neuritis.

Journal: Brain communications

Authors' code: y-bgx/optic-neuritis-meg-paper (no license)

Status: code verified, 5 files readable, 2 matches

[2883] Code ↔ Paper doi:10.1126/sciadv.adu9805 [paper, repository]

Restoring access to long-term social recognition memories disrupted by sleep deprivation.

Journal: Science advances

Authors' code: Zenodo 20786379 (MIT), Zenodo 20786380 (MIT)

Status: code verified, 26 files readable, 6 matches

[2884] Code ↔ Paper doi:10.1126/sciadv.aeb4265 [paper, repository]

Single-nucleus profiling reveals a core disease signature and cell type-specific vulnerabilities in early Rett syndrome.

Journal: Science advances

Authors' code: Zenodo 18462624 (CC-BY-4.0), yanl54/mecp2_hippocampus_signature (no license)

Status: code verified, 18 files readable, 5 matches

[2885] doi:10.1126/sciadv.aed3625 [paper, data]

Mice produce interneurons in the septum as a response to aversive experiences and antidepressant treatment.

Journal: Science advances

Status: data only, 1 dataset cited

[2886] doi:10.1152/jn.00063.2026 [paper, data]

Distinct mechanisms of contextual modulation for dynamic natural scenes in motion- and scene-selective cortex.

Journal: Journal of neurophysiology

Status: data only, 1 dataset cited

[2887] doi:10.1155/ijbi/5318118 [paper, data]

Brain Tumor Segmentation Using U-Net With ResNet50 Encoder for Enhanced MRI Analysis.

Journal: International journal of biomedical imaging

Status: data only, 2 datasets cited

[2888] Code ↔ Paper doi:10.1161/jaha.125.046172 [paper, repository]

Cardiovascular Disease Subtypes and Alzheimer's Disease: Phenotypic and Genetic Associations in the UK Biobank and All of Us Research Program.

Journal: Journal of the American Heart Association

Authors' code: MIILab-MTU/CVDSubtypesADCorrelation (no license)

Status: code verified, 10 files readable, 8 matches

[2889] doi:10.1186/s12984-026-02045-z [paper]

Mixed reality assisted target localization for transcranial magnetic stimulation navigation: a feasibility study.

Journal: Journal of neuroengineering and rehabilitation

Status: code on request

[2890] doi:10.1186/s13073-026-01687-x [paper, data]

Infiltrating monocyte-derived macrophages does not survive long term in stroke brain despite their dominance in the acute ischemic core and myeloid derived IGF-1 play dichotomous roles in stroke recovery.

Journal: Genome medicine

Status: data only, 1 dataset cited

[2891] Code ↔ Paper doi:10.1242/dev.204969 [paper, repository]

Oscillatory co-expression of HES1 and HES5 enables a hybrid state in a cross-repressive transcription factor regulatory motif.

Journal: Development (Cambridge, England)

Authors' code: VBiga/BIGA-HES1-HES5-2026 (GPL-3.0)

Status: code verified, 11 files readable

[2892] Code ↔ Paper doi:10.1371/journal.pcbi.1014378 [paper, repository]

A mean-field model of neural networks with PV and SOM interneurons reveals connectivity-based mechanisms of gamma oscillations.

Journal: PLoS computational biology

Authors' code: Zenodo 20391404 (CC-BY-4.0), Zenodo 20391405 (CC-BY-4.0)

Status: code verified, 2 files readable

[2893] Code ↔ Paper doi:10.21037/jtd-2026-0997 [paper, repository]

Machine learning models based on XGBoost algorithm to predict prognosis of lung cancer brain metastases.

Journal: Journal of thoracic disease

Authors' code: linastro/machine-learning-models-based-on-xgboost (no license)

Status: code verified, 6 files readable, 5 matches

[2894] Code ↔ Paper doi:10.21203/rs.3.rs-9676637/v1 [paper, repository]

A Comprehensive Benchmarking of Spatial Deconvolution and Domain Detection Methods across Diverse Tissues and Spatial Transcriptomic Technologies

Journal: Research Square (preprint)

Authors' code: Zafar-Lab/spDDB (MIT)

Status: code verified, 114 files readable, 20 matches

[2895] doi:10.21203/rs.3.rs-9901682/v1 [paper]

An Implantable Digital Bridge Enables Arm And Hand Movements After Tetraplegia

Journal: Research Square (preprint)

Status: code on request

[2896] doi:10.3389/fnagi.2026.1822185 [paper, data]

Sustained attention in dementia with Lewy bodies: a task-based fMRI study.

Journal: Frontiers in aging neuroscience

Status: data only, 1 dataset cited

[2897] Code ↔ Paper doi:10.3389/fncir.2026.1814667 [paper, repository]

A modular and flexible pipeline for intraoperative electrode reconstruction and localization in patients with brain lesions.

Journal: Frontiers in neural circuits

Authors' code: Center-For-Neurotechnology/BrainInterface3D (MIT), PerkLab/SlicerFreeSurfer (BSD-3-Clause), isl-org/MiDaS (MIT), cnr-isti-vclab/PyMeshLab (GPL-3.0)

Status: code verified, 202 files readable, 3 matches

[2898] doi:10.3389/fnhum.2026.1660402 [paper]

EEG-based emotion recognition using phase-space reconstruction with Poincaré sections: a study on the AMIGOS dataset.

Journal: Frontiers in human neuroscience

Status: code on request

[2899] Code ↔ Paper doi:10.3389/fnins.2026.1848222 [paper, repository]

A high-dimensional atlas of parvalbumin interneuron soma morphology in mouse visual and somatosensory cortex.

Journal: Frontiers in neuroscience

Authors' code: OSF 8f2nr (no license)

Status: code verified, 6 files readable, 15 matches

[2900] doi:10.3390/diagnostics16121791 [paper, data]

An Explainable Multi-Scale Deep Learning Framework for Multi-Class Brain MRI Classification.

Journal: Diagnostics (Basel, Switzerland)

Status: data only, 2 datasets cited

[2901] doi:10.3390/genes17060683 [paper]

Differential DNA Methylation of the Serotonin Receptor Signaling and Glutamatergic Synapse Pathways in Adult Twins Born Preterm.

Journal: Genes

Status: data only

[2902] Code ↔ Paper doi:10.3390/s26123690 [paper, repository]

Electroencephalogram-Based Analysis of Monomodal and Multimodal Interaction in Mixed Reality Games.

Journal: Sensors (Basel, Switzerland)

Authors' code: spkit.github.io (no license)

Status: code verified

[2903] doi:10.3390/toxics14060504 [paper, data]

Molecular Mechanisms of 6PPD and 6PPD-Q Toxicity in Neurodegenerative Diseases: A Network Toxicology and Experimental Validation Study.

Journal: Toxics

Status: data only, 1 dataset cited

[2904] doi:10.64898/2026.06.08.26355206 [paper, data]

A canary in the mind: A single baseline brain scan predicts adolescent depression and anxiety one year later

Journal: medRxiv (preprint)

Status: data only, 2 datasets cited

[2905] Code ↔ Paper doi:10.7759/cureus.110620 [paper, repository]

Top-Cited Articles on Dysphagia and Cognitive Impairment: A Scopus-Based Bibliometric Analysis of Publications Retrieved Through October 2025.

Journal: Cureus

Authors' code: taynaud/python-louvain (BSD-3-Clause)

Status: code verified, 8 files readable

Tuesday, 9 June 2026 (32 papers, 7 on this page)

[2906] Code ↔ Paper doi:10.1002/advs.75969 [paper, repository]

Accurately Deciphering Tissue Heterogeneity From Spatial Multi-Modal and Multi-Omics With STransformer.

Journal: Advanced science (Weinheim, Baden-Wurttemberg, Germany)

Authors' code: xingyili/STransformer (no license)

Status: code verified, 18 files readable, 9 matches

[2907] doi:10.1002/advs.76040 [paper, data]

Pharmacological Inhibition of FKBP51 Mitigates Early Life Adversity-Induced Social Deficits in Male Mice.

Journal: Advanced science (Weinheim, Baden-Wurttemberg, Germany)

Status: data only, 1 dataset cited

[2908] Code ↔ Paper doi:10.1002/mrm.70469 [paper, repository]

Laterally Oscillating Trajectory for Undersampling Slices: LOTUS.

Journal: Magnetic resonance in medicine

Authors' code: cfmm/matlab/matmri (MIT), Zenodo 4495476 (CC-BY-4.0)

Status: code verified, 67 files readable, 10 matches

[2909] doi:10.1016/j.ebiom.2026.106325 [paper, data]

The complement C3-microglial axis in depression of Parkinson's disease: from mechanism to therapeutic intervention.

Journal: EBioMedicine

Status: data only, 1 dataset cited

[2910] doi:10.1016/j.isci.2026.116032 [paper]

Preliminary clinical and electrophysiological findings of NAc/ALIC deep brain stimulation strategy for treatment-resistant depression.

Journal: iScience

Status: code on request

[2911] Code ↔ Paper doi:10.1016/j.isci.2026.116168 [paper, repository]

See the small lesions: Frequency-guided spatial debiasing GAN for multimodal medical image fusion.

Journal: iScience

Authors' code: wjq-111/FGSD_GAN (no license), hanna-xu/MURF (no license), Zhaozixiang1228/MMIF-EMMA (no license), tthinking/DATFuse (no license)

Status: code verified, 104 files readable, 2 matches

[2912] doi:10.1016/j.isci.2026.116299 [paper]

Genetic dissection of the role of <i>Piga</i> and <i>Pgap2</i> in the embryonic mouse brain.

Journal: iScience

Status: code on request

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