Every paper, by date: page 6

44,644 papers with a page: 24,189 with their authors' code, 4,955 with code on request, 15,495 with data only. The most recent first, 224 a page. Page 6 of 200: 5 August 2026 to 30 July 2026.

Wednesday, 5 August 2026 (41 papers, 33 on this page)

[1121] Code ↔ Paper doi:10.1038/s41467-026-75979-6 [paper, repository]

Artificial neural manifolds.

Journal: Nature communications

Authors' code: Zenodo 20688765 (CC-BY-4.0), Arvin-xd/Neural-manifold-for-short-term-prediction (no license)

Status: code verified, 138 files readable

[1122] Code ↔ Paper doi:10.1038/s41467-026-76102-5 [paper, repository]

The inherent capacity of neurons to learn order relations and support abstract reasoning.

Journal: Nature communications

Authors' code: superrrpotato/Relationship-learning (MIT), Zenodo 20729243 (MIT)

Status: code verified, 30 files readable, 4 matches

[1123] Code ↔ Paper doi:10.1038/s41467-026-76306-9 [paper, repository]

Non-invasive characterization of perivascular subarachnoid spaces.

Journal: Nature communications

Authors' code: ninafultz/csf_donuts (no license)

Status: code verified, 131 files readable, 7 matches

[1124] Code ↔ Paper doi:10.1038/s41562-026-02533-1 [paper, repository]

Fluctuations in arousal reflect latent state transitions that facilitate behavioural optimization.

Journal: Nature human behaviour

Authors' code: OSF ahynj (no license), learning-memory-and-decision-lab/Li-Marble-2025 (no license)

Status: code verified, 98 files readable, 10 matches

[1125] Code ↔ Paper doi:10.1038/s41586-026-10874-0 [paper, repository]

Amygdala astrocyte primary cilium mechanisms contribute to stress behaviours.

Journal: Nature

Authors' code: hms-dbmi/UpSetR (other)

Status: code verified, 31 files readable

[1126] doi:10.1038/s41593-026-02379-w [paper, data]

Norepinephrine and dopamine sensor crosstalk depends on local innervation density.

Journal: Nature neuroscience

Status: data only, 1 dataset cited

[1127] Code ↔ Paper doi:10.1038/s41593-026-02388-9 [paper, repository]

Hippocampal CA3 connectomics reveals a gradient of mossy fiber inputs and selective feedforward inhibition onto pyramidal cells.

Journal: Nature neuroscience

Authors' code: seung-lab/seuron (MIT), seung-lab/cloud-volume (BSD-3-Clause), navis-org/navis-mousebrains (GPL-3.0), seung-lab/ca3_paper (CC-BY-4.0), CAVEconnectome (no license)

Status: code verified, 212 files readable, 16 matches

[1128] Code ↔ Paper doi:10.1038/s41597-026-07800-4 [paper, repository]

An fNIRS Dataset for Cognitive Decoding during a Multi-day Block-design Stroop Task.

Journal: Scientific data

Authors' code: figshare 31839673 (CC-BY-4.0)

Status: code verified

[1129] Code ↔ Paper doi:10.1038/s41597-026-08034-0 [paper, repository]

A standardized naturalistic audio stimulus dataset with unsupervised labeling.

Journal: Scientific data

Authors' code: ajn3333/Sound-Standardization (MIT)

Status: code verified, 5 files readable, 3 matches

[1130] doi:10.1038/s41598-026-63915-z [paper, data]

A novel hybrid transformer-based framework (H-ConvNeXt-Swin) to classify brain tumors using MRI.

Journal: Scientific reports

Status: code on request, 1 dataset cited

[1131] Code ↔ Paper doi:10.1080/20002297.2026.2705667 [paper, repository]

Oral microbiota dysbiosis related to the cortical thinning and cognitive impairment in cerebral small vessel disease.

Journal: Journal of oral microbiology

Authors' code: zhuozhizheng/Chinese_normative_reference_and_downstream_clinical_applications (no license)

Status: code verified, 29 files readable, 1 match

[1132] doi:10.1093/braincomms/fcag300 [paper]

Assessing CT-based volumetric analysis via deep learning for idiopathic normal pressure hydrocephalus.

Journal: Brain communications

Status: code on request

[1133] Code ↔ Paper doi:10.1126/sciadv.adw5487 [paper, repository]

Early fate diversification of radial glial progenitors during corticogenesis.

Journal: Science advances

Authors' code: Zenodo 14609057 (CC-BY-4.0)

Status: code verified, 3 files readable, 2 matches

[1134] Code ↔ Paper doi:10.1126/sciadv.aec0518 [paper, repository]

Hybrid spatial organization and evidence for magnitude-independent neural coding of linguistic information during sentence production.

Journal: Science advances

Authors' code: Zenodo 20543385 (CC-BY-4.0)

Status: code verified, 41 files readable, 3 matches

[1135] Code ↔ Paper doi:10.1155/ijbi/9929121 [paper, repository]

Automated Semisupervised Measurement of Optic Nerve Sheath Diameter From CT Following Traumatic Brain Injury.

Journal: International journal of biomedical imaging

Authors' code: kaggle.com/competitions/rsna-intracranial-hemorrhage-detection (no license)

Status: dead link

[1136] doi:10.1162/imag.a.1329 [paper]

Atypical low-frequency and high-frequency neural entrainment to rhythmic audiovisual speech in adults with dyslexia.

Journal: Imaging neuroscience (Cambridge, Mass.)

Status: code on request

[1137] doi:10.1371/journal.pgen.1011909 [paper, data]

Glial cell toxicity in a Drosophila C9orf72 neurodegeneration model.

Journal: PLoS genetics

Status: data only, 1 dataset cited

[1138] Code ↔ Paper doi:10.1371/journal.pone.0352640 [paper, repository]

Automated sleep scoring in hibernating and non-hibernating American black bears.

Journal: PloS one

Authors' code: paulbrodersen/somnotate (GPL-3.0), otoien/ConsensusCode (CC0-1.0)

Status: code verified, 23 files readable

[1139] Code ↔ Paper doi:10.1371/journal.pone.0353139 [paper, repository]

No developmental fronto-parietal shift in brain activation during mental arithmetic across the lifespan: A registered report.

Journal: PloS one

Authors' code: OSF 6emdy (no license)

Status: empty repository

[1140] Code ↔ Paper doi:10.1371/journal.pone.0354021 [paper, repository]

A genetic algorithm for self-supervised models of oscillatory neurodynamics.

Journal: PloS one

Authors' code: HNXJ/GSDR (no license), supp:PMC13440876/pone.0354021.s002.zip (no license)

Status: code verified, 36 files readable, 7 matches

[1141] Code ↔ Paper doi:10.1371/journal.pone.0354511 [paper, repository]

TokenUNet: A new case for transformers integration in efficient and interpretable 3D UNets for brain imaging segmentation.

Journal: PloS one

Authors' code: MedMaxLab/tokenunet (no license)

Status: code verified, 18 files readable, 7 matches

[1142] Code ↔ Paper doi:10.1523/jneurosci.0038-26.2026 [paper, repository]

Multidimensional Feature Tuning in Category Selective Areas of Human Visual Cortex.

Journal: The Journal of neuroscience : the official journal of the Society for Neuroscience

Authors' code: levandyck/roidims (no license)

Status: code verified, 19 files readable, 11 matches

[1143] doi:10.1523/jneurosci.2002-24.2026 [paper, data]

Astrocyte TrkB.T1 Deficiency Disrupts Glutamatergic Synaptogenesis and Astrocyte-Synapse Interactions.

Journal: The Journal of neuroscience : the official journal of the Society for Neuroscience

Status: data only, 1 dataset cited

[1144] Code ↔ Paper doi:10.21203/rs.3.rs-10335768/v1 [paper, repository]

Interneurons in the subplate are associated with cortical maturation across the foetal human cortex

Journal: Research Square (preprint)

Authors' code: OSF 8s6ka (no license)

Status: code verified, 3 files readable

[1145] doi:10.3389/fncel.2026.1901103 [paper]

Loss of epigenetic adaptation to a high-fat diet in alpha-synuclein transgenic mice.

Journal: Frontiers in cellular neuroscience

Status: data only

[1146] doi:10.3389/fphar.2026.1895800 [paper, data]

NDP-MSH rescues LPS-induced neuroinflammation, synaptic deficits, and depressive-like behaviors in mice: involvement of MC1R-cAMP/PKA signaling.

Journal: Frontiers in pharmacology

Status: data only, 1 dataset cited

[1147] Code ↔ Paper doi:10.3389/fphys.2026.1886058 [paper, repository]

Xanthohumol and its non-estrogenic derivatives link to the gut-liver-brain axis to improve cognition in mice with diet-induced obesity.

Journal: Frontiers in physiology

Authors' code: aalexiev/XanthohumolMicrobiome (no license)

Status: code verified, 15 files readable, 9 matches

[1148] doi:10.3389/fpsyg.2026.1749078 [paper, data]

Neural correlates of affective self-positivity bias in first and second languages.

Journal: Frontiers in psychology

Status: data only, 1 dataset cited

[1149] doi:10.3390/bios16080421 [paper]

GLSTNet: A Global-Local Spatial Relations and Temporal Dynamics Network for EEG-Based Emotion Recognition.

Journal: Biosensors

Status: code on request

[1150] doi:10.3390/s26154963 [paper, data]

NeuroSPFNet: Vision-Language Semantic Prior-Guided Frequency-Enhanced Network for Brain Tumor Segmentation in Multimodal MRI.

Journal: Sensors (Basel, Switzerland)

Status: data only, 1 dataset cited

[1151] Code ↔ Paper doi:10.7554/elife.110170 [paper, repository]

Efficient and reproducible pipelines for spike sorting large-scale electrophysiology data.

Journal: eLife

Authors' code: AllenNeuralDynamics/aind-ephys-pipeline (MIT), AllenNeuralDynamics/aind-ephys-hybrid-benchmark (MIT), hub.docker.com/r/nextflow (no license), Zenodo 19481268 (CC-BY-4.0), AllenNeuralDynamics/aind-data-schema-models (MIT)

Status: code verified, 96 files readable, 4 matches

[1152] doi:10.7717/peerj.21593 [paper, data]

Investigation of brain connectivity alteration in the non-severe traumatic brain injury: an emotional condition study.

Journal: PeerJ

Status: data only, 1 dataset cited

[1153] Code ↔ Paper doi:10.7717/peerj.21623 [paper, repository]

Observable signs of concussion in professional slap fighting using established video review protocols for professional sports: frequency, predictors, and implications for public concussion recognition awareness.

Journal: PeerJ

Authors' code: supp:PMC13452423/peerj-14-21623-s004.rmd (no license)

Status: code verified, 1 file readable, 1 match

Tuesday, 4 August 2026 (27 papers)

[1154] Code ↔ Paper doi:10.1002/mrm.70496 [paper, repository]

A Deep Nonlinear Subspace Modeling and Reconstruction for Diffusion-Weighted Imaging Using Denoising Auto-Encoder.

Journal: Magnetic resonance in medicine

Authors' code: ZhengguoTan/sigpy (BSD-3-Clause), JuliusGlaser/LASER (no license)

Status: code verified, 144 files readable, 5 matches

[1155] doi:10.1007/s11033-026-12462-x [paper, data]

METTL3-dependent m⁶A maturation of miR-140-3p contributes to hippocampal neuronal apoptosis through the OTX2/Wnt/β-catenin axis under chronic stress.

Journal: Molecular biology reports

Status: data only, 1 dataset cited

[1156] doi:10.1007/s44470-026-00131-6 [paper]

Sleep homeostasis impairment across obstructive sleep apnea severity: findings from a population-based cohort study.

Journal: Journal of clinical sleep medicine : JCSM : official publication of the American Academy of Sleep Medicine

Status: code on request

[1157] doi:10.1016/j.cell.2026.07.023 [paper, data]

Metabolic atlas of early human cortex reveals glycolytic remodeling and pentose phosphate pathway control of cell fate transitions.

Journal: Cell

Status: code on request, 1 dataset cited

[1158] doi:10.1016/j.ebiom.2026.106416 [paper, data]

Establishing the role of ZBTB20 mutations in GnRH deficiency and impaired neurogenesis in the subventricular zone: a human cohort and animal model study.

Journal: EBioMedicine

Status: data only, 1 dataset cited

[1159] doi:10.1016/j.isci.2026.116918 [paper]

Batrachotoxin-sensitive sodium channels in toxic birds challenge "target mutation" strategy of toxin autoresistance.

Journal: iScience

Status: code on request

[1160] doi:10.1016/j.xpro.2026.104720 [paper, data]

Protocol using AGO-APP for isolation and sequencing of argonaute-bound miRNAs in specific neuronal subtypes of the mouse brain.

Journal: STAR protocols

Status: data only, 1 dataset cited

[1161] Code ↔ Paper doi:10.1038/s41467-026-76132-z [paper, repository]

ATP13A4 gates extracellular polyamine levels to control excitatory synaptogenesis.

Journal: Nature communications

Authors' code: Eroglu-Lab/In-Vitro-Sholl (MIT), emsm3eus-crypto/van-Veen-et-al.-2026 (MIT), eroglu-lab/irala_2024_image_analysis (no license), Eroglu-Lab (no license), Zenodo 10779514 (CC-BY-4.0), Zenodo 20490523 (MIT), Zenodo 20137621 (MIT)

Status: code verified, 30 files readable, 3 matches

[1162] doi:10.1038/s41467-026-76183-2 [paper, data]

Vestibular nucleus stimulation for ameliorating locomotor dynamics in a Parkinsonian mouse model.

Journal: Nature communications

Status: code on request, 1 dataset cited

[1163] Code ↔ Paper doi:10.1038/s41467-026-76341-6 [paper, repository]

Neonatal inflammation disrupts a temporally restricted postnatal Numb-enriched microglial state in mice.

Journal: Nature communications

Authors' code: fafax093-design/scRNA-neonatal-microglia-analyses-2025 (no license), Zenodo 20795495 (CC-BY-4.0)

Status: code verified, 40 files readable, 20 matches

[1164] Code ↔ Paper doi:10.1038/s41593-026-02367-0 [paper, repository]

A reproducible three-dimensional model of human brain tissue to investigate physiological and disease-associated microglia phenotypes.

Journal: Nature neuroscience

Authors' code: jsschrepping/r_docker (MIT), gitlab.dzne.de/ag-beyer/singlecell_analysis_3btm (no license)

Status: code verified, 20 files readable, 18 matches

[1165] doi:10.1038/s41598-026-61891-y [paper, data]

A class-wise quantum relational calibration network for brain tumor diagnosis.

Journal: Scientific reports

Status: data only, 1 dataset cited

[1166] Code ↔ Paper doi:10.1073/pnas.2608703123 [paper, repository]

Claims of sex-dependent effects in the behavioral and brain sciences are infrequently supported by valid statistical comparisons.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: OSF 59djk (no license)

Status: empty repository

[1167] doi:10.1111/bpa.70129 [paper]

Brain metastasis-associated fibroblasts shape the tumour microenvironment to enhance cancer cell invasion.

Journal: Brain pathology (Zurich, Switzerland)

Status: data only

[1168] Code ↔ Paper doi:10.1162/imag.a.1325 [paper, repository]

Decoding everyday levels of musical training from subcortical white-matter architecture.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: MassimoLumaca/neuroARC (no license), MassimoLumaca/neuroTraining (no license)

Status: code verified, 15 files readable, 7 matches

[1169] Code ↔ Paper doi:10.1162/imag.a.1326 [paper, repository]

RAVEN: Robust, generalizable, multi-resolution structural MRI upsampling using autoencoders.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: richzhang/PerceptualSimilarity (BSD-2-Clause), waadgo/raven (MIT)

Status: code verified, 363 files readable, 9 matches

[1170] doi:10.1186/s40478-026-02388-7 [paper, data]

Galectin-3 is elevated in Müller glia in human glaucomatous eyes and ocular hypertensive rat eyes and associated with phagocytosing states.

Journal: Acta neuropathologica communications

Status: data only, 3 datasets cited

[1171] doi:10.1186/s40478-026-02399-4 [paper, data]

Overactive EAAT1 Cl<sup>-</sup> channels impair GABAergic tonic inhibition in SLC1A3-associated episodic ataxia.

Journal: Acta neuropathologica communications

Status: data only, 1 dataset cited

[1172] Code ↔ Paper doi:10.1523/eneuro.0012-26.2026 [paper, repository]

I Can't Hear You Both at the Same Time: A Temporal Dilemma During Inter-Regional Communication.

Journal: eNeuro

Authors' code: tedyUM/CommunicationDilemma_models (no license)

Status: code verified, 8 files readable

[1173] Code ↔ Paper doi:10.21203/rs.3.rs-10218667/v1 [paper, repository]

Combining ultra-flexible electrodes with two-photon imaging to illuminate brain-wide neural dynamics

Journal: Research Square (preprint)

Authors' code: bichanw/RRR (no license)

Status: code verified, 18 files readable, 2 matches

[1174] Code ↔ Paper doi:10.21203/rs.3.rs-10384662/v1 [paper, repository]

Temporal Gating by Chandelier Cells Encodes Signed Prediction Errors

Journal: Research Square (preprint)

Authors' code: bendor-lab/SETA-model_allen_analysis (no license)

Status: dead link

[1175] Code ↔ Paper doi:10.21203/rs.3.rs-10419673/v1 [paper, repository]

Rapid value learning reveals generalized and context-dependent codes in frontal cortex

Journal: Research Square (preprint)

Authors' code: elenagutierr/learning_paper (no license)

Status: code verified, 15 files readable, 7 matches

[1176] doi:10.3389/fmicb.2026.1811435 [paper, data]

Research on the role of gut microbiota metabolites in autism by multi-omics and network pharmacology.

Journal: Frontiers in microbiology

Status: data only, 1 dataset cited

[1177] doi:10.3390/jcm15156046 [paper]

EEG Connectivity Signatures in Migraine and Tension-Type Headache: A Multimethod ROI-Based Functional Connectivity and Machine-Learning Analysis.

Journal: Journal of clinical medicine

Status: code on request

[1178] doi:10.7554/elife.102189 [paper, data]

Thalamo-accumbal circuit adaptations following extended oxycodone abstinence.

Journal: eLife

Status: data only, 1 dataset cited

[1179] Code ↔ Paper doi:10.7554/elife.106081 [paper, repository]

Heritability of movie-evoked brain activity and connectivity.

Journal: eLife

Authors' code: dsclab42/Gruskin-eLife2026 (MIT)

Status: code verified, 28 files readable, 11 matches

[1180] doi:10.7554/elife.109640 [paper, data]

Concurrent category-selective neural activity across the ventral occipito-temporal cortex supports a non-hierarchical view of human visual recognition.

Journal: eLife

Status: data only, 1 dataset cited

Monday, 3 August 2026 (27 papers)

[1181] doi:10.1002/advs.76989 [paper]

Targeting Hippocampal PTEN Suppresses Ferroptosis and Rescues Cognitive Decline in Alzheimer's Disease via Dual AKT/GSK3β/Nrf2 and AKT/STAT3 Axes.

Journal: Advanced science (Weinheim, Baden-Wurttemberg, Germany)

Status: data only

[1182] Code ↔ Paper doi:10.1007/s00415-026-14028-0 [paper, repository]

Personality change after traumatic brain injury: a systematic review and meta-analysis.

Journal: Journal of neurology

Authors' code: vaughanbell/personality-change-TBI-meta (MIT)

Status: code verified, 2 files readable, 1 match

[1183] doi:10.1007/s00415-026-14034-2 [paper, data]

Similarities and differences in the late-onset GM2 gangliosidoses: Tay-Sachs and Sandhoff diseases.

Journal: Journal of neurology

Status: data only, 8 datasets cited

[1184] doi:10.1016/j.isci.2026.116930 [paper, data]

HCAR1-mediated lactate signaling modulates motor behavior and regulates spontaneous firing in Purkinje cells.

Journal: iScience

Status: code on request, 1 dataset cited

[1185] doi:10.1016/j.isci.2026.117015 [paper]

Dynamic functional connectivity variability may explain hypoxia-induced cognitive impairment at high-altitude.

Journal: iScience

Status: code on request

[1186] doi:10.1016/j.isci.2026.117017 [paper, data]

Across species identification of genes bridging neurological and reproductive functions in mammals.

Journal: iScience

Status: data only, 2 datasets cited

[1187] Code ↔ Paper doi:10.1016/j.isci.2026.117048 [paper, repository]

Dynamic alterations in cardiac autonomic regulation during recurrent generalized seizures.

Journal: iScience

Authors' code: CXO531/ElectroMap (BSD-3-Clause)

Status: code verified, 77 files readable, 2 matches

[1188] Code ↔ Paper doi:10.1016/j.psj.2026.107561 [paper, repository]

Integrated Analysis of SNPs and Structural Variations via High-depth Whole-genome Sequencing Reveals the Genetic Architecture and Optimizes Genomic Prediction in Chickens.

Journal: Poultry science

Authors' code: jasmine/jasmine (MIT), HaoqiangYe/GPDLBP (MIT)

Status: code verified, 292 files readable, 3 matches

[1189] doi:10.1038/s41467-026-75890-0 [paper, data]

Serotonergic psychedelics induce distinct patterns of metabolic activity and covariance within biologically informed rat brain networks.

Journal: Nature communications

Status: data only, 1 dataset cited

[1190] Code ↔ Paper doi:10.1038/s41593-026-02350-9 [paper, repository]

Probing inter-areal computations with a two-photon holographic mesoscope.

Journal: Nature neuroscience

Authors' code: mesoholo/mesoholo (no license)

Status: code verified, 102 files readable, 8 matches

[1191] Code ↔ Paper doi:10.1038/s41593-026-02387-w [paper, repository]

Developing mouse inhibitory neuron single-cell transcriptomes reveal distinct modes of cell-type diversification.

Journal: Nature neuroscience

Authors' code: Limlab-VIBCBD/Dev-SST-atlas (no license)

Status: code verified, 17 files readable, 23 matches

[1192] Code ↔ Paper doi:10.1038/s44161-026-00844-0 [paper, repository]

Pericyte K<sub>ATP</sub> channel hyperactivity redistributes cortical blood flow in a CADASIL mouse model.

Journal: Nature cardiovascular research

Authors' code: ntsoukias/SVD-Blood-Flow-Simulation (other), Zenodo 20722612 (CC-BY-4.0)

Status: code verified, 12 files readable, 5 matches

[1193] doi:10.1038/s44321-026-00482-w [paper, data]

Reducing CETP activity prevents memory decline in an Alzheimer's disease mouse model.

Journal: EMBO molecular medicine

Status: data only, 1 dataset cited

[1194] doi:10.1073/pnas.2604124123 [paper]

Bladder mucosal afferents detect UTI and aid pathogen clearance.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: code on request

[1195] Code ↔ Paper doi:10.1093/braincomms/fcag299 [paper, repository]

Stable insular spectral patterns underlie dynamic pain encoding in chronic neuropathic pain.

Journal: Brain communications

Authors' code: UVA-LIU/UVA-LIU-uva-insular-iEEG-neuropathic-pain-analysis (MIT)

Status: code verified, 9 files readable, 4 matches

[1196] doi:10.1101/gad.353596.125 [paper, data]

Functional divergence of Capicua isoforms explains differential tissue vulnerability in neurological disease.

Journal: Genes & development

Status: data only, 1 dataset cited

[1197] Code ↔ Paper doi:10.1177/11779322261475822 [paper, repository]

Unveiling Carbonic Anhydrase VIII, X, XI Expression in Cancer and Neurological Diseases Through Integrated Bioinformatics Approaches.

Journal: Bioinformatics and biology insights

Authors' code: Zenodo 12796528 (CC-BY-4.0)

Status: code verified

[1198] Code ↔ Paper doi:10.1371/journal.pcbi.1014576 [paper, repository]

A synthetic 3D human cerebrovascular model informed by histology for simulating the cortical depth-dependent BOLD fMRI signal.

Journal: PLoS computational biology

Authors' code: baezprecisionimaging-source/3dVAMOS (GPL-3.0)

Status: code verified, 1 file readable

[1199] Code ↔ Paper doi:10.1371/journal.pcbi.1014590 [paper, repository]

Real-time GPU-accelerated coupled cardiac system: Integrating bidirectional interactions between living optogenetic monolayers and computational simulations.

Journal: PLoS computational biology

Authors' code: younesvalibeigi/Coupled-Cardiac-System (MIT)

Status: code verified, 1,593 files readable, 3 matches

[1200] doi:10.1371/journal.pone.0343481 [paper, data]

Food preference and gender are associated with medial/frontopolar prefrontal regions functional near-infrared spectroscopy responses during eating: An exploratory study in young adults.

Journal: PloS one

Status: data only, 1 dataset cited

[1201] Code ↔ Paper doi:10.3389/fbioe.2026.1824839 [paper, repository]

Synergy-based feedforward with minimal feedback control predicts walking over multiple cycles.

Journal: Frontiers in bioengineering and biotechnology

Authors' code: simtk.org (no license), simtk.org/projects/synergyfeedback (no license)

Status: code verified

[1202] Code ↔ Paper doi:10.3389/fncir.2026.1783892 [paper, repository]

Representations of facial features and surface quality in monkey area TE compared to neural network models.

Journal: Frontiers in neural circuits

Authors' code: rgeirhos/Stylized-ImageNet (MIT)

Status: code verified, 14 files readable, 1 match

[1203] doi:10.3389/fneur.2026.1879894 [paper]

Perivascular diffusion and white matter free water improve identification of cognitive impairment in cerebral small vessel disease.

Journal: Frontiers in neurology

Status: code on request

[1204] Code ↔ Paper doi:10.3389/fneur.2026.1895626 [paper, repository]

Data-centric strategies enable cross-center generalization of convolutional neural networks for CT brain extraction.

Journal: Frontiers in neurology

Authors' code: aqqush/CT_BET (no license)

Status: code verified, 6 files readable

[1205] doi:10.3389/fnins.2026.1785001 [paper, data]

A single-cell transcriptomic atlas of the periventricular proliferative zone in the late gestation fetal brain in the pigtail macaque.

Journal: Frontiers in neuroscience

Status: data only, 1 dataset cited

[1206] Code ↔ Paper doi:10.3389/fnins.2026.1803569 [paper, repository]

A user-friendly graphical user interface for paw touch classification in rodent cylinder testing.

Journal: Frontiers in neuroscience

Authors' code: Zenodo 15750960 (CC-BY-4.0), tyjo22/a-user-friendly-gui-for-paw-touch-classification-in-rodent-cylinder-testing (no license)

Status: code verified, 2 files readable

[1207] doi:10.3390/ijms27156964 [paper, data]

Senescence Markers and Associated Transcriptomic Changes Are Expressed at Early Stages of Alzheimer's Neuropathology but Are Not Independently Related to Dementia.

Journal: International journal of molecular sciences

Status: data only, 1 dataset cited

Saturday, 1 August 2026 (95 papers)

[1208] Code ↔ Paper doi:10.1002/alz.71567 [paper, repository]

Associations of dementia polyexposure scores to Alzheimer's disease endophenotypes in a diverse population.

Journal: Alzheimer's & dementia : the journal of the Alzheimer's Association

Authors' code: AndrewsLabUCSF/CRS-analysis (MIT)

Status: code verified, 6 files readable, 13 matches

[1209] doi:10.1002/alz.71651 [paper]

Longitudinal effects of physical activity on sleep in association with hippocampal-amygdala subfield structure and functional connectivity in Alzheimer's disease.

Journal: Alzheimer's & dementia : the journal of the Alzheimer's Association

Status: code on request

[1210] doi:10.1002/alz.71680 [paper, data]

A combined artificial intelligence-wet lab approach identifies a pivotal role of the NAD<sup>+</sup>-mitophagy axis on aging and neurodegeneration.

Journal: Alzheimer's & dementia : the journal of the Alzheimer's Association

Status: data only, 1 dataset cited

[1211] Code ↔ Paper doi:10.1002/alz.71711 [paper, repository]

Exploring longitudinal relationships among Alzheimer's disease biomarkers.

Journal: Alzheimer's & dementia : the journal of the Alzheimer's Association

Authors' code: WashUFluidBiomarkers/Dynamic-Visualization (MIT)

Status: code verified, 9 files readable, 2 matches

[1212] Code ↔ Paper doi:10.1002/alz.71745 [paper, repository]

Regional astrocyte dysregulation and altered glymphatic-related markers in Alzheimer's disease frontal cortex.

Journal: Alzheimer's & dementia : the journal of the Alzheimer's Association

Authors' code: xanthippilouka/Human_Brain_Image_Analysis (no license)

Status: code verified, 8 files readable, 2 matches

[1213] Code ↔ Paper doi:10.1002/alz.71760 [paper, repository]

Chronic stress, social support, and domain-specific cognitive decline in HABS-HD.

Journal: Alzheimer's & dementia : the journal of the Alzheimer's Association

Authors' code: jkleeri/mielkelab_chronicstress_socialsupport_HABSHD (no license)

Status: code verified, 2 files readable, 2 matches

[1214] Code ↔ Paper doi:10.1002/brb3.71581 [paper, repository]

Blunted Reward Responsiveness During Social Feedback: Associations with Peer Victimization and Anhedonia in Socially Anxious Adolescents.

Journal: Brain and behavior

Authors' code: daisylabhub/ARSA (no license)

Status: code verified, 6 files readable, 3 matches

[1215] Code ↔ Paper doi:10.1002/brb3.71654 [paper, repository]

HIF-1α and HIF-2α Are Upregulated in the Hippocampus but Not in the Medial Prefrontal Cortex in Experimental PTSD.

Journal: Brain and behavior

Authors' code: DotardOneClick/PTSD_hypoxia_markers (MIT)

Status: code verified, 5 files readable, 4 matches

[1216] Code ↔ Paper doi:10.1002/brb3.71659 [paper, repository]

Offset Analgesia and Onset Hyperalgesia: A Comparison Between Women With Non-Suicidal Self-Injury and Healthy Women.

Journal: Brain and behavior

Authors' code: OSF x8hjk (no license)

Status: code verified, 3 files readable

[1217] Code ↔ Paper doi:10.1002/brb3.71667 [paper, repository]

Exploring Gray Matter Alterations in Post-Stroke Patients: A Structural Covariance Analysis.

Journal: Brain and behavior

Authors' code: JLhos-fmri/BrainCovarianceConnectToolkitV2.1 (GPL-3.0)

Status: code verified, 189 files readable

[1218] doi:10.1002/brb3.71679 [paper]

Limonene Modulates Event-Related Potentials in a 2-Back Working Memory Task.

Journal: Brain and behavior

Status: code on request

[1219] doi:10.1002/brb3.71700 [paper, data]

Downregulation of Lgals3 Alleviates Inflammatory Response and Apoptosis in a Mouse Model of Cerebral Ischemia/Reperfusion Injury.

Journal: Brain and behavior

Status: data only, 1 dataset cited

[1220] doi:10.1002/ccs3.70041 [paper, data]

The suppressor of cytokine signaling 3 regulates glioma stem cell maintenance and immune microenvironment through signal transducer and activator of transcription 3 signaling.

Journal: Journal of cell communication and signaling

Status: data only, 1 dataset cited

[1221] doi:10.1002/cne.70197 [paper, data]

Anatomical Investigation Reveals a Second Olfactory System in Locusts.

Journal: The Journal of comparative neurology

Status: data only, 1 dataset cited

[1222] doi:10.1002/cns.71043 [paper]

Multimodal Neuroimaging-Based Machine Learning Models Leveraging Cerebral Morphometry and Glymphatic Parameters Predict Short-Term Post-Programming STN-DBS Motor Response in Parkinson's Disease.

Journal: CNS neuroscience & therapeutics

Status: code on request

[1223] doi:10.1002/cns.71074 [paper, data]

Bard1-Mediated Regulation of Hnrnpa2b1 Ubiquitination and Protein Stability Contributes to Neuronal Ferroptosis and Cognitive Dysfunction Following Ischemic Stroke.

Journal: CNS neuroscience & therapeutics

Status: data only, 1 dataset cited

[1224] doi:10.1002/cns.71075 [paper, data]

Neuroprotective Role of E3 Ubiquitin Ligase TRIM2 in Parkinson's Disease: Attenuation of Oxidative Stress and Apoptosis via Promoting ELAVL1 Ubiquitination.

Journal: CNS neuroscience & therapeutics

Status: data only, 1 dataset cited

[1225] doi:10.1002/cns.71080 [paper, data]

Vorinostat Mitigates Early Brain Injury Following Subarachnoid Hemorrhage Through Modulation of the C3aR1/TGF-β/Smad Pathway.

Journal: CNS neuroscience & therapeutics

Status: data only, 1 dataset cited

[1226] doi:10.1002/cns.71096 [paper]

Dynamic Hemispheric Lateralization of Naturalistic Emotional Processing After Unilateral Stroke: An EEG Study.

Journal: CNS neuroscience & therapeutics

Status: code on request

[1227] Code ↔ Paper doi:10.1002/cns.71114 [paper, repository]

Dynamic Functional Connectivity Changes in Cortical and Cortico-Striatal Strokes in Mice.

Journal: CNS neuroscience & therapeutics

Authors' code: Aswendt-Lab/AIDAmri (GPL-3.0), doi:10.12751/g-node.pmvtz1 (no license)

Status: code verified, 111 files readable, 5 matches

[1228] doi:10.1002/ctm2.70756 [paper, data]

Chronic stress-induced brain-derived small extracellular vesicles promote colorectal cancer through Treg differentiation.

Journal: Clinical and translational medicine

Status: data only, 1 dataset cited

[1229] Code ↔ Paper doi:10.1002/glia.70181 [paper, repository]

Female Mice Show Stronger Time-of-Day Modulation of Astrocytic Ca<sup>2+</sup> Activity in the Sleep-Regulatory Ventrolateral Preoptic Nucleus.

Journal: Glia

Authors' code: louzonca/AstroNet (CC0-1.0)

Status: code verified, 16 files readable, 2 matches

[1230] Code ↔ Paper doi:10.1002/hbm.70586 [paper, repository]

Comparison of the Relationships Between Body Size and Cardiorespiratory Fitness With High Frequency Head-Motion Contamination in fMRI.

Journal: Human brain mapping

Authors' code: grattonlab/gratton2020_ni_hfmotion (GPL-3.0)

Status: code verified, 12 files readable, 1 match

[1231] Code ↔ Paper doi:10.1002/hbm.70600 [paper, repository]

A Data-Driven Closed-Loop Control Approach to Drive Neural State Transitions for Mechanistic Insight.

Journal: Human brain mapping

Authors' code: humml-lab/fmri-control (MIT)

Status: code verified, 32 files readable, 11 matches

[1232] Code ↔ Paper doi:10.1002/hbm.70621 [paper, repository]

Optimising 7T-fMRI for Imaging Regions of Magnetic Susceptibility.

Journal: Human brain mapping

Authors' code: slfrisby/7TOptimisation (no license), mrc-cbu/riksneurotools (GPL-3.0), DrMichaelLindner/MAP4SL (CC-BY-4.0), mrc-cbu.cam.ac.uk/publications/opendata (no license)

Status: code verified, 144 files readable, 22 matches

[1233] Code ↔ Paper doi:10.1002/hbm.70624 [paper, repository]

Exploring the Sensitivity Limits of Neuronal Current Imaging With MRI and MEG in the Human Brain.

Journal: Human brain mapping

Authors' code: milecap/MRIMEG_pipelines (MIT)

Status: code verified, 24 files readable, 3 matches

[1234] doi:10.1002/hbm.70629 [paper, data]

Characterising the Diffusion Functional Signature of Negative BOLD With Interleaved TMS-fMRI in the Human Brain.

Journal: Human brain mapping

Status: data only, 2 datasets cited

[1235] doi:10.1002/jcsm.70357 [paper, data]

Early and Divergent Lipid Mediator Remodelling in Fast Versus Slow Skeletal Muscles of Female hSOD1<sup>G93A</sup> Mice.

Journal: Journal of cachexia, sarcopenia and muscle

Status: data only, 1 dataset cited

[1236] Code ↔ Paper doi:10.1002/jdn.70161 [paper, repository]

Spatio-Temporal Dynamics of Macroglial Cell Organization and Proximity to Blood Vessels During Postnatal Development.

Journal: International journal of developmental neuroscience : the official journal of the International Society for Developmental Neuroscience

Authors' code: orion-cirb/VeCell (no license)

Status: code verified, 11 files readable, 4 matches

[1237] doi:10.1002/jev2.70347 [paper]

Lymphatic Drainage of Cerebrospinal Fluid Using Lymph Node Seeker 64Cu-Labeled Gram-Negative Bacterial Extracellular Vesicles With Positron Emission Tomography (PET).

Journal: Journal of extracellular vesicles

Status: code on request

[1238] Code ↔ Paper doi:10.1002/mp.70599 [paper, repository]

Accurate estimation of intravoxel incoherent motion parameters based on implicit neural representation.

Journal: Medical physics

Authors' code: Kent0n-Li/IVIM-INR (no license)

Status: code verified, 2 files readable, 4 matches

[1239] Code ↔ Paper doi:10.1002/nbm.70342 [paper, repository]

Task-Evoked Functional Activation and Coupling With CSF Flow Detected in the Human Brain With Ultrashort Echo Time fMRI at 7 T.

Journal: NMR in biomedicine

Authors' code: BrainInnovation/physiocorr (MIT)

Status: code verified, 5 files readable, 2 matches

[1240] Code ↔ Paper doi:10.1002/nbm.70349 [paper, repository]

Susceptibility Source Separation Unveils Paramagnetic and Diamagnetic Trajectories in Healthy Brains From 5 to 90 Years.

Journal: NMR in biomedicine

Authors' code: SNU-LIST/chi-separation (no license), SNU-LIST/chi_sepnet (other), AMRI-Lab/APART-QSM (no license)

Status: code verified, 23 files readable, 4 matches

[1241] Code ↔ Paper doi:10.1002/nbm.70353 [paper, repository]

Automated Surface-Based Segmentation of Deep Gray Matter Regions Based on Diffusion Tensor Images Reveals Unique Age Trajectories Over the Healthy Lifespan.

Journal: NMR in biomedicine

Authors' code: LittleBrainLab/microbrain (MIT)

Status: code verified, 20 files readable, 6 matches

[1242] doi:10.1002/nbm.70355 [paper]

High-Resolution Diffusion Kurtosis Imaging of Hippocampus Subfields Across the Healthy Lifespan.

Journal: NMR in biomedicine

Status: code on request

[1243] Code ↔ Paper doi:10.1002/pchj.70103 [paper, repository]

Defensive Strategies and Handling Paths in Intimate Relationship Conflicts: A Dynamic Game Model From the Perspective of Emotional Regulation.

Journal: PsyCh journal

Authors' code: projectmesa/mesa (Apache-2.0)

Status: code verified, 167 files readable

[1244] doi:10.1002/pchj.70113 [paper]

Shared and Unique Patterns of Dysregulated Dual Systems Between Adolescent Problematic Video Gaming and ADHD.

Journal: PsyCh journal

Status: code on request

[1245] Code ↔ Paper doi:10.1002/pro.70695 [paper, repository]

MIF-MAPMS: Enhancing identification of myelin autoantigenic peptides in multiple sclerosis through multimodal information fusion.

Journal: Protein science : a publication of the Protein Society

Authors' code: lawankorn-m/MIF-MAPMS (no license)

Status: code verified, 6 files readable, 6 matches

[1246] Code ↔ Paper doi:10.1016/j.isci.2026.117010 [paper, repository]

Deep learning-assisted mapping of dendritic spines using sequential 2D two-photon calcium imaging.

Journal: iScience

Authors' code: dcupolillo/ROIpy (MIT), Zenodo 21334250 (MIT), dcupolillo/spyne (no license), Zenodo 21334656 (CC-BY-4.0), dcupolillo/calcium_event_classifier (no license), Zenodo 21334890 (CC-BY-4.0)

Status: code verified, 182 files readable, 21 matches

[1247] doi:10.1021/acs.jmedchem.6c01461 [paper, data]

Dual Inhibitors of p38α Mitogen-Activated Protein Kinase and Butyrylcholinesterase for the Modulation of Neuroinflammation and Cognitive Dysfunction.

Journal: Journal of medicinal chemistry

Status: data only, 7 datasets cited

[1248] doi:10.1021/acs.jmedchem.6c01882 [paper, data]

Selective Brain-Penetrant TTBK1 Inhibitors Modulate TDP-43 Pathology and Rescue Cognitive Deficits in a Mouse Model of TDP-43 Proteinopathy.

Journal: Journal of medicinal chemistry

Status: data only, 4 datasets cited

[1249] doi:10.1021/acs.jpclett.6c01968 [paper, data]

Light-Induced Neuron-Like Bursts.

Journal: The journal of physical chemistry letters

Status: data only, 2 datasets cited

[1250] doi:10.1021/acs.jproteome.5c01173 [paper, data]

Proteomic Analysis Identifies ATE1-Dependent Arginylation Dysregulation across Meningioma Grades.

Journal: Journal of proteome research

Status: data only, 1 dataset cited

[1251] doi:10.1021/acschemneuro.6c00342 [paper, data]

5-HT4 Receptor Ligand RS67333 Modulates Striatal Acetylcholine and Dopamine Release via the Inhibition of Acetylcholinesterase.

Journal: ACS chemical neuroscience

Status: data only, 1 dataset cited

[1252] doi:10.1038/s41398-026-04333-7 [paper]

Cardiac vagal activity during in-vivo threat exposure is associated with within-session inhibition of fear and avoidance.

Journal: Translational psychiatry

Status: code on request

[1253] Code ↔ Paper doi:10.1038/s41467-026-75882-0 [paper, repository]

A massively parallel CRISPR-based screening platform for modifiers of neuronal depolarization.

Journal: Nature communications

Authors' code: noamteyssier/sgcount (MIT), noamteyssier/crispr_screen (MIT), noamteyssier/adpbulk (MIT), noamteyssier/cshift (MIT), noamteyssier/idea (MIT), Zenodo 12774353 (CC-BY-4.0), Zenodo 12774305 (CC-BY-4.0), Zenodo 20736458 (MIT), Zenodo 20736463 (MIT), Zenodo 20736467 (MIT)

Status: code verified, 140 files readable, 1 match

[1254] doi:10.1038/s41598-026-62977-3 [paper, data]

Hyperparameter-optimized deep learning for next-day pH forecasting in distributed water quality monitoring systems.

Journal: Scientific reports

Status: data only, 1 dataset cited

[1255] Code ↔ Paper doi:10.1093/bioinformatics/btag424 [paper, repository]

SlotDeconv: spatial transcriptomics deconvolution via diversity-constrained prototype learning and spatial refinement.

Journal: Bioinformatics (Oxford, England)

Authors' code: HannahNJIT/SlotDeconv (MIT)

Status: code verified, 8 files readable, 4 matches

[1256] Code ↔ Paper doi:10.1093/bioinformatics/btag430 [paper, repository]

SPIDER: spatially integrated denoising via embedding regularization with single cell supervision.

Journal: Bioinformatics (Oxford, England)

Authors' code: Zenodo 20613921 (CC-BY-4.0)

Status: code verified, 11 files readable, 7 matches

[1257] Code ↔ Paper doi:10.1093/bioinformatics/btag515 [paper, repository]

PRISM: Prior-enhanced Inference for Spatial Transcriptomic Cell Type Mapping.

Journal: Bioinformatics (Oxford, England)

Authors' code: lilab-ai4s/PRISM (no license), Zenodo 20529683 (CC-BY-4.0)

Status: code verified, 25 files readable, 3 matches

[1258] Code ↔ Paper doi:10.1093/bioinformatics/btag540 [paper, repository]

Deciphering spatial heterogeneity by multimodal spatial transcriptomics modelling with SpatialModal.

Journal: Bioinformatics (Oxford, England)

Authors' code: xingyili/SpatialModal (no license), Zenodo 21264356 (CC-BY-4.0)

Status: code verified, 20 files readable, 6 matches

[1259] Code ↔ Paper doi:10.1093/bioinformatics/btag553 [paper, repository]

Spatial-spectral fusion enables drug repositioning by capturing indirect and long-range associations in biological networks.

Journal: Bioinformatics (Oxford, England)

Authors' code: Juniper-cola/BIO_SSF (MIT)

Status: code verified, 14 files readable, 2 matches

[1260] Code ↔ Paper doi:10.1093/bioinformatics/btag570 [paper, repository]

CASCADE: criticality avalanche spike cross-platform analysis detection engine, a multi-manufacturer MEA bash analysis pipeline.

Journal: Bioinformatics (Oxford, England)

Authors' code: Zenodo 20840795 (Apache-2.0)

Status: code verified, 27 files readable, 10 matches

[1261] Code ↔ Paper doi:10.1093/bioinformatics/btag578 [paper, repository]

NicheDeSig: niche-aware deconvolution and adaptive signature analysis for spatial transcriptomics.

Journal: Bioinformatics (Oxford, England)

Authors' code: Zenodo 20604815 (Apache-2.0), Davidcoach/NicheDeSig (no license), Zenodo 20685597 (Apache-2.0)

Status: code verified, 10 files readable, 1 match

[1262] Code ↔ Paper doi:10.1093/bioinformatics/btag592 [paper, repository]

Network-based stratification of allele-specific expression reveals patient subgroups in Huntington's disease.

Journal: Bioinformatics (Oxford, England)

Authors' code: macsbio/HD-ASE-NBS (MIT)

Status: code verified, 40 files readable, 11 matches

[1263] Code ↔ Paper doi:10.1093/bioinformatics/btag601 [paper, repository]

SIMLINK enables accurate variant pathogenicity prediction through modeling the gene-variant-feature association structure.

Journal: Bioinformatics (Oxford, England)

Authors' code: Chen-LuWang/SIMLINK (no license), Zenodo 21802211 (CC-BY-4.0)

Status: code verified, 16 files readable, 3 matches

[1264] Code ↔ Paper doi:10.1093/bioinformatics/btag652 [paper, repository]

mmVelo: a deep generative model for estimating cell state-dependent dynamics across multiple modalities.

Journal: Bioinformatics (Oxford, England)

Authors' code: nomuhyooon/mmVelo (no license), Zenodo 20103609 (CC-BY-4.0)

Status: code verified, 170 files readable, 21 matches

[1265] Code ↔ Paper doi:10.1093/brain/awaf440 [paper, repository]

Cerebrospinal fluid-driven ependymal motile cilia defects are implicated in multiple sclerosis.

Journal: Brain : a journal of neurology

Authors' code: stratton-lab/Bigotte-2025-Cilia (GPL-3.0)

Status: code verified, 3 files readable, 3 matches

[1266] Code ↔ Paper doi:10.1093/brain/awaf443 [paper, repository]

Cellular signatures underlying functional resilience in presymptomatic frontotemporal dementia.

Journal: Brain : a journal of neurology

Authors' code: kamentsvetanov/functional_resilience_ftd (GPL-3.0), mrc-cbu/riksneurotools (GPL-3.0), frantisekvasa/rotate_parcellation (MIT), BMHLab/AHBAprocessing (no license), netneurolab/hansen_genescognition (no license)

Status: code verified, 423 files readable, 6 matches

[1267] Code ↔ Paper doi:10.1093/brain/awaf466 [paper, repository]

Cortico-basal oscillations index naturalistic movements during deep brain stimulation.

Journal: Brain : a journal of neurology

Authors' code: openmind-consortium (no license)

Status: code verified

[1268] Code ↔ Paper doi:10.1093/cercor/bhag117 [paper, repository]

Spontaneous changes in the prestimulus alpha power predict both objective and subjective aspects of perception-evidence from 4 paradigms and 471 experimental sessions.

Journal: Cerebral cortex (New York, N.Y. : 1991)

Authors' code: OSF 54zqj (no license)

Status: empty repository

[1269] doi:10.1093/cercor/bhag120 [paper, data]

Cognition disconnected: the influence of domain-general cognition (g) in lesion-deficit mapping.

Journal: Cerebral cortex (New York, N.Y. : 1991)

Status: data only, 1 dataset cited

[1270] Code ↔ Paper doi:10.1093/cercor/bhag125 [paper, repository]

Heritable and experience-dependent cortical traits of reading ability.

Journal: Cerebral cortex (New York, N.Y. : 1991)

Authors' code: mikaelroll/corticalreading (MIT)

Status: code verified, 5 files readable, 5 matches

[1271] Code ↔ Paper doi:10.1093/europace/euag158 [paper, repository]

Optogenetic tachypacing facilitates burst-induced arrhythmia in stem cell-derived human atrial engineered heart tissue.

Journal: Europace : European pacing, arrhythmias, and cardiac electrophysiology : journal of the working groups on cardiac pacing, arrhythmias, and cardiac cellular electrophysiology of the European Society of Cardiology

Authors' code: owlcap0ne/pacer_led_board (no license)

Status: empty repository, 1 file readable

[1272] Code ↔ Paper doi:10.1093/gbe/evag197 [paper, repository]

Molecular Drivers of Mutualistic Association Between Anemone and Anemonefish.

Journal: Genome biology and evolution

Authors' code: sneha100895/Anemone-anemonefish-mutualism-RNA-Seq (GPL-2.0)

Status: code verified, 5 files readable, 4 matches

[1273] Code ↔ Paper doi:10.1093/nar/gkag788 [paper, repository]

Neuronal activity-driven 3D chromatin dynamics in cortical pyramidal neurons depend on SATB2.

Journal: Nucleic acids research

Authors' code: sespesogil/satb2_3d_genome (no license), ay-lab/dchic (MIT), Ali-Mujahid/Satb2-3D-Genome-organization (no license), Zenodo 21534635 (CC-BY-4.0)

Status: code verified, 29 files readable, 8 matches

[1274] doi:10.1093/stcltm/szag071 [paper, data]

Temporal mapping of radiation-induced neural injury and mitigation in human cortical organoids.

Journal: Stem cells translational medicine

Status: data only, 1 dataset cited

[1275] doi:10.1093/toxsci/kfag094 [paper, data]

Building structure activity relationships to avoid toxicity due to unwanted central nervous system ion channel activity.

Journal: Toxicological sciences : an official journal of the Society of Toxicology

Status: data only, 2 datasets cited

[1276] doi:10.1097/md.0000000000050109 [paper, data]

The gut-immune-brain axis in CNS tumors: Causal roles of microbiota and inflammatory proteins unveiled by Mendelian randomization and single-cell transcriptomics.

Journal: Medicine

Status: data only, 1 dataset cited

[1277] Code ↔ Paper doi:10.1109/tmi.2026.3704144 [paper, repository]

Microbubble Track-Based Functional Ultrasound Localization Microscopy in Awake Mice.

Journal: IEEE transactions on medical imaging

Authors' code: ekerwang/TrackBased-fULM (no license)

Status: code verified, 6 files readable

[1278] doi:10.1111/acel.70645 [paper, data]

Unveiling the AcSirt2-FOXO-Mitophagy Axis: Insights Into Mitochondrial Quality Control and Delayed Aging in Apis cerana.

Journal: Aging cell

Status: data only, 1 dataset cited

[1279] doi:10.1111/acel.70646 [paper, data]

HNRNPC Succinylation Influences the Neurodegeneration of Alzheimer's Disease Through YME1L1-Mediated Mitochondrial Metabolism.

Journal: Aging cell

Status: data only, 1 dataset cited

[1280] doi:10.1111/acel.70653 [paper, data]

Distinct Transposable Element Transcript Patterns in Microglia Across Aging and Alzheimer's Disease.

Journal: Aging cell

Status: data only, 1 dataset cited

[1281] doi:10.1111/acel.70659 [paper]

Effects of Physical Activity on Brain White Matter Integrity Are Region-, Dose-, and Age-Dependent: Findings From the Population-Based Rhineland Study.

Journal: Aging cell

Status: code on request

[1282] doi:10.1111/cbdd.70363 [paper]

Multi-Omics Integration Reveals That SN-011 Targets JUNB to Upregulate ADGRE5 and Restore Vascular Endothelial Cell Communication in Ischemic Stroke.

Journal: Chemical biology & drug design

Status: data only

[1283] doi:10.1111/ejn.70641 [paper, data]

Distinct High-Gamma Signals in Primate Prefrontal Cortex Differentiate Cue Information, Preference Revision, and Expected Reward During Value-Based Decisions.

Journal: The European journal of neuroscience

Status: data only, 2 datasets cited

[1284] Code ↔ Paper doi:10.1111/ejn.70659 [paper, repository]

Premovement Suppression of Corticospinal Excitability Is Modulated by Reaction Time Task Requirements.

Journal: The European journal of neuroscience

Authors' code: doi:10.7910/dvn/qn0n2g (no license)

Status: code found, still to be checked

[1285] doi:10.1111/nan.70097 [paper, data]

Transgenic A53T Mice Have Astrocytic α-Synuclein Aggregates in Dopamine and Striatal Regions.

Journal: Neuropathology and applied neurobiology

Status: data only, 2 datasets cited

[1286] Code ↔ Paper doi:10.1111/nyas.70349 [paper, repository]

FREQ-NESS Reveals Age-Related Differences in Frequency-Resolved Brain Networks During Auditory Recognition and Resting State.

Journal: Annals of the New York Academy of Sciences

Authors' code: leonardob92/LBPD-1.0 (GPL-3.0), malvasochiara/FREQ-NESS-for-age-related-differences-in-brain-networks-during-auditory-recognition-and-resting (MIT), mattiarosso92/frequency-resolved_brain_network_estimation_via_source_separation_freq-ness (no license)

Status: code verified, 352 files readable, 10 matches

[1287] Code ↔ Paper doi:10.1111/nyas.70372 [paper, repository]

Distinct Rhythmic Competencies Identified via Internet-Based Assessment.

Journal: Annals of the New York Academy of Sciences

Authors' code: OSF 4r5hd (no license)

Status: code verified, 5 files readable, 12 matches

[1288] Code ↔ Paper doi:10.1111/psyp.70370 [paper, repository]

Song Familiarity Relies on Evidence Accumulation.

Journal: Psychophysiology

Authors' code: chassall/songfamiliarity (MIT)

Status: code verified, 15 files readable, 7 matches

[1289] Code ↔ Paper doi:10.1111/psyp.70376 [paper, repository]

Changes in Aperiodic (1/f Slope) Activity During a Picture-Word Interference Task: Effects of Congruency and Sequence Manipulations.

Journal: Psychophysiology

Authors' code: OSF z3qsg (no license)

Status: code verified, 2 files readable, 2 matches

[1290] Code ↔ Paper doi:10.1117/1.nph.13.s3.s32603 [paper, repository]

SNIRF2BIDS: a GUI-based tool for converting functional near-infrared spectroscopy data to the Brain Imaging Data Structure in R.

Journal: Neurophotonics

Authors' code: raphael-lorenzdelaigue/snirf2bids (no license)

Status: code verified, 8 files readable, 6 matches

[1291] Code ↔ Paper doi:10.1158/2767-9764.crc-25-0579 [paper, repository]

Glioblastoma Subtypes Exhibit Distinct Migration Mechanics and Immune Responses.

Journal: Cancer research communications

Authors' code: drive.google.com/file/d (no license), davidodde/shamsan_etal_codes (MIT)

Status: code verified, 7 files readable, 3 matches

[1292] doi:10.1158/2767-9764.crc-25-0811 [paper, data]

Targeting Wild-type NTRK in NTRK Fusion-Negative Lung Cancer Decreases Brain Metastases.

Journal: Cancer research communications

Status: data only, 1 dataset cited

[1293] doi:10.1167/iovs.67.10.41 [paper, data]

Ascl1 Represses Müller Glial and Promotes Rod Photoreceptor Fate Through Repressing Notch Signaling in Late Retinal Progenitor Cells.

Journal: Investigative ophthalmology & visual science

Status: data only, 1 dataset cited

[1294] Code ↔ Paper doi:10.1167/jov.26.8.1 [paper, repository]

MAME: Multidimensional adaptive metamer exploration with human perceptual feedback.

Journal: Journal of vision

Authors' code: Zenodo 20789863 (MIT), amano-k-lab/mame_hil (MIT)

Status: code verified, 378 files readable, 3 matches

[1295] Code ↔ Paper doi:10.1167/jov.26.8.2 [paper, repository]

Disentangling objects' contextual associations from perceptual and conceptual attributes using time-resolved neural decoding.

Journal: Journal of vision

Authors' code: OSF jy284 (no license)

Status: code verified, 14 files readable, 4 matches

[1296] Code ↔ Paper doi:10.1167/jov.26.8.4 [paper, repository]

The neural processes of illusory occlusion in object recognition.

Journal: Journal of vision

Authors' code: OSF x6fv9 (no license)

Status: code verified, 13 files readable, 5 matches

[1297] Code ↔ Paper doi:10.1167/jov.26.8.9 [paper, repository]

Subspace reverse-correlation estimation of receptive fields during free viewing.

Journal: Journal of vision

Authors' code: figshare 32257377 (CC-BY-4.0)

Status: code verified, 1 file readable

[1298] doi:10.1186/s12974-026-03962-5 [paper]

Neuroinflammation-associated thalamocortical functional connectivity and cognition in older adults.

Journal: Journal of neuroinflammation

Status: code on request

[1299] Code ↔ Paper doi:10.1210/endocr/bqag084 [paper, repository]

The EDC mixture "NeuroMix" alters neuroendocrine physiology, fatty food preference, and the central reward transcriptome.

Journal: Endocrinology

Authors' code: emilyhilz/NeuroMix-2026 (no license)

Status: code verified, 3 files readable, 2 matches

[1300] doi:10.1210/endocr/bqag087 [paper, data]

A single-nucleus multiomic study of preoptic area cells in prepubertal control vs prenatally androgenized female mice.

Journal: Endocrinology

Status: data only, 1 dataset cited

[1301] Code ↔ Paper doi:10.3390/ijms27156925 [paper, repository]

XGBoost-SHAP Interpretable Modeling Identifies and Validates an Eight-Gene Biomarker for Hepatic Encephalopathy Risk Prediction in Cirrhosis.

Journal: International journal of molecular sciences

Authors' code: seandavi/GEOquery (MIT), ModelOriented/shapviz (GPL-2.0), alserglab/fgsea (MIT), yuanfeng-lan/HE-risk-Prediction (MIT)

Status: code verified, 159 files readable, 18 matches

[1302] doi:10.3390/jintelligence14080171 [paper, data]

Cognitive Processes of Probabilistic Prediction in Reading: Language Model Surprisal Across Model Sizes, Token Granularity, and Reading Paradigms.

Journal: Journal of Intelligence

Status: data only, 2 datasets cited

Friday, 31 July 2026 (29 papers)

[1303] doi:10.1007/s00221-026-07368-w [paper]

The role of catastrophizing in anxiety and depression symptom scores among knee osteoarthritis patients: a multimodal assessment with EEG and machine learning.

Journal: Experimental brain research

Status: code on request

[1304] Code ↔ Paper doi:10.1007/s10548-026-01240-4 [paper, repository]

Back to the Future of qEEG: Lifespan Normative Modeling of Spectral Ratios and Functional Indices with Potential Applications to Therapeutic Monitoring.

Journal: Brain topography

Authors' code: CCC-members/HarMNqEEG (GPL-3.0), oldgandalf/Normatives-spectral-based-indexes-from-EEG-resting-state (no license)

Status: code verified, 50 files readable, 2 matches

[1305] Code ↔ Paper doi:10.1016/j.celrep.2026.117782 [paper, repository]

Thermodynamics of consciousness: Non-equilibrium brain dynamics track conscious states.

Journal: Cell reports

Authors' code: Zenodo 20719663 (MIT), tomasberjagabuisan/Thermo-Consciousness (MIT)

Status: code verified, 28 files readable, 8 matches

[1306] doi:10.1016/j.isci.2026.116975 [paper, data]

Loss of YY1 in Purkinje cells triggers cerebellar ataxia via Wnt10b-mediated impairment of dendrite development.

Journal: iScience

Status: data only, 1 dataset cited

[1307] doi:10.1016/j.nbas.2026.100164 [paper, data]

Single-cell transcriptomic analysis reveals age-related remodeling of brain endothelial cells.

Journal: Aging brain

Status: data only, 1 dataset cited

[1308] Code ↔ Paper doi:10.1016/j.xpro.2026.104695 [paper, repository]

Protocol for single-cell epigenetic profiling in human organoids and tumoroids with Epi-CyTOF.

Journal: STAR protocols

Authors' code: Stacheltier/EPI-CyTOF (MIT), ParkerICI/premessa (GPL-3.0)

Status: code verified, 582 files readable, 2 matches

[1309] Code ↔ Paper doi:10.1038/s41467-026-75571-y [paper, repository]

Ribo-ITP enables identification of translons from limited input samples.

Journal: Nature communications

Authors' code: up114/translons (no license)

Status: code verified, 9 files readable, 7 matches

[1310] Code ↔ Paper doi:10.1038/s41467-026-76185-0 [paper, repository]

Spinal-inspired artificial tactile interneuron with high-order burst spiking for intelligent edge interfaces.

Journal: Nature communications

Authors' code: zhangluyan9/nc-spinal-inspired (no license)

Status: code verified, 19 files readable, 4 matches

[1311] Code ↔ Paper doi:10.1038/s41514-026-00456-9 [paper, repository]

Exploring the link between body physiology and cognition: the role of the brain and aging.

Journal: npj aging

Authors' code: HAM-lab-Otago-University/UKBiobank-Brain-Body (MIT)

Status: code verified, 41 files readable, 20 matches

[1312] doi:10.1038/s41597-026-07968-9 [paper, data]

Atieh Schizophrenia EEG, a novel high-quality dataset designed to advance biomarker and machine learning research.

Journal: Scientific data

Status: data only, 1 dataset cited

[1313] Code ↔ Paper doi:10.1126/sciadv.adz6517 [paper, repository]

Corticosterone-linked microglial activity underpins sexually dimorphic neuroplasticity after ketamine anesthesia.

Journal: Science advances

Authors' code: siegert-lab/V1_morphOMICs (MIT), Zenodo 19057068 (CC-BY-4.0), Zenodo 19019013 (GPL-3.0), Zenodo 19071467 (CC-BY-4.0), rcubero/morphomics (GPL-3.0), thomasngl/morphomics_venturino_2025 (no license), jakeyeung/gliamultiomics (no license)

Status: code verified, 140 files readable, 4 matches

[1314] doi:10.1126/sciadv.aeb3579 [paper, data]

Elevating cerebellar theta oscillations boosts noninvasively induced motor plasticity.

Journal: Science advances

Status: data only, 1 dataset cited

[1315] Code ↔ Paper doi:10.1126/sciadv.aeb5352 [paper, repository]

Indirect pathway neurons in the tail of the striatum regulate inhibitory control over sensory driven behavior.

Journal: Science advances

Authors' code: Zenodo 20089479 (CC-BY-4.0), Fuccillo-Lab/Ferrigno-Iliakis_SciAdv2026 (no license)

Status: code verified, 122 files readable, 7 matches

[1316] doi:10.1126/sciadv.aec9329 [paper, data]

Cohesin and NuRD antagonistically drive alternative neuronal fates via PLZF transcription factors.

Journal: Science advances

Status: data only, 1 dataset cited

[1317] Code ↔ Paper doi:10.1162/imag.a.1321 [paper, repository]

Phase similarity between similar objects indicates representational merging across retrieval training but not sleep.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: OSF mygh9 (no license)

Status: code verified, 52 files readable, 16 matches

[1318] doi:10.1186/s12888-026-08472-5 [paper]

Neuroscience-guided bilateral thalamic MRI deep learning for obstructive sleep apnea diagnosis: a dual-center translational study.

Journal: BMC psychiatry

Status: code on request

[1319] doi:10.1186/s12967-026-08706-w [paper, data]

Impaired NADH-linked mitochondrial respiration disrupts ventral midbrain neuronal programs in POLG disease.

Journal: Journal of translational medicine

Status: data only, 1 dataset cited

[1320] doi:10.1242/dev.204788 [paper, data]

Combined HS6ST1 and HS6ST2 loss disrupts the formation and migration of gonadotropin-releasing hormone neurons.

Journal: Development (Cambridge, England)

Status: data only, 1 dataset cited

[1321] doi:10.1371/journal.pbio.3003924 [paper, data]

Endogenous auditory and motor brain rhythms predict individual speech tracking.

Journal: PLoS biology

Status: data only, 1 dataset cited

[1322] Code ↔ Paper doi:10.1371/journal.pone.0354523 [paper, repository]

Frontal brain activity assessment during basic life support skill acquisition and transfer in serious game based learning environments.

Journal: PloS one

Authors' code: eminaksoy148/Frontal-Brain-Activity-Assessment-During-Basic-Life-Support-Skill-Acquisition- (no license)

Status: code verified, 1 file readable

[1323] Code ↔ Paper doi:10.1371/journal.pone.0354882 [paper, repository]

Integrative network pharmacology, transcriptomics, and molecular docking identify candidate Centella asiatica constituents and targets in neurodegenerative diseases.

Journal: PloS one

Authors' code: Zenodo 20779507 (CC-BY-4.0)

Status: code verified, 1 file readable

[1324] Code ↔ Paper doi:10.1590/2317-1782/e20250375pt [paper, repository]

A survey of strategies for the early diagnosis of hearing loss in infants: a scoping review.

Journal: CoDAS

Authors' code: OSF qw4bg (no license)

Status: empty repository

[1325] Code ↔ Paper doi:10.3389/fmed.2026.1875760 [paper, repository]

Adaptive multi-stage domain unlearning for white-matter lesion segmentation.

Journal: Frontiers in medicine

Authors' code: MIC-DKFZ/nnUNet (Apache-2.0), Pubec/nnunetv2-unlearning (Apache-2.0)

Status: code verified, 432 files readable, 3 matches

[1326] Code ↔ Paper doi:10.3389/fnhum.2026.1856059 [paper, repository]

Feasibility of fNIRS for assessing n-back task-related prefrontal cortex oxygenation after continuous cycling at varying intensities: an evaluation of protocol feasibility.

Journal: Frontiers in human neuroscience

Authors' code: lpollonini/qt-nirs (CC-BY-NC-SA-4.0)

Status: code verified, 12 files readable, 2 matches

[1327] doi:10.3389/fnins.2026.1881087 [paper, data]

Dual-graph attention autoencoder for spatial domain identification in ischemic stroke.

Journal: Frontiers in neuroscience

Status: data only, 1 dataset cited

[1328] doi:10.3389/fonc.2026.1834400 [paper, data]

BrainFusionNet: an attention-augmented deep convolutional framework with hybrid loss optimisation and test-time augmentation for multi-class brain tumour detection in magnetic resonance images.

Journal: Frontiers in oncology

Status: data only, 1 dataset cited

[1329] doi:10.3390/brainsci16080822 [paper, data]

Photopharmacological Cholinergic Modulation of Cortical Activity in Human Brain Slices.

Journal: Brain sciences

Status: data only, 1 dataset cited

[1330] doi:10.3390/diagnostics16152428 [paper, data]

PCA-Enhanced Deep Features for Alzheimer's Disease Stage Classification with EFMM.

Journal: Diagnostics (Basel, Switzerland)

Status: data only, 1 dataset cited

[1331] doi:10.3390/metabo16080541 [paper, data]

Spatial Metabolomics and Single-Cell Virtual Knockout Screening Reveal Solanesol Improves Parkinson's Disease-like Pathology Based on Lipid Inflammation Mechanism.

Journal: Metabolites

Status: data only, 1 dataset cited

Thursday, 30 July 2026 (39 papers, 13 on this page)

[1332] Code ↔ Paper doi:10.1002/adhm.202503457 [paper, repository]

A 3D Human Neuron-on-Chip Platform to Monitor Neuronal Injury Responses.

Journal: Advanced healthcare materials

Authors' code: Thorowen/Calcium-imaging-data-processing (no license)

Status: code verified, 4 files readable, 3 matches

[1333] doi:10.1002/advs.202518421 [paper]

Modulation of miR-23b Wnt/β-catenin Axis Strengthens Endothelial Barrier Properties.

Journal: Advanced science (Weinheim, Baden-Wurttemberg, Germany)

Status: data only

[1334] Code ↔ Paper doi:10.1007/s10851-026-01329-2 [paper, repository]

MG-SpaIR: Multi-Grade Sparse-Guided Implicit Representation for Training-Data-Free Image Restoration.

Journal: Journal of mathematical imaging and vision

Authors' code: JingyunLiang/SwinIR (Apache-2.0)

Status: code verified, 7 files readable, 2 matches

[1335] Code ↔ Paper doi:10.1016/j.ebiom.2026.106408 [paper, repository]

Microcephaly-like phenotype triggered by novel reassortant and prototypic Oropouche virus strains in brain organoids.

Journal: EBioMedicine

Authors' code: iza-mcac/2025-08-Oropouche-virus-strains-brain (GPL-3.0)

Status: code verified, 6 files readable, 6 matches

[1336] doi:10.1016/j.esmoop.2026.108300 [paper]

Era-specific prognostic factors and an interpretable machine-learning survival model for renal cell carcinoma brain metastases.

Journal: ESMO open

Status: code on request

[1337] doi:10.1016/j.isci.2026.116995 [paper, data]

EEG microstates and dynamic functional connectivity reveal stage-specific brain networks in subjective tinnitus.

Journal: iScience

Status: code on request, 1 dataset cited

[1338] Code ↔ Paper doi:10.1016/j.isci.2026.117012 [paper, repository]

Multi-level static and dynamic graph-theoretical analyses of resting-state functional networks in a Chinese cohort of preterm neonates.

Journal: iScience

Authors' code: tpengfdu-eng/neonate_GT (no license)

Status: code verified, 10 files readable, 5 matches

[1339] doi:10.1016/j.omta.2026.201824 [paper]

GAA engineered to improve cellular uptake enhances correction in a preclinical hematopoietic stem cell gene therapy model of Pompe disease.

Journal: Molecular therapy. Advances

Status: code on request

[1340] Code ↔ Paper doi:10.1016/j.xcrm.2026.102949 [paper, repository]

Targeting G<sub>i/o</sub>-coupled GPCRs to inhibit nociceptors: Insights from the serotonin receptor Htr1b and triptans.

Journal: Cell reports. Medicine

Authors' code: Zenodo 20801945 (CC-BY-4.0)

Status: code verified, 4 files readable

[1341] Code ↔ Paper doi:10.1038/s41398-026-04292-z [paper, repository]

Regional juxtacortical microstructural changes and gene expression provide insights into neurodegeneration in Alzheimer's disease.

Journal: Translational psychiatry

Authors' code: Sahuhu-Sun/Imaging-transcriptomics (no license)

Status: code verified, 5 files readable, 2 matches

[1342] Code ↔ Paper doi:10.1038/s41467-026-75700-7 [paper, repository]

Gene regulatory innovations from transposable elements in primate cerebellum development.

Journal: Nature communications

Authors' code: kaessmannlab/cerebellum_te (CC-BY-NC-SA-4.0), Zenodo 19354896 (CC-BY-4.0)

Status: code verified, 56 files readable, 18 matches

[1343] Code ↔ Paper doi:10.1038/s41467-026-76045-x [paper, repository]

A manufacturability-informed topology framework for AI-guided design of fibrous network materials.

Journal: Nature communications

Authors' code: Zenodo 20228872 (MIT), BMG-FDU/REFINe (MIT)

Status: code verified, 21 files readable, 21 matches

[1344] Code ↔ Paper doi:10.1038/s41467-026-76103-4 [paper, repository]

Low-intensity pulsed ultrasound-mediated nose-to-brain co-delivery of β-blockers and aPD-L1 enhances glioblastoma immunotherapy.

Journal: Nature communications

Authors' code: OpenGene/fastp (MIT)

Status: code verified, 68 files readable, 2 matches

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