Every paper, by date: page 14

44,644 papers with a page: 24,189 with their authors' code, 4,955 with code on request, 15,495 with data only. The most recent first, 224 a page. Page 14 of 200: 9 June 2026 to 3 June 2026.

Tuesday, 9 June 2026 (32 papers, 25 on this page)

[2913] doi:10.1038/s41392-026-02793-3 [paper, data]

Engineered tRNA reduces vision loss in a mouse model of Leber congenital amaurosis.

Journal: Signal transduction and targeted therapy

Status: data only, 1 dataset cited

[2914] Code ↔ Paper doi:10.1038/s41467-026-73518-x [paper, repository]

Scg2 drives corticospinal circuit reorganization with spinal premotor interneurons and astrocytes for motor recovery after stroke in mice.

Journal: Nature communications

Authors' code: Zenodo 18042248 (MIT)

Status: code verified, 1 file readable

[2915] doi:10.1038/s41467-026-73852-0 [paper, data]

LRP4 is an entry receptor for multiple encephalitic alphaviruses.

Journal: Nature communications

Status: data only, 1 dataset cited

[2916] Code ↔ Paper doi:10.1038/s41467-026-74038-4 [paper, repository]

Semaglutide attenuates neuroinflammation in male mice.

Journal: Nature communications

Authors' code: perslab/Rausch-Ludwig-Bentsen-2026 (no license)

Status: code verified, 38 files readable, 20 matches

[2917] Code ↔ Paper doi:10.1038/s41562-026-02476-7 [paper, repository]

Genome-wide meta-analysis of quantitatively measured generalized anxiety symptoms in individuals of European ancestry.

Journal: Nature human behaviour

Authors' code: megskelton/gad-sympt-metagwas (MIT)

Status: code verified, 7 files readable, 6 matches

[2918] doi:10.1038/s41592-026-03125-7 [paper]

Simultaneous two- and three-photon multiplane imaging across cortical layers in freely moving mice.

Journal: Nature methods

Status: code on request

[2919] doi:10.1038/s41598-026-56896-6 [paper, data]

Evaluation of a human 3D multi-spheroid model derived from SH-SY5Y cells for cytotoxicity testing.

Journal: Scientific reports

Status: data only, 1 dataset cited

[2920] doi:10.1038/s41598-026-57292-w [paper, data]

Beyond structural MRI: combined diffusion metric improve delineation of epileptogenic tissue in focal cortical dysplasia.

Journal: Scientific reports

Status: data only, 2 datasets cited

[2921] doi:10.1038/s41598-026-57375-8 [paper, data]

Efficient uncertainty aware human activity recognition on microcontrollers using hyperdimensional computing and conformal prediction.

Journal: Scientific reports

Status: data only, 4 datasets cited

[2922] Code ↔ Paper doi:10.1038/s43856-026-01707-2 [paper, repository]

Decreased amyloid-related structure-function coupling in preclinical Alzheimer's disease.

Journal: Communications medicine

Authors' code: rmarkello/abagen (BSD-3-Clause), gpreti/GSP_StructuralDecouplingIndex (Apache-2.0)

Status: code verified, 95 files readable, 9 matches

[2923] Code ↔ Paper doi:10.1073/pnas.2524866123 [paper, repository]

G-protein regulatory network governs receptor internalization dynamics.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: figshare 32159364 (CC-BY-4.0)

Status: empty repository

[2924] doi:10.1073/pnas.2538139123 [paper, data]

Cognition does not automatically influence perception: Evidence from neural encoding of colors belonging to different categories.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 2 datasets cited

[2925] Code ↔ Paper doi:10.1073/pnas.2603966123 [paper, repository]

Oxytocin selectively biases sensory-prefrontal communication through network-level suppression and theta coupling.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Authors' code: jeelabKIST/Oxytocin-LFP (no license)

Status: code verified, 10 files readable, 5 matches

[2926] doi:10.1159/000552886 [paper, data]

Early Metabolic Alterations Are Associated with Intraventricular Hemorrhage and Its Complications in Very Preterm Infants.

Journal: Neonatology

Status: data only, 1 dataset cited

[2927] doi:10.1186/s12888-026-08256-x [paper, data]

Graph Neural Networks and sequential architectures for autism detection from eye-tracking biomarkers: a multi-site study.

Journal: BMC psychiatry

Status: code on request, 2 datasets cited

[2928] Code ↔ Paper doi:10.1186/s12974-026-03897-x [paper, repository]

Ischemic injury triggers a protective microglial phenotype in models of Aβ pathology.

Journal: Journal of neuroinflammation

Authors' code: KJPMolgenLab/scSeq_Hefendehl (no license), gitlab.mpcdf.mpg.de/mpibr/scic/roioverstack (no license)

Status: code verified, 38 files readable, 3 matches

[2929] doi:10.1186/s40814-026-01854-2 [paper, data]

Continuity Therapy for couples living with acquired brain injury: a non-randomised uncontrolled feasibility study.

Journal: Pilot and feasibility studies

Status: data only, 1 dataset cited

[2930] doi:10.1371/journal.pbio.3003798 [paper, data]

Animal acoustic communication has a conserved optimal rhythm within the neural delta range.

Journal: PLoS biology

Status: data only, 1 dataset cited

[2931] Code ↔ Paper doi:10.1371/journal.pcbi.1014391 [paper, repository]

Multi-stable oscillations in cortical networks with two classes of inhibition.

Journal: PLoS computational biology

Authors' code: Arnabds/Comp-Neuro-Research-Project-1--Multi-stable-oscillations-in-cortical-networks-with-two-classes (no license)

Status: code verified, 6 files readable

[2932] Code ↔ Paper doi:10.21203/rs.3.rs-9914920/v1 [paper, repository]

Prediction of cognitive performance by demographics, sleep, and brain morphometry: machine learning findings from ENIGMA-Sleep Working Group

Journal: Research Square (preprint)

Authors' code: OSF nhbkq (no license), harveybi/ENIGMA-Sleep-Cognitive-Performance (MIT)

Status: code verified, 317 files readable, 17 matches

[2933] doi:10.3389/fmed.2026.1849122 [paper, data]

An intelligent gradient-guided hybrid inpainting framework for brain MRI reconstruction and Alzheimer's disease classification in connected healthcare systems.

Journal: Frontiers in medicine

Status: data only, 1 dataset cited

[2934] Code ↔ Paper doi:10.3389/frai.2026.1785867 [paper, repository]

A generalized logistic-logit function and its application to multi-layer perceptron and neuron segmentation.

Journal: Frontiers in artificial intelligence

Authors' code: biomedical-cybernetics/CMG-GLLF (no license)

Status: code verified, 240 files readable, 17 matches

[2935] doi:10.3390/jimaging12060255 [paper]

A Multimodal Dense Parallel Global Attention Mechanism for Brain Tumor Image Segmentation.

Journal: Journal of imaging

Status: code on request

[2936] doi:10.5409/wjcp.v15.i2.114986 [paper]

Epidemiological trends and neurological outcomes of pediatric central nervous system infections in rural part of western India.

Journal: World journal of clinical pediatrics

Status: code on request

[2937] doi:10.7554/elife.103373 [paper, data]

Experience shapes the transformation of olfactory representations along the cortico-hippocampal pathway.

Journal: eLife

Status: data only, 1 dataset cited

Monday, 8 June 2026 (43 papers)

[2938] Code ↔ Paper doi:10.1002/epi.70323 [paper, repository]

Individual-specific resting-state networks predict language dominance in drug-resistant epilepsy.

Journal: Epilepsia

Authors' code: thomasyeolab/cbig (MIT)

Status: code verified, 2,000 files readable, 5 matches

[2939] doi:10.1007/s11571-026-10481-9 [paper, data]

Social communication and brain network properties: cognitive predictors and modulation by autistic traits.

Journal: Cognitive neurodynamics

Status: data only, 1 dataset cited

[2940] Code ↔ Paper doi:10.1016/j.crmeth.2026.101480 [paper, repository]

DeepFaceMouse enables scalable prediction of large-scale brain activity from facial dynamics in mice.

Journal: Cell reports methods

Authors' code: Zenodo 19644866 (CC-BY-4.0), yyildirimlab/DeepFaceMouse (MIT)

Status: code verified, 7 files readable, 5 matches

[2941] doi:10.1016/j.ibneur.2026.06.002 [paper, data]

Altered static and dynamic functional network connectivity in Parkinson's disease: A multisite functional magnetic resonance imaging study.

Journal: IBRO neuroscience reports

Status: data only, 1 dataset cited

[2942] Code ↔ Paper doi:10.1016/j.isci.2026.116240 [paper, repository]

Physical activity enhances theta-periodicity of visual attentional allocation.

Journal: iScience

Authors' code: FreyaChe/visual_attention_script (no license)

Status: code verified, 63 files readable, 6 matches

[2943] Code ↔ Paper doi:10.1016/j.isci.2026.116287 [paper, repository]

Neural selectivity for social interactions in the infant brain.

Journal: iScience

Authors' code: OSF 874rw (no license)

Status: code verified, 1 file readable, 2 matches

[2944] doi:10.1016/j.nbd.2026.107475 [paper, data]

Human TDP-43 expression worsens FTD-related phenotypes in progranulin-insufficient mice.

Journal: Neurobiology of disease

Status: data only, 2 datasets cited

[2945] doi:10.1016/j.redox.2026.104253 [paper]

Ursodeoxycholic acid mitigates cerebral ischemia/reperfusion injury by inhibiting thrombin-induced lipid peroxidation through activation of ALDH3A1.

Journal: Redox biology

Status: data only

[2946] Code ↔ Paper doi:10.1016/j.stem.2026.05.005 [paper, repository]

Generation of human appetite-regulating neurons and tanycytes from pluripotent stem cells.

Journal: Cell stem cell

Authors' code: kirkebylab/In_vitro_ARC_VMH_analysis (no license), Zenodo 20118475 (CC-BY-4.0), alexdobin/star (MIT)

Status: code verified, 373 files readable, 17 matches

[2947] doi:10.1038/s41467-026-73995-0 [paper, data]

Anisodine hydrobromide targets matk and prevents delayed rtPA thrombolysis-induced vasogenic cerebral edema in ischemic stroke.

Journal: Nature communications

Status: data only, 4 datasets cited

[2948] Code ↔ Paper doi:10.1038/s41531-026-01412-w [paper, repository]

Network based statistics associates increased connectivity to REM sleep disorder and hallucinations in early DLB.

Journal: NPJ Parkinson's disease

Authors' code: elisabettavallarino/transfreq (BSD-3-Clause)

Status: code verified, 17 files readable, 1 match

[2949] doi:10.1038/s41531-026-01420-w [paper, data]

Locus coeruleus α-synuclein overexpression induces prodromal Parkinsonian features in mice.

Journal: NPJ Parkinson's disease

Status: data only, 1 dataset cited

[2950] Code ↔ Paper doi:10.1038/s41586-026-10735-w [paper, repository]

Distributed control circuits across a brain-and-cord connectome.

Journal: Nature

Authors' code: doi:10.7910/dvn/7wth1n (no license), Zenodo 15999929 (BSD-3-Clause), jasper-tms/the-banc-fly-connectome (GPL-3.0), huit.harvard.edu/ai-sandbox (no license), console.cloud.google.com/storage/browser (no license), CAVEconnectome/pcg_skel (MIT), sjcabs/fly_connectome_data_tutorial (MIT), Zenodo 20350642 (CC-BY-4.0), Zenodo 20350572 (GPL-3.0), Zenodo 20350564 (GPL-3.0), Zenodo 20350570 (GPL-3.0), Zenodo 20350648 (GPL-3.0), Zenodo 20350566 (GPL-3.0), Zenodo 21282630 (BSD-3-Clause)

Status: code verified, 467 files readable, 40 matches

[2951] Code ↔ Paper doi:10.1038/s41593-026-02318-9 [paper, repository]

Induction of cortical on/off periods in awake mice fulfills sleep functions.

Journal: Nature neuroscience

Authors' code: CSC-UW/OFF_PERIOD_INDUCTION_MATERIALS (MIT), CSC-UW/sleepscore (no license)

Status: code verified, 92 files readable, 7 matches

[2952] doi:10.1038/s41597-026-07540-5 [paper, data]

A multimodal epilepsy dataset of paired 3-Tesla and 7-Tesla MRI and intracranial EEG.

Journal: Scientific data

Status: data only, 1 dataset cited

[2953] doi:10.1038/s41598-026-50542-x [paper, data]

Cortical representation of motion sequence processing in younger and older adults: an fMRI study.

Journal: Scientific reports

Status: data only, 1 dataset cited

[2954] doi:10.1038/s41598-026-54127-6 [paper, data]

Canonical autophagy remains inactive in induced pluripotent stem cells and neuronal progenitor cells following DNA damage induced by BPDE or etoposide.

Journal: Scientific reports

Status: data only, 1 dataset cited

[2955] Code ↔ Paper doi:10.1038/s41598-026-55225-1 [paper, repository]

Benchmarking criteria to determine latent linear dimensionality in neural data.

Journal: Scientific reports

Authors' code: francescovaccari/Dimensionality-estimation (MIT), francescovaccari/Dimensionality-estimation-upper-bound (MIT)

Status: code verified, 23 files readable, 19 matches

[2956] doi:10.1038/s41598-026-55790-5 [paper, data]

Parthenogenote-derived brain unveils the critical role of paternal genome in neural development.

Journal: Scientific reports

Status: data only, 1 dataset cited

[2957] Code ↔ Paper doi:10.1038/s41598-026-56070-y [paper, repository]

SSDLabeler: realistic semi-synthetic data generation for multi-label artifact classification in EEG.

Journal: Scientific reports

Authors' code: AkimaCon/SSDLabeler (CC-BY-SA-4.0)

Status: code verified, 17 files readable, 8 matches

[2958] Code ↔ Paper doi:10.1038/s41598-026-56387-8 [paper, repository]

Alterations in topological and dynamical parameters correlate with disease biomarkers and neuropsychological scores in prodromic stages of dementia.

Journal: Scientific reports

Authors' code: Anita-93/TVB_rww_tutorial (no license), wiki.ebrains.eu/bin/view (no license)

Status: code verified, 2 files readable, 1 match

[2959] doi:10.1038/s41598-026-56607-1 [paper, data]

Flunarizine changes microRNA expression in cell cultures and in a mouse model of spinal muscular atrophy.

Journal: Scientific reports

Status: data only, 2 datasets cited

[2960] doi:10.1038/s41598-026-56920-9 [paper, data]

Overexpression of miR-219 as a potential therapeutic strategy of glioblastoma cells in vitro.

Journal: Scientific reports

Status: data only, 1 dataset cited

[2961] doi:10.1038/s41598-026-57238-2 [paper]

Cardiac biomarkers combined with neuroimaging localization predict long-term outcomes in acute stroke patients.

Journal: Scientific reports

Status: code on request

[2962] Code ↔ Paper doi:10.1038/s42003-026-10446-y [paper, repository]

Transcriptional analyses identify pericyte-centered signaling programs altered by sex and brain region in Alzheimer's Disease.

Journal: Communications biology

Authors' code: ccc-protocols.readthedocs.io (no license), Zenodo 16760785 (CC-BY-4.0)

Status: code verified

[2963] Code ↔ Paper doi:10.1038/s42255-026-01539-3 [paper, repository]

A cross-species atlas of the dorsal vagal complex reveals neural mediators of the effects of cagrilintide on energy balance.

Journal: Nature metabolism

Authors' code: perslab/ludwig-coester-Gordian-2025 (no license)

Status: code verified, 17 files readable, 15 matches

[2964] doi:10.1073/pnas.2523612123 [paper, data]

A pericyte chloride clamp mechanism governs capillary control of cerebral blood flow.

Journal: Proceedings of the National Academy of Sciences of the United States of America

Status: data only, 1 dataset cited

[2965] Code ↔ Paper doi:10.1093/braincomms/fcag217 [paper, repository]

Investigation of stress hormones across multiday seizure cycles.

Journal: Brain communications

Authors' code: RiPLresearch/cortisol-study-brain-communications (no license)

Status: code verified, 7 files readable, 3 matches

[2966] Code ↔ Paper doi:10.1113/jp290979 [paper, repository]

A method of compensating for the excitability of spinal motoneurones when estimating the magnitude of potentials evoked in skeletal muscles.

Journal: The Journal of physiology

Authors' code: Zenodo 20037178 (CC-BY-4.0)

Status: code verified, 4 files readable, 11 matches

[2967] Code ↔ Paper doi:10.1159/000552942 [paper, repository]

How Standardized Is Transcranial Magnetic Stimulation Treatment for Depression? Large-Cohort Modeling Reveals Systematic Dosimetric Variability.

Journal: Psychotherapy and psychosomatics

Authors' code: nuan750/2026-zhang-TMS-dosimetric-variability (no license)

Status: code verified, 9 files readable, 2 matches

[2968] Code ↔ Paper doi:10.1162/imag.a.1268 [paper, repository]

Real-time fMRI-triggered experience sampling: A proof-of-concept study.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: DynamicBrainMind/rtfMRI_prep (no license), OSF as2q9 (no license)

Status: code verified, 10 files readable, 5 matches

[2969] doi:10.1186/s12864-026-13028-8 [paper, data]

Selective hippocampal transcriptional adaptation to long-term cannabidiol exposure in mice.

Journal: BMC genomics

Status: data only, 5 datasets cited

[2970] Code ↔ Paper doi:10.1186/s12888-026-08178-8 [paper, repository]

Machine learning model to identify gut microbiome-derived metabolites as potential biomarkers of autism spectrum disorder: a pilot study.

Journal: BMC psychiatry

Authors' code: dec0der0b/IMPC (MIT)

Status: code verified, 14 files readable, 4 matches

[2971] doi:10.1186/s12913-026-14781-y [paper, data]

Indicators for palliative care integration in primary health care: how expert profile shapes consensus in a modified Delphi study.

Journal: BMC health services research

Status: data only, 9 datasets cited

[2972] doi:10.1186/s12967-026-08397-3 [paper, data]

FAM135B suppresses glioblastoma angiogenesis via stabilizing the IKK complex and inactivating the NF-κB/IL-6 signaling pathway.

Journal: Journal of translational medicine

Status: data only, 1 dataset cited

[2973] Code ↔ Paper doi:10.1371/journal.pbio.3003847 [paper, repository]

Metabolic organization of macaque visual cortex reflects visual field topography and perceptual specialization.

Journal: PLoS biology

Authors' code: mikearcaro/brainmaps (no license)

Status: code verified, 2 files readable

[2974] Code ↔ Paper doi:10.1371/journal.pcbi.1014297 [paper, repository]

Statistics of cortical representational drift can enable robust readout.

Journal: PLoS computational biology

Authors' code: CharlesMicou/heavy-tailed-drift (no license)

Status: code verified, 11 files readable

[2975] Code ↔ Paper doi:10.21203/rs.3.rs-9940836/v1 [paper, repository]

Representational Tuning Models: Parametric Encoding Within Arbitrary Stimulus Domains

Journal: Research Square (preprint)

Authors' code: StanBgy/representational_tuning (MIT)

Status: code verified, 79 files readable, 5 matches

[2976] Code ↔ Paper doi:10.2196/80616 [paper, repository]

Digital Interventions Addressing Cognitive and Psychological Symptoms in Long COVID: Scoping Review of Multicomponent Approaches.

Journal: Interactive journal of medical research

Authors' code: OSF hx7ue (no license)

Status: empty repository

[2977] doi:10.3389/fendo.2026.1789738 [paper]

Cellular expression domains of type 3 deiodinase in the meninges, choroid plexus, tanycytes and barrier tissues of the brain.

Journal: Frontiers in endocrinology

Status: data only

[2978] Code ↔ Paper doi:10.3390/e28060644 [paper, repository]

Riemannian Geometry for Noise-Robust Covariance Network Analysis of Schizophrenia EEG: Geometric-Entropic Signatures of Dysconnectivity.

Journal: Entropy (Basel, Switzerland)

Authors' code: kaggle.com/datasets/broach (no license)

Status: dead link

[2979] Code ↔ Paper doi:10.34133/csbj.0134 [paper, repository]

Integrated Multi-Tissue Transcriptomics Reveals Antagonistic Pleiotropy in Aging and Alzheimer's Disease.

Journal: Computational and structural biotechnology journal

Authors' code: salihoglu/Alzheimer_AP (no license)

Status: code verified, 15 files readable, 18 matches

[2980] Code ↔ Paper doi:10.7554/elife.99278 [paper, repository]

Brain-wide arousal signals are segregated from movement planning in the superior colliculus of the macaque.

Journal: eLife

Authors' code: SmithLabNeuro/nasnet (no license)

Status: code verified, 21 files readable

Sunday, 7 June 2026 (1 paper)

[2981] Code ↔ Paper doi:10.1038/s41598-026-56170-9 [paper, repository]

Path integration from optic flow and the role of eye movements.

Journal: Scientific reports

Authors' code: tam-datahub.online.uni-marburg.de/handle/tam (no license)

Status: code verified

Saturday, 6 June 2026 (16 papers)

[2982] Code ↔ Paper doi:10.1016/j.celrep.2026.117505 [paper, repository]

Impaired spatial coding and neuronal hyperactivity in the medial entorhinal cortex of aged APP knock-in mice.

Journal: Cell reports

Authors' code: Zenodo 19040105 (CC-BY-4.0), klusta-team/klustakwik (no license), glmmTMB/glmmTMB (no license), florianhartig/DHARMa (gnu), hussainilab/rodriguez-et-al-cell-reports-2026 (no license)

Status: code verified, 365 files readable, 2 matches

[2983] doi:10.1016/j.dib.2026.112940 [paper, data]

BIDS-formatted resting-state and loudness dependence of auditory evoked potentials (LDAEP) EEG dataset from healthy women.

Journal: Data in brief

Status: data only, 1 dataset cited

[2984] Code ↔ Paper doi:10.1016/j.ebiom.2026.106324 [paper, repository]

Refined single-cell profiling captures a CCR5<sup>high</sup> CD4<sup>+</sup> cytotoxic T-cell precursor in multiple sclerosis.

Journal: EBioMedicine

Authors' code: YFWang-YvH/Refined-single-cell-profiling-captures-a-CCR5high-CD4-cytotoxic-T-cell-precursor-in-MS (no license)

Status: code verified, 7 files readable, 4 matches

[2985] Code ↔ Paper doi:10.1038/s41467-026-73945-w [paper, repository]

Brain neuromarkers predict self- and other-related mentalizing across adult, clinical, and developmental samples.

Journal: Nature communications

Authors' code: ldmk/2025_MentalizingSignatures (MIT), Zenodo 19461625 (MIT)

Status: code verified, 40 files readable, 22 matches

[2986] Code ↔ Paper doi:10.1038/s41467-026-74000-4 [paper, repository]

ArchVelo: archetypal velocity modeling for single-cell multi-omic trajectories.

Journal: Nature communications

Authors' code: pritykinlab/ArchVelo (BSD-3-Clause), pritykinlab/ArchVelo_notebooks (BSD-3-Clause), Zenodo 20085695 (BSD-3-Clause)

Status: code verified, 51 files readable, 14 matches

[2987] doi:10.1038/s41467-026-74058-0 [paper, data]

IQGAP3 bridges matrix stiffness with glioma stem cell maintenance and radioresistance by stabilizing SOX2.

Journal: Nature communications

Status: data only, 1 dataset cited

[2988] Code ↔ Paper doi:10.1038/s41467-026-74087-9 [paper, repository]

Cryo-EM structures of heteromeric Kir4.1/5.1 channel suggest mechanisms of inward rectification and channel blockage.

Journal: Nature communications

Authors' code: Zenodo 20374687 (CC-BY-4.0)

Status: code verified

[2989] Code ↔ Paper doi:10.1038/s41531-026-01421-9 [paper, repository]

Cortico-pallidal beta dynamics underlie impaired turning in Parkinson's disease.

Journal: NPJ Parkinson's disease

Authors' code: openmind-consortium/Analysis-rcs-data (no license)

Status: code verified, 157 files readable

[2990] Code ↔ Paper doi:10.1038/s41597-026-07423-9 [paper, repository]

Unraveling the Complexity of Multilingual Comprehension: Neuroimaging and Linguistic Profiling in 700+ Adults.

Journal: Scientific data

Authors' code: OSF b6ur5 (no license)

Status: code verified, 39 files readable, 7 matches

[2991] Code ↔ Paper doi:10.1038/s42003-026-10462-y [paper, repository]

SpaDC enables sequence-based integrative analysis and regulatory inference of spatial chromatin accessibility data.

Journal: Communications biology

Authors' code: mcllllllll/SpaDC (MIT), Zenodo 20300757 (CC-BY-4.0)

Status: code verified, 30 files readable, 12 matches

[2992] Code ↔ Paper doi:10.1093/braincomms/fcag216 [paper, repository]

Affective and cognitive theory of mind and associated brain functional alterations in frontotemporal dementia.

Journal: Brain communications

Authors' code: SilviaBasaia/Theory-of-mind-in-frontotemporal-dementia (no license)

Status: code verified, 4 files readable, 1 match

[2993] Code ↔ Paper doi:10.1186/s10194-026-02419-7 [paper, repository]

Transcriptional correlates of structure-function coupling plasticity in trigeminal neuralgia: unveiling the synaptic and metabolic associations.

Journal: The journal of headache and pain

Authors' code: starz0275/TN_SF_Code (no license)

Status: code verified, 4 files readable, 2 matches

[2994] doi:10.1186/s12879-026-13704-w [paper, data]

Association of Staphylococcus aureus bloodstream infection with 7-day incident delirium in critically Ill adults: a propensity-weighted competing risk analysis.

Journal: BMC infectious diseases

Status: data only, 2 datasets cited

[2995] doi:10.1186/s13195-026-02107-3 [paper, data]

FKBP51 inhibition by SAFit2 modulates tau pathology and cognitive deficits in PS19 mice.

Journal: Alzheimer's research & therapy

Status: data only, 1 dataset cited

[2996] doi:10.3390/jimaging12060251 [paper, data]

3D Deep Learning for Brain Tumor Segmentation and Survival Prediction: A Comprehensive Multi-Modal Analysis Using the BraTS2020 Dataset.

Journal: Journal of imaging

Status: data only, 1 dataset cited

[2997] doi:10.3390/mi17060697 [paper]

Miniaturized Wearable System for Multimodal EEG/ECG/EMG Sensing and Real-Time Physiological Monitoring.

Journal: Micromachines

Status: code on request

Friday, 5 June 2026 (34 papers)

[2998] doi:10.1002/epi.70254 [paper]

Use of artificial intelligence in magnetic resonance imaging across the epileptic patient's journey: A meta-analysis of four clinical applications.

Journal: Epilepsia

Status: code on request

[2999] doi:10.1007/s11682-026-01167-1 [paper, data]

Estradiol modulated brain connectivity in females during midlife performing an episodic memory task.

Journal: Brain imaging and behavior

Status: data only, 1 dataset cited

[3000] doi:10.1007/s12035-026-05965-y [paper, data]

Microglia Attenuate Neuroinflammation After Subarachnoid Hemorrhage by Modulating Astrocyte Phenotypic Transformation via the RARα/Mafb/Msr1 Pathway.

Journal: Molecular neurobiology

Status: data only, 1 dataset cited

[3001] doi:10.1007/s12672-026-05243-2 [paper]

Identification of hub mRNAs and long non-coding RNAs involved in temozolomide-resistant glioblastoma (brain cancer) cell lines.

Journal: Discover oncology

Status: data only

[3002] Code ↔ Paper doi:10.1016/j.bbih.2026.101275 [paper, repository]

A protocol for the Teen Bugs study: An integrative, multi-omics approach to understanding the role of the gut microbiome and mesocorticolimbic system in adolescent mental health following early adverse caregiving.

Journal: Brain, behavior, & immunity - health

Authors' code: bablab/bablab_hoffman_metagenomics (no license)

Status: code verified, 7 files readable

[3003] Code ↔ Paper doi:10.1016/j.bpj.2026.06.005 [paper, repository]

Curvature-based machine-learning method for automated segmentation of dendritic spines.

Journal: Biophysical journal

Authors' code: aka-gera/curvature-based-machine-learning-for-automated-segmentation-of-dendritic-spines (no license), Zenodo 19593999 (CC-BY-4.0)

Status: code verified, 47 files readable, 7 matches

[3004] Code ↔ Paper doi:10.1016/j.crmeth.2026.101476 [paper, repository]

Unsupervised deep learning enables blur-free resolution enhancement in two-photon microscopy.

Journal: Cell reports methods

Authors' code: HaLU-9000/TENET (no license), Zenodo 19663648 (CC-BY-4.0)

Status: code verified, 47 files readable, 5 matches

[3005] Code ↔ Paper doi:10.1016/j.dcn.2026.101755 [paper, repository]

ABCD-ReproNim: An educational program for responsible and reproducible analyses of ABCD data.

Journal: Developmental cognitive neuroscience

Authors' code: ABCD-ReproNim (no license)

Status: code verified

[3006] Code ↔ Paper doi:10.1016/j.isci.2026.116116 [paper, repository]

Learning stable radiation boundaries for wave simulations via passive neural state-space models.

Journal: iScience

Authors' code: Blizzard-Passage-Lab/NP-SSM_CRBC (no license), Blizzard-Passage-Lab/NP-SSM–CRBC.•Any (no license)

Status: dead link

[3007] doi:10.1016/j.isci.2026.116190 [paper]

Behavioral algorithms of ontogenetic switching in larval and juvenile zebrafish phototaxis.

Journal: iScience

Status: code on request

[3008] Code ↔ Paper doi:10.1016/j.isci.2026.116231 [paper, repository]

Endocytic turnover of endothelial cell-membrane proteins as a driver of rat blood-brain barrier specialization and dysfunction.

Journal: iScience

Authors' code: Molecular-Bionics-Labs/DP_GP_cluster_proteomics (BSD-3-Clause), PrincetonUniversity/DP_GP_cluster (BSD-3-Clause)

Status: code verified, 26 files readable, 2 matches

[3009] doi:10.1038/s12276-026-01732-0 [paper, data]

Comprehensive proteogenomic characterization reveals clinically relevant molecular subtypes associated with medulloblastoma progression.

Journal: Experimental & molecular medicine

Status: data only, 1 dataset cited

[3010] Code ↔ Paper doi:10.1038/s41398-026-04143-x [paper, repository]

Neighborhood opportunity, white matter, and cognition in a large pediatric neuroimaging study.

Journal: Translational psychiatry

Authors' code: neslihanyildizozhan/ABCD-COI (CC-BY-4.0), pnlbwh/dMRIharmonization (other), Zenodo 2584275 (CC-BY-4.0)

Status: code verified, 79 files readable, 8 matches

[3011] Code ↔ Paper doi:10.1038/s41420-026-03185-w [paper, repository]

An electrophysiological and proteomics roadmap for human induced glutamatergic neurons: fine-tuning of culture conditions for pathophysiological studies.

Journal: Cell death discovery

Authors' code: mathworks.com/matlabcentral/fileexchange (no license), ennionano/functional_roadmap_for_induced_glut-neurons (no license)

Status: code verified, 3 files readable, 6 matches

[3012] Code ↔ Paper doi:10.1038/s41467-026-73347-y [paper, repository]

A week in the life of the human brain reveals stable states punctuated by chaotic-like transitions.

Journal: Nature communications

Authors' code: MNobodyWang/WeekLongBrain (no license), Zenodo 18718538 (CC-BY-4.0)

Status: code verified, 70 files readable, 8 matches

[3013] Code ↔ Paper doi:10.1038/s41467-026-73858-8 [paper, repository]

A pegivirus associated with encephalitis in red-legged partridges shows neurotropism across avian species.

Journal: Nature communications

Authors' code: nicola-palmieri/TableAnalyzer (MIT), Zenodo 19233119 (CC-BY-4.0)

Status: code verified, 114 files readable

[3014] doi:10.1038/s41467-026-74037-5 [paper, data]

Microglial CD31 suppresses Aβ clearance and promotes Alzheimer pathology in 5×FAD mice.

Journal: Nature communications

Status: data only, 1 dataset cited

[3015] Code ↔ Paper doi:10.1038/s41514-026-00397-3 [paper, repository]

Nasal administration of Protollin enhances monocyte phagocytosis and decreases CD8<sup>+</sup> T cell cytotoxicity in subjects with early Alzheimer's disease: a Phase 1 clinical trial.

Journal: npj aging

Authors' code: ronaldosfjunior/Kolypetri-et-al-2025 (no license)

Status: code verified, 6 files readable, 12 matches

[3016] Code ↔ Paper doi:10.1038/s41598-026-51531-w [paper, repository]

Multimodal age-dependent diffusion-MRI analysis of the neocortex in a rat model of cortical dysplasia.

Journal: Scientific reports

Authors' code: Biomedical-Imaging-Group/OrientationJ (GPL-3.0), paulinajv/Vertex-wise-LMM-analysis (no license), lconcha/Displasias (no license)

Status: code verified, 255 files readable, 5 matches

[3017] Code ↔ Paper doi:10.1038/s41746-026-02713-3 [paper, repository]

Learning like a radiologist: a medical vision-language model for radiological image analysis via curriculum learning.

Journal: NPJ digital medicine

Authors' code: Erickeyan/RadiSim (no license)

Status: code verified, 44 files readable

[3018] doi:10.1038/s41746-026-02828-7 [paper]

Age, emotional burden and deep brain stimulation electrode location shape Parkinson's disease quality of life.

Journal: NPJ digital medicine

Status: code on request

[3019] doi:10.1038/s42003-026-10445-z [paper]

Structure-function coupling of large-scale cortical networks across the lifespan is spectrally specific.

Journal: Communications biology

Status: code on request

[3020] doi:10.1080/15476286.2026.2682069 [paper, data]

The RNA-binding activity of the <i>Drosophila</i> Brat protein is necessary for viability and mRNA regulation.

Journal: RNA biology

Status: data only, 1 dataset cited

[3021] Code ↔ Paper doi:10.1162/imag.a.1249 [paper, repository]

Global search metaheuristics for neural mass model calibration.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: domdunstan/Global_NMM_parameter_inference (MIT)

Status: code verified, 12 files readable, 7 matches

[3022] doi:10.1162/imag.a.1265 [paper]

Neurophysiological mechanisms of optimized graphomotor performance in biscriptuals.

Journal: Imaging neuroscience (Cambridge, Mass.)

Status: code on request

[3023] Code ↔ Paper doi:10.1186/s12888-026-08253-0 [paper, repository]

Longitudinal changes in amygdala-supplementary motor area connectivity and their association with recurrent self-harm in adolescents with mood disorders.

Journal: BMC psychiatry

Authors' code: HerveAbdi/data4PCCAR (no license)

Status: code verified, 52 files readable, 3 matches

[3024] Code ↔ Paper doi:10.1371/journal.pcbi.1014346 [paper, repository]

StPedf: Cell trajectory inference of spatial transcriptomics via spatial proximity embedding and spatial density-adaptive fusion.

Journal: PLoS computational biology

Authors' code: YuanZ0316/StPedf (no license)

Status: code verified, 20 files readable, 7 matches

[3025] doi:10.1371/journal.pone.0351146 [paper]

Differential analysis of Short chain fatty acids incubation in autistic organoids based on transcriptome sequencing.

Journal: PloS one

Status: data only

[3026] Code ↔ Paper doi:10.21769/bioprotoc.5708 [paper, repository]

Measuring Electrophysiological Activity in Acute Brain Slices, Spheroids, and Organoids Using 3D High-Density Multielectrode Arrays.

Journal: Bio-protocol

Authors' code: Zenodo 13908319 (no license)

Status: code verified, 1 file readable

[3027] Code ↔ Paper doi:10.21769/bioprotoc.5711 [paper, repository]

Quantitative Analysis of Cell and Tissue Shape During Mouse Cranial Neural Tube Closure.

Journal: Bio-protocol

Authors' code: davidmashburn/SeedWaterSegmenter (other)

Status: code verified, 21 files readable, 1 match

[3028] doi:10.3389/fnins.2026.1856135 [paper, data]

Enhancing seizure prediction using a DC-SA-EBiLSTM framework with self-attention mechanism.

Journal: Frontiers in neuroscience

Status: data only, 2 datasets cited

[3029] doi:10.3390/diagnostics16111745 [paper, data]

Brain Tumor Classification and Segmentation in MR Images Using EfficientNet and U-Net++ Models.

Journal: Diagnostics (Basel, Switzerland)

Status: data only, 3 datasets cited

[3030] doi:10.3390/diagnostics16111749 [paper, data]

A Dual-Branch Frequency-Aware Attention Framework for Rare Neurological Disease Classification from Brain MRI.

Journal: Diagnostics (Basel, Switzerland)

Status: data only, 3 datasets cited

[3031] Code ↔ Paper doi:10.3390/molecules31111972 [paper, repository]

A Bond-Level Sequence Framework for Molecular Representation Learning with Structural Constraints.

Journal: Molecules (Basel, Switzerland)

Authors' code: Haoran-Fan/bondformer (no license)

Status: code verified, 21 files readable, 3 matches

Thursday, 4 June 2026 (53 papers)

[3032] Code ↔ Paper doi:10.1002/advs.202518450 [paper, repository]

A Brain-Wide Atlas of Astrocytic Oxytocin Receptors Reveals a Glial Basis for Nucleus Accumbens Modulation of Affiliative Behavior.

Journal: Advanced science (Weinheim, Baden-Wurttemberg, Germany)

Authors' code: Team-Charlet/Denis_et_al._2026 (no license)

Status: code verified, 22 files readable, 3 matches

[3033] doi:10.1007/s00701-026-06927-y [paper]

Digital MULTIMAP: a standardization of objects and actions naming task in a french population.

Journal: Acta neurochirurgica

Status: code on request

[3034] Code ↔ Paper doi:10.1016/j.celrep.2026.117456 [paper, repository]

Anterior lateral motor cortex enables contextual decision-making via dynamic reconfiguration of local circuits.

Journal: Cell reports

Authors' code: Zenodo 19828551 (CC-BY-4.0), asjessie/shadlen-lab (no license)

Status: code verified, 8 files readable, 2 matches

[3035] Code ↔ Paper doi:10.1016/j.celrep.2026.117500 [paper, repository]

Spatio-molecular gene expression reflects dorsal anterior cingulate cortex structure and function in the human brain.

Journal: Cell reports

Authors' code: LieberInstitute/spatialdACC (no license), Zenodo 15830481 (CC-BY-4.0), research.libd.org/globus (no license)

Status: code verified, 2,000 files readable, 40 matches

[3036] Code ↔ Paper doi:10.1016/j.dib.2026.112932 [paper, repository]

Dataset of audiovisual unscripted monologues with speech annotations.

Journal: Data in brief

Authors' code: Zenodo 17578693 (CC-BY-4.0)

Status: code verified

[3037] Code ↔ Paper doi:10.1016/j.isci.2026.116123 [paper, repository]

Developmental manganese exposure, but not concurrent lead, alters social processing selectively in male mice.

Journal: iScience

Authors' code: alexdobin/STAR (MIT)

Status: code verified, 331 files readable

[3038] Code ↔ Paper doi:10.1016/j.isci.2026.116135 [paper, repository]

Predicting ICU in-hospital mortality from text-encoded structured EHR data using adaptive transformer layer fusion.

Journal: iScience

Authors' code: Hanziwww/ALFIA (Apache-2.0)

Status: code verified, 4 files readable, 13 matches

[3039] Code ↔ Paper doi:10.1016/j.isci.2026.116151 [paper, repository]

Impaired sleep resilience underlies transient neural instability in insomnia disorder.

Journal: iScience

Authors' code: Zenodo 20070128 (CC-BY-4.0), guhai123/Impaired-sleep-resilience-underlies-transient-neural-instability-in-insomnia-disorder (no license), EtienneCmb/tensorpac (BSD-3-Clause)

Status: code verified, 70 files readable, 2 matches

[3040] Code ↔ Paper doi:10.1016/j.isci.2026.116173 [paper, repository]

Hierarchical sparse spatiotemporal graph neural network for brain graph classification.

Journal: iScience

Authors' code: JiaqiCUI-npu/GLNSTGNNCode (no license)

Status: code verified, 61 files readable, 5 matches

[3041] Code ↔ Paper doi:10.1016/j.isci.2026.116188 [paper, repository]

Genetic inactivation of Translin/Trax RNase disrupts miRNAs, hippocampal synaptic plasticity, and memory.

Journal: iScience

Authors' code: zjpeters/traxTranslinABCAnalysis (no license)

Status: code verified, 3 files readable, 4 matches

[3042] Code ↔ Paper doi:10.1016/j.isci.2026.116242 [paper, repository]

Brain and central nervous system cancer burden in children across Asia.

Journal: iScience

Authors' code: Z-C-Q/CNS (no license)

Status: code verified, 8 files readable, 10 matches

[3043] doi:10.1016/j.isci.2026.116257 [paper, data]

Decoding neuron-specific lineage to identify diagnostic biomarkers and therapeutic targets for ischemic stroke.

Journal: iScience

Status: code on request, 1 dataset cited

[3044] doi:10.1016/j.prdoa.2026.100458 [paper, data]

Timing of device-aided therapy initiation in Parkinson's disease: reference estimates for healthcare planning and biological heterogeneity.

Journal: Clinical parkinsonism & related disorders

Status: data only, 1 dataset cited

[3045] doi:10.1017/s0033291726104711 [paper, data]

Cell-type and spatiotemporal transcriptional signatures of white matter morphometric similarity network alterations in major depressive disorder.

Journal: Psychological medicine

Status: data only, 1 dataset cited

[3046] Code ↔ Paper doi:10.1021/acs.jpcb.6c01662 [paper, repository]

Metadensity Functional Learning for Classical Fluids: Regularizing with Pair Correlations.

Journal: The journal of physical chemistry. B

Authors' code: sfalmo/NeuralDFT-Tutorial (MIT)

Status: code verified, 6 files readable, 2 matches

[3047] doi:10.1038/s41398-026-04121-3 [paper]

The sex-specific role of adrenal androgens in youth psychopathology.

Journal: Translational psychiatry

Status: code on request

[3048] doi:10.1038/s41398-026-04128-w [paper]

A nucleus accumbens-projecting prefrontal cortex circuit underlies chronic social stress-induced depression-like behaviors.

Journal: Translational psychiatry

Status: code on request

[3049] doi:10.1038/s41421-026-00897-2 [paper]

Trans-ethnic estimation and implications of genetic impact on continuous glycemic profiles.

Journal: Cell discovery

Status: code on request

[3050] Code ↔ Paper doi:10.1038/s41467-026-72782-1 [paper, repository]

Ventrolateral prefrontal cortex in macaques guides decisions in different learning conditions.

Journal: Nature communications

Authors' code: Fujimoto-Lab-UMN/Awake-fMRI-LRN (no license), Zenodo 19225305 (CC-BY-4.0)

Status: code verified, 12 files readable, 1 match

[3051] Code ↔ Paper doi:10.1038/s41467-026-73787-6 [paper, repository]

Skin-attached bioadhesive patch enabling ultrasound deep brain stimulation and real-time electrophysiological monitoring for REM sleep enhancement.

Journal: Nature communications

Authors' code: kevintang725/DARPA-NEUSLEEP (no license), Zenodo 19391527 (CC-BY-4.0)

Status: code verified, 308 files readable, 16 matches

[3052] Code ↔ Paper doi:10.1038/s41467-026-73878-4 [paper, repository]

Neural Response to Familiar Names Predicts Outcome of Comatose ICU Patients: A Prospective Observational Cohort Study.

Journal: Nature communications

Authors' code: OSF nr9aq (no license)

Status: code verified, 14 files readable, 6 matches

[3053] Code ↔ Paper doi:10.1038/s41467-026-73896-2 [paper, repository]

The vagus nerve promotes memory in rats via nutrient-induced septo-hippocampal acetylcholine signaling.

Journal: Nature communications

Authors' code: ltiernol/Kanoski-Lab-Vagus-HPCd-ACh-manuscript-code (no license), OSF y7hup (no license)

Status: code verified, 10 files readable, 1 match

[3054] Code ↔ Paper doi:10.1038/s41467-026-73902-7 [paper, repository]

GWAS on short tandem repeats identifies genetic mechanisms in Alzheimer's disease.

Journal: Nature communications

Authors' code: dgmelin/ukb_ad_str_gwas (GPL-3.0), Zenodo 19484860 (GPL-3.0), Zenodo 8365671 (CC-BY-4.0), gymrek-lab/ensembletr (no license)

Status: code verified, 92 files readable, 13 matches

[3055] Code ↔ Paper doi:10.1038/s41467-026-73906-3 [paper, repository]

A synaptic mechanism for encoding the learned value of action-derived safety.

Journal: Nature communications

Authors' code: Penzolab/Data-analysis-of-Two-way-active-avoidance-task (no license), Zenodo 12707790 (CC-BY-4.0), laxace33/penzo-lab-files-for-ma-omalley-et-al-2024 (no license)

Status: code verified, 41 files readable, 1 match

[3056] Code ↔ Paper doi:10.1038/s41467-026-73932-1 [paper, repository]

Towards real-time additive-free dopamine detection at 10<sup>-8</sup> mM with hardware accelerated platform integrated on camera.

Journal: Nature communications

Authors' code: QizhouW/Hardware-accelerated-Dopamine-Sensing (no license), Zenodo 19430063 (CC-BY-4.0)

Status: code verified, 11 files readable, 3 matches

[3057] Code ↔ Paper doi:10.1038/s41467-026-74035-7 [paper, repository]

An in-sensor communication electronic textile for imperceptible and ultrarobust silent speech.

Journal: Nature communications

Authors' code: Zenodo 20222608 (GPL-3.0)

Status: code verified, 6 files readable, 3 matches

[3058] doi:10.1038/s41538-026-00914-4 [paper, data]

Green tea catechin EGCG attenuates hippocampal atrophy and cognitive impairment in obesity via autophagy signaling.

Journal: NPJ science of food

Status: data only, 1 dataset cited

[3059] Code ↔ Paper doi:10.1038/s41598-026-49379-1 [paper, repository]

Rule-guided Skip-GCN in neural latent information diffusion network for social recommendation.

Journal: Scientific reports

Authors' code: CAorvi/DiffRSG (no license)

Status: code verified, 9 files readable

[3060] doi:10.1038/s41598-026-53295-9 [paper, data]

EEG-based dynamic emotion recognition using multi-scale wavelet transform with a Spatio-Temporal neural network.

Journal: Scientific reports

Status: data only, 1 dataset cited

[3061] Code ↔ Paper doi:10.1038/s41598-026-53829-1 [paper, repository]

Attention U-Net with differential privacy in federated learning framework for brain stroke lesion segmentation.

Journal: Scientific reports

Authors' code: adhisivasys1984/fl-attentionunet-dp (no license)

Status: dead link

[3062] doi:10.1038/s41598-026-54608-8 [paper, data]

Predicting depth of anaesthesia from single-channel EEG using a deep TCN-BiLSTM-attention model with EWMA.

Journal: Scientific reports

Status: data only, 2 datasets cited

[3063] doi:10.1038/s41598-026-54929-8 [paper, data]

Predictors of deep brain stimulation response in patients with obsessive compulsive disorder: a systematic review and meta-analysis.

Journal: Scientific reports

Status: data only, 2 datasets cited

[3064] doi:10.1038/s41598-026-55029-3 [paper, data]

Stimulus statistical context sensitivity of deviant responses to auditory intensity changes.

Journal: Scientific reports

Status: data only, 1 dataset cited

[3065] doi:10.1038/s41598-026-55218-0 [paper]

Amorphous metal-oxide semiconductor thin-film neuron, synapse, and neuromorphic system.

Journal: Scientific reports

Status: code on request

[3066] doi:10.1038/s41598-026-55847-5 [paper, data]

Federated MobileNetV2 with ensemble meta-learning for privacy-preserving brain tumor classification.

Journal: Scientific reports

Status: data only, 1 dataset cited

[3067] Code ↔ Paper doi:10.1038/s41598-026-55855-5 [paper, repository]

Byzantine robust federated learning for heterogeneous brain MRI using multisignal gradient fingerprinting and adaptive trust aggregation.

Journal: Scientific reports

Authors' code: mohammadkarami79/OptiGradTrust (MIT)

Status: code verified, 54 files readable, 32 matches

[3068] Code ↔ Paper doi:10.1038/s41598-026-55960-5 [paper, repository]

Three-dimensional inversion of gravity data using implicit neural representations and scientific machine learning.

Journal: Scientific reports

Authors' code: Zenodo 19440024 (MIT), pankajkmishra/inrgravity3dinv (MIT)

Status: code verified, 28 files readable, 15 matches

[3069] doi:10.1038/s41598-026-56165-6 [paper, data]

Assessment of neurotransmitter-related structural brain changes in borderline personality disorder: an MRI study.

Journal: Scientific reports

Status: data only, 1 dataset cited

[3070] Code ↔ Paper doi:10.1038/s44271-026-00481-0 [paper, repository]

Natural language processing captures memory content associated with shared neural patterns at encoding and retrieval.

Journal: Communications psychology

Authors' code: ajbarn/recall_similarity_ISPS (no license)

Status: code verified, 3 files readable, 3 matches

[3071] Code ↔ Paper doi:10.1093/braincomms/fcag210 [paper, repository]

Practice effects as a dynamic biomarker of early cognitive change in far-from-onset Huntington's disease.

Journal: Brain communications

Authors' code: cfranch/R-code (no license)

Status: empty repository

[3072] doi:10.1111/joa.70183 [paper, data]

The MacBrain Resource Center (MBRC) rhesus macaque postnatal brain histology datasets: Enabling new discoveries through NHP tissue and digital data Repositories.

Journal: Journal of anatomy

Status: data only, 1 dataset cited

[3073] Code ↔ Paper doi:10.1162/imag.a.1243 [paper, repository]

Nonlinear KCCA in fMRI activation analysis: Self-supervised optimization and robust back-reconstruction.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: CCLRCBH-BIC (no license)

Status: code verified

[3074] Code ↔ Paper doi:10.1162/imag.a.1245 [paper, repository]

Towards precision EEG connectomics: Evaluating the benefits of dense sampling.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: brayneuroimaginglab/bnl_open (no license)

Status: code verified, 160 files readable, 9 matches

[3075] Code ↔ Paper doi:10.1162/imag.a.1248 [paper, repository]

Estimating fMRI timescale maps.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: griegner/fmri-timescales (MIT)

Status: code verified, 21 files readable, 2 matches

[3076] doi:10.1162/imag.a.1263 [paper, data]

Individual alpha frequency predicts the sensitivity of time perception.

Journal: Imaging neuroscience (Cambridge, Mass.)

Status: data only, 1 dataset cited

[3077] Code ↔ Paper doi:10.1162/imag.a.1264 [paper, repository]

Data-driven subtyping and staging of ALS: A multicenter, longitudinal, deformation-based morphometry study.

Journal: Imaging neuroscience (Cambridge, Mass.)

Authors' code: BIC-MNI/minc-tools (other), VANDAlab/Preprocessing_Pipeline (no license), ucl-pond/pySuStaIn (MIT)

Status: code verified, 325 files readable, 6 matches

[3078] Code ↔ Paper doi:10.1162/nol.a.247 [paper, repository]

Same Sentences, Different Grammars, Different Brain Responses?: An MEG Study on Case and Agreement Encoding in Hindi and Nepali Split-Ergative Structures.

Journal: Neurobiology of language (Cambridge, Mass.)

Authors' code: OSF qrzpm (no license)

Status: code verified, 4 files readable, 5 matches

[3079] Code ↔ Paper doi:10.1186/s12859-026-06490-4 [paper, repository]

Tissueformer: extending single-cell foundation models to predict population-level phenotypes.

Journal: BMC bioinformatics

Authors' code: ZadorLaboratory/TissueFormer (MIT), Zenodo 15595324 (GPL-3.0), zadorlaboratory/colormycells (GPL-3.0)

Status: code verified, 30 files readable, 13 matches

[3080] doi:10.1186/s12917-026-05562-0 [paper, data]

Differences in meat and wool quality and gastrointestinal/hypothalamic functions in Dexin fine-wool meat sheep with divergent residual feed intake.

Journal: BMC veterinary research

Status: data only, 3 datasets cited

[3081] Code ↔ Paper doi:10.1371/journal.pone.0350637 [paper, repository]

Deep learning-based arterial waveform analysis for predicting postoperative cerebrovascular events in pediatric patients with Moyamoya disease.

Journal: PloS one

Authors' code: Medical-Vision-Lab/Aline_analysis (no license)

Status: dead link

[3082] doi:10.3389/fphar.2026.1793441 [paper, data]

<i>Polygonatum sibiricum</i> combined with <i>Poria cocos</i> prevents spleen deficiency constipation via the gut microbiota-mediated brain-gut axis.

Journal: Frontiers in pharmacology

Status: data only, 1 dataset cited

[3083] Code ↔ Paper doi:10.3389/fphar.2026.1830847 [paper, repository]

Sigma-1 and Sigma-2 receptors exhibit divergent genome-wide Co-expression architectures in human brain despite shared subcellular localization.

Journal: Frontiers in pharmacology

Authors' code: nwharbert8-ui/sigma-receptor-divergence (MIT), Zenodo 19024710 (MIT), nwharbert8-ui/sigma-receptor-divergence-wj (MIT)

Status: code verified, 9 files readable, 15 matches

[3084] Code ↔ Paper doi:10.64898/2026.06.03.26354793 [paper, repository]

Bayesian networks to estimate prognosis in vascular cognitive impairment and small vessel disease: integrated analyses of interdependent contributors to multiple outcomes

Journal: medRxiv (preprint)

Authors' code: umcu/vci-bayes (MIT)

Status: code verified, 22 files readable, 1 match

Wednesday, 3 June 2026 (54 papers, 52 on this page)

[3085] doi:10.1007/s00401-026-03033-2 [paper, data]

AETA peptide contributes to Alzheimer's disease signature of synapse dysfunction.

Journal: Acta neuropathologica

Status: data only, 1 dataset cited

[3086] doi:10.1007/s00429-026-03134-4 [paper]

Characterizing functional connectivity gradients for the hippocampus-amygdala complex in healthy and psychiatric cohorts.

Journal: Brain structure & function

Status: code on request

[3087] Code ↔ Paper doi:10.1007/s10237-026-02067-5 [paper, repository]

Sparse polynomial surrogates for F-actin networks with compliant crosslinkers.

Journal: Biomechanics and modeling in mechanobiology

Authors' code: jpsferreira/UMAT-ABAQUS_library (no license)

Status: code verified, 712 files readable, 3 matches

[3088] doi:10.1007/s10237-026-02070-w [paper]

Modification of a poroelastic model for zero porosity: finite element implementation and investigation of fluid mechanics in the perivascular space.

Journal: Biomechanics and modeling in mechanobiology

Status: code on request

[3089] Code ↔ Paper doi:10.1007/s11033-026-11965-x [paper, repository]

Biological pathways related to mirna-125a-5p in behavioral variant of frontotemporal dementia.

Journal: Molecular biology reports

Authors' code: jessidpereira/Script-for-the-construction-of-the-gene-and-pathway-network-based-on-miRNA-125a-5p. (no license)

Status: code verified, 2 files readable

[3090] doi:10.1007/s12672-026-05341-1 [paper, data]

Single-cell data analysis of lung cancer brain metastasis reveals SEC61G serves as a potential risk indicator.

Journal: Discover oncology

Status: data only, 1 dataset cited

[3091] doi:10.1016/j.bbih.2026.101280 [paper, data]

Inflammation, fronto-amygdala connectivity, and negative affective reactivity to daily stress in adolescents.

Journal: Brain, behavior, & immunity - health

Status: data only, 1 dataset cited

[3092] Code ↔ Paper doi:10.1016/j.celrep.2026.117446 [paper, repository]

Circuit organization and transcriptomic heterogeneity of sympathetic circuits innervating cranial structures.

Journal: Cell reports

Authors' code: ncbi.nlm.nih.gov/geo/query (no license)

Status: code verified

[3093] doi:10.1038/s41398-026-04107-1 [paper]

Abnormal left prefrontal N100 and its relationship with fronto-limbic metabolism in major depressive disorder.

Journal: Translational psychiatry

Status: code on request

[3094] doi:10.1038/s41467-026-73543-w [paper, data]

Engineering technology of implantable galvanic cells for silencing the bone-neural axis in gouty arthritis therapy.

Journal: Nature communications

Status: data only, 1 dataset cited

[3095] Code ↔ Paper doi:10.1038/s41467-026-73770-1 [paper, repository]

Non-coding structural variants disrupt FOXG1 transcriptional regulation in early neurodevelopment.

Journal: Nature communications

Authors' code: Zenodo 5653535 (MIT), linnarsson-lab/developing-human-brain (BSD-2-Clause), nf-core/cutandrun (MIT)

Status: code verified, 27 files readable, 1 match

[3096] Code ↔ Paper doi:10.1038/s41467-026-73895-3 [paper, repository]

Sign language narrative reveals universal and modality-specific features of cortical timescale hierarchy.

Journal: Nature communications

Authors' code: OSF n8sv3 (no license)

Status: code verified, 2 files readable

[3097] Code ↔ Paper doi:10.1038/s41467-026-73996-z [paper, repository]

Genetic architecture of white matter microstructure captured by unsupervised deep representation learning of fractional anisotropy maps.

Journal: Nature communications

Authors' code: ZhiGroup/UDIP-FA (MIT), Zenodo 19739801 (CC-BY-4.0)

Status: code verified, 17 files readable, 22 matches

[3098] doi:10.1038/s41531-026-01391-y [paper, data]

Improving Parkinson's disease diagnosis by non-invasive detection of retinal biomarkers in MPTP monkeys using ERG and pupillometry.

Journal: NPJ Parkinson's disease

Status: data only, 1 dataset cited

[3099] Code ↔ Paper doi:10.1038/s41531-026-01417-5 [paper, repository]

Correlation of thalamic functional organization disturbances and genetic architecture in motor subtypes of Parkinson's disease.

Journal: NPJ Parkinson's disease

Authors' code: OSF gwzhe (no license)

Status: code verified, 1 file readable

[3100] Code ↔ Paper doi:10.1038/s41586-026-10612-6 [paper, repository]

Acquired genetic and cell-state changes in IDH-mutant glioma progression.

Journal: Nature

Authors' code: broadinstitute/inferCNV (other), Kcjohnson/care-glass (MIT), Kcjohnson/care_idh_mut (MIT)

Status: code verified, 289 files readable, 40 matches

[3101] Code ↔ Paper doi:10.1038/s41593-026-02315-y [paper, repository]

The representational geometry of emotional states in basolateral amygdala.

Journal: Nature neuroscience

Authors' code: lposani/decodanda (GPL-3.0), pkoneill/Burrow-Amygdala-Code (no license)

Status: code verified, 23 files readable, 5 matches

[3102] Code ↔ Paper doi:10.1038/s41593-026-02316-x [paper, repository]

Single-cell multi-omic atlas and morphogen screening informs midbrain and hindbrain organoid engineering.

Journal: Nature neuroscience

Authors' code: quadbio/atac_mapper (MIT), quadbio/posterior_multiome (MIT)

Status: code verified, 30 files readable, 15 matches

[3103] Code ↔ Paper doi:10.1038/s41598-026-53424-4 [paper, repository]

Cognitive control networks causally support implicit emotion regulation: evidence from dlPFC stimulation and directed functional connectivity.

Journal: Scientific reports

Authors' code: OSF vz43g (no license)

Status: code verified, 13 files readable, 16 matches

[3104] Code ↔ Paper doi:10.1038/s41598-026-54446-8 [paper, repository]

Deep learning-based Desikan-Killiany parcellation of the brain using diffusion MRI.

Journal: Scientific reports

Authors' code: xmindflow/DKParcellationdMRI (Apache-2.0)

Status: code verified, 18 files readable, 6 matches

[3105] doi:10.1038/s41598-026-54535-8 [paper, data]

Adaptive confidence ensemble reranking for reliable knowledge-intensive question answering.

Journal: Scientific reports

Status: data only, 3 datasets cited

[3106] Code ↔ Paper doi:10.1038/s42003-026-10354-1 [paper, repository]

REM sleep favors the restructuring of problem-related semantic associations.

Journal: Communications biology

Authors' code: OSF 2apgj (no license)

Status: code verified, 7 files readable, 1 match

[3107] Code ↔ Paper doi:10.1038/s42003-026-10388-5 [paper, repository]

Hierarchical organization of tau topography across the Alzheimer's disease continuum integrates amyloid, connectome, and intrinsic molecular vulnerability.

Journal: Communications biology

Authors' code: Zenodo 20278594 (CC-BY-4.0)

Status: code verified

[3108] Code ↔ Paper doi:10.1038/s42003-026-10418-2 [paper, repository]

Cortical PV and VIP interneurons similarly influence SST neuron output despite distinct unitary properties.

Journal: Communications biology

Authors' code: Zenodo 19664110 (CC-BY-4.0)

Status: code verified

[3109] doi:10.1038/s44172-026-00696-3 [paper, data]

Physics-informed neural Volterra compensation enabling over 2600× efficiency improvement in 12,057-km ultra-long-haul coherent transmission.

Journal: Communications engineering

Status: code on request, 1 dataset cited

[3110] doi:10.1039/d6sc00011h [paper, data]

Chimeric peptide-based radiopharmaceuticals for glioblastoma imaging and therapy by targeting mHsp70 and enhancing BBB penetration.

Journal: Chemical science

Status: data only, 1 dataset cited

[3111] Code ↔ Paper doi:10.1093/nargab/lqag050 [paper, repository]

TSProm: deep learning framework to predict tissue-specific regulatory logic.

Journal: NAR genomics and bioinformatics

Authors' code: figshare 30747257 (CC-BY-4.0)

Status: code verified, 44 files readable, 16 matches

[3112] Code ↔ Paper doi:10.1093/psyrad/kkag022 [paper, repository]

Neurodevelopmental and behavioral correlates of household structure independent of socioeconomic status.

Journal: Psychoradiology

Authors' code: VU-BRAINS-lab/Ellis_household-structure_ses (no license)

Status: code verified, 2 files readable, 1 match

[3113] Code ↔ Paper doi:10.1126/sciadv.adz9893 [paper, repository]

Hippocampal place cells map terrain geometry independently of behavior.

Journal: Science advances

Authors' code: Neuroesc/Hillscape_analyses (MIT)

Status: code verified, 93 files readable, 15 matches

[3114] doi:10.1126/sciadv.aea3316 [paper, data]

Charting the human-specific properties of gene expression networks in the infant prefrontal cortex.

Journal: Science advances

Status: data only, 1 dataset cited

[3115] Code ↔ Paper doi:10.1126/sciadv.aed5548 [paper, repository]

In situ proteomics unveils specialized domains for extrasynaptic signaling on neuronal cilia.

Journal: Science advances

Authors' code: Zenodo 18001606 (CC-BY-4.0)

Status: code verified, 1 file readable, 2 matches

[3116] Code ↔ Paper doi:10.1177/13872877261453512 [paper, repository]

Fluorescence spectroscopy and machine learning methods for detection of Alzheimer's disease from circulating white blood cells.

Journal: Journal of Alzheimer's disease : JAD

Authors' code: Zenodo 18217440 (CC-BY-4.0)

Status: code verified, 1 file readable, 4 matches

[3117] doi:10.1186/s12888-026-08189-5 [paper, data]

Deciphering the shared genetic architecture between schizophrenia and suicide attempt: a statistical genomic study.

Journal: BMC psychiatry

Status: data only, 1 dataset cited

[3118] doi:10.1186/s12915-026-02649-w [paper, data]

Neuronal VPS13A depletion links diacylglycerol PKC signaling and synaptic spines.

Journal: BMC biology

Status: data only, 1 dataset cited

[3119] Code ↔ Paper doi:10.1186/s12916-026-04978-7 [paper, repository]

Mapping shared and specific cortical after-effects of repetitive TMS on brain function.

Journal: BMC medicine

Authors' code: netneurolab/neuromaps (CC-BY-NC-SA-4.0), netneurolab/hansen (no license)

Status: code verified, 50 files readable

[3120] Code ↔ Paper doi:10.1186/s12974-026-03890-4 [paper, repository]

Neuronal toll-like receptor-4 regulation of matrix metalloproteinase-9 activity mediates dentate circuit dysfunction after traumatic brain injury.

Journal: Journal of neuroinflammation

Authors' code: Farrell-Laboratory/Toothy (MIT)

Status: code verified, 23 files readable

[3121] doi:10.1186/s13024-026-00946-0 [paper, data]

Insulin resistance alters cortical inhibitory neurons and microglia to exacerbate Alzheimer's knock-in mouse phenotypes.

Journal: Molecular neurodegeneration

Status: data only, 7 datasets cited

[3122] Code ↔ Paper doi:10.1186/s13195-026-02103-7 [paper, repository]

BIN1 gain-of-function in the presynaptic compartment leads to isoform-specific synaptotoxicity.

Journal: Alzheimer's research & therapy

Authors' code: yger/pre-post-drive (no license)

Status: code verified, 6 files readable

[3123] doi:10.1186/s42523-026-00583-4 [paper, data]

The gut-brain-gonad axis mediates salinity adaptation in an invasive turtle: causal evidence from microbiota transplantation and metabolite supplementation.

Journal: Animal microbiome

Status: data only, 2 datasets cited

[3124] Code ↔ Paper doi:10.1371/journal.pone.0349778 [paper, repository]

Manga reading on paper vs. digital devices: Prospective effects on core and supportive integration processes in the brain.

Journal: PloS one

Authors' code: neuropowertools.org/neuropower/neuropowerstart (no license)

Status: code found, still to be checked

[3125] doi:10.1371/journal.pone.0350674 [paper, data]

Transcriptomic profile of the hippocampus of rat strains with contrasting nervous system excitability.

Journal: PloS one

Status: data only, 1 dataset cited

[3126] Code ↔ Paper doi:10.1523/eneuro.0432-25.2026 [paper, repository]

Seize the Data: A User-Friendly GUI for High-Resolution Analysis of Seizure Dynamics in HD-MEA Recordings.

Journal: eNeuro

Authors' code: shorturl.at/vlegn (no license)

Status: code verified

[3127] Code ↔ Paper doi:10.1523/jneurosci.1506-25.2026 [paper, repository]

Controlling Spatio-Temporal Sequences of Neural Activity by Local Synaptic Changes.

Journal: The Journal of neuroscience : the official journal of the Society for Neuroscience

Authors' code: Jiggaboy/local_modulation (no license)

Status: code verified, 92 files readable, 8 matches

[3128] doi:10.3389/fbinf.2026.1808516 [paper]

Integrative multi-cohort analysis of DNA methylation profiles for pancreatic ductal adenocarcinoma biomarker discovery and prognosis.

Journal: Frontiers in bioinformatics

Status: data only

[3129] Code ↔ Paper doi:10.3389/fendo.2026.1828487 [paper, repository]

Castration-induced nigrostriatal deficits are linked to reduced TrkB and loss of mature spines in the dorsal striatum.

Journal: Frontiers in endocrinology

Authors' code: YttriLab/B-SOID (GPL-3.0)

Status: code verified, 124 files readable, 4 matches

[3130] doi:10.3389/fnana.2026.1841420 [paper, data]

TC2-Res: a structured fusion of tract-level and connectome-level brain imaging in small-sample cohorts of athletes.

Journal: Frontiers in neuroanatomy

Status: data only, 1 dataset cited

[3131] Code ↔ Paper doi:10.3389/fncom.2026.1753444 [paper, repository]

NMDA receptor kinetics drive distinct routes to chaotic firing in pyramidal neurons.

Journal: Frontiers in computational neuroscience

Authors' code: borjkhani/Bifurcation_NMDA_FCN (MIT)

Status: code verified, 11 files readable, 26 matches

[3132] Code ↔ Paper doi:10.3389/fnins.2026.1833695 [paper, repository]

Transcriptional signatures of the cortical morphometric similarity network gradient in left temporal lobe epilepsy with different seizure symptoms.

Journal: Frontiers in neuroscience

Authors' code: rmarkello/abagen (BSD-3-Clause)

Status: code verified, 55 files readable, 3 matches

[3133] doi:10.3389/fphys.2026.1727491 [paper, data]

A compartmental model for simulating the gut-brain axis in gastric function regulation.

Journal: Frontiers in physiology

Status: data only, 1 dataset cited

[3134] Code ↔ Paper doi:10.3390/foods15111999 [paper, repository]

Comprehensive Extraction of Shrimp Head Lipids and Peptides from <i>Litopenaeus vannamei</i>: Evaluation of Neuroprotective Potential and Constituent Analysis.

Journal: Foods (Basel, Switzerland)

Authors' code: pan.baidu.com/s/1kry5pnswg9mhr_agbmrb3q (no license)

Status: code verified

[3135] Code ↔ Paper doi:10.3758/s13414-026-03289-6 [paper, repository]

Saccade length consistency during reading and shape-scanning.

Journal: Attention, perception & psychophysics

Authors' code: OSF hnu32 (no license)

Status: code verified, 3 files readable, 1 match

[3136] Code ↔ Paper doi:10.64898/2026.06.02.26354318 [paper, repository]

Attenuation of typical sex differences in the time-resolved functional connectivity of the fusiform gyrus in autism

Journal: medRxiv (preprint)

Authors' code: MIPLabCH/mCAP (Apache-2.0)

Status: code verified, 12 files readable

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